RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11718
(65 letters)
>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 194
Score = 62.3 bits (152), Expect = 5e-14
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 3 VSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEGE-MWEKSPFSLWDFVQQRKRW 61
SA ++V + + SV+ED FA+ + G+ FV ++EKSP + DF++QR RW
Sbjct: 81 RSALQEVGGFD--ESSVSEDFDFALRLRRAGYRVRFVPESGVYEKSPPTFRDFLRQRLRW 138
Query: 62 LQGY 65
G
Sbjct: 139 AYGI 142
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 42.3 bits (100), Expect = 2e-06
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 17 GSVAEDCYFAMLAYKQGFSFNFVEG-EMWEKSPFSLWDFVQQRKRWLQG 64
+ ED + + G+ +V G ++E SP SL F++QR RW+ G
Sbjct: 181 FLLGEDKELGLRLRRAGWRTAYVPGAAVYELSPSSLAAFIKQRTRWVYG 229
>gnl|CDD|133049 cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose
synthase superfamily. The cellulose synthase (CESA)
superfamily includes a wide variety of
glycosyltransferase family 2 enzymes that share the
common characteristic of catalyzing the elongation of
polysaccharide chains. The members include cellulose
synthase catalytic subunit, chitin synthase, Glucan
Biosynthesis protein and other families of CESA-like
proteins. Cellulose synthase catalyzes the
polymerization reaction of cellulose, an aggregate of
unbranched polymers of beta-1,4-linked glucose residues
in plants, most algae, some bacteria and fungi, and
even some animals. In bacteria, algae and lower
eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of glucan.
Length = 241
Score = 39.9 bits (94), Expect = 1e-05
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 18 SVAEDCYFAMLAYKQGFSFNFVEGEMWEKSPFSLWDFVQQRKRWLQGY 65
+V ED + + G+ + E++ +L ++++QR RW++GY
Sbjct: 183 NVTEDADLGLRLARAGYRTGVLNSTTLEEANNALGNWIRQRSRWIKGY 230
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 37.6 bits (87), Expect = 9e-05
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 18 SVAEDCYFAMLAYKQGFSFNFVEG-EMWEKSPFSLWDFVQQRKRWLQG 64
++ ED + + +G+ +V +W ++P +L + +QR RW +G
Sbjct: 236 TITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARG 283
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the
elongation of the glucan chain of cellulose. Family of
proteins related to Agrobacterium tumefaciens CelA and
Gluconacetobacter xylinus BscA. These proteins are
involved in the elongation of the glucan chain of
cellulose, an aggregate of unbranched polymers of
beta-1,4-linked glucose residues. They are putative
catalytic subunit of cellulose synthase, which is a
glycosyltransferase using UDP-glucose as the substrate.
The catalytic subunit is an integral membrane protein
with 6 transmembrane segments and it is postulated that
the protein is anchored in the membrane at the
N-terminal end.
Length = 234
Score = 28.3 bits (64), Expect = 0.21
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 17 GSVAEDCYFAMLAYKQGFSFNFVEGEM-WEKSPFSLWDFVQQRKRWLQG 64
SV ED ++ + +G+ +V + +P +L +++QR RW +G
Sbjct: 181 DSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARG 229
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit
(UDP-forming). Cellulose synthase catalyzes the
beta-1,4 polymerization of glucose residues in the
formation of cellulose. In bacteria, the substrate is
UDP-glucose. The synthase consists of two subunits (or
domains in the frequent cases where it is encoded as a
single polypeptide), the catalytic domain modelled here
and the regulatory domain (pfam03170). The regulatory
domain binds the allosteric activator cyclic di-GMP. The
protein is membrane-associated and probably assembles
into multimers such that the individual cellulose
strands can self-assemble into multi-strand fibrils.
Length = 713
Score = 27.3 bits (61), Expect = 0.50
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 18 SVAEDCYFAMLAYKQGFSFNFVEGEMWEK-SPFSLWDFVQQRKRWLQG 64
+V ED A+ +++G++ +++ + +P +L + QR RW QG
Sbjct: 329 TVTEDAETALKLHRRGWNSAYLDRPLIAGLAPETLSGHIGQRIRWAQG 376
>gnl|CDD|133034 cd04191, Glucan_BSP_ModH, Glucan_BSP_ModH catalyzes the elongation
of beta-1,2 polyglucose chains of glucan. Periplasmic
Glucan Biosynthesis protein ModH is a
glucosyltransferase that catalyzes the elongation of
beta-1,2 polyglucose chains of glucan, requiring a
beta-glucoside as a primer and UDP-glucose as a
substrate. Glucans are composed of 5 to 10 units of
glucose forming a highly branched structure, where
beta-1,2-linked glucose constitutes a linear backbone to
which branches are attached by beta-1,6 linkages. In
Escherichia coli, glucans are located in the periplasmic
space, functioning as regulator of osmolarity. It is
synthesized at a maximum when cells are grown in a
medium with low osmolarity. It has been shown to span
the cytoplasmic membrane.
Length = 254
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 44 WEKSPFSLWDFVQQRKRWLQG 64
+E+ P +L DF+++ +RW QG
Sbjct: 230 YEECPPTLIDFLKRDRRWCQG 250
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 33 GFSFNFVEGEMWEKSPFSLWDFVQQRKRWL 62
G + + F DFV++RK +L
Sbjct: 430 GVKKKKIHNINEGVTIFDRIDFVKKRKWFL 459
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 24.9 bits (55), Expect = 3.0
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 35 SFNFVEGE 42
SFN+VEGE
Sbjct: 304 SFNYVEGE 311
>gnl|CDD|235476 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 605
Score = 24.8 bits (55), Expect = 3.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 44 WEKSPFSLWDFVQQRKRWLQG 64
+E+ P +L D +++ +RW QG
Sbjct: 355 YEELPPNLLDELKRDRRWCQG 375
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein.
Length = 734
Score = 25.1 bits (55), Expect = 3.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 46 KSPFSLWDFVQQRKRW 61
SP +L D + Q+KRW
Sbjct: 475 DSPINLHDVLNQQKRW 490
>gnl|CDD|225494 COG2943, MdoH, Membrane glycosyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 736
Score = 24.0 bits (52), Expect = 7.0
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 44 WEKSPFSLWDFVQQRKRWLQG 64
+E+ P +L D +++ +RW G
Sbjct: 375 YEELPPNLLDELKRDRRWCHG 395
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 23.8 bits (52), Expect = 8.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 50 SLWDFVQQRKRWLQG 64
S + + QRKRW
Sbjct: 215 SWKELLNQRKRWASK 229
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.439
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,233,201
Number of extensions: 218334
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 14
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)