Query psy11715
Match_columns 118
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 17:06:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ps9a3 c.4.1.1 (A:331-465,A:6 48.3 1.8 0.00013 29.5 0.1 10 47-56 1-11 (179)
2 d1z3xa1 a.118.1.22 (A:1-87) GU 32.5 4.7 0.00035 26.3 0.2 20 78-97 39-62 (87)
3 d1djqa3 c.4.1.1 (A:341-489,A:6 20.3 6.7 0.00049 25.8 -0.9 13 47-59 2-14 (233)
4 d1y6ia1 a.118.1.22 (A:1-82) Mg 16.9 24 0.0017 22.4 1.2 18 78-95 36-54 (82)
5 d1q32a2 d.136.1.3 (A:302-538) 16.2 36 0.0026 24.3 2.2 27 17-43 125-171 (237)
6 d1nekb1 a.1.2.1 (B:107-238) Su 15.8 15 0.0011 23.0 -0.1 26 33-58 83-108 (132)
7 d2dmda3 g.37.1.1 (A:62-90) Zin 13.5 17 0.0012 19.6 -0.2 9 49-57 5-13 (29)
8 d2fug91 d.58.1.5 (9:26-179) NA 13.0 10 0.00076 24.5 -1.4 9 48-56 26-34 (154)
9 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 12.9 19 0.0014 19.2 -0.1 14 49-63 2-15 (28)
10 d2dmda2 g.37.1.1 (A:8-33) Zinc 11.9 27 0.0019 18.4 0.3 11 49-59 3-13 (26)
No 1
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}
Probab=48.28 E-value=1.8 Score=29.55 Aligned_cols=10 Identities=60% Similarity=1.464 Sum_probs=8.7
Q ss_pred hhhhhhcCC-C
Q psy11715 47 ITKCLLCNQ-C 56 (118)
Q Consensus 47 ~~~~~~~~~-~ 56 (118)
|.+|..||| |
T Consensus 1 ir~Ci~C~~~C 11 (179)
T d1ps9a3 1 INTCIGCNQAC 11 (179)
T ss_dssp CCCCCCCCTTT
T ss_pred CccccccHHHH
Confidence 678999998 8
No 2
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.48 E-value=4.7 Score=26.26 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=14.3
Q ss_pred hHHHHHHHhhccc---cceec-cC
Q psy11715 78 SAYMKMLKSSAHT---LPLWV-GK 97 (118)
Q Consensus 78 GVLMkmLQqsA~T---LPLWI-GK 97 (118)
.|||.+||.++.. =+.|| ||
T Consensus 39 ~vL~eFL~~~~~~~~~p~~~V~Gk 62 (87)
T d1z3xa1 39 HLLQEFLKDSATFSPPPAPWIRGQ 62 (87)
T ss_dssp HHHHHHHHHHTTCSSCCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcceehhH
Confidence 5999999987643 33677 54
No 3
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=20.32 E-value=6.7 Score=25.83 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=10.1
Q ss_pred hhhhhhcCCCccc
Q psy11715 47 ITKCLLCNQCPFF 59 (118)
Q Consensus 47 ~~~~~~~~~~sl~ 59 (118)
|-.|..||+|=.+
T Consensus 2 ~r~c~~c~~c~~~ 14 (233)
T d1djqa3 2 IRVCIGCNVCISR 14 (233)
T ss_dssp CCCCCCCCHHHHH
T ss_pred CccchhhHHHHcc
Confidence 6679999999544
No 4
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=16.88 E-value=24 Score=22.44 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=13.5
Q ss_pred hHHHHHHHhhcc-ccceec
Q psy11715 78 SAYMKMLKSSAH-TLPLWV 95 (118)
Q Consensus 78 GVLMkmLQqsA~-TLPLWI 95 (118)
.|||.+|+.++. .-|.||
T Consensus 36 ~vL~eFL~~~~~~~~~t~V 54 (82)
T d1y6ia1 36 GILLDYLAKNVPLEKPVLA 54 (82)
T ss_dssp HHHHHHHHHHCSCSSCCHH
T ss_pred HHHHHHHHHhCccCCCCcc
Confidence 599999998865 355665
No 5
