RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11718
         (65 letters)



>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
           binding protein complex; HET: PLP EPE; 2.53A
           {Archaeoglobus fulgidus} PDB: 4eb7_A*
          Length = 382

 Score = 24.4 bits (54), Expect = 2.7
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 34  FSFNFVEGE 42
             F+++EGE
Sbjct: 294 VRFSYIEGE 302


>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
           synthesis, C-S BE transferase; HET: PLP; 2.00A
           {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
          Length = 384

 Score = 24.4 bits (54), Expect = 2.8
 Identities = 3/9 (33%), Positives = 4/9 (44%)

Query: 34  FSFNFVEGE 42
            SF  + G 
Sbjct: 297 VSFPNIRGS 305


>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
           bacterial structural genomics initiative, BSGI,
           transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
           3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
          Length = 423

 Score = 24.4 bits (54), Expect = 2.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 34  FSFNFVEGE 42
            SFN+VEGE
Sbjct: 322 VSFNYVEGE 330


>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
          hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
          c.31.1.5
          Length = 235

 Score = 24.1 bits (53), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 42 EMWEKSPFSLWDFVQQRKRWLQ 63
          E +++ P  +  F   R+R LQ
Sbjct: 40 EGFDRDPELVQAFYNARRRQLQ 61


>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 23.6 bits (50), Expect = 6.4
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 11  FDNGLDGSVAEDCYFAMLAYKQGFSFNFV 39
           +D GL+    E    +   +  G     +
Sbjct: 302 YDPGLEIWGGEQYEISFKVWMCGGRMEDI 330


>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
          transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
          Length = 115

 Score = 23.1 bits (50), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 45 EKSPFSLW-DFVQQRKRWLQGY 65
           K  FSL    V+QR+  L+ Y
Sbjct: 64 PKKLFSLTPAEVEQRREQLEKY 85


>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
           mutant, muscle contraction; HET: ADP; 1.75A
           {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
           1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
           1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
           1jx2_A* 3mjx_A* 2jhr_A* ...
          Length = 770

 Score = 23.3 bits (51), Expect = 8.1
 Identities = 4/15 (26%), Positives = 10/15 (66%)

Query: 18  SVAEDCYFAMLAYKQ 32
           ++++  Y +ML  +Q
Sbjct: 157 AISDVAYRSMLDDRQ 171


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0853    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,005,280
Number of extensions: 41821
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 9
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)