RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11714
(272 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 55.8 bits (133), Expect = 1e-09
Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 39/247 (15%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQV 100
+ G V+ +L N + + L A + E+ LL+ +
Sbjct: 8 SFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Query: 101 KD-----ALLHAIKEEYVEAVEILLE-WEEKIHVHGQPYVSENKGRTIFMMLDELKDQPE 154
K L A + + V++LLE + + + L +
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121
Query: 155 VFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEEYVEAV 207
+ C+ + L A + + + +LLE + L A+ ++ V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181
Query: 208 EILLE------------------WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHM 249
++LL ++ V + +++ +TPL LAA
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 241
Query: 250 NNYEILK 256
+ E++
Sbjct: 242 GHAEMVA 248
Score = 50.4 bits (119), Expect = 9e-08
Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 16/206 (7%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEI 118
+ N + L A+ + N++++ +LL + L A K+ VE
Sbjct: 157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216
Query: 119 LLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFN-INCVDPLNRSSLIAAIENEN 177
LL++ + V+ + + N + + L + +
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276
Query: 178 IELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFT 237
+ + ++L+++ ++ A + + + V V+ +
Sbjct: 277 VPVADVLIKHG-----VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-- 329
Query: 238 PDITPLILAAHMNNYEILKILLDRGA 263
+PL AA + +I+ +LL GA
Sbjct: 330 -GYSPLHQAAQQGHTDIVTLLLKNGA 354
Score = 41.1 bits (95), Expect = 8e-05
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 22/109 (20%)
Query: 169 LIAAIENENIELINILLEY--NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHG 221
L A ++ ++ LL+ + V + L A + + E + LL+ + K++
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--- 60
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
A + D TPL AA + + ++K+LL+ A +
Sbjct: 61 ------AKAKD------DQTPLHCAARIGHTNMVKLLLENNANPNLATT 97
Score = 35.3 bits (80), Expect = 0.006
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 15/70 (21%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
L A ++ V+ LL+ + S + T PL +AA + E
Sbjct: 3 PLHVASFMGHLPIVKNLLQ---------RGASPNVSNVKVET------PLHMAARAGHTE 47
Query: 254 ILKILLDRGA 263
+ K LL A
Sbjct: 48 VAKYLLQNKA 57
Score = 35.3 bits (80), Expect = 0.007
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 240 ITPLILAAHMNNYEILKILLDRGA 263
+TPL +A+ M + I+K LL RGA
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRGA 24
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 47.7 bits (112), Expect = 5e-07
Identities = 26/213 (12%), Positives = 60/213 (28%), Gaps = 21/213 (9%)
Query: 72 PLNRSSLIAAIENENIELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWE 123
N+ + ++ E+ + + + L +E V+ L++
Sbjct: 71 SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130
Query: 124 EKIHVHGQPYVSENKGRTIFMMLDELKDQPEV-----FNINCVDPLNRSSLIAAIENENI 178
S + + + + D +NR+ L I +
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190
Query: 179 ELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
+ +Y + + + + +++ E + + S
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250
Query: 239 DI--------TPLILAAHMNNYEILKILLDRGA 263
+ T L +AA + N I+ LLD GA
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283
Score = 29.6 bits (65), Expect = 0.31
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 65 FNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEE 124
+ D +NR+ L I + + +Y + + + +K++ E E
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI--VKKQNRPIQSGTNEKES 225
Query: 125 KIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINIL 184
K + + + +I LD +N D + L A NI +++ L
Sbjct: 226 KPNDK-----NGERKDSILENLDLKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDAL 278
Query: 185 LEY--NIQVKD 193
L+Y + + +
Sbjct: 279 LDYGADPFIAN 289
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 43.4 bits (101), Expect = 1e-05
Identities = 43/238 (18%), Positives = 87/238 (36%), Gaps = 49/238 (20%)
Query: 74 NRSSLIAAIENENIELINILLEY--NIQVKD------ALLHAIKEEYVEAVEILLEWEEK 125
+ LI A++NE+++L+ LLE N+ ++ L +A++ + VE+LL
