RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11714
(272 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 74.5 bits (184), Expect = 2e-15
Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 61/212 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ + L A ++ ++ LL+ + V + L A + + E +
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ + +N +++ L A +
Sbjct: 66 LLQ-------NK-------------------------AKVNAKAKDDQTPLHCAARIGHT 93
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
++ +LLE N + L A +E +VE V LLE E + +
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ---------ACMTK 144
Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
TPL +AA + ++LL+R A
Sbjct: 145 K------GFTPLHVAAKYGKVRVAELLLERDA 170
Score = 73.3 bits (181), Expect = 5e-15
Identities = 44/212 (20%), Positives = 69/212 (32%), Gaps = 61/212 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQV--KD-----ALLHAIKEEYVEAVEI 118
+ N + + L A + E+ LL+ +V K L A + + V++
Sbjct: 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LLE + N N + L A ++
Sbjct: 99 LLE-------NN-------------------------ANPNLATTAGHTPLHIAAREGHV 126
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
E + LLE + L A K V E+LLE + A +
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---------NAAGK 177
Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ TPL +A H NN +I+K+LL RG
Sbjct: 178 NGL------TPLHVAVHHNNLDIVKLLLPRGG 203
Score = 71.4 bits (176), Expect = 2e-14
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 61/212 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N +++ L A + ++ +LLE N + L A +E +VE V
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LLE + C+ + L A + +
Sbjct: 132 LLE-------KEA-------------------------SQACMTKKGFTPLHVAAKYGKV 159
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
+ +LLE + L A+ ++ V++LL H +
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---------SPAW 210
Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ TPL +AA N E+ + LL G
Sbjct: 211 N------GYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 68.7 bits (169), Expect = 2e-13
Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 61/212 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ N + L A+ + N++++ +LL + L A K+ VE
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ +G + N + L A + +
Sbjct: 231 LLQ-------YG-------------------------GSANAESVQGVTPLHLAAQEGHA 258
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDR 231
E++ +LL N + + L +E +V ++L++ + +A R
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV---------DATTR 309
Query: 232 SSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
TPL +A+H N +++K LL A
Sbjct: 310 M------GYTPLHVASHYGNIKLVKFLLQHQA 335
Score = 68.3 bits (168), Expect = 3e-13
Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 44/220 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
N N + L A ++E + LLE + L A K V E+
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSLI 170
LLE + + G G T + + ++ + + + L
Sbjct: 165 LLERDAHPNAAG------KNGLTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 171 AAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
A + +E+ LL+Y + + L A +E + E V +LL ++ + +
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS--KQANGNLGN 275
Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
S TPL L A + + +L+ G
Sbjct: 276 KSGL-------------TPLHLVAQEGHVPVADVLIKHGV 302
Score = 64.8 bits (159), Expect = 4e-12
Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 48/222 (21%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ + + L A + +E+ LL+Y + + L A +E + E V +
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 119 LLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV--------FNINCVDPLNRSSL 169
LL + G T ++ + + V ++ + + L
Sbjct: 264 LLS-------KQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 170 IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG- 221
A NI+L+ LL++ ++ K L A ++ + + V +LL+ +G
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-------NGA 368
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
P V +T PL +A + + +L
Sbjct: 369 SP---NEVSSDGTT------PLAIAKRLGYISVTDVLKVVTD 401
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 70.2 bits (173), Expect = 2e-14
Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 58/213 (27%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++ + L ++ L A+ ++ +L+ + D A A + +
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ P ++ + ++L A+ E
Sbjct: 98 LLD-------SAAPGTL---------------------DLEARNYDGLTALHVAVNTECQ 129
Query: 179 ELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
E + +LLE +I D L+HA++ + V++LL+ HG + A
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-------HGA--NVNAQM 180
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
S S + L A+ +++ L+ GA
Sbjct: 181 YSGS------SALHSASGRGLLPLVRTLVRSGA 207
Score = 64.0 bits (157), Expect = 2e-12
Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 82/225 (36%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVE 114
+ +D +++ A E+ + + LL+ +++ ++ AL A+ E E
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 115 AVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN-RSSLIAAI 173
V++LLE G +I+ VD + RS LI A+
Sbjct: 131 TVQLLLE-------RGA-------------------------DIDAVDIKSGRSPLIHAV 158
Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSW 226
EN ++ ++ +LL++ N+ + AL A + V L+ G
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-------SG----- 206
Query: 227 EAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
D TPL++A +IL+ R A
Sbjct: 207 -----------ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 61.7 bits (151), Expect = 1e-11
Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 68/219 (31%)
Query: 67 INCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEA 115
D + L A+ N+ ++ L+ + + + L A+
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
V +L+ G + +D +++ A E+
Sbjct: 62 VRLLVT-------AGA-------------------------SPMALDRHGQTAAHLACEH 89
Query: 176 ENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 224
+ + LL+ +++ ++ AL A+ E E V++LLE I
Sbjct: 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149
Query: 225 SWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+PLI A N+ ++++LL GA
Sbjct: 150 GR--------------SPLIHAVENNSLSMVQLLLQHGA 174
Score = 46.3 bits (111), Expect = 3e-06
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 158 INCVDPLNRSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEA 206
D + L A+ N+ ++ L+ + + + L A+
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLP 266
V +L+ G S A+DR T LA + L+ LLD A
Sbjct: 62 VRLLVT-------AGA--SPMALDRHGQT------AAHLACEHRSPTCLRALLDSAAPGT 106
Query: 267 M 267
+
Sbjct: 107 L 107
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 69.7 bits (172), Expect = 2e-14
Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 78/221 (35%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
+ N D + R+ L AA+ + + IL+ ++ + L+ A + +E
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L+ ++N VD L +S+L A N
Sbjct: 110 DLIN-------SHA-------------------------DVNAVDDLGKSALHWAAAVNN 137
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
++ +LL+ N +++ L A +E E ++LL+ H
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-------HF--------- 181
Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
+ P +A +++I+++L +
Sbjct: 182 -------ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 63.6 bits (156), Expect = 3e-12
Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 60/210 (28%)
Query: 68 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 120
N D ++L A + LLE + ++D L A+ + +IL+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
+ +++ + LI A +
Sbjct: 79 R-------NRAT------------------------DLDARMHDGTTPLILAARLAVEGM 107
Query: 181 INILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
+ L+ ++ D AL A V+A +LL+ +G + + +
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-------NGA--NKDMQNNR- 157
Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
+ TPL LAA +YE K+LLD A
Sbjct: 158 -----EETPLFLAAREGSYETAKVLLDHFA 182
Score = 47.4 bits (114), Expect = 9e-07
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 39/137 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N VD L +S+L A N++ +LL+ N +++ L A +E E ++
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ H N + D ++R A E +
Sbjct: 177 LLD-------HFA-------------------------NRDITDHMDRLPRDIAQERMHH 204
Query: 179 ELINILLEYNIQVKDAL 195
+++ +L EYN+ L
Sbjct: 205 DIVRLLDEYNLVRSPQL 221
Score = 34.7 bits (81), Expect = 0.018
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 39/104 (37%)
Query: 177 NIELINILLEYNIQVKD--------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
+I+ + + + AL A + +A + LLE
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-------AS------- 48
Query: 229 VDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGAT 264
D TPL A + + +IL+ AT
Sbjct: 49 ---------ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 71.1 bits (175), Expect = 2e-14
Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 39/214 (18%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD---ALLHAIKEEYVEAVEILL 120
+ + ++L A + ++ L + + A+ + V L+
Sbjct: 45 SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALV 104
Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEV--FNINCVDPLNRSSLIAAIE--NE 176
E + +G+ +L+E D+ EV + +++L + E
Sbjct: 105 E-------GAK-----ERGQMPESLLNE-CDEREVNEIGSHVKHCKGQTALHWCVGLGPE 151
Query: 177 NIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
+E+I IL++ + KD L+ A++ EA++++++ +
Sbjct: 152 YLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS--KSS--LRLDYA 207
Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ + L A +N ++ ++ G
Sbjct: 208 NKQ------GNSHLHWAILINWEDVAMRFVEMGI 235
Score = 64.9 bits (159), Expect = 3e-12
Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 45/214 (21%)
Query: 66 NINCVDPLNRSSLIAAIE--NENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAV 116
+ +++L + E +E+I IL++ + KD L+ A++ EA+
Sbjct: 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL 189
Query: 117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE 176
+++++ ++ + S L AI
Sbjct: 190 DLMMDTVPS--KSSL-------------------------RLDYANKQGNSHLHWAILIN 222
Query: 177 NIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
++ +E ++ ++D L +++ V + LL+ + + PY
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282
Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ + AA + E+L++L ++
Sbjct: 283 --VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314
Score = 59.1 bits (144), Expect = 2e-10
Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 51/222 (22%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY-NIQVKDALLHAIKEEYVEAVEILLEWEE 124
+ + + A+ +L+ L+E + + + + E EI
Sbjct: 78 VHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH--- 132
Query: 125 KIHVHGQPYVSENKGRTIFMM-LDELKDQPEVF--------NINCVDPLNRSSLIAAIEN 175
V KG+T + + E+ + D + + L+ A+E
Sbjct: 133 ---------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF 183
Query: 176 ENIELINILLEY-------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
N E ++++++ + + L AI + + +E +
Sbjct: 184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV------ 237
Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
D PL L+ + K LL +
Sbjct: 238 ---NMEDNE------HTVPLYLSVRAAMVLLTKELLQKTDVF 270
Score = 57.2 bits (139), Expect = 9e-10
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 66/216 (30%)
Query: 58 LKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKE 110
+ D P++ N D N + A + + L+E + +++ AL A K
Sbjct: 5 MTDFPKL-NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
Query: 111 EYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLI 170
V+ + L G+ + + +
Sbjct: 64 GCVDTAKYLAS-------VGE-------------------------VHSLWH--GQKPIH 89
Query: 171 AAIENENIELINILLEY-NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
A+ +L+ L+E + + + + E EI H GQ
Sbjct: 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS---HVKHCKGQ------- 139
Query: 230 DRSSSTFTPDITPLILAAHMNNY--EILKILLDRGA 263
T L + E++KIL+ GA
Sbjct: 140 -----------TALHWCVGLGPEYLEMIKILVQLGA 164
Score = 57.2 bits (139), Expect = 1e-09
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 33/161 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++ + S L AI ++ +E ++ ++D L +++ V +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ + + PY + G T+ + + AA +
Sbjct: 263 LLQKTDVFLIQACPY---HNGTTV----------------LPDRVVWLDFVPAAADPSKQ 303
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
E++ +L E + + K+ + L
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344
Score = 27.1 bits (61), Expect = 7.0
Identities = 1/39 (2%), Positives = 9/39 (23%), Gaps = 2/39 (5%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD 102
+ + + + + L ++ +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 68.3 bits (168), Expect = 1e-13
Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 61/211 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD---ALLHAIKEEYVEAVEILL 120
