Query psy11715
Match_columns 118
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 17:06:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 99.2 4.1E-12 1.4E-16 97.2 2.8 33 86-118 14-46 (180)
2 3v46_A Cell division control p 25.3 17 0.0006 27.1 0.4 12 35-46 109-120 (170)
3 2kxh_B Peptide of FAR upstream 18.3 31 0.0011 20.2 0.4 13 59-71 15-27 (31)
4 4b1v_M Phosphatase and actin r 13.7 18 0.0006 21.4 -1.5 19 61-81 9-28 (32)
5 2lbz_A Thuricin17, thurincin H 13.2 62 0.0021 18.8 0.7 11 49-59 6-16 (31)
6 3ha4_A MIX1; TPR-like, helix-t 12.7 76 0.0026 23.9 1.3 14 74-87 96-109 (154)
7 1fjk_A Cardiac phospholamban; 12.4 46 0.0016 21.3 0.1 15 35-52 29-43 (52)
8 1yod_A Water-solublized phosph 11.4 53 0.0018 19.0 0.1 15 35-52 8-22 (30)
9 2jrw_A Cyclic extended PEP.1; 9.9 1.2E+02 0.0043 16.9 1.3 21 88-108 4-25 (26)
10 1uuz_A IVY, inhibitor of verte 9.6 81 0.0028 23.0 0.5 26 77-103 16-42 (137)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=99.21 E-value=4.1e-12 Score=97.20 Aligned_cols=33 Identities=55% Similarity=0.963 Sum_probs=31.3
Q ss_pred hhccccceeccCCCCCCCCcccccCCCCCCccC
Q psy11715 86 SSAHTLPLWVGKPGQKPAALVGAIPADPSHIAN 118 (118)
Q Consensus 86 qsA~TLPLWIGKpgekPPpLCGAIPA~~~YvAK 118 (118)
++|+|||||||||+++|||||||||++++|+++
T Consensus 14 ~~~~~lplw~gk~~~~~p~lcGa~p~~~~~~~~ 46 (180)
T 3mea_A 14 YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVAR 46 (180)
T ss_dssp CSTTCCCBCCCCTTCCCCTTBTTCCCCTTCCCC
T ss_pred hcccccccccCCCCCCCCCccccccCCCCcccC
Confidence 689999999999999999999999999999874
No 2
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=25.27 E-value=17 Score=27.09 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=10.7
Q ss_pred hhhhhhccccch
Q psy11715 35 AELFHNFCGYHS 46 (118)
Q Consensus 35 ~~~~~~~~~~~~ 46 (118)
+|||++.||||-
T Consensus 109 ~elF~~v~Gf~~ 120 (170)
T 3v46_A 109 QELFQRCKGYYF 120 (170)
T ss_dssp HHHHHHSEEEEE
T ss_pred HHHhccceEEEE
Confidence 589999999985
No 3
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=18.34 E-value=31 Score=20.17 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=10.3
Q ss_pred cccchhhhhhccc
Q psy11715 59 FNNLFTLARITGC 71 (118)
Q Consensus 59 ~eErRiaAkiAGp 71 (118)
..-|+|+|||.|+
T Consensus 15 ~RaRQIaAKig~~ 27 (31)
T 2kxh_B 15 QRARQIAAKIGGD 27 (31)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 4568999999884
No 4
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=13.75 E-value=18 Score=21.35 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=11.5
Q ss_pred cchhhhhhccccc-hhhhhHHH
Q psy11715 61 NLFTLARITGCKE-VMRKSAYM 81 (118)
Q Consensus 61 ErRiaAkiAGprk-tMRRGVLM 81 (118)
||.|..|+ +|+ .+|||||-
T Consensus 9 erkis~rq--sreelikrgvlk 28 (32)
T 4b1v_M 9 ERKISMRQ--SREELIKRGVLK 28 (32)
T ss_dssp HHHHHTCC--CHHHHHHTTSCC
T ss_pred HHHHHhcc--cHHHHHHhhhhh
Confidence 45554433 444 89999873
No 5
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=13.20 E-value=62 Score=18.77 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=9.5
Q ss_pred hhhhcCCCccc
Q psy11715 49 KCLLCNQCPFF 59 (118)
Q Consensus 49 ~~~~~~~~sl~ 59 (118)
.|+.|..||+.
T Consensus 6 sclvcaacsve 16 (31)
T 2lbz_A 6 SCLVCAACSVE 16 (31)
T ss_dssp GGGGGGGCCSC
T ss_pred HHHHHHHhHHH
Confidence 69999999975
No 6
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=12.75 E-value=76 Score=23.87 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHhh
Q psy11715 74 VMRKSAYMKMLKSS 87 (118)
Q Consensus 74 tMRRGVLMkmLQqs 87 (118)
.||+-|||++|...
T Consensus 96 ~~rkevlmqllnvk 109 (154)
T 3ha4_A 96 EMRKEVLMQLLNVK 109 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 69999999999754
No 7
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=12.45 E-value=46 Score=21.26 Aligned_cols=15 Identities=53% Similarity=0.782 Sum_probs=11.1
Q ss_pred hhhhhhccccchhhhhhh
Q psy11715 35 AELFHNFCGYHSITKCLL 52 (118)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ 52 (118)
.|||-|||- |--|++
T Consensus 29 qelfvnfcl---ilicll 43 (52)
T 1fjk_A 29 QNLFINFCL---ILIFLL 43 (52)
T ss_dssp HHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHH---HHHHHH
Confidence 589999993 566664
No 8
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=11.36 E-value=53 Score=19.05 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=10.2
Q ss_pred hhhhhhccccchhhhhhh
Q psy11715 35 AELFHNFCGYHSITKCLL 52 (118)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ 52 (118)
.|||-|||= |.-|++
T Consensus 8 Q~LfvNfcL---ilICll 22 (30)
T 1yod_A 8 QNLYINRCL---REICQE 22 (30)
T ss_dssp HHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHH---HHHHHH
Confidence 489999983 455553
No 9
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=9.94 E-value=1.2e+02 Score=16.87 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=11.5
Q ss_pred ccccce-eccCCCCCCCCcccc
Q psy11715 88 AHTLPL-WVGKPGQKPAALVGA 108 (118)
Q Consensus 88 A~TLPL-WIGKpgekPPpLCGA 108 (118)
.+|||. +.+.-.-+|||-|..
T Consensus 4 pmtlpenyfserpyhppppc~~ 25 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPPPPCXX 25 (26)
T ss_dssp CCCCSSSSCCSSSCCSCSCC--
T ss_pred ccccchhhcccCCCCCCCCCCC
Confidence 456664 344445567777753
No 10
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=9.62 E-value=81 Score=23.01 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhccccceeccCC-CCCCC
Q psy11715 77 KSAYMKMLKSSAHTLPLWVGKP-GQKPA 103 (118)
Q Consensus 77 RGVLMkmLQqsA~TLPLWIGKp-gekPP 103 (118)
|-++.+|++.+ ..||.||.+- |...|
T Consensus 16 r~aw~~mvk~~-~~LP~WV~~~~GtssP 42 (137)
T 1uuz_A 16 KATWHAMFKGE-SDVPKWVSDASGPSSP 42 (137)
T ss_dssp HHHHHHHTSSC-CSCCHHHHTTCSCBCC
T ss_pred HHHHHHHHhcc-CCCcHHHHhCCCCCCC
Confidence 45667777766 7999999976 66666
Done!