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 126 IHVHGQPYVSENKGRTIFMMLDELKDQPEV-FNINCVDPLNRSSLIAAIENENIELINIL 184
+ + + I + LK ++N D ++ + A ++ + L
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 185 LEYNIQVKD-----------------ALLHAIKEEYVEAVEILLE--------------- 212
+ V AL+ A ++ +VE ++ILL+
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 213 WEEKIHVHGQPYSWEAVDRSSSTFTPDI--------TPLILAAHMNNYEILKILLDRG 262
+ EA+ D+ TPLILA + +++ LL++
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Score = 40.7 bits (94), Expect = 9e-05
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 34/161 (21%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
AL+ A ++ +VE ++ILL+ + +N GR + D +V I +
Sbjct: 151 ALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRNALIHALLSSDDSDVEAITHL- 204
Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
L+ + N+ + K L+ A++++++ V+ LLE +E I ++
Sbjct: 205 ------LLDHGADVNVR--------GERGKTPLILAVEKKHLGLVQRLLE-QEHIEIN-- 247
Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
D T L+LA + +I ++L RGA
Sbjct: 248 -----DTDSDGKT------ALLLAVELKLKKIAELLCKRGA 277
Score = 39.2 bits (90), Expect = 3e-04
Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 48 CATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-----NIQVKD 102
++ + + + + ++L+ A E ++E++ ILL+ N
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHG-QPYVSENKGRTIFMMLDELKDQPEV------ 155
I + + HG V +G+T ++ E K V
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 156 --FNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKD 193
IN D +++L+ A+E + ++ +L + + D
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 30.7 bits (68), Expect = 0.14
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 194 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYE 253
L+ A++ E V+ V+ LLE ++ + W TPL A M+ +
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW--------------TPLHNAVQMSRED 53
Query: 254 ILKILLDRGATLPMPH 269
I+++LL GA +
Sbjct: 54 IVELLLRHGADPVLRK 69
Score = 30.7 bits (68), Expect = 0.15
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 239 DITPLILAAHMNNYEILKILLDRGA 263
D LI A + ++++ LL+ GA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGA 29
Score = 29.9 bits (66), Expect = 0.29
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 44 ERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--NIQVK 101
E+ V+++L++ E IN D +++L+ A+E + ++ +L + +
Sbjct: 228 EKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Query: 102 D 102
D
Sbjct: 283 D 283
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 42.4 bits (98), Expect = 3e-05
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 12/225 (5%)
Query: 39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 98
FL GD V ++L+ D IN + ++L A ++N++++ L+E
Sbjct: 44 FLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 99 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNI 158
+ + A L+ E + G + N + + E + E+
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157
Query: 159 NCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIH 218
+ IE E I+L Q ++ L K +
Sbjct: 158 EV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 219 VHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
+A + TPL AAH E +IL++
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Score = 31.2 bits (69), Expect = 0.12
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 208 EILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
E L W P + + D + A + E + LL+RGA
Sbjct: 12 EQLKRWIGSETDLEPPVVKR---KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64
Score = 28.9 bits (63), Expect = 0.58
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKDAL----LHAIKEEYVEAVEIL 119
++N D + L AA E IL+E +++ + + E+ + +E L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Query: 120 LEWEEKIH 127
+ + +H
Sbjct: 284 QKKQNLLH 291
Score = 28.9 bits (63), Expect = 0.58
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--NIQVKDAL----LHAIKEEYVEAVEIL 210
++N D + L AA E IL+E +++ + + E+ + +E L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283
Query: 211 LEWEEKIH 218
+ + +H
Sbjct: 284 QKKQNLLH 291
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 36.8 bits (83), Expect = 0.001
Identities = 16/161 (9%), Positives = 41/161 (25%), Gaps = 7/161 (4%)
Query: 102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCV 161