+ D S+ AI + N+ L+ LL + + L A E + V+ILL
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82
Query: 121 EWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIEL 180
G + + D ++L A+++ N++
Sbjct: 83 F-------SGL-------------------------DDSQFDDKGNTALYYAVDSGNMQT 110
Query: 181 INILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS 232
+ + ++ + + HA+ V V L
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-------EI------PSTFD 157
Query: 233 SSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ ++ + + + +++ +LLD
Sbjct: 158 LAI---LLSCIHITIKNGHVDMMILLLDYMT 185
Score = 59.5 bits (145), Expect = 1e-10
Identities = 22/215 (10%), Positives = 68/215 (31%), Gaps = 73/215 (33%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
+ + D ++L A+++ N++ + + ++ + + HA+ V V
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L + + I+N +
Sbjct: 147 YFLS-------EIPSTFDLAILLS--------------------------CIHITIKNGH 173
Query: 178 IELINILLEY--NIQVKD-----ALLH-AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAV 229
++++ +LL+Y + + + AI + +E ++ L + +
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK-------YD-------- 218
Query: 230 DRSSSTFTPDI-TPLILAAHMNNYEILKILLDRGA 263
+I + + +++ EI K+++++
Sbjct: 219 --------INIYSANLENVLLDDAEIAKMIIEKHV 245
Score = 43.3 bits (103), Expect = 3e-05
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 170 IAAIENENIELINILLE-YNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
++ I + + L + D A +AI + V V LL
Sbjct: 4 LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK------ 57
Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ + PL AA + + +I+KILL G
Sbjct: 58 ---NLLE--------NEFPLHQAATLEDTKIVKILLFSGL 86
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 65.9 bits (162), Expect = 4e-13
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 47/222 (21%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
N RS L AA E ++++ ++L++ NI L+ A + ++EAV+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 119 LLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV---------FNINCVDPLNRSS 168
L++ G + +G T + + K EV ++NC D +
Sbjct: 63 LIK-------AGALVDPKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
+I A E ++++L+ +LL +I ++D L A V+ EILL
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-------AK 167
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
AV+ + PL +AA N Y+ + + L R +
Sbjct: 168 --CDLHAVNIHGDS------PLHIAARENRYDCVVLFLSRDS 201
Score = 56.3 bits (137), Expect = 1e-09
Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 47/222 (21%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
NI+ R+ L+ A EN ++E + L++ + KD L A K+ + E V+
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Query: 119 LLEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSS 168
LL +GQ V+ + G T M+ ++ +IN D
Sbjct: 96 LLS-------NGQMDVNCQDDGGWTP-MIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L A + +++ ILL ++ + L A +E + V + L + +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV---- 203
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ T PL A+ + +
Sbjct: 204 -----TLKNKEGET------PLQCASLNSQVWSALQMSKALQ 234
Score = 50.9 bits (123), Expect = 9e-08
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
N RS L AA E ++++ ++L++ NI L+ A + ++EAV+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGAT 264
L++ + + D ST L LAA +YE+++ LL G
Sbjct: 63 LIKAGALV---------DPKDAEGST------CLHLAAKKGHYEVVQYLLSNGQM 102
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 67.1 bits (165), Expect = 5e-13
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 52/243 (21%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 97
L A G+ + +L L N + D + L A + ++ +LL++ +
Sbjct: 29 LEAARSGNEEKLMALLTPLN-----VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 98 IQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKD 151
+ KD L +A + E E+LL+ HG + T K+
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLK-------HGACVNAMDLWQFTPLHEAAS-KN 135
Query: 152 QPEVF--------NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEY 203
+ EV + V+ +S++ A E E + + + +LL A +E
Sbjct: 136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH-----SLLQAAREAD 190
Query: 204 VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAA---HMNNYEILKILLD 260
+ V+ L + + + T L A H ++ ++LL
Sbjct: 191 LAKVKKTLA------LEI------INFKQPQS---HETALHCAVASLHPKRKQVAELLLR 235
Query: 261 RGA 263
+GA
Sbjct: 236 KGA 238
Score = 62.1 bits (152), Expect = 2e-11
Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 43/215 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N +D + L A +E+ ++LL + + + + A+ A E E +
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN--- 175
+ + E + L + ++L A+ +
Sbjct: 176 EFKGHSLLQ-----AAREADLAKVKKTLALEII------NFKQPQSHETALHCAVASLHP 224
Query: 176 ENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
+ ++ +LL N+ K+ L A + + + +E+L + K+ A
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM---------NA 275
Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+D T L AA + + ++LL G+
Sbjct: 276 LDSL------GQTALHRAALAGHLQTCRLLLSYGS 304
Score = 60.2 bits (147), Expect = 1e-10
Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 64/216 (29%)
Query: 66 NINCVDPLNRSSL-IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
+ L AA +L+ +L N D L A V V+
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
+LL+ HG +++ D L A +
Sbjct: 76 LLLQ-------HG-------------------------ADVHAKDKGGLVPLHNACSYGH 103
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYSWEAV 229
E+ +LL++ + D L A + VE +LL HG P V
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-------HGADP---TLV 153
Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
+ + + +A E L + L
Sbjct: 154 NCHGKS------AVDMAPTPELRERLTYEFKGHSLL 183
Score = 38.6 bits (91), Expect = 0.001
Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 77/229 (33%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIEN---ENIELINILLEY 96
L A D A V+K L + ++L A+ + + ++ +LL
Sbjct: 183 LQAAREADLAKVKKTLALEII------NFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 97 --NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDEL 149
N+ K+ L A + + + +E+L + HG
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-------HGA------------------ 271
Query: 150 KDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEE 202
+N +D L +++L A +++ +LL Y + + A
Sbjct: 272 -------KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG---- 320
Query: 203 YVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNN 251
EAV+ +L + D L+ A+ +
Sbjct: 321 -NEAVQQILSESTPMR---------TSDVD--------YRLLEASKAGD 351
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 64.8 bits (159), Expect = 2e-12
Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 46/229 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ + + A +++L+ + L ++ D A + A V+A++
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 119 LLEW----EEKIHVHGQPYVSENKGRTIFM---------MLDELKDQPEVFNINCVDPLN 165
L + + G T M +L L D+ ++N D +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA-DVNACDNMG 182
Query: 166 RSSLIAAIENENI----ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWE 214
R++LI A+ + + + ++LL++ ++ V+ L+ A++++++ V+ LLE +
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE-Q 241
Query: 215 EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
E I + D T L+LA + +I ++L RGA
Sbjct: 242 EHIEI-------NDTDSD------GKTALLLAVELKLKKIAELLCKRGA 277
Score = 62.5 bits (153), Expect = 1e-11
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 53/206 (25%)
Query: 74 NRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEK 125
+ LI A++NE+++L+ LLE N+ ++ L +A++ + VE+LL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR---- 60
Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
HG + + + A +++L+ + L
Sbjct: 61 ---HGA-------------------------DPVLRKKNGATPFLLAAIAGSVKLLKLFL 92
Query: 186 EY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
++ D A + A V+A++ L + +++ + + R
Sbjct: 93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA--- 149
Query: 239 DITPLILAAHMNNYEILKILLD-RGA 263
T L+ AA + E+LKILLD GA
Sbjct: 150 --TALMDAAEKGHVEVLKILLDEMGA 173
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 61.8 bits (151), Expect = 2e-11
Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 45/228 (19%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++ + L +++L A + L + V + AL A + +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96
Query: 119 LLE-------WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDP 163
LL+ ++ + + + + + E + +
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156
Query: 164 LNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEE 215
+ L A+ +++ E++ +L + ++ + L A++ + +E+LL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A TPL A N + ++L GA
Sbjct: 217 DPT---------ARMYG------GRTPLGSALLRPNPILARLLRAHGA 249
Score = 51.0 bits (123), Expect = 1e-07
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 78/228 (34%)
Query: 67 INCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD-----ALLHAIKEEYVEAV 116
V ++L A+ +++ ++ LL + + +++ AL A V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE 176
E L G + + ++L A
Sbjct: 62 EKLYA-------AGA-------------------------GVLVAERGGHTALHLACRVR 89
Query: 177 NIELINILLEY----NIQVKD-----------------ALLHAIKEEYVEAVEILLEWEE 215
+LL+ D A + + E +W
Sbjct: 90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149
Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ EA + TPL +A + E++++L D GA
Sbjct: 150 QL---------EAENYD------GHTPLHVAVIHKDAEMVRLLRDAGA 182
Score = 47.5 bits (114), Expect = 1e-06
Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 55/225 (24%)
Query: 9 ELL---GSVHNIARQDYCVDAPVEVALTPQEKRFLLVAERGDCATVRKMLDELKDQPEVF 65
+L H D + + + ++ ++ +
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL----- 149
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
+ + + L A+ +++ E++ +L + ++ + L A++ + +E
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
+LL+ G + R+ L +A+ N
Sbjct: 210 LLLK-------AGA-------------------------DPTARMYGGRTPLGSALLRPN 237
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEE 215
L +L + + + + + E+++
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 60.9 bits (149), Expect = 4e-11
Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 64/214 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
+ N D + R+ L AA+ + + IL+ ++ + L+ A + +E
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L+ ++N VD L +S+L A N
Sbjct: 142 DLIN-------SHA-------------------------DVNAVDDLGKSALHWAAAVNN 169
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYSWEAV 229
++ +LL+ N +++ L A +E E ++LL+ H +
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-------HFANR---DIT 219
Query: 230 DRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
D D P +A +++I+++L
Sbjct: 220 DHM------DRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 59.8 bits (146), Expect = 8e-11
Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 61/236 (25%)
Query: 66 NINCVD-----PL--------NRSSLIAAIENENIELINILLEY-----NIQVKD---AL 104
++N PL + + E + +I+ + N + AL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 105 LHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEVF------- 156
A + +A + LLE + +N GRT D VF
Sbjct: 62 HLAARYSRSDAAKRLLE-------ASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNR 113
Query: 157 --NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAV 207
+++ + LI A ++ L+ ++ D AL A V+A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 208 EILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+LL+ +G + + + + TPL LAA +YE K+LLD A
Sbjct: 174 VVLLK-------NGA--NKDMQNNR------EETPLFLAAREGSYETAKVLLDHFA 214
Score = 37.4 bits (88), Expect = 0.003
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 52/137 (37%)
Query: 157 NINCVD-----PL--------NRSSLIAAIENENIELINILLEY-----NIQVKD---AL 195
++N PL + + E + +I+ + N + AL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 196 LHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAA 247
A + +A + LLE D TPL A
Sbjct: 62 HLAARYSRSDAAKRLLE-------AS----------------ADANIQDNMGRTPLHAAV 98
Query: 248 HMNNYEILKILLDRGAT 264
+ + +IL+ AT
Sbjct: 99 SADAQGVFQILIRNRAT 115
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 59.8 bits (146), Expect = 8e-11
Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 70/218 (32%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
++ D N + L A N I+L+ + + L A ++ ++ V
Sbjct: 34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L++ +G + + +D S + A + +
Sbjct: 94 QLMK-------YGA-------------------------DPSLIDGEGCSCIHLAAQFGH 121
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEY-VEAVEILLEW----EEKIHVHGQPYS 225
++ L+ ++ + D L+ A + V+ +LL + H
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--- 178
Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
T L A N ++ +LL+ GA
Sbjct: 179 ---------------TALHWAVLAGNTTVISLLLEAGA 201
Score = 57.4 bits (140), Expect = 4e-10
Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 63/214 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLE--YNIQVKD-----ALLHAIKEEYVEAVEI 118
