Query psy11718
Match_columns 65
No_of_seqs 105 out of 1007
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:09:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 99.3 4.8E-12 1.6E-16 94.2 6.0 59 3-64 327-386 (802)
2 2fy7_A Beta-1,4-galactosyltran 98.1 1.4E-06 4.9E-11 58.4 3.1 62 3-64 184-258 (287)
3 1xhb_A Polypeptide N-acetylgal 97.5 0.00017 5.9E-09 49.8 4.9 63 3-65 214-290 (472)
4 2d7i_A Polypeptide N-acetylgal 96.8 0.0054 1.9E-07 43.9 7.3 62 3-64 294-367 (570)
5 2z86_A Chondroitin synthase; G 96.7 0.0026 8.7E-08 45.2 5.0 50 3-52 286-336 (625)
6 2ffu_A Ppgalnact-2, polypeptid 96.5 0.0092 3.2E-07 41.6 6.7 38 3-40 246-283 (501)
7 4fix_A UDP-galactofuranosyl tr 96.4 0.0085 2.9E-07 44.1 6.4 57 4-62 376-439 (657)
8 3bcv_A Putative glycosyltransf 96.4 0.0036 1.2E-07 38.6 3.8 36 5-41 183-219 (240)
9 1qg8_A Protein (spore coat pol 96.0 0.0039 1.3E-07 38.9 2.4 47 17-64 185-235 (255)
10 2z86_A Chondroitin synthase; G 95.2 0.014 4.9E-07 41.4 3.4 57 3-62 531-591 (625)
11 2nxv_A ATP synthase subunits r 95.1 0.046 1.6E-06 34.9 5.3 37 8-44 165-201 (249)
12 3lw6_A FI08434P, beta-4-galact 86.5 0.63 2.2E-05 31.7 3.3 60 4-63 169-244 (287)
13 3l7i_A Teichoic acid biosynthe 79.9 0.36 1.2E-05 35.2 0.0 35 6-42 165-201 (729)
14 3ckj_A Putative uncharacterize 72.5 5.2 0.00018 26.2 4.1 59 2-64 221-291 (329)
15 1du2_A DNA polymerase III; alp 46.0 6.9 0.00024 21.6 0.9 36 25-60 16-57 (76)
16 1se7_A HOT, homologue of the t 39.7 10 0.00035 21.3 0.9 20 42-61 40-59 (83)
17 1nrz_A PTS system, sorbose-spe 27.9 1.1E+02 0.0036 18.7 4.3 35 20-56 124-158 (164)
18 3qy7_A Tyrosine-protein phosph 26.1 1.3E+02 0.0045 19.2 5.5 28 11-39 12-39 (262)
19 1ble_A Fructose permease; phos 23.9 92 0.0032 18.9 3.5 35 20-56 125-159 (163)
20 1vsq_C Mannose-specific phosph 23.6 94 0.0032 18.9 3.5 35 20-56 127-161 (165)
21 3a1q_C Ubiquitin interaction m 22.9 68 0.0023 15.8 2.2 19 14-32 1-19 (45)
22 3fgn_A Dethiobiotin synthetase 22.5 1.1E+02 0.0036 19.6 3.7 23 23-45 45-67 (251)
23 1rrz_A Glycogen synthesis prot 21.0 20 0.00068 20.3 -0.0 22 42-63 52-73 (86)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.27 E-value=4.8e-12 Score=94.19 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=54.5
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEe-cceeeecCCCCHHHHHHHHHhhhcC
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFV-EGEMWEKSPFSLWDFVQQRKRWLQG 64 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~-~~~~~~~~P~~~~~~~~QR~RW~~G 64 (65)
.++++.+||+. .+++||.+++.++.++||++.|+ ++.+++++|.|++++++||.||.+|
T Consensus 327 ~al~~vGgf~~---~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~~p~t~~~~~~Qr~RW~~G 386 (802)
T 4hg6_A 327 RALDEAGGFAG---ETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATG 386 (802)
T ss_dssp HHHHHHTTCCC---SSSSHHHHHHHHHHTTTCCEEECCCCCEEECCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcCC---CCcchHHHHHHHHHHcCCeEEEecCCEEEecCCCCHHHHHHHHHHHHcc
Confidence 45677889998 89999999999999999999998 5779999999999999999999987
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.12 E-value=1.4e-06 Score=58.45 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=45.0
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEecc-------------eeeecCCCCHHHHHHHHHhhhcC
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEG-------------EMWEKSPFSLWDFVQQRKRWLQG 64 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~~-------------~~~~~~P~~~~~~~~QR~RW~~G 64 (65)
..+++.+|||..+.+--.||.||..||.++|+++...+. ...++.|+.++.+.+||+||.++
T Consensus 184 ~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~ 258 (287)
T 2fy7_A 184 QQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSD 258 (287)
T ss_dssp HHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTS
T ss_pred HHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCC
Confidence 456778899984322236999999999999998873311 12457899999999999999874