+ L A +E + LL+ + ++N + + +L + +
Sbjct: 3 NELASAAARGDLEQLTSLLQ-------NNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR 55
Query: 162 DPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHG 221
+ L+ + + E+ + + L +E
Sbjct: 56 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 115
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRG 262
+ T LA E++ ++ G
Sbjct: 116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
Score = 30.2 bits (66), Expect = 0.16
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L AA + E L LL
Sbjct: 3 NELASAAARGDLEQLTSLLQNNV 25
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 37.6 bits (86), Expect = 0.001
Identities = 36/257 (14%), Positives = 71/257 (27%), Gaps = 48/257 (18%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY--- 96
VA C++ L L E + + N + A EN ++ ++N L E
Sbjct: 94 CFVAAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151
Query: 97 ------NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVH------GQPYVSENKGRTIFM 144
+ A A + ++ + L E + GR
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211
Query: 145 MLDELKDQPEVFN------------------INCVDPLN--RSSLIAAIENENIELINIL 184
+++ L D P + V+ L + + + +L+
Sbjct: 212 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 271
Query: 185 LE-YNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPL 243
+ L+ E ++ + LL P ++ + L
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLS---------IPGIKALAPTATIPGDAN-ELL 321
Query: 244 ILAAHMNNYEILKILLD 260
LA + N +LL
Sbjct: 322 RLALRLGNQGACALLLS 338
Score = 31.8 bits (71), Expect = 0.084
Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 29/204 (14%)
Query: 79 IAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENK 138
I IEN + + L I ++ H I + + L ++E IH+ + +
Sbjct: 4 IHNIENYEND-PQLRLIPWILWENLFQHFISANELSLMT--LSYKEAIHIFLPGTKNMEQ 60
Query: 139 GRTIFMMLD---ELKDQPEVFNINCVDPLNRSSLIAAIEN---ENIELINILLEYNIQVK 192
R + + + + + + A ++ + +LL + VK
Sbjct: 61 VRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK 120
Query: 193 -------DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLIL 245
A A + ++ + L E + + + L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAP---------TEIMAMIQA----ENYHAFRL 167
Query: 246 AAHMNNYEILKILLDRGATLPMPH 269
AA + +L L + T
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAM 191
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 37.0 bits (84), Expect = 0.001
Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 40/250 (16%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 102
+ +L ++ + L +++L A + L V
Sbjct: 17 VIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
A ++ + + + + D D
Sbjct: 74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA------- 126
Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
+ + + N E ++ +Q++ +V + E + G
Sbjct: 127 ----PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 223 PYSWEAVDRSSSTFTPDI--------------------------TPLILAAHMNNYEILK 256
+ + + TPL A N + +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 257 ILLDRGATLP 266
+L GA P
Sbjct: 243 LLRAHGAPEP 252
Score = 33.1 bits (74), Expect = 0.022
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
T L LA + L LL A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSA 33
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/168 (7%), Positives = 41/168 (24%), Gaps = 31/168 (18%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
+L A+K + + + T +
Sbjct: 9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA---------------- 52
Query: 163 PLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQ 222
+ +++ ++ +++ L++ + + + + E + +
Sbjct: 53 -------VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 105
Query: 223 PYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGATLPMPHD 270
TPL +A + + ++L + H
Sbjct: 106 SIEIANESGE--------TPLDIAKRLKHEHCEELLTQALSGRFNSHV 145
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 35.9 bits (81), Expect = 0.004
Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 34/249 (13%)
Query: 40 LLVAERGDCATVRKMLDELKDQPEVFNINCVDPLN-RSSLIAAIENENIELINILLEY-- 96
L G A + E ++N +DP + R+ L N + E L+ +
Sbjct: 6 LHTEAAGSYAITEPITRE--------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57
Query: 97 --------NIQVKD-----ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRT-- 141
++ D L+ A+ V L++ ++ + S
