BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11718
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 13 NGLDGSVAEDCYFAMLAYKQGFSFNFVEGE 42
N +DG++A Y+ +A K+GF + ++GE
Sbjct: 179 NTVDGTLAAAYYYKNMAAKEGFVYIELDGE 208
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 13 NGLDGSVAEDCYFAMLAYKQGFSFNFVEGE 42
N +DG++A Y+ +A K+GF + ++GE
Sbjct: 179 NTVDGTLAAAYYYKNMAAKEGFVYIELDGE 208
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 18 SVAEDCYFAMLAYKQGFSFNFVEGEMWEK-SPFSLWDFVQQRKRWLQG 64
++ ED A+ + +G+ +++ M P + F+QQR RW G
Sbjct: 339 TITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATG 386
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 42 EMWEKSPFSLWDFVQQRK 59
+MW++ P+ +WD+ RK
Sbjct: 573 DMWDQKPYGMWDWDTLRK 590
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 42 EMWEKSPFSLWDFVQQRK 59
+MW++ P+ +WD+ RK
Sbjct: 573 DMWDQKPYGMWDWDTLRK 590
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 42 EMWEKSPFSLWDFVQQRK 59
+MW++ P+ +WD+ RK
Sbjct: 573 DMWDQKPYGMWDWDTLRK 590
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,034,879
Number of Sequences: 62578
Number of extensions: 60868
Number of successful extensions: 118
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)