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=97.45 E-value=0.00017 Score=49.78 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=41.2
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEec-ceeee----cCCCC---------HHHHHHHHHhhhcCC
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVE-GEMWE----KSPFS---------LWDFVQQRKRWLQGY 65 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~-~~~~~----~~P~~---------~~~~~~QR~RW~~G~ 65 (65)
..+++.+|||.+...--.||+||++|+.+.|+++.+++ +.++- ..|.+ .+...+...+|..+|
T Consensus 214 ~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~W~d~~ 290 (472)
T 1xhb_A 214 DYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEF 290 (472)
T ss_dssp HHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC------------CHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEccCcEEEEEccCcCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 35677788998431112799999999999999999984 33321 22221 456667777887764
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=96.76 E-value=0.0054 Score=43.87 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=42.0
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEec-ceeeec----CCC-------CHHHHHHHHHhhhcC
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVE-GEMWEK----SPF-------SLWDFVQQRKRWLQG 64 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~-~~~~~~----~P~-------~~~~~~~QR~RW~~G 64 (65)
..+++.+|||.+....-.||+||++|+.+.|+++.+++ +.++-. .|. ..+...+-..+|...
T Consensus 294 ~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~~~~~~~~~~~~~~n~~r~~~~W~d~ 367 (570)
T 2d7i_A 294 KWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDE 367 (570)
T ss_dssp HHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCCSSCCSCCCSSCCHHHHHHHHHHHHCGG
T ss_pred HHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCeEEEEEccccCCCCCCchhhhHHHHHHHHHHHHHH
Confidence 34667789998542222799999999999999999984 433321 221 145666677788654
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=96.68 E-value=0.0026 Score=45.24 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=35.2
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEec-ceeeecCCCCHH
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVE-GEMWEKSPFSLW 52 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~-~~~~~~~P~~~~ 52 (65)
..+++.+|||.....--.||.+|++++.++|+++.+++ +.++-..|.+-.
T Consensus 286 ~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~ 336 (625)
T 2z86_A 286 KWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGAMAYHQEPPGKE 336 (625)
T ss_dssp HHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGGGCEEEECCC---
T ss_pred HHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcccchhhccCCcccc
Confidence 45677888998331111699999999999999999984 557666666544
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=96.47 E-value=0.0092 Score=41.58 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=29.7
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEec
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVE 40 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~ 40 (65)
..+++.+|||.+....-.||++|++|+...|+++.+++
T Consensus 246 ~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 246 FYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 34667788998431112899999999999999999985
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=96.40 E-value=0.0085 Score=44.09 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=41.4
Q ss_pred hhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEec-ceeeecC----CC--CHHHHHHHHHhhh
Q psy11718 4 SAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVE-GEMWEKS----PF--SLWDFVQQRKRWL 62 (65)
Q Consensus 4 ~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~-~~~~~~~----P~--~~~~~~~QR~RW~ 62 (65)
.+++.+++|.- ..-.||.|+++|+.++||++.+++ +.++-.. +. .++.++..|.|+.