++ +D + ++ A + E L+E Y+++ D L A ++ V+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDP-LNRSSLIAAIENEN 177
+ G ++ + LN + L A +
Sbjct: 61 YIS-------KG-------------------------AIVDQLGGDLNSTPLHWATRQGH 88
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
+ ++ L++Y + + D + A + + V L+ GQ + +D
Sbjct: 89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA-------KGQ--DVDMMD 139
Query: 231 RSSSTFTPDITPLILAAHMNNY-EILKILLDRGA 263
++ TPL+ AA+ + + ++LL
Sbjct: 140 QNGM------TPLMWAAYRTHSVDPTRLLLTFNV 167
Score = 31.6 bits (73), Expect = 0.18
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 41/130 (31%)
Query: 66 NINCVDPLNRSSLI-AAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAV 116
+++ +D + L+ AA +++ +LL + ++ + D AL A+ +
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 117 EILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENE 176
+LLE G N++ + S+L A + +
Sbjct: 194 SLLLE-------AGA-------------------------NVDAQNIKGESALDLAKQRK 221
Query: 177 NIELINILLE 186
N+ +IN L E
Sbjct: 222 NVWMINHLQE 231
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 59.1 bits (144), Expect = 2e-10
Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 55/206 (26%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+IN + ++L A ++N++++ L+E NI D L A Y++ E
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
L+ G ++ V+ + L A E
Sbjct: 125 LIS-------QGA-------------------------HVGAVNSEGDTPLDIAEEEAME 152
Query: 179 ELINILLEYN-IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT 237
EL+ + + ++ A + +A + L +S T
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND---------VRHAKSGGT-- 201
Query: 238 PDITPLILAAHMNNYEILKILLDRGA 263
L +AA E+LK+L+
Sbjct: 202 ----ALHVAAAKGYTEVLKLLIQARY 223
Score = 48.7 bits (117), Expect = 6e-07
Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 46/218 (21%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
NIN D L AA +++ L+ ++ + L A +E E ++
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF-----NINCVDPLNRSSLIAAI 173
+ + + + E L+D + N ++L A
Sbjct: 158 EVN-RQGVDIEAARKEEERIM---------LRDARQWLNSGHINDVRHAKSGGTALHVAA 207
Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYS 225
E++ +L++ ++ +KD L A EA IL+E +
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-------NLCDM-- 258
Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
EAV++ T +A + ++ +
Sbjct: 259 -EAVNKV------GQTAFDVADEDILGYLEELQKKQNL 289
Score = 44.4 bits (106), Expect = 1e-05
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 158 INCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILL 211
+ D + + + + + +VK L A E V LL
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
E I+ + +T L A +N +++K L++ GA
Sbjct: 61 ERGADIN---------YANVD------GLTALHQACIDDNVDMVKFLVENGA 97
Score = 44.0 bits (105), Expect = 2e-05
Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 39/122 (31%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
L A + E + LLE +I + AL A ++ V+ V+
Sbjct: 33 KTKVKFDDGAVFLAACSSG-DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDR 261
L+E +G +I PL AA +I + L+ +
Sbjct: 92 LVE-------NG----------------ANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 262 GA 263
GA
Sbjct: 129 GA 130
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 59.0 bits (144), Expect = 2e-10
Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 65/213 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N + + S L A ++ + ILL++ + L +A + V +
Sbjct: 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ + E+ + + A ++
Sbjct: 88 LLQHGASVQ-------PESDLAS--------------------------PIHEAARRGHV 114
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA-VD 230
E +N L+ Y NI K L A + + V+ LLE G A V+
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-------SG------ADVN 161
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ +PL A + E+ +L+D GA
Sbjct: 162 QGKG----QDSPLHAVARTASEELACLLMDFGA 190
Score = 55.5 bits (135), Expect = 3e-09
Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 60/202 (29%)
Query: 75 RSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIH 127
S + A + + + L+ + + L A ++ V+ILL+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK------ 57
Query: 128 VHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY 187
HG +N V + L A + + + +N+LL++
Sbjct: 58 -HGA-------------------------QVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 188 --NIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
++Q + + A + +VE V L+ + I + T
Sbjct: 92 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI---------DHKISHLGT------ 136
Query: 242 PLILAAHMNNYEILKILLDRGA 263
PL LA +K LL+ GA
Sbjct: 137 PLYLACENQQRACVKKLLESGA 158
Score = 50.5 bits (122), Expect = 1e-07
Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 76/234 (32%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEIL 119
+N V + L A + + + +N+LL++ ++Q + + A + +VE V L
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 120
Query: 120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE 179
+ +G NI+ + L A EN+
Sbjct: 121 IA-------YGG-------------------------NIDHKISHLGTPLYLACENQQRA 148
Query: 180 LINILLEYNIQV-KD-----ALLHAIKEEYVEAVEILLEW----EEK-------IHV--- 219
+ LLE V + L + E +L+++ + K + +
Sbjct: 149 CVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP 208
Query: 220 ----------HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
P S + R +++I K++L
Sbjct: 209 ESPLAQLFLEREGPPSLMQLCRL--------RIRKCFGIQQHHKITKLVLPEDL 254
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 58.7 bits (143), Expect = 3e-10
Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 65/213 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N + + S L A ++ + ILL++ + L +A + V +
Sbjct: 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ + E+ + + A ++
Sbjct: 144 LLQHGASVQ-------PESDLAS--------------------------PIHEAARRGHV 170
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA-VD 230
E +N L+ Y NI K L A + + V+ LLE G A V+
Sbjct: 171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-------SG------ADVN 217
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ +PL + E+ +L+D GA
Sbjct: 218 QGKG----QDSPLHAVVRTASEELACLLMDFGA 246
Score = 57.9 bits (141), Expect = 5e-10
Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 62/211 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ V + S + A + + + L+ + + L A ++ V+I
Sbjct: 53 MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 110
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ HG +N V + L A + +
Sbjct: 111 LLK-------HGA-------------------------QVNGVTADWHTPLFNACVSGSW 138
Query: 179 ELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRS 232
+ +N+LL++ ++Q + + A + +VE V L+ + I +
Sbjct: 139 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI---------DHKISH 189
Query: 233 SSTFTPDITPLILAAHMNNYEILKILLDRGA 263
T PL LA +K LL+ GA
Sbjct: 190 LGT------PLYLACENQQRACVKKLLESGA 214
Score = 52.9 bits (128), Expect = 2e-08
Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 66/213 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEIL 119
++ +D + + + + I L N + D + A + ++ L
Sbjct: 20 HMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNL 78
Query: 120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE 179
+ G + +N + + S L A ++
Sbjct: 79 IS-------QG-------------------------WAVNIITADHVSPLHEACLGGHLS 106
Query: 180 LINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHV--HGQPYSWEAVD 230
+ ILL++ + L +A + V +LL+ +
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-------- 158
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+P+ AA + E + L+ G
Sbjct: 159 ----------SPIHEAARRGHVECVNSLIAYGG 181
Score = 47.1 bits (113), Expect = 2e-06
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 60/210 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEIL 119
+N V + L A + + + +N+LL++ ++Q + + A + +VE V L
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176
Query: 120 LEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIE 179
+ +G NI+ + L A EN+
Sbjct: 177 IA-------YGG-------------------------NIDHKISHLGTPLYLACENQQRA 204
Query: 180 LINILLEYNIQV-KD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
+ LLE V + L ++ E +L+++ +A +
Sbjct: 205 CVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADT---------QAKNAE- 254
Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
P+ L + L GA
Sbjct: 255 -----GKRPVELVPP-ESPLAQLFLEREGA 278
Score = 26.7 bits (60), Expect = 8.7
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 245 LAAHMNNYEILKILLDRGA 263
+ + +++ L+ RG+
Sbjct: 1 MGSSHHHHHHSSGLVPRGS 19
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 58.8 bits (143), Expect = 3e-10
Identities = 43/221 (19%), Positives = 76/221 (34%), Gaps = 64/221 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD-----ALLHAIKE---EY 112
+ + RS+L A N + ++ +L +I+ D AL+ +
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 113 VEAVEILLEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLI 170
V + ++L+E K+ G KGRT +L
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRT--------------------------ALH 284
Query: 171 AAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
A + N+ ++ L+ N +D ++ A +E +E V L++ G
Sbjct: 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-------QG- 336
Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
S EAVD + D T LA N++ I+ I
Sbjct: 337 -ASVEAVDAT------DHTARQLAQANNHHNIVDIFDRCRP 370
Score = 58.4 bits (142), Expect = 4e-10
Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 39/228 (17%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEIL 119
+P + L + + + ++ + D L E E L
Sbjct: 86 IPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDL 144
Query: 120 LEWEEKIHVHGQPYVSE--NKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSL 169
+ E K + V+ T M+ + + + + RS+L
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVL-ARRRRLVAYLMKAGADPTIYNKSERSAL 203
Query: 170 IAAIENENIELINILLEY-----NIQVKD-----ALLHAIKE---EYVEAVEILLEWEEK 216
A N + ++ +L +I+ D AL+ + V + ++L+E K
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263
Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL-DRGA 263
+ G ++ T L AA ++N I+K L+ ++G+
Sbjct: 264 VDYDGAARK-DSEKYKGR------TALHYAAQVSNMPIVKYLVGEKGS 304
Score = 51.1 bits (123), Expect = 1e-07
Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 68/223 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N +D + L+ A+ L+ L++ + + + AL A +
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
+L + +I +D ++L+ NE
Sbjct: 218 MLN-------STKLKG----------------------DIEELDRNGMTALMIVAHNEGR 248
Query: 179 EL-------------INILLEYNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVH 220
+ ++ + AL +A + + V+ L+ E+ +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-EKGSNK- 306
Query: 221 GQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ D TP++LAA E++ L+ +GA
Sbjct: 307 ------DKQDED------GKTPIMLAAQEGRIEVVMYLIQQGA 337
Score = 50.3 bits (121), Expect = 2e-07
Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 56/225 (24%)
Query: 52 RKMLDELKDQPEVFN------INCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALL 105
R+M++ P + N + ++ SL+ A + I+ L++
Sbjct: 9 RRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY--SLYPNP 66
Query: 106 HAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN 165
+ + Q +P +
Sbjct: 67 QGYGNGNDFLGDFNHT-------NLQ-------------------------IPTEPEPES 94
Query: 166 RSSLIAAIENENIELINILLEYNIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHV 219
L + + + ++ + D L E E L+ E K +
Sbjct: 95 PIKLHTEAAG-SYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153
Query: 220 -HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
G A+D + TPL+LA ++ L+ GA
Sbjct: 154 AAGA--DVNAMDCD------ENTPLMLAVLARRRRLVAYLMKAGA 190
Score = 33.8 bits (78), Expect = 0.044
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 40/125 (32%)
Query: 75 RSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKI 126
R++L A + N+ ++ L+ N +D ++ A +E +E V L++
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----- 334
Query: 127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE 186
G ++ VD + ++ A N + +++I
Sbjct: 335 --QGA-------------------------SVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Query: 187 YNIQV 191
+
Sbjct: 368 CRPER 372
Score = 31.1 bits (71), Expect = 0.34
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 22/119 (18%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKDA----LLHAIKEEYVEAVEIL 210
N + + N N L + + LH E +
Sbjct: 53 QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPI 112
Query: 211 LEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPH 269
E +++ ++ T L A ++ E + L+ A +
Sbjct: 113 TR--ESVNIIDPRHNR--------------TVLHWIASNSSAEKSEDLIVHEAKECIAA 155
Score = 26.8 bits (60), Expect = 8.1
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQV 100
++ VD + ++ A N + +++I +
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 57.6 bits (140), Expect = 3e-10
Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 51/221 (23%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD----------ALLHAIKEEYV 113