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.22 E-value=36 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=18.1
Q ss_pred cCCC-CCCcccee-------------------eEEeehhhhhhhccc
Q psy11715 17 RSPQ-PHNKSYLK-------------------FFVVGKAELFHNFCG 43 (118)
Q Consensus 17 ~~~~-~~~~~~~~-------------------~~~~~~~~~~~~~~~ 43 (118)
|.-. ||.|.|++ +|+||.|.|=-.-=|
T Consensus 125 R~~a~pHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSANLSkaAWG 171 (237)
T d1q32a2 125 RGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWG 171 (237)
T ss_dssp TTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHC
T ss_pred ccccCCceEEEEEeecCCccccccccccceeeEEEEccccCCHhHhc
Confidence 4444 69999975 688888766544444
No 6
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=15.76 E-value=15 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=19.2
Q ss_pred ehhhhhhhccccchhhhhhhcCCCcc
Q psy11715 33 GKAELFHNFCGYHSITKCLLCNQCPF 58 (118)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~sl 58 (118)
++.+..+..=..|.+..|..|..|+-
T Consensus 83 ~~~~~~~~~~~~~gi~~C~~C~~C~~ 108 (132)
T d1nekb1 83 ETDSRLDGLSDAFSVFRCHSIMNCVS 108 (132)
T ss_dssp CHHHHHHTTCSSSTTTTCCCCCHHHH
T ss_pred ccccchhhhhccchhhhCcCcccccc
Confidence 34556666667788999999998764
No 7
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=17 Score=19.59 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=6.1
Q ss_pred hhhhcCCCc
Q psy11715 49 KCLLCNQCP 57 (118)
Q Consensus 49 ~~~~~~~~s 57 (118)
||.+|..|+
T Consensus 5 kcqlcsy~s 13 (29)
T d2dmda3 5 KCQICPYAS 13 (29)
T ss_dssp ECSSSSCEE
T ss_pred eeeeccccc
Confidence 677776664
No 8
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=13.02 E-value=10 Score=24.49 Aligned_cols=9 Identities=44% Similarity=1.305 Sum_probs=7.0
Q ss_pred hhhhhcCCC
Q psy11715 48 TKCLLCNQC 56 (118)
Q Consensus 48 ~~~~~~~~~ 56 (118)
.||..|+.|
T Consensus 26 ekCI~C~~C 34 (154)
T d2fug91 26 EKCIGCSLC 34 (154)
T ss_dssp BSCCCCTHH
T ss_pred ccCcCCCcH
Confidence 378888877
No 9
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=12.90 E-value=19 Score=19.16 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=9.0
Q ss_pred hhhhcCCCcccccch
Q psy11715 49 KCLLCNQCPFFNNLF 63 (118)
Q Consensus 49 ~~~~~~~~sl~eErR 63 (118)
.|..| -|||+||-+
T Consensus 2 acsec-vcplreeyk 15 (28)
T g2bi6.2 2 ACSEC-VCPLREEYK 15 (28)
T ss_dssp CCSCE-ECCCCCCSS
T ss_pred ccccc-cccchhhhe
Confidence 35555 488888854
No 10
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.90 E-value=27 Score=18.37 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=8.5
Q ss_pred hhhhcCCCccc
Q psy11715 49 KCLLCNQCPFF 59 (118)
Q Consensus 49 ~~~~~~~~sl~ 59 (118)
||..|+.|=-+
T Consensus 3 kc~~c~kcfsr 13 (26)
T d2dmda2 3 KCEVCGKCFSR 13 (26)
T ss_dssp CBTTTTBCCCC
T ss_pred ccchhhhHhcc
Confidence 78899988544
Done!