T Consensus 376 v~~~vGgfd~~--F~~~ED~Dl~lR~~~~G~ki~~~p~a~V~H~~~~~~~~~s~~r~Yy~~RN~l~ 439 (657)
T 4fix_A 376 VAEELGQPLPL--FIKWDDADYGLRAAEHGYPTVTLPGAAIWHMAWSDKDDAIDWQAYFHLRNRLV 439 (657)
T ss_dssp HHHHHCSCCSC--SSSSHHHHHHHHHHHTTCCEEEEEEEEEEECCSSSSCCTTSTHHHHHHHHHHH
T ss_pred HHHHhCCChhH--hccCcHHHHHHHHHHcCCeEEEECCEEEEEcCcCccccccHHHHHHHHHHHHH
Confidence 45667778742 344699999999999999999984 4444322 22 3788999998874
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.39 E-value=0.0036 Score=38.64 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=27.3
Q ss_pred hhhhc-cCCCCCCCChhhHHHHHHHHHHCCCeEEEecc
Q psy11718 5 AEKQV-SFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEG 41 (65)
Q Consensus 5 ~e~~~-gw~~g~~~sltED~~l~~~l~~~g~~~~~~~~ 41 (65)
+++.+ ||+.+. ....||.+|.+++..+|+++.|++.
T Consensus 183 ~~~~g~~f~~~~-~~~~eD~~~~~r~~~~g~~i~~~~~ 219 (240)
T 3bcv_A 183 IEKKHLRFVSER-ILPSEDLIFNVDVLANSNIVCVLPQ 219 (240)
T ss_dssp HHHTTCCCCCTT-TCTTHHHHHHHHHHTTCSCEEECC-
T ss_pred HHHcCCccCCCC-CccCCCHHHHHHHHHhCCEEEEECC
Confidence 34445 799832 1467999999999999999999854
No 9
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.97 E-value=0.0039 Score=38.94 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHCCCeEEEecce--eeecCCCCHHHHH--HHHHhhhcC
Q psy11718 17 GSVAEDCYFAMLAYKQGFSFNFVEGE--MWEKSPFSLWDFV--QQRKRWLQG 64 (65)
Q Consensus 17 ~sltED~~l~~~l~~~g~~~~~~~~~--~~~~~P~~~~~~~--~QR~RW~~G 64 (65)
....||.++.+++..+| ++.+++.. .+...|.+..... +||.+|.+.
T Consensus 185 ~~~~eD~~~~~r~~~~g-~~~~~~~~~~~~r~~~~s~s~~~~~~~~~~~~~~ 235 (255)
T 1qg8_A 185 FYRIGDARFFWRVNHFY-PFYPLDEELDLNYITDQSIHFQLFELEKNEFVRN 235 (255)
T ss_dssp GSTTHHHHHHHHHTTTC-CBEEEEEEEEEEEEC--------------CTGGG
T ss_pred cchHHHHHHHHHHHHhC-CEEEecCcEEEEEEcCCccchhHHHHHHHHHHHh
Confidence 46789999999998887 68777433 5666677766654 677777654
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.25 E-value=0.014 Score=41.41 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=37.7
Q ss_pred hhhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEeccee--e--ecCCCCHHHHHHHHHhhh
Q psy11718 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEGEM--W--EKSPFSLWDFVQQRKRWL 62 (65)
Q Consensus 3 ~~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~~~~--~--~~~P~~~~~~~~QR~RW~ 62 (65)
..+++.+|||... ...||++|.+++.+.| ++.+++..+ + .....|.+....|++.+.