++ + ++L A +N+E +L+E + + AL A+ + V
Sbjct: 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88
Query: 114 EAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAI 173
V LL G VS + + + L A
Sbjct: 89 NLVRALLA-------RG-ASVSARA-----------TGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 174 ENENIELINILLEY--NIQVKD-----ALLHAI----KEEYVEAVEILLEWEEKIHVHGQ 222
+ E++ +L+E+ +I+ +D L I K + +LL ++ H+
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189
Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
TP LA N + + L+ +
Sbjct: 190 ELVPNNQGL---------TPFKLAGVEGNIVMFQHLMQKRK 221
Score = 44.5 bits (106), Expect = 9e-06
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 25/105 (23%)
Query: 170 IAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
+AA EN +++ ++ LL++ + + AL A + +EA +L+E
Sbjct: 9 LAAKEN-DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME-------AA 60
Query: 222 ---QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ T L +A N +++ LL RGA
Sbjct: 61 PELVFEPMTSELYE------GQTALHIAVINQNVNLVRALLARGA 99
Score = 36.8 bits (86), Expect = 0.003
Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 39/148 (26%)
Query: 59 KDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAI--- 108
+ + + L A + E++ +L+E+ +I+ +D L I
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165
Query: 109 -KEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRS 167
K + +LL ++ H+ V N+G T P
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT---------------------PFK-- 202
Query: 168 SLIAAIENENIELINILLEY--NIQVKD 193
+A +E NI + L++ +I
Sbjct: 203 --LAGVEG-NIVMFQHLMQKRKHIAAAH 227
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 241 TPLILAAHMNNYEIL-KILLDRGA 263
+PL+LAA N+ + L K+L G
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGC 28
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 57.2 bits (139), Expect = 5e-10
Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 72/221 (32%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N + L ++ L A+ E+ LL + +++D L A ++ + +V +
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
L + + + + L A + +
Sbjct: 97 LTQ-------SC-------------------TTPHLHSILKATNYNGHTCLHLASIHGYL 130
Query: 179 ELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
++ +L+ ++ ++ AL A+ + + V +LL+ G
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-------CG--------- 174
Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLDRGA 263
D+ +P L + I + L
Sbjct: 175 -------ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208
Score = 51.8 bits (125), Expect = 3e-08
Identities = 33/213 (15%), Positives = 59/213 (27%), Gaps = 70/213 (32%)
Query: 75 RSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWE 123
S L AI +E L ++ + ++ L A+ E E LL
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-- 66
Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI 183
G + D + L A E + + +
Sbjct: 67 -----AGC-------------------------DPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 184 LLEY--------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
L + ++ + L A Y+ VE+L+ ++
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR---- 152
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
T L LA + N +++ +LL GA
Sbjct: 153 ----------TALHLAVDLQNPDLVSLLLKCGA 175
Score = 42.9 bits (102), Expect = 4e-05
Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 47/181 (25%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 100
E+G A+V + + + + L A + + ++ +L+ ++
Sbjct: 86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145
Query: 101 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE 154
++ AL A+ + + V +LL+ G
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLK-------CG------------------------ 174
Query: 155 VFNINCVDPLNRSSLIAAIENENIELINILLEY-------NIQVKDALLHAIKEEYVEAV 207
++N V S + + L + + +D + + E+ E
Sbjct: 175 -ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Query: 208 E 208
E
Sbjct: 234 E 234
Score = 41.4 bits (98), Expect = 1e-04
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 26/117 (22%)
Query: 166 RSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWE 214
S L AI +E L ++ + ++ L A+ E E LL
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-- 66
Query: 215 EKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
G E D +T PL LA + +L T + +
Sbjct: 67 -----AG--CDPELRDFRGNT------PLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 56.2 bits (137), Expect = 7e-10
Identities = 46/218 (21%), Positives = 70/218 (32%), Gaps = 77/218 (35%)
Query: 65 FNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
F N D NR+ L+ A I+ L+E ++ KD AL+ A+K + E
Sbjct: 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
LL G N+N D ++ L+ +I
Sbjct: 86 KLLS-------KGS-------------------------NVNTKDFSGKTPLMWSIIFGY 113
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
E+ LLE+ N+ ++ L+ A K E V+ LLE G
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-------LG--------- 157
Query: 231 RSSSTFTPDI--------TPLILAAHMNNYEILKILLD 260
DI T A E++KI +
Sbjct: 158 -------ADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 50.1 bits (121), Expect = 9e-08
Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 75/195 (38%)
Query: 89 LINILLEYNIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIF 143
IN L++ +D L+ A A++ L+E +
Sbjct: 19 SINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE-------NF------------- 58
Query: 144 MMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALL 196
+ D ++LI A++N + + LL N+ KD L+
Sbjct: 59 ------------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 197 HAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAH 248
+I Y E LLE HG ++ TPLI+A+
Sbjct: 107 WSIIFGYSEMSYFLLE-------HG----------------ANVNDRNLEGETPLIVASK 143
Query: 249 MNNYEILKILLDRGA 263
EI+K LL+ GA
Sbjct: 144 YGRSEIVKKLLELGA 158
Score = 36.6 bits (86), Expect = 0.003
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 39/130 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
N+N D ++ L+ +I E+ LLE+ N+ ++ L+ A K E V+
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LLE G +I+ D ++ +A
Sbjct: 153 LLE-------LGA-------------------------DISARDLTGLTAEASARIFGRQ 180
Query: 179 ELINILLEYN 188
E+I I E
Sbjct: 181 EVIKIFTEVR 190
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 55.1 bits (134), Expect = 1e-09
Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 61/204 (29%)
Query: 74 NRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKI 126
N S+ + + +E I D L+ A + VE LL+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ----- 57
Query: 127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE 186
+G + + S+L A +++ +LL+
Sbjct: 58 --NGA-------------------------DPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 187 Y--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
++ D LL+A+ +V+ V++LLE S
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP---------TIETDSGYN---- 137
Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
+ LA + + +++
Sbjct: 138 --SMDLAVALGYRSVQQVIESHLL 159
Score = 43.5 bits (104), Expect = 1e-05
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 46/161 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
IN D + L+ A + I ++ LL+ + Q+ AL A + Y + V++
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ G ++N D + L+ A+ ++
Sbjct: 88 LLD-------CGV-------------------------DVNEYDWNGGTPLLYAVHGNHV 115
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
+ + +LLE + ++ ++ A+ Y +++
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 56.1 bits (136), Expect = 1e-09
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 60/198 (30%)
Query: 78 LIAAIENENIELINILLEYNIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
+ ++ + V A ++ +A+ LLE
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE------------ 66
Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 191
R +++ VD R++L+ + + + +L E ++
Sbjct: 67 -----DR----------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 192 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
+D AL A E VE L+E I E D T L L
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADI---------EVEDERGL------TALEL 150
Query: 246 AAHMNNYEILKILLDRGA 263
A + + G
Sbjct: 151 AREILKTTPKGNPMQFGR 168
Score = 55.3 bits (134), Expect = 3e-09
Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 67/210 (31%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
+++ VD R++L+ + + + +L E ++ +D AL A E VE
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L+E G +I D ++L A E
Sbjct: 129 ALVE-------LGA-------------------------DIEVEDERGLTALELAREILK 156
Query: 178 IELINILLEY--NIQVKD--ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
+++ I ++ +L EY E EI+ + G+
Sbjct: 157 TTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK-----RGKGK----------- 200
Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
L + + + A
Sbjct: 201 -------DVEYLVRWKDGGDCEWVKGVHVA 223
Score = 41.8 bits (99), Expect = 8e-05
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 23/152 (15%)
Query: 66 NINCVDPLN-RSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
+++ D ++L A E++ L+E +I+V+D AL A +
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 161
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
+++ +I + I ++ ++ + EV I + +
Sbjct: 162 NPMQFGRRI----------GLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211
Query: 178 IELINILLEY--NIQVKD---ALLHAIKEEYV 204
+ + + KD L +A+ E +
Sbjct: 212 GDCEWVKGVHVAEDVAKDYEDGLEYAVAESVI 243
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 54.3 bits (132), Expect = 2e-09
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 59/199 (29%)
Query: 78 LIAAIENENIELINILLEY--NIQVKDAL----LHAIKEEYVEAVEILLEWEEKIHVHGQ 131
L +A ++E + LL+ N+ ++ L +K E LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL-------RGA 61
Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NI 189
N + D + + A ++ + LLE+ ++
Sbjct: 62 -------------------------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 190 QVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLI 244
++D L A KE ++ VE L++ H + + T
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVK-------HTAS-NVGHRNHKGD------TACD 142
Query: 245 LAAHMNNYEILKILLDRGA 263
LA E++ ++ GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 45.4 bits (109), Expect = 2e-06
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 39/123 (31%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
N+N + R++L N E+ LL N +KD + A + +++ ++
Sbjct: 30 NVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDR 261
LLE A D+ PL LAA + +++ L+
Sbjct: 89 LLE-------FQ------A----------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 262 GAT 264
A+
Sbjct: 126 TAS 128
Score = 44.3 bits (106), Expect = 6e-06
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 48/162 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
N+N + R++L N E+ LL N +KD + A + +++ ++
Sbjct: 30 NVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LLE ++N D L A + ++
Sbjct: 89 LLE-------FQ-------------------------ADVNIEDNEGNLPLHLAAKEGHL 116
Query: 179 ELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLE 212
++ L+++ N+ ++ A A E V ++
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 34.3 bits (80), Expect = 0.018
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L AA + E L LL
Sbjct: 7 NELASAAARGDLEQLTSLLQNNV 29
Score = 31.2 bits (72), Expect = 0.17
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 16/70 (22%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
L A +E + LL+ + A + T L + N E
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNV---------NAQNGF------GRTALQVMKL-GNPE 51
Query: 254 ILKILLDRGA 263
I + LL RGA
Sbjct: 52 IARRLLLRGA 61
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 54.7 bits (132), Expect = 2e-09
Identities = 27/213 (12%), Positives = 49/213 (23%), Gaps = 63/213 (29%)
Query: 74 NRSSLIAAIENENIELINILLEYNIQVKD----------ALLHAIKEEYVEAVEILLEWE 123
++ AA E L E + K+ L + E + L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-- 63
Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN------EN 177
G +I + +
Sbjct: 64 -----KG-------------------------ADIKSRTKEGTTLFFPLFQGGGNDITGT 93
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVD 230
EL I LE +I + I +V+ E++ ++ G D
Sbjct: 94 TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL--LIKD 151
Query: 231 RSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ +T L LK++ D
Sbjct: 152 KW------GLTALEFVKRCQKPIALKMMEDYIK 178
Score = 27.3 bits (61), Expect = 4.0
Identities = 4/39 (10%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD 102
+ D ++L + + ++ +Y +K+
Sbjct: 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 55.1 bits (134), Expect = 3e-09
Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 48/221 (21%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD--------ALLHAIKEEYVEA 115
+ D R L ++ + E+ + LL N+ + D A +E
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRS 167
V+ L + K ++ N+G T + K EV ++ D N+
