BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11715
         (118 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2
           SV=1
          Length = 293

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156


>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1
           SV=1
          Length = 293

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN 118
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A 
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAR 157


>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101
           PE=1 SV=1
          Length = 293

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVA 156


>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2
           SV=1
          Length = 293

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 72  KEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
           ++ MR+   M +L+ SA TLPLW+GKPG KP  L GA+PA   ++A
Sbjct: 111 RKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVA 156


>sp|Q3TZ89|SC31B_MOUSE Protein transport protein Sec31B OS=Mus musculus GN=Sec31b PE=1 SV=2
          Length = 1158

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 39   HNFCGYHSITKCLLCNQCPFFNNLFTLARITGCKEVMRKSAYMKMLKS 86
            H   G H + +C+  +   F   L   A++ GC      S++M MLK+
Sbjct: 1103 HVLAGLHEVARCV--DAGSFEQGLAVHAQVAGCSSFSEVSSFMPMLKA 1148


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,385,988
Number of Sequences: 539616
Number of extensions: 1516833
Number of successful extensions: 4487
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4480
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)