T Consensus 531 ~~~~~~ggfd~~~--~~~eD~dl~~r~~~~g-~~~~~~~~~~~~r~h~~~~s~~~~~~~~~~~~ 591 (625)
T 2z86_A 531 RAWNLTEGFNESI--SNAVDYDMYLKLSEVG-PFKHINKICYNRVLHGENTSIKKLDIQKENHF 591 (625)
T ss_dssp HHHTTTTCCCSSC--SSCHHHHHHHHHTTTS-CEEEEEEEEEEEECC----CCSSHHHHHHHHH
T ss_pred HHHHHhCCCCCcc--CChHHHHHHHHHHHhC-CEEEeCCcEEEEEECCCccchhhHHHHHHHHH
Confidence 3456778999843 3679999999999999 888885442 2 234455556666666554
No 11
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=95.13 E-value=0.046 Score=34.86 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=27.2
Q ss_pred hccCCCCCCCChhhHHHHHHHHHHCCCeEEEecceee
Q psy11718 8 QVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEGEMW 44 (65)
Q Consensus 8 ~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~~~~~ 44 (65)
.+|||....+-.-||.|+++|+.++|+++.+++..++
T Consensus 165 ~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~p~~v~ 201 (249)
T 2nxv_A 165 PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLH 201 (249)
T ss_dssp CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEECCCCCE
T ss_pred hCCCCCCCCCcceehhHHHHHHHHcCCeEEEeccEEE
Confidence 4578853223345899999999999999988854443
No 12
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=86.52 E-value=0.63 Score=31.71 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=42.3
Q ss_pred hhhhhccCCCCCCCChhhHHHHHHHHHHCCCeEEEecce------ee----------ecCCCCHHHHHHHHHhhhc
Q psy11718 4 SAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEGE------MW----------EKSPFSLWDFVQQRKRWLQ 63 (65)
Q Consensus 4 ~~e~~~gw~~g~~~sltED~~l~~~l~~~g~~~~~~~~~------~~----------~~~P~~~~~~~~QR~RW~~ 63 (65)
..++..||++.+.+-=.||-|+..|+..+|+++...... .+ ...|..+..+-.+|+||..
T Consensus 169 ~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~ 244 (287)
T 3lw6_A 169 HFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHK 244 (287)
T ss_dssp HHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSS
T ss_pred HHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcccchhhhhhhhcEEccC
Confidence 456778899865455579999999999999988655321 11 1345566677788888854
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=79.92 E-value=0.36 Score=35.24 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhc-cCCCCCCCChhhHHHHHHHHHHCCCeEEEe-cce
Q psy11718 6 EKQV-SFDNGLDGSVAEDCYFAMLAYKQGFSFNFV-EGE 42 (65)
Q Consensus 6 e~~~-gw~~g~~~sltED~~l~~~l~~~g~~~~~~-~~~ 42 (65)
++.+ +|+.+. ...||.++.+++..+|+++.++ +..
T Consensus 165 ~~~gl~fde~~--~~~ED~d~~~rl~~~g~~i~~~~~~~ 201 (729)
T 3l7i_A 165 RAHHIRFNENL--NTYVDWSFVLEYMKYVNKFVRIFNFP 201 (729)
T ss_dssp ---------------------------------------
T ss_pred HHcCCCcCCCC--CcccCHHHHHHHHHhcCCEEEecCcE
Confidence 3444 688832 4799999999999999999888 543
No 14
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=72.50 E-value=5.2 Score=26.16 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=34.9
Q ss_pred hhhhhhhccCCCCCCCChhhHHHHHHHHHH-CCCe-EEEecce--ee--------ecCCCCHHHHHHHHHhhhcC
