RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11715
         (118 letters)



>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium,
           SGC, nucleus, transcription, transcription regulation,
           chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo
           sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A
           3mew_A
          Length = 180

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 86  SSAHTLPLWVGKPGQKPAALVGAIPADPSHIA 117
               TLPLW+GKPG KP  L GAIPA   ++A
Sbjct: 14  YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVA 45


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.011
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 9/35 (25%)

Query: 77  KSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPA 111
           K A +K L++S   L L+       PA L  AI A
Sbjct: 19  KQA-LKKLQAS---LKLYA--DDSAPA-L--AIKA 44


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.16
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 13/58 (22%)

Query: 6   YQNETEKSLYSRSPQPHNKSYLKFFVVGKAELFHNFCGYHSITKCLLCNQCPFFNNLF 63
           Y            P P+   Y           F++  G+H +       +   F  +F
Sbjct: 453 YNIPKTFDSDDLIP-PYLDQY-----------FYSHIGHH-LKNIEHPERMTLFRMVF 497


>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
           oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
           simplex}
          Length = 690

 Score = 25.7 bits (57), Expect = 4.2
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query: 47  ITKCLLCNQC 56
           I +C+ CN C
Sbjct: 345 IRECIGCNIC 354


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 5.5
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 37/110 (33%)

Query: 34  KAELFHNFCGY-------------HSITKCLLCN-QCPFF--NNLFTLA---------RI 68
            AEL   F GY               +    L   +  +   N++  LA          +
Sbjct: 57  PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116

Query: 69  TGCKEVMRKSAYMKMLKSSAHTLPLWVGKPGQKPA--ALVGAIPADPSHI 116
              KE+++   Y+      A  +     +P  K +  AL  A+    + +
Sbjct: 117 VKTKELIK--NYIT-----ARIM---AKRPFDKKSNSALFRAVGEGNAQL 156


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,719,042
Number of extensions: 84947
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 6
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)