Sbjct: 58 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117
Query: 142 ----IFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLH 197
+ + + + + ++A E + LL D
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177
Query: 198 AIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDI---TPLILAAHMNNYEI 254
A K+ L + + + ++ S+ D TP++LAA E+
Sbjct: 178 ARKDSEKYKGRTALHYA-AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236
Query: 255 LKILLDRGA 263
+ L+ +GA
Sbjct: 237 VMYLIQQGA 245
Score = 32.0 bits (71), Expect = 0.053
Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 23/171 (13%)
Query: 97 NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF 156
+ + +L++ K + + V + + + D
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY--------NIQVKDALLHAIKEEYVEAVE 208
+ R++L A + N+ ++ L+ + K ++ A +E +E V
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238
Query: 209 ILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
L++ + AVD + D T LA N++ I+ I
Sbjct: 239 YLIQQGASVE---------AVDAT------DHTARQLAQANNHHNIVDIFD 274
Score = 27.4 bits (59), Expect = 1.7
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEY 96
++ VD + ++ A N + +++I
Sbjct: 246 SVEAVDATDHTARQLAQANNHHNIVDIFDRC 276
Score = 27.4 bits (59), Expect = 1.7
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEY 187
++ VD + ++ A N + +++I
Sbjct: 246 SVEAVDATDHTARQLAQANNHHNIVDIFDRC 276
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 33.3 bits (74), Expect = 0.012
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
L+ AA + ++IL+ GA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGA 26
Score = 33.3 bits (74), Expect = 0.014
Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 12/158 (7%)
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINC-- 160
LL A + + V IL+ +G P+ ++ G + + + +
Sbjct: 5 KLLEAARAGQDDEVRILMA-------NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 161 VDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVH 220
V R+ + + + + + A ++A + A+ E + V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 221 GQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKIL 258
V S T ++ N ++ +IL
Sbjct: 118 LLIKYGADVHTQSKF---CKTAFDISIDNGNEDLAEIL 152
Score = 25.6 bits (54), Expect = 5.3
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINIL 93
+++ +++ +I+N N +L IL
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 33.2 bits (74), Expect = 0.013
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 38 RFLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYN 97
R A RGD VR++L E+ + + ++ +++L + + +L +
Sbjct: 5 RLSGAAARGDVQEVRRLLHR-----ELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59
Query: 98 IQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVF- 156
L + + V + G + + V
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 157 -----NINCVDPLNRSSLIAAIENENIELINILLE 186
+++ D + L A++ +L++IL
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 32.1 bits (71), Expect = 0.032
Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 8/159 (5%)
Query: 102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCV 161
D L A V+ V LL E P G+T ++ + +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRE-----LVHPDALNRFGKTALQVMM---FGSTAIALELL 55
Query: 162 DPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHG 221
++ + + A + + +
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115
Query: 222 QPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
A +TPL LA +++ IL
Sbjct: 116 VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 28.2 bits (61), Expect = 0.60
Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 14/149 (9%)
Query: 78 LIAAIENENIELINILLE---YNIQVKDA-----LLHAIKEEYVEAVEILLEWEEKIHVH 129
L A +++ + LL + + L + A+E+L +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65
Query: 130 GQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEY-N 188
+ + ++N D + A++ + +++ L +
Sbjct: 66 TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
Query: 189 IQVKD-----ALLHAIKEEYVEAVEILLE 212
+ +D L A++ + V+IL
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 31.7 bits (70), Expect = 0.067
Identities = 25/205 (12%), Positives = 63/205 (30%), Gaps = 23/205 (11%)
Query: 75 RSSLIAAIENENIELINILLEY------NIQVKD-----ALLHAIKEEYVEAVEILLEWE 123
+ L A+ N+ ++ L+ + + + L A+ V +L+
Sbjct: 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63