Q psy11718 2 KVSAEKQVSFDNGLDGSVAEDCYFAMLAYK-QGFS-FNFVEGE--MW--------EKSPFSLWDFVQQRKRWLQG 64 (65)
Q Consensus 2 ~~~~e~~~gw~~g~~~sltED~~l~~~l~~-~g~~-~~~~~~~--~~--------~~~P~~~~~~~~QR~RW~~G 64 (65)
+.++-+.+||+. ...||+++.+++.+ .|++ +..+... .. ..++..+...+-||.+|..+
T Consensus 221 rr~~l~~i~f~~----~~~~D~~l~~r~~~~~g~~~i~~v~~~~r~h~~s~~~~~~~m~~~i~~~~l~r~~~~~~ 291 (329)
T 3ckj_A 221 TRELLTSVPFAP----GYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPLAELGAMSRQVIATLLSRCGIPDS 291 (329)
T ss_dssp EHHHHTTSCBCC----GGGHHHHHHHHHHHHHCGGGEEEEEEEECEECCCCGGGHHHHHHHHHHHHHHHTTCCCC
T ss_pred eHHHHHhCCCCC----CCcccHHHHHHHHHhcCCccEeeecceEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344555667866 34699999999987 5764 5443211 11 12233344555788888543
No 15
>1du2_A DNA polymerase III; alpha helix, transferase; HET: DNA; NMR {Escherichia coli} SCOP: a.237.1.1 PDB: 2ae9_A* 2axd_S* 2xy8_B*
Probab=46.05 E-value=6.9 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=23.0
Q ss_pred HHHHHHHCC--CeEEEecce----eeecCCCCHHHHHHHHHh
Q psy11718 25 FAMLAYKQG--FSFNFVEGE----MWEKSPFSLWDFVQQRKR 60 (65)
Q Consensus 25 l~~~l~~~g--~~~~~~~~~----~~~~~P~~~~~~~~QR~R 60 (65)
+.+.++.+| |+..+-.++ +-.+.|++.++||+||.-
T Consensus 16 i~vDl~AS~vafker~~k~vi~e~ve~~~pe~~R~~F~eRL~ 57 (76)
T 1du2_A 16 VNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLI 57 (76)
T ss_dssp HHHHHHCSSSTTCCSSCCCSCSHHHHHHCCSHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHhhcCCHHHHHHHHHHHH
Confidence 344455544 444443222 555799999999999963
No 16
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=39.70 E-value=10 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.7
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q psy11718 42 EMWEKSPFSLWDFVQQRKRW 61 (65)
Q Consensus 42 ~~~~~~P~~~~~~~~QR~RW 61 (65)
.+-.+.|+..++||+||.-.
T Consensus 40 ~Ve~~~pe~~R~~F~eRL~~ 59 (83)
T 1se7_A 40 QVAREQPENLRTYFMERLRH 59 (83)
T ss_dssp HHHTSCCGGGHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHH
Confidence 36778999999999999643
No 17
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=27.93 E-value=1.1e+02 Score=18.70 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHCCCeEEEecceeeecCCCCHHHHHH
Q psy11718 20 AEDCYFAMLAYKQGFSFNFVEGEMWEKSPFSLWDFVQ 56 (65)
Q Consensus 20 tED~~l~~~l~~~g~~~~~~~~~~~~~~P~~~~~~~~ 56 (65)
-||.+...+|..+|.++.+- .+-+..+.++.++++
T Consensus 124 ~ed~~~lk~L~~~Gv~v~~q--~vP~d~~~~~~~~l~ 158 (164)
T 1nrz_A 124 PQDIQAFRELDKLGVKLDLR--VVASDPSVNILDKIN 158 (164)
T ss_dssp HHHHHHHHHHHHTTCEEEEC--SSTTSCCBCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEE--ECcCCchhhHHHHHh
Confidence 47999999999999998773 233466777777764
No 18
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=26.09 E-value=1.3e+02 Score=19.20 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHCCCeEEEe
Q psy11718 11 FDNGLDGSVAEDCYFAMLAYKQGFSFNFV 39 (65)
Q Consensus 11 w~~g~~~sltED~~l~~~l~~~g~~~~~~ 39 (65)