Sbjct: 88 VKSLYDRPLKPDLN----KITNQGVTCLHLAVG-KKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 168 SLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHV 219
L A +++LI +L + +D L HA+ E + +A +L+E
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE------K 196
Query: 220 HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
+G ++ VD +A + ++ K L+
Sbjct: 197 YGA--EYDLVDNK------GAKAEDVALN---EQVKKFFLN 226
Score = 51.3 bits (124), Expect = 6e-08
Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 66/204 (32%)
Query: 79 IAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 131
A +ENE ++ +L + KD L ++ + E LL +
Sbjct: 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-------KME 60
Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN---RSSLIAAIENENIELINILLEY- 187
N+N D + + A N+E++ L +
Sbjct: 61 -------------------------NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 188 ---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
++ L A+ +++ E + L+E +G S D+ +
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-------NG--ASVRIKDKFNQI---- 142
Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
PL AA + + +++++L G
Sbjct: 143 --PLHRAASVGSLKLIELLCGLGK 164
Score = 30.1 bits (69), Expect = 0.55
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 241 TPLILAAHMNNY-EILKILLDRGA 263
PL A N + ++ ++L + +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPS 27
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 53.2 bits (129), Expect = 8e-09
Identities = 34/206 (16%), Positives = 75/206 (36%), Gaps = 66/206 (32%)
Query: 78 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
L AA + + ++ IL + + D L A+ +E + L++ G
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-------RG 62
Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--- 187
+IN + ++ S + A E++ +L++
Sbjct: 63 -------------------------ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97
Query: 188 NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP 242
++ + AL+ A ++ +++ V++LLE G+ + + T
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLE-------DGRE-DIDFQNDFGYT------A 143
Query: 243 LILAAHMNNY-----EILKILLDRGA 263
LI A + +I+K+L++ GA
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 52.8 bits (128), Expect = 1e-08
Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 66/214 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++ VD + L A+ N +IE+ L++ +I +++ L+A + E +
Sbjct: 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAY 90
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
+L+ H P ++N + ++LI A E +I
Sbjct: 91 MLK-------HATP------------------------DLNKHNRYGGNALIPAAEKGHI 119
Query: 179 ELINILLEY---NIQVKD-----ALLHAI-----KEEYVEAVEILLEWEEKIHVHGQPYS 225
+ + +LLE +I ++ AL+ A+ + Y + V++L+E
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-------- 171
Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
D S T + A EI KIL
Sbjct: 172 -SIKDNSGR------TAMDYANQKGYTEISKILA 198
Score = 42.4 bits (101), Expect = 4e-05
Identities = 24/145 (16%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
+IN + ++ S + A E++ +L++ ++ + AL+ A ++ +++ V+
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 118 ILLEWEEKIHVHGQPYVSE--NKGRTIFMM----LDELKDQPEVF--------NINCVDP 163
+LLE G+ + + G T + + + ++ + + D
Sbjct: 124 LLLE-------DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176
Query: 164 LNRSSLIAAIENENIELINILLEYN 188
R+++ A + E+ IL +YN
Sbjct: 177 SGRTAMDYANQKGYTEISKILAQYN 201
Score = 30.9 bits (71), Expect = 0.32
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L A + ++ +IL D
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTY 30
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 52.5 bits (127), Expect = 1e-08
Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 60/198 (30%)
Query: 78 LIAAIENENIELINILLEYNIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
+ ++ + V A ++ +A+ LL +
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL--------EDR-- 67
Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 191
+++ VD R++L+ + + + +L E ++
Sbjct: 68 -----------------------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 192 KD------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
+D AL A E VE L+E I E D T L L
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADI---------EVEDERGL------TALEL 149
Query: 246 AAHMNNYEILKILLDRGA 263
A + + G
Sbjct: 150 AREILKTTPKGNPMQFGR 167
Score = 36.3 bits (85), Expect = 0.004
Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 50/155 (32%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 117
+++ VD R++L+ + + + +L E ++ +D AL A E VE
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
L+E G +I D ++L A E
Sbjct: 128 ALVE-------LGA-------------------------DIEVEDERGLTALELAREILK 155
Query: 178 IELINILLEYNIQVKDALLHAIKEEYVEAVEILLE 212
++ + + + +L
Sbjct: 156 TTPKGNPMQ----------FGRRIGLEKVINVLEG 180
Score = 27.5 bits (62), Expect = 3.8
Identities = 1/23 (4%), Positives = 4/23 (17%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
++ + A
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAA 38
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 52.0 bits (126), Expect = 2e-08
Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 62/205 (30%)
Query: 74 NRSSLIAAIENENIELINILLEYN---IQVKD-----ALLHAIKEEYVEAVEILLEWEEK 125
+ S+ ++ + L + D L+ A +E V LLE
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---- 57
Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILL 185
G + + + S+L A +++ +LL
Sbjct: 58 ---WGA-------------------------DPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 186 EY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
E +I + D LL+A++ +V+ VE LL + S
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL---------TTEADSGY---- 136
Query: 239 DITPLILAAHMNNYEILKILLDRGA 263
TP+ LA + ++ +++ +
Sbjct: 137 --TPMDLAVALGYRKVQQVIENHIL 159
Score = 32.8 bits (76), Expect = 0.058
Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 41/137 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ + + S+L A +++ +LLE +I + D LL+A++ +V+ VE
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL G ++ + + A+
Sbjct: 121 LLA-------RGA-------------------------DLTTEADSGYTPMDLAVALGYR 148
Query: 179 ELINILLEY--NIQVKD 193
++ ++ + + +
Sbjct: 149 KVQQVIENHILKLFQSN 165
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 50.1 bits (121), Expect = 5e-08
Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 63/204 (30%)
Query: 75 RSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKI 126
L+ A + ++E + L N + + L A V VE LL+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 63
Query: 127 HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLE 186
HG +++ D L A + E+ +L++
Sbjct: 64 --HGA-------------------------DVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 187 Y--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPD 239
+ + V D L A + E ++LL+ HG +R +
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-------HGA--DPTKKNRDGN----- 142
Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
TPL L + +I +L A
Sbjct: 143 -TPLDLVKD-GDTDIQDLLRGDAA 164
Score = 44.3 bits (106), Expect = 7e-06
Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 45/160 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
N ++ + L A + ++ LL++ ++ KD L +A + E E+
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
L++ HG +N D + L A
Sbjct: 94 LVK-------HGA-------------------------VVNVADLWKFTPLHEAAAKGKY 121
Query: 179 ELINILLEY--NIQVKDAL----LHAIKEEYVEAVEILLE 212
E+ +LL++ + K+ L +K+ + ++L
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRG 161
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 49.4 bits (119), Expect = 2e-07
Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 62/201 (30%)
Query: 78 LIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVH 129
+ N + + L+ ++ D L A +E VE+L+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-------R 61
Query: 130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-- 187
G IN ++ + + L A + + +++ LL+Y
Sbjct: 62 GA-------------------------RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 188 NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITP 242
+I + L +A + E L+ +G ++ P
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQVAEDLVA-------NGA--LVSICNKYGEM------P 141
Query: 243 LILAAHMNNYEILKILLDRGA 263
+ A + + G
Sbjct: 142 VDKAKAPLRELLRERAEKMGQ 162
Score = 46.3 bits (111), Expect = 2e-06
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 59/173 (34%)
Query: 101 KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINC 160
D + +E AV + L+ + + ++N
Sbjct: 6 MDDIFTQCREGNAVAVRLWLD-------NTEN------------------------DLNQ 34
Query: 161 VDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEW 213
D S L A ++ +L+ I V + L A + + V+ LL++
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 214 EEKIHV---HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ I+ HG PL A ++ + L+ GA
Sbjct: 95 KADINAVNEHGN------------------VPLHYACFWGQDQVAEDLVANGA 129
Score = 40.1 bits (95), Expect = 2e-04
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 46/161 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D S L A ++ +L+ I V + L A + + V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ + +IN V+ L A
Sbjct: 91 LLQ-------YK-------------------------ADINAVNEHGNVPLHYACFWGQD 118
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
++ L+ + + + + A E +
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 49.6 bits (119), Expect = 2e-07
Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 57/208 (27%)
Query: 66 NINCVDPLNRSSLIAAIENENIELI--NILLEYNIQVKDALLHAIKEEYVEAVEILLEWE 123
+I + ++ ++ LI N + E + + L A K + + L+
Sbjct: 37 DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD-- 94
Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINI 183
+ +N +D ++L A + +++ +
Sbjct: 95 -----NR-------------------------VGVNGLDKAGSTALYWACHGGHKDIVEM 124
Query: 184 LLEY---NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSST 235
L + ++ AL A + Y + V++LL G + +
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-------KGA--RTDLRNIEKKL 175
Query: 236 FTPDITPLILAAHMNNYEILKILLDRGA 263
+A + +LK A
Sbjct: 176 ------AFDMATNAACASLLKKKQGTDA 197
Score = 46.9 bits (112), Expect = 1e-06
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 29/170 (17%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDEL--KDQPEVFNINC 160
+ A+ + L G + T + +
Sbjct: 15 KVFRALYTFEPRTPDELYI------EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 161 VDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEW 213
+ L A + N+ + L+ + D AL A + + VE+L
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT- 127
Query: 214 EEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ I + ++ T L AA +I+++LL +GA
Sbjct: 128 QPNIEL-------NQQNKL------GDTALHAAAWKGYADIVQLLLAKGA 164
Score = 27.6 bits (62), Expect = 4.3
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 40/137 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY---NIQVKD-----ALLHAIKEEYVEAVE 117
+N +D ++L A + +++ +L + ++ AL A + Y + V+
Sbjct: 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157
Query: 118 ILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENEN 177
+LL G + + + + A
Sbjct: 158 LLLA-------KGA-------------------------RTDLRNIEKKLAFDMATNAAC 185
Query: 178 IELINILLEYNIQVKDA 194
L+ + +
Sbjct: 186 ASLLKKKQGTDAVRTLS 202
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 48.3 bits (115), Expect = 6e-07
Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 46/220 (20%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
D +R++L A + E++ LL+ + KD L A E V+
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF--------NINCVDPLNRSSLI 170
LL G + N+ + K++ E+ N + D + +++
Sbjct: 92 LLV-------KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Query: 171 AAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQP 223
A N+++++ILL Y + ++D L A EE VE + L+ I++ +
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK- 203
Query: 224 YSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ TPL +A ++ L G
Sbjct: 204 --------------EEKTPLQVAK--GGLGLILKRLAEGE 227
Score = 39.5 bits (92), Expect = 5e-04
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 24/114 (21%)
Query: 159 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILL 211
CV N A + EL +L D AL A + E VE LL
Sbjct: 3 GCVS--NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 212 EWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
+ + D + +PL +AA EI+K LL +GA +
Sbjct: 61 QLGVPV---------NDKDDA------GWSPLHIAASAGXDEIVKALLVKGAHV 99
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 46.2 bits (111), Expect = 2e-06
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
++N D + L A N ++E++ +LL+ ++ D L A ++E VE+
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
LL+ +G A D TPL LAA + EI+++LL GA
Sbjct: 99 LLK-------NGA--DVNANDME------GHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 45.0 bits (108), Expect = 4e-06
Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 61/196 (31%)
Query: 78 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