Query: 124 EKI-----HVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENI 178
H +++ + P ++ + ++L A+ E
Sbjct: 64 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123
Query: 179 ELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTP 238
E + +LLE + + + + + AVE ++ +
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-------QMYS 176
Query: 239 DITPLILAAHMNNYEILKILLDRGA 263
+ L A+ +++ L+ GA
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGA 201
Score = 31.0 bits (68), Expect = 0.11
Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 37/234 (15%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQV-- 100
+G+ V ++++ + ++ + L ++ L A+ ++ +L+
Sbjct: 11 VVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 68
Query: 101 -----KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEV 155
+ A A + + LL+ + + + + E ++ ++
Sbjct: 69 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 128
Query: 156 FNINCVDP------LNRSSLIAAIENENIELINILLEYNIQV-------KDALLHAIKEE 202
D RS LI A+EN ++ ++ +LL++ V AL A
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 188
Query: 203 YVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILK 256
+ V L+ + + TPL++A +IL+
Sbjct: 189 LLPLVRTLVRSGADS---------SLKNCH------NDTPLMVARSRRVIDILR 227
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 31.1 bits (69), Expect = 0.12
Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 42/227 (18%)
Query: 39 FLLVAERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNI 98
+A G +++ + K D +R++L A + E++ LL+ +
Sbjct: 7 VCNLAYSGKLEELKESILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61
Query: 99 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNI 158
V ++ + I L + +
Sbjct: 62 PVN--------------------DKDDAGWSPLHIAASAGRDEIVKAL-----LGKGAQV 96
Query: 159 NCVDPLNRSSLIAAIENENIELINILLEY--NIQVKDALLHAIKEEYVEAVEILLEWEEK 216
N V+ + L A E+ +LLE N KD + K
Sbjct: 97 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----------YEATAMHRAAAK 146
Query: 217 IHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDRGA 263
++ ++ T TPL LA E K+L+ +GA
Sbjct: 147 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 193
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 30.0 bits (66), Expect = 0.13
Identities = 13/125 (10%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 104 LLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVDP 163
LL + E + V+ ++ + + ++ + +K +
Sbjct: 5 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64
Query: 164 LNRSSLIAAIENENIELI-NILLEY--NIQVKD--------ALLHAIKEEYVEAVEILLE 212
+ + + + N + L+E + ++E Y + + L
Sbjct: 65 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124
Query: 213 WEEKI 217
+EK+
Sbjct: 125 VQEKM 129
Score = 27.7 bits (60), Expect = 0.83
Identities = 2/29 (6%), Positives = 14/29 (48%)
Query: 241 TPLILAAHMNNYEILKILLDRGATLPMPH 269
L+ ++ +++++ ++ +P+
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPN 31
Score = 25.0 bits (53), Expect = 7.7
Identities = 1/25 (4%), Positives = 4/25 (16%)
Query: 241 TPLILAAHMNNYEILKILLDRGATL 265
+ + L +
Sbjct: 105 ADKCEEMEEGYTQCSQFLYGVQEKM 129
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 29.9 bits (65), Expect = 0.15
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 213 WEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLD 260
+ + A R P+ LA + + ++ + L
Sbjct: 76 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
Score = 26.5 bits (56), Expect = 2.4
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 8/119 (6%)
Query: 102 DALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCV 161
D L A VE V LLE + + + NC
Sbjct: 5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64
Query: 162 DPLNRSSLIAAIENENIELINILLEYNIQVKD--------ALLHAIKEEYVEAVEILLE 212
DP + + E ++L D + A + + + L
Sbjct: 65 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 30.6 bits (67), Expect = 0.16
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
+P L + I + L
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTL 202
Score = 27.5 bits (59), Expect = 1.7
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 66 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEE 111
++N V S + + L + ++ L + EE
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 215
Score = 27.5 bits (59), Expect = 1.7