.|.|+ .++.|-.+++..+.++|++...+
T Consensus 12 ~ddG~-~~~~~sl~~~~~a~~~G~~~i~~ 39 (262)
T 3qy7_A 12 MDDGA-GDSADSIEMARAAVRQGIRTIIA 39 (262)
T ss_dssp SSSSC-SSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCC-CCHHHHHHHHHHHHHCCCCEEEE
Confidence 46665 67888889999999999988766
No 19
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=23.93 E-value=92 Score=18.90 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHCCCeEEEecceeeecCCCCHHHHHH
Q psy11718 20 AEDCYFAMLAYKQGFSFNFVEGEMWEKSPFSLWDFVQ 56 (65)
Q Consensus 20 tED~~l~~~l~~~g~~~~~~~~~~~~~~P~~~~~~~~ 56 (65)
-||.+...+|..+|.++.+- .+-+..+.++.++++
T Consensus 125 ~ed~~~l~~L~~~Gv~v~~q--~vP~d~~~~~~~~lk 159 (163)
T 1ble_A 125 EQDIKAFETLSDKGVKLELR--QLPSDASEDFVQILR 159 (163)
T ss_dssp HHHHHHHHHHHHTTCEEEEC--SSTTSCCEEHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEE--ECCCCchhhHHHHHH
Confidence 47999999999999998773 122355666666654
No 20
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=23.58 E-value=94 Score=18.90 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHCCCeEEEecceeeecCCCCHHHHHH
Q psy11718 20 AEDCYFAMLAYKQGFSFNFVEGEMWEKSPFSLWDFVQ 56 (65)
Q Consensus 20 tED~~l~~~l~~~g~~~~~~~~~~~~~~P~~~~~~~~ 56 (65)
-||.+...+|..+|.++.+- .+-+..+.++.++++
T Consensus 127 ~ed~~~lk~L~~~Gv~v~~q--~vP~d~~~~~~~~lk 161 (165)
T 1vsq_C 127 EKDIEAFKKLNARGIELEVR--KVSTDPKLKMMDLIS 161 (165)
T ss_dssp HHHHHHHHHHHHTTCEEEEC--SSTTSCCEEHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEE--ECCCCchhhHHHHHH
Confidence 47999999999999998773 123355666666654
No 21
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=22.88 E-value=68 Score=15.76 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=13.7
Q ss_pred CCCCChhhHHHHHHHHHHC
Q psy11718 14 GLDGSVAEDCYFAMLAYKQ 32 (65)
Q Consensus 14 g~~~sltED~~l~~~l~~~ 32 (65)
||..+--|-+.|++||..+
T Consensus 1 gp~mtEEEq~ALA~rmSeQ 19 (45)
T 3a1q_C 1 GPLGSEEEQFALALKMSEQ 19 (45)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHhHH
Confidence 5656667778888888653
No 22
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=22.48 E-value=1.1e+02 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEecceeee
Q psy11718 23 CYFAMLAYKQGFSFNFVEGEMWE 45 (65)
Q Consensus 23 ~~l~~~l~~~g~~~~~~~~~~~~ 45 (65)
+-|+..|.++|+++.|+++...+
T Consensus 45 ~gL~~~l~~~G~~V~~fKPv~~g 67 (251)
T 3fgn_A 45 AALASAARQAGIDVAVCKPVQTG 67 (251)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEeeeecC
Confidence 44566677788888888765433
No 23
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=21.02 E-value=20 Score=20.28 Aligned_cols=22 Identities=9% Similarity=0.059 Sum_probs=18.6
Q ss_pred eeeecCCCCHHHHHHHHHhhhc
Q psy11718 42 EMWEKSPFSLWDFVQQRKRWLQ 63 (65)
Q Consensus 42 ~~~~~~P~~~~~~~~QR~RW~~ 63 (65)
.+-.+.|+..++||+||....+
T Consensus 52 ~Ve~e~pee~R~~FreRL~~YR 73 (86)
T 1rrz_A 52 AVTGNMDEEHRTWFCARYAWYC 73 (86)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHH
Confidence 3788999999999999987653
Done!