L+ A + + IL+ ++ +D L A ++E VE+LL+ +G
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-------NG 70
Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 188
++N VD + L A ++E++ +LL+ +
Sbjct: 71 A-------------------------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 189 IQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPL 243
+ D L A ++E VE+LL+ + A D+ T
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV---------NAQDKFGKT------AF 150
Query: 244 ILAAHMNNYEILKILL 259
++ N ++ +IL
Sbjct: 151 DISIDNGNEDLAEILQ 166
Score = 42.7 bits (102), Expect = 2e-05
Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 46/161 (28%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D + L A N ++E++ +LL+ ++ D L A ++E VE+
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ +G ++N D + L A ++
Sbjct: 99 LLK-------NGA-------------------------DVNANDMEGHTPLHLAAMFGHL 126
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
E++ +LL+ ++ +D A +I + EIL +
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 41.2 bits (98), Expect = 7e-05
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L+ A + + IL+ ++ +D L A ++E VE+LL+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---- 73
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
AVD + +TPL LAA + EI+++LL GA
Sbjct: 74 -----NAVDHA------GMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 33.5 bits (78), Expect = 0.028
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 182 NILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
+ + + LL A + + V IL+ +G A D S T
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMA-------NGADV--NAEDAS------GWT 49
Query: 242 PLILAAHMNNYEILKILLDRGA 263
PL LAA + EI+++LL GA
Sbjct: 50 PLHLAAFNGHLEIVEVLLKNGA 71
Score = 33.5 bits (78), Expect = 0.033
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 39/130 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N VD + L A ++E++ +LL+ ++ D L A ++E VE+
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ +G ++N D +++ +I+N N
Sbjct: 132 LLK-------NGA-------------------------DVNAQDKFGKTAFDISIDNGNE 159
Query: 179 ELINILLEYN 188
+L IL + N
Sbjct: 160 DLAEILQKLN 169
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 47.1 bits (112), Expect = 2e-06
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 165 NRSSLIAAIENENIELINILLEY---------NIQVKD------ALLHA---IKEEYVEA 206
+R S+ A+ N + + LL + + + KD LL A + +
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72
Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ +LL+ K A S T L +A N ++ +L++ GA
Sbjct: 73 IALLLDVARKTDS--LKQFVNASYTDSYYK--GQTALHIAIERRNMTLVTLLVENGA 125
Score = 46.7 bits (111), Expect = 2e-06
Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 69/278 (24%)
Query: 31 ALTPQEKRF-----LLVAERGDCATVRKMLDELKDQPE-VFNINCVDP-LNRSSLIAAIE 83
A + + + +C + +L L+ + + + DP ++ L+ A+
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 84 NE---NIELINILLEY-----------NIQVKD-------ALLHAIKEEYVEAVEILLEW 122
N + I +LL+ N D AL AI+ + V +L+E
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE- 122
Query: 123 EEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELIN 182
+G + G D + L A + ++
Sbjct: 123 ------NGADVQAAANG-----------DFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165
Query: 183 ILLEY-----NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIH-------VHGQPYS 225
LL+ +I +D L ++ +H
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225
Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
E +R +TPL LAA +L +L R
Sbjct: 226 EEITNRK------GLTPLALAASSGKIGVLAYILQREI 257
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 45.0 bits (108), Expect = 2e-06
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
++N D R+ L A N ++E++ +LLE ++ KD L A + ++E V++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
LLE + A D++ TPL LAA + E++K+LL+ GA
Sbjct: 87 LLEAGADV---------NAKDKNGR------TPLHLAARNGHLEVVKLLLEAGA 125
Score = 43.5 bits (104), Expect = 6e-06
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L A N ++E++ +LLE ++ KD L A + ++E V++LLE +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---- 61
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A D++ TPL LAA + E++K+LL+ GA
Sbjct: 62 -----NAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 34.6 bits (81), Expect = 0.010
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
TPL LAA + E++K+LL+ GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA 26
Score = 34.2 bits (80), Expect = 0.010
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
L A + ++E V++LLE + A D++ TPL LAA + E
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADV---------NAKDKN------GRTPLHLAARNGHLE 49
Query: 254 ILKILLDRGA 263
++K+LL+ GA
Sbjct: 50 VVKLLLEAGA 59
Score = 30.0 bits (69), Expect = 0.37
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D R+ L A N ++E++ +LLE ++ KD L A + ++E V++
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 119 LLE 121
LLE
Sbjct: 120 LLE 122
Score = 29.6 bits (68), Expect = 0.48
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D R+ L A N ++E++ +LLE ++ KD L A + ++E V++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 119 LLE 121
LLE
Sbjct: 87 LLE 89
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 45.5 bits (109), Expect = 2e-06
Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 76/202 (37%)
Query: 78 LIAAIENENIELINILLEYNIQV-KD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQ 131
L+ A + + IL+ D L A + + E+LL G
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-------AGV 58
Query: 132 PYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NI 189
+ + ++R+ L A + ++ +LL++ ++
Sbjct: 59 -------------------------SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 190 QVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI---- 240
KD AL A + + E VE+L++ +G D+
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIK-------YG----------------ADVHTQS 130
Query: 241 ----TPLILAAHMNNYEILKIL 258
T ++ N ++ +IL
Sbjct: 131 KFCKTAFDISIDNGNEDLAEIL 152
Score = 44.7 bits (107), Expect = 4e-06
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 47/159 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
D L S L A + + +LL + + L A E + VE+
Sbjct: 27 PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ HG ++N D L ++L A E+ +
Sbjct: 86 LLK-------HGA-------------------------DVNAKDMLKMTALHWATEHNHQ 113
Query: 179 ELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEIL 210
E++ +L++Y ++ + A +I + EIL
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 44.7 bits (107), Expect = 5e-06
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 55/168 (32%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
LL A + + V IL+ +G P+ ++ G +
Sbjct: 5 KLLEAARAGQDDEVRILMA-------NGAPFTTDWLGTS--------------------- 36
Query: 163 PLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEE 215
PL+ +AA + +LL + + L A E + VE+LL+
Sbjct: 37 PLH----LAAQYG-HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK--- 88
Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
HG A D T L A N+ E++++L+ GA
Sbjct: 89 ----HGA--DVNAKDMLKM------TALHWATEHNHQEVVELLIKYGA 124
Score = 32.4 bits (75), Expect = 0.071
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L+ AA + ++IL+ GA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGA 26
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 45.7 bits (109), Expect = 5e-06
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 23/114 (20%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
+ +PL + L+ + +L+ ++ + + + AL +A+ + E V+
Sbjct: 30 RVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
L++ G + A D TPL AA NN ++ K L++ GA
Sbjct: 89 LVQ-------FG--VNVNAADSD------GWTPLHCAASCNNVQVCKFLVESGA 127
Score = 44.1 bits (105), Expect = 1e-05
Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 57/202 (28%)
Query: 75 RSSLIAAIENENIELINILLEY--NIQVKD----ALLHAIKEEYVEAVEILLEWEEKIHV 128
+ SL + + + + ++ LL + E + V+ ++
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY------- 58
Query: 129 HGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY- 187
+ + + ++L A+ + E++ L+++
Sbjct: 59 EVD-------------------------DPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 188 -NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
N+ D L A V+ + L+E + A+ S T
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---------FAMTYSDM-QTA--A 141
Query: 242 PLILAAHMNNYEILKILLDRGA 263
+ + L
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQE 163
Score = 41.1 bits (97), Expect = 1e-04
Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 65/208 (31%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ +PL + L+ + +L+ ++ + + + AL +A+ + E V+
Sbjct: 30 RVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
L++ G N+N D + L A N+
Sbjct: 89 LVQ-------FGV-------------------------NVNAADSDGWTPLHCAASCNNV 116
Query: 179 ELINILLEY--NIQVKD--------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
++ L+E + ++E Y + + L +EK+
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM---------GI 167
Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILK 256
+++ I L N+ E+
Sbjct: 168 MNKG------VIYALWDYEPQNDDELPM 189
Score = 31.8 bits (73), Expect = 0.15
Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 238 PDI---TPLILAAHMNNYEILKILLDRGA 263
P+I L N + + G
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGM 29
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 44.0 bits (105), Expect = 5e-06
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 24/115 (20%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 208
+ N ++ R + + + ++ +LL + D + A +E +++ +
Sbjct: 37 DPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+L ++ + D P+ LA + +I + L
Sbjct: 96 VLHRAGARL---------DVCDAWGRL------PVDLAEEQGHRDIARYLHAATG 135
Score = 36.7 bits (86), Expect = 0.002
Identities = 22/162 (13%), Positives = 46/162 (28%), Gaps = 48/162 (29%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
I+ + + + L A +E + LLE + + + + + E+
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSS-LIAAIENEN 177
LL HG NC DP + + A
Sbjct: 63 LLL-------HGA-------------------------EPNCADPATLTRPVHDAAREGF 90
Query: 178 IELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLE 212
++ + +L + V D + A ++ + + L
Sbjct: 91 LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
Score = 34.3 bits (80), Expect = 0.011
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L AA E ++ LL+ GA
Sbjct: 14 AGLATAAARGQVETVRQLLEAGA 36
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 44.0 bits (105), Expect = 6e-06
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVE 208
N N + R + + + + +LL + D + A +E +++ +
Sbjct: 37 NPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+L ++ + D P+ LA + + ++ + L
Sbjct: 96 VLHRAGARL---------DVRDAWGRL------PVDLAEELGHRDVARYLRAAAG 135
Score = 35.9 bits (84), Expect = 0.005
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 21/80 (26%)
Query: 188 NIQVKD---ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYSWEAVDRSSSTFTPDITPL 243
++ L A VE V LLE G P A + P+
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLE-------AGANP---NAPNSY------GRRPI 49
Query: 244 ILAAHMNNYEILKILLDRGA 263
+ M + + ++LL GA
Sbjct: 50 QVMM-MGSARVAELLLLHGA 68
Score = 30.5 bits (70), Expect = 0.33
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 66 NINCVDPLNRSS-LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
NC DP + + A ++ + +L + V+D + A + + +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 118 ILLE 121
L
Sbjct: 129 YLRA 132
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 45.2 bits (107), Expect = 7e-06
Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 79/249 (31%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVF-----NINCVDPLNRSSLIAAIENENIELINILL 94
+L + G A + +L KD S+L AIE +++ + +L+
Sbjct: 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110
Query: 95 EY--NIQVKD------------------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYV 134
E ++ ++ L A + + V LLE +
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE-------NPHQPA 163
Query: 135 SENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDA 194
++ D L + L A + + N A
Sbjct: 164 ----------------------SLEATDSLGNTVLHALVMIAD----------NSPENSA 191
Query: 195 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEI 254
L+ + + ++ L + E + +TPL LAA EI
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLE---------EISNHQ------GLTPLKLAAKEGKIEI 236
Query: 255 LKILLDRGA 263
+ +L R
Sbjct: 237 FRHILQREF 245
Score = 42.1 bits (99), Expect = 7e-05
Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 71/210 (33%)
Query: 74 NRSSLIAAIENENIELINILLEY----------NIQVKD-----ALLHAIKEEY---VEA 115
+R L + + E + LLEY + + L+ A+
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
+ LL+ ++ L + S+L AIE
Sbjct: 62 IMPLLQIDKDSGN-----------------PKPLVNA----QCTDEFYQGHSALHIAIEK 100
Query: 176 ENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
+++ + +L+E ++ ++ + H Y E
Sbjct: 101 RSLQCVKLLVENGADVHLRAC-----------------GRFFQKHQGTCFYFGE------ 137
Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
PL LAA ++++ LL+
Sbjct: 138 -------LPLSLAACTKQWDVVTYLLENPH 160
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 43.6 bits (104), Expect = 8e-06
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L A +I + LL+ + VKD L A +++ VE+LL+ H
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-------HK 66
Query: 222 QPYSWEA-VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A V+ + + +PL AA + +I+K+LL GA
Sbjct: 67 ------ALVNTTGYQ---NDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 40.9 bits (97), Expect = 7e-05
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
+ N D + L A + +++++ +LL++ + L A K +V+ V++
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
LL +G S AV+ P+ + +L + +
Sbjct: 95 LLS-------YGA--SRNAVNIFGLR------PVDYTDDESMKSLLLLPEKNES 133
Score = 33.2 bits (77), Expect = 0.028
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
T L +A+ + ++ LL G+
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGS 34
Score = 32.8 bits (76), Expect = 0.045
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+N N S L A +N +++++ +LL Y + + + + E + +
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Query: 119 LLE 121
+
Sbjct: 128 PEK 130
Score = 29.3 bits (67), Expect = 0.74
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ N D + L A + +++++ +LL++ + L A K +V+ V++
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 119 LLEWEEKIHVHG-QPYVSENKGRT 141
LL +G G
Sbjct: 95 LLS-------YGASRNAVNIFGLR 111
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 44.0 bits (104), Expect = 2e-05
Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 70/210 (33%)
Query: 74 NRSSLIAAIENENIELINILLEY------NIQVKD---------ALLHA---IKEEYVEA 115
NR L + + + + LL + + ++ L A + +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
+ ILL+ EK + S V +++L AIE
Sbjct: 65 IPILLDIAEKTGNMREFINS---------------------PFRDVYYRGQTALHIAIER 103
Query: 176 ENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSS 233
+ +L+E ++ + + E G+
Sbjct: 104 RCKHYVELLVEKGADVHAQA-----------RGRFFQPKDEGGYFYFGE----------- 141
Query: 234 STFTPDITPLILAAHMNNYEILKILLDRGA 263
PL LAA N I+ L + G
Sbjct: 142 -------LPLSLAACTNQPHIVHYLTENGH 164
Score = 41.7 bits (98), Expect = 9e-05
Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 80/250 (32%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVF-----NINCVDPLNRSSLIAAIENENIELINILL 94
LL G T+ +LD + + V +++L AIE + +L+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 95 EY--NIQVKD-------------------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPY 133
E ++ + L A V L E +G
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE-------NGHKQ 166
Query: 134 VSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 193
++ D + L A + + N ++ ++ D
Sbjct: 167 A----------------------DLRRQDSRGNTVLHALVAIADNTRENT--KFVTKMYD 202
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
LL + E ++ G +PL++AA
Sbjct: 203 LLL-----IKCAKLFPDTNLEALLNNDGL------------------SPLMMAAKTGKIG 239
Query: 254 ILKILLDRGA 263
I + ++ R
Sbjct: 240 IFQHIIRREI 249
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 41.6 bits (99), Expect = 2e-05
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L A +N + E + LL ++ + L A K + E V++LL G
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-------KG 65
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A + +T P LA ++EI+K+L +GA
Sbjct: 66 A--DVNARSKDGNT------PEHLAKKNGHHEIVKLLDAKGA 99
Score = 35.4 bits (83), Expect = 0.004
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
L +A K + E V+ LL G A + TPL LAA + E
Sbjct: 12 PLHNAAKNGHAEEVKKLLS-------KG--ADVNARSKD------GNTPLHLAAKNGHAE 56
Query: 254 ILKILLDRGA 263
I+K+LL +GA
Sbjct: 57 IVKLLLAKGA 66
Score = 29.7 bits (68), Expect = 0.32
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N + L A +N + E++ +LL ++ + A K + E V++
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Query: 119 LLE 121
L
Sbjct: 94 LDA 96
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 41.6 bits (99), Expect = 3e-05
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L+ A + + IL+ ++ KD L A ++E VE+LL+ +G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-------NG 70
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
AVD TPL LAA + + EI ++LL GA
Sbjct: 71 A--DVNAVDAI------GFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 41.2 bits (98), Expect = 5e-05
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 70/184 (38%)
Query: 91 NILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELK 150
+ + + LL A + + V IL+ +G
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMA-------NGA------------------- 38
Query: 151 DQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEY 203
++N D + L A + ++E++ +LL+ ++ D L A +
Sbjct: 39 ------DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 204 VEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEIL 255
+E E+LL+ HG D+ T ++ N ++
Sbjct: 93 LEIAEVLLK-------HG----------------ADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 256 KILL 259
+IL
Sbjct: 130 EILQ 133
Score = 39.3 bits (93), Expect = 2e-04
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 39/130 (30%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D + L A + ++E++ +LL+ ++ D L A ++E E+
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
LL+ HG ++N D +++ +I N N
Sbjct: 99 LLK-------HGA-------------------------DVNAQDKFGKTAFDISIGNGNE 126
Query: 179 ELINILLEYN 188
+L IL + N
Sbjct: 127 DLAEILQKLN 136
Score = 38.9 bits (92), Expect = 3e-04
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 46/149 (30%)
Query: 78 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
L+ A + + IL+ ++ KD L A ++E VE+LL+ +G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-------NG 70
Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 188
++N VD + + L A ++E+ +LL++ +
Sbjct: 71 A-------------------------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 189 IQVKD-----ALLHAIKEEYVEAVEILLE 212
+ +D A +I + EIL +
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 34.3 bits (80), Expect = 0.012
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 182 NILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDIT 241
+ + + LL A + + V IL+ +G A D +T
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMA-------NGADV--NAKDEY------GLT 49
Query: 242 PLILAAHMNNYEILKILLDRGA 263
PL LA + EI+++LL GA
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGA 71
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 40.4 bits (96), Expect = 4e-05
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 22/105 (20%)
Query: 166 RSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIH 218
R+ L A N ++E++ +LLE ++ KD L A + ++E V++LLE +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV- 61
Query: 219 VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A D++ T PL LAA + E++K+LL+ GA
Sbjct: 62 --------NAKDKNGRT------PLHLAARNGHLEVVKLLLEAGA 92
Score = 30.8 bits (71), Expect = 0.12
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N D R+ L A N ++E++ +LLE ++ KD L A + ++E V++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 119 LLE 121
LLE
Sbjct: 87 LLE 89
Score = 30.8 bits (71), Expect = 0.12
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
++N D R+ L A N ++E++ +LLE ++ KD L A + ++E V++
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 210 LLE 212
LLE
Sbjct: 87 LLE 89
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 43.1 bits (101), Expect = 5e-05
Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 52/236 (22%)
Query: 49 ATVRKMLDELKDQ--PEVFNIN-CVDPLNRSSLIAAIENENIELINILLEY--NIQVKD- 102
+ +L E+ D N+N VD + L N+EL+ L+++ N D
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162
Query: 103 ----ALLHAIKE---EYVEAVEILLEWEEKIHVHGQPYVSE--NKGRTIF---MMLDELK 150
L+ A+K E LL+ + P + + RTI ++ +
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLD-------YLYPCLILEDSMNRTILHHIIITSGMT 215
Query: 151 DQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEIL 210
L+ I + I + K+ +E +++
Sbjct: 216 GCSAAAKYYL------DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269
Query: 211 LEWEEKIHV---HGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ +G T L +AA + N I+ LLD GA
Sbjct: 270 WIIANMLNAQDSNGD------------------TCLNIAARLGNISIVDALLDYGA 307
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 40.8 bits (97), Expect = 6e-05
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
+ A++N +++ + + ++ L +A +E +E LL I
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---- 66
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A D+ ITPL+ A + + +K+LL +GA
Sbjct: 67 -----NAPDKH------HITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 35.5 bits (83), Expect = 0.004
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
+ A+K ++ V+ + E + PL AA E
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDV---------NRTLEGGRK------PLHYAADCGQLE 54
Query: 254 ILKILLDRGA 263
IL+ LL +GA
Sbjct: 55 ILEFLLLKGA 64
Score = 33.5 bits (78), Expect = 0.021
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 56/162 (34%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
+ A+K ++ V+ + G ++N
Sbjct: 10 EFMWALKNGDLDEVKDYVA-------KG-------------------------EDVNRTL 37
Query: 163 PLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEE 215
R L A + +E++ LL +I D LL A+ E +V V++LL
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS--- 94
Query: 216 KIHVHG-QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK 256
G T + +L+
Sbjct: 95 ----KGADK---TVKGPDGL------TAFEATDNQAIKALLQ 123
Score = 32.0 bits (74), Expect = 0.058
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
++N R L A + +E++ LL +I D LL A+ E +V V++
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91
Query: 119 LLE 121
LL
Sbjct: 92 LLS 94
Score = 29.3 bits (67), Expect = 0.49
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 46/145 (31%)
Query: 78 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 130
+ A++N +++ + + ++ L +A +E +E LL G
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-------KG 63
Query: 131 QPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--N 188
+IN D + + L++A+ ++ + +LL +
Sbjct: 64 A-------------------------DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 189 IQVKD-----ALLHAIKEEYVEAVE 208
VK A + ++
Sbjct: 99 KTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 26.2 bits (59), Expect = 6.4
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVE 117
+IN D + + L++A+ ++ + +LL + VK A + ++
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 40.7 bits (96), Expect = 2e-04
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 25/117 (21%)
Query: 157 NINCVDPLNRS---SLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEA 206
+ + L+ A +E++ ++ + + AL +AI
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 207 VEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
V+ L+ G + + D TPL AA N+ I L+ GA
Sbjct: 70 VDFLIT-------AGA--NVNSPDSH------GWTPLHCAASCNDTVICMALVQHGA 111
Score = 38.8 bits (91), Expect = 9e-04
Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 68/220 (30%)
Query: 66 NINCVDPLNRS---SLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEA 115
+ + L+ A +E++ ++ + + AL +AI
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 116 VEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIEN 175
V+ L+ G N+N D + L A
Sbjct: 70 VDFLIT-------AGA-------------------------NVNSPDSHGWTPLHCAASC 97
Query: 176 ENIELINILLEY--NIQVKD------ALLHA--IKEEYVEAVEILLEWEEKIHVHGQPYS 225
+ + L+++ I A +E Y + L + E+ +
Sbjct: 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-------- 149
Query: 226 WEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
++ + + L + + L T+
Sbjct: 150 -GLMN------SGAVYALWDYS-AEFGDELSFREGESVTV 181
Score = 33.0 bits (76), Expect = 0.075
Identities = 23/206 (11%), Positives = 44/206 (21%), Gaps = 65/206 (31%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ + + ++L AI N +++ L+ N+ D L A
Sbjct: 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLN-RSSLIAAIENEN 177
L++ HG I + ++
Sbjct: 106 LVQ-------HG-------------------------AAIFATTLSDGATAFEKCDPYRE 133
Query: 178 --IELINILLEYNIQVKD-------ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
+ L + + AL E E + G+ +
Sbjct: 134 GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFR---------EGESVTVLR 183
Query: 229 VDRSSSTFTPDITPLILAAHMNNYEI 254
D T AA
Sbjct: 184 RDGPEE------TDWWWAALHGQEGY 203
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 39.3 bits (93), Expect = 3e-04
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 23/111 (20%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 209
+ N D S + A ++ + +L+E+ ++ V D + A++E + V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 210 LLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
L D T PL LA +++ IL
Sbjct: 120 LAA-------ESDL---HRRDARGLT------PLELALQRGAQDLVDILQG 154
Score = 35.5 bits (83), Expect = 0.006
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 22/102 (21%)
Query: 169 LIAAIENENIELINILLEY---NIQVKDAL----LHAIKEEYVEAVEILLEWEEKIHVHG 221
L A +++ + LL + + L + LL+ G