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 157 NINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEE 202
++N V S + + L + ++ L + EE
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEE 215
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 28.3 bits (61), Expect = 0.49
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 241 TPLILAAHMNNYEILKILLDRGATLPMPH 269
+ A + + +K + +G +
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTL 32
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 28.6 bits (62), Expect = 0.62
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 241 TPLILAAHMNNYEILKILLDRGA 263
PL A N + ++ LL
Sbjct: 2 YPLHQACMENEFFKVQELLHSKP 24
Score = 28.6 bits (62), Expect = 0.70
Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 43/242 (17%)
Query: 43 AERGDCATVRKMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKD 102
+ V+++L + D R L ++ + E+ + LL V
Sbjct: 8 CMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62
Query: 103 ALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKGRTIFMMLDELKDQPEVFNINCVD 162
+ + E + + + + + L
Sbjct: 63 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122
Query: 163 PL-------------NRSSLIAAIENENIELINILLEYN---IQVKD-----ALLHAIKE 201
L N+ L A +++LI +L + +D L HA+ E
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182
Query: 202 EYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILLDR 261
+ +A +L+E +G ++ VD +A + ++ K L+
Sbjct: 183 GHGDAAVLLVEK------YGA--EYDLVDNK------GAKAEDVALN---EQVKKFFLNN 225
Query: 262 GA 263
Sbjct: 226 VV 227
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 28.2 bits (61), Expect = 0.85
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 32/210 (15%)
Query: 66 NINC-VDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAIKEEYVEAVEILLEWEE 124
+N +D +SL A + LL+ + + +
Sbjct: 14 ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 73
Query: 125 KIHVHGQPYVSENKGRTIFMMLDELKDQPEVF---------NINCVDPLNRSSLIAAIEN 175
+ + ++ ++ + E +IN D +++L A
Sbjct: 74 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV 133
Query: 176 ENIELINILLEY-------NIQVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYSWEA 228
N E +NILL + + + + L A +E EA + LL+
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE---------I 184
Query: 229 VDRSSSTFTPDITPLILAAHMNNYEILKIL 258
D D P +A+ +++I+++L
Sbjct: 185 TDHM------DRLPRDVASERLHHDIVRLL 208
Score = 25.5 bits (54), Expect = 5.8
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 14/184 (7%)
Query: 88 ELINILLEYNIQV--------KDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSENKG 139
++I+ LL ++ + +L A + +A + LL+ + +
Sbjct: 3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62
Query: 140 RTIFMMLDELKDQPEVFNINCVDPLNRSSLIAAIENENIELINILLEYNIQVKDALLHAI 199
+ + N ++ + + + ++ DA ++A
Sbjct: 63 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV---EDLITADADINAA 119
Query: 200 KEEYVEAVEILLEWEEKIHVHGQPYSWEAVDRSSSTFTPDITPLILAAHMNNYEILKILL 259
A+ V+ D D TPL LAA +YE K LL
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDA---QDDKDETPLFLAAREGSYEASKALL 176
Query: 260 DRGA 263
D A
Sbjct: 177 DNFA 180
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
(SLT70), superhelical domain {Escherichia coli [TaxId:
562]}
Length = 450
Score = 26.4 bits (57), Expect = 4.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 31 ALTPQEKRFLLV---AERGDCATVRKMLDELKDQP 62
+L Q R+ + + V +M+ LKD P
Sbjct: 2 SLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYP 36
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 356
Score = 26.0 bits (56), Expect = 4.7
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 51 VRKMLDELKDQPEVFNINC-----VDPLNRSSLIAAIENEN 86
V++MLD+ + N+ +DP + + + A+ +
Sbjct: 311 VKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS 351
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus
thermophilus [TaxId: 274]}
Length = 106
Score = 24.3 bits (53), Expect = 8.0
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 99 QVKDALLHAIKEEYVEAVEILLEWEEKIHVHGQPYVSEN 137
+DA I +Y+ VE+ E E+ P S N
Sbjct: 33 TRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTSAN 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.389
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,419
Number of extensions: 50928
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 81
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)