RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11715
         (118 letters)



>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595
          {Staphylococcus aureus, (strain Mu50 / ATCC 700699)
          [TaxId: 1280]}
          Length = 96

 Score = 23.9 bits (52), Expect = 3.2
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)

Query: 75 MRKSAYMKMLKSSAHTLP--LWVGKPG 99
          M      + L+S AH +     +GK G
Sbjct: 1  MLTGKQKRYLRSLAHNIDPIFQIGKGG 27


>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 344

 Score = 23.5 bits (50), Expect = 9.0
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 35  AELFHNFCGYHSITKCLLCNQCPFFNNL 62
            E F   C   +  K  LC  C   +  
Sbjct: 143 DEFFSQSCAPGADPKSRLCALCAGDDQG 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,393
Number of extensions: 17327
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 7
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)