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK-------QG 58
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
S D S +P+ AA + LK+L++ GA
Sbjct: 59 A--SPNVQDTS------GTSPVHDAARTGFLDTLKVLVEHGA 92
Score = 30.8 bits (71), Expect = 0.24
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY-NIQVKD-----ALLHAIKEEYVEAVEIL 119
++N D + A++ + +++ L ++ +D L A++ + V+IL
Sbjct: 93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 120 LE 121
Sbjct: 153 QG 154
Score = 30.1 bits (69), Expect = 0.38
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ N D S + A ++ + +L+E+ ++ V D + A++E + V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 119 LLEWEEKIHVHGQPYVSENKGRT 141
L + + +G T
Sbjct: 120 LAA-------ESDLHRRDARGLT 135
Score = 27.0 bits (61), Expect = 4.9
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 241 TPLILAAHMNNYEILKILLDRG 262
L AA + + ++ LL R
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRE 25
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 37.6 bits (88), Expect = 5e-04
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 172 AIENENIELINILLEY--NIQVKD--ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWE 227
+ + + L+ ++ LL A + + V IL+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---------A 51
Query: 228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
A D++ TPL LAA + E++K+LL+ GA
Sbjct: 52 AKDKN------GSTPLHLAARNGHLEVVKLLLEAGA 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 47/222 (21%)
Query: 95 EYNIQVKDALLHAIKEEYVEAVEI---------LLEWEEKIHVHGQPYVSENKGRTIFMM 145
E+ Q KD +L ++ +V+ + +L EE H+ R + +
Sbjct: 13 EHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 146 LDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDAL---------L 196
L + ++ + F + V +N L++ I+ E + + Y I+ +D L
Sbjct: 72 LSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKY 129
Query: 197 HAIKEEYVEAV-EILLEW--EEKIHVHGQP---YSWEAVD--RSSS------------TF 236
+ + + + + LLE + + + G +W A+D S
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 237 TPDITPLILAAHMNN--YEI---LKILLDRGATLPMP-HDVR 272
+P + + Y+I D + + + H ++
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Score = 35.6 bits (81), Expect = 0.015
Identities = 31/283 (10%), Positives = 85/283 (30%), Gaps = 97/283 (34%)
Query: 50 TVRKMLDELKDQPEVFNINCVDPLN------RSSLIA-AIENENIEL--------INI-- 92
+R+ L EL+ V ++ ++ + + ++ +N+
Sbjct: 139 KLRQALLELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 93 ------LLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFM-- 144
+LE +Q LL+ I + + + +IH + + R +
Sbjct: 192 CNSPETVLE-MLQ---KLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELRRLLKSK 241
Query: 145 -------MLDELKDQPEV---FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDA 194
+L +++ + FN++C L+ + + ++ +I +
Sbjct: 242 PYENCLLVLLNVQN-AKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 195 LLHAIKEEYVEAVEILLEW---------EE--KIH----------VHGQPYSWE-----A 228
+ + E +LL++ E + + +W+
Sbjct: 295 SMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDV 271
D+ ++ + L A + ++ L + P
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PPSA 385
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.032
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 54/138 (39%)
Query: 41 LVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELI--------NI 92
+V RG T++ + + + + ++P + A+ E ++ +
Sbjct: 1785 VVFYRGM--TMQVAVPRDELGRSNYGMIAINP---GRVAASFSQEALQYVVERVGKRTGW 1839
Query: 93 LLE---YNI---QVKDALLHAIKEEYV-----EAVEILLEWEEKIHVHGQPYVSENKGRT 141
L+E YN+ Q YV A++ + ++ K +
Sbjct: 1840 LVEIVNYNVENQQ------------YVAAGDLRALDTVTN-----------VLNFIKLQK 1876
Query: 142 I-------FMMLDELKDQ 152
I + L+E++
Sbjct: 1877 IDIIELQKSLSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 0.21
Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 83/215 (38%)
Query: 100 VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVS-ENKGRTIF-------------MM 145
+ + + ++YV L +++ + S N G +
Sbjct: 341 ISNLTQEQV-QDYVNKTNSHLPAGKQVEI------SLVN-GAKNLVVSGPPQSLYGLNLT 392
Query: 146 LDELK-----DQ---------PEVFN----INCVDPLNRSSLIAAIENENIELINILLEY 187
L + K DQ + N + P + L+ A + N +L+ + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS--PFHSHLLVPASDLINKDLVKNNVSF 450
Query: 188 N-----IQV------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSST- 235
N I V D ++ E +++ ++ V WE + +T
Sbjct: 451 NAKDIQIPVYDTFDGSD-----LRVLSGSISERIVDCIIRLPVK-----WETTTQFKATH 500
Query: 236 ---FTP----DITPL------------ILAAHMNN 251
F P + L I+A ++
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 31.2 bits (70), Expect = 0.45
Identities = 35/240 (14%), Positives = 73/240 (30%), Gaps = 77/240 (32%)
Query: 56 DELKDQPEVFNINCVDPLNRSSLIAAIENE---NIELINILLEYNIQVKDALLHAIKEEY 112
+L++Q FN +P A ++E EL+ L Y V + + ++
Sbjct: 31 SQLQEQ---FNKILPEPTEGF----AADDEPTTPAELVGKFLGY---VSSLVEPSKVGQF 80
Query: 113 VEAVEILL-EWEEK------IH--VHGQPYVSENKGRTIFMML------DELKDQPEVFN 157
+ + + L E+E IH ++ ++ + +P
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP---- 136
Query: 158 INCVDPLNRSSLIAAIENENIELINILLEYNI---QVKDALLHAIKEEYVEAVEILLEWE 214
D + S+L A+ N +L I Q ++Y +E
Sbjct: 137 ---FDKKSNSALFRAVGEGNAQL------VAIFGGQ-------GNTDDY---------FE 171
Query: 215 E--KIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHDVR 272
E ++ T+ + LI + E+++ LD ++
Sbjct: 172 ELRDLY---------------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Score = 30.8 bits (69), Expect = 0.52
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 27/136 (19%)
Query: 135 SENKGRTIFMMLDELKDQPEVFNI-NCVDPLNRSSL---IAAIENENIELINILLEYNIQ 190
S+ +G M +D K ++ N D + + I I N + I +
Sbjct: 1626 SQEQG----MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI---HFGG 1678
Query: 191 VKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSS-TFTPD-----IT--- 241
K I+E Y ++ E + + E + S+S TF + T
Sbjct: 1679 EKG---KRIRENYSA---MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 242 -PLILAAHMNNYEILK 256
P + +E LK
Sbjct: 1733 QPALTLMEKAAFEDLK 1748
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 32.6 bits (74), Expect = 0.11
Identities = 25/223 (11%), Positives = 56/223 (25%), Gaps = 48/223 (21%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 102
AE G + L EL I + + AA+ + +IN LL+ + +
Sbjct: 171 AENGHLHVL-NRLCELAPTEATAMIQAEN--YYAFRWAAVGRGHHNVINFLLDCPVMLAY 227
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
A +H + + ++
Sbjct: 228 AEIHEFEYGEKYVNPFIARHVNRLKE---------------------------------- 253
Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
+ + + +L+ L + I+ ++ + +
Sbjct: 254 --MHDAFKLSNPDGVFDLVTKSECLQGFY--MLRNLIRRNDEVLLDDIRFLLSIPGI-KA 308
Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATL 265
+ ++ L LA + N +LL + L
Sbjct: 309 LAPTATIPGDANE------LLRLALRLGNQGACALLLSIPSVL 345
Score = 31.5 bits (71), Expect = 0.31
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 18/96 (18%)
Query: 171 AAIENENIELINILLEYNIQVKDALLHAIK---EEYVEAVEILLEWEEKIHVHGQPYSWE 227
A +L + + I+ + A ++ + +LL +E + +
Sbjct: 72 AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV---------K 122
Query: 228 AVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ + LAA + +L L +
Sbjct: 123 VIQAE------NYQAFRLAAENGHLHVLNRLCELAP 152
Score = 28.0 bits (62), Expect = 3.3
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 17/118 (14%)
Query: 148 ELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKDALLHAIKEEYVE 205
+L+ P + N ++ ++ + E I+I L N++ LL Y
Sbjct: 17 QLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 76
Query: 206 AVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+ L K + + + A + + + L +LL
Sbjct: 77 NAKQLWSDAHKKGIKSEVICFVA---------------AITGCSSALDTLCLLLTSDE 119
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 32.3 bits (73), Expect = 0.13
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY-------NIQVKDALLHAIKEEYVEAVEI 118
+++ ++L A + + +LL+ N + AL A K+ + E E+
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 119 LLE 121
L +
Sbjct: 278 LEQ 280
Score = 32.3 bits (73), Expect = 0.13
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY-------NIQVKDALLHAIKEEYVEAVEI 209
+++ ++L A + + +LL+ N + AL A K+ + E E+
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 210 LLE 212
L +
Sbjct: 278 LEQ 280
Score = 30.0 bits (67), Expect = 0.71
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
T L AA N + LK+LL A
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRA 250
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
endoplasmic reticulum, hydrolase, membrane,
transmembrane; 1.96A {Saccharomyces cerevisiae}
Length = 505
Score = 32.2 bits (72), Expect = 0.19
Identities = 17/131 (12%), Positives = 50/131 (38%), Gaps = 8/131 (6%)
Query: 82 IENENIELINILLEYNIQVKDALLHAI-KEEYVEAVEILLEWEEKIHVHGQPYVSENKGR 140
++ +++ L + I H ++ V++L++ EK+ +
Sbjct: 315 VKEGYESVVHALNDPKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLS-NEDFFHKVID 373
Query: 141 TIFMMLDELKDQPEVFNINCVDPLNRSSLI------AAIENENIELINILLEYNIQVKDA 194
+ ++ + +Q V NC+D L+R++++ ++ E + +
Sbjct: 374 SNGNTVEIVNEQHSVVRTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATGSTWEDNAP 433
Query: 195 LLHAIKEEYVE 205
LL + + + +
Sbjct: 434 LLTSYQNLWAD 444
Score = 29.9 bits (66), Expect = 0.88
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 53 KMLDELKDQPEVFNINCVDPLNRSSLI------AAIENENIELINILLEYNIQVKDALLH 106
++ + +Q V NC+D L+R++++ ++ E + + LL
Sbjct: 377 NTVEIVNEQHSVVRTNCMDCLDRTNVVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLT 436
Query: 107 AIKEEYVE 114
+ + + +
Sbjct: 437 SYQNLWAD 444
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 30.0 bits (67), Expect = 0.69
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
T L +N E LK+LL A
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKA 229
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 28.6 bits (63), Expect = 2.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNI 67
A R D + L L D P + +
Sbjct: 230 AIRYDENVIGNHLRMLADDPAMQRL 254
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 28.2 bits (62), Expect = 2.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
PL A + + + + L RGA
Sbjct: 270 GPLHHATILGHTGLACLFLKRGA 292
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 27.9 bits (62), Expect = 3.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 241 TPLILAAHMNNYEILKILLDRGATL 265
T L AA N + LK+LL A +
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALV 233
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 27.5 bits (60), Expect = 5.9
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 49 ATVRKMLDELKDQPEV--FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLH 106
T+RK+ + KD+ IN N +++I I + L+
Sbjct: 59 VTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE 118
Query: 107 AIKEEYVEAVEILLE 121
++E + +L +
Sbjct: 119 HLRERDLYMFLVLDD 133
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 27.0 bits (60), Expect = 7.1
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 36/125 (28%)
Query: 32 LTPQEKRFL-----LVAERGDCATV---RKMLD---ELKDQPEVFNI-NCVDPLNRSSLI 79
L Q + L+ E G T +M ELK+ +FN+ N + R +L
Sbjct: 2 LDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKE---IFNMSNQRNGDQREALF 58
Query: 80 AAIEN--ENIELINILLE------------------YNIQVKDALLHAIKEEYVEAVEIL 119
AI NIE + LL YNI V + LL + E + E+L
Sbjct: 59 NAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNI-VGEHLLATLDEMFSPGQEVL 117
Query: 120 LEWEE 124
W +
Sbjct: 118 DAWGK 122
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix,
transferase; HET: GOL; 1.65A {Escherichia coli} SCOP:
a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Length = 618
Score = 27.0 bits (59), Expect = 7.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 31 ALTPQEKRFLLV---AERGDCATVRKMLDELKDQP 62
+L Q R+ + + V +M+ LKD P
Sbjct: 2 SLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYP 36
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.2 bits (60), Expect = 7.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 216 KIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
++H+ G + + P TPLI
Sbjct: 802 RLHLAGVSVNPNGLFPPVEFPAPRGTPLIS 831
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 26.7 bits (60), Expect = 7.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 28 VEVALTPQEKRFLLVAERGDCATVRKMLDELKDQP 62
+E+ LTP E++ L + V + L + P
Sbjct: 287 LELDLTPLEQKLLGES----INEVNTISKVLDNAP 317
>2iai_A Putative transcriptional regulator SCO3833; structural genomics,
TETR, unknow function, PSI-2, protein structure
initiative; 1.65A {Streptomyces coelicolor}
Length = 230
Score = 26.6 bits (59), Expect = 8.1
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 5 DSKEELLGSVHNIARQDY--CVDAPVEVALTPQEK-----RFLLVAERGDCATVRKMLDE 57
KEELL + A + +D T E+ R ++ + V +L
Sbjct: 72 TGKEELLRRAVSRALDELFGILDEEHARVGTAAERLEYVVRRMVEVLMAELPYVTLLLRV 131
Query: 58 LKDQPE 63
+
Sbjct: 132 RGNTGT 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,355,551
Number of extensions: 277591
Number of successful extensions: 1729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 363
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.0 bits)