RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11718
         (65 letters)



>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
           {Lactobacillus helveticus [TaxId: 1587]}
          Length = 134

 Score = 24.5 bits (53), Expect = 0.76
 Identities = 9/45 (20%), Positives = 13/45 (28%)

Query: 1   MKVSAEKQVSFDNGLDGSVAEDCYFAMLAYKQGFSFNFVEGEMWE 45
           M  + E      N    S        M+      +   VEG+  E
Sbjct: 85  MAKAKELGFQITNVPVYSYTTHAVRNMVVKAFDNNLELVEGKEAE 129


>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 238

 Score = 24.3 bits (52), Expect = 1.00
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 22  DCYFAMLAYKQGFSFNFVEGEMWEKSPFSLWDFVQQRKRWLQGY 65
                  A ++ + +     +      F  W     + R++ G+
Sbjct: 94  AEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGF 137


>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA
          {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 21.7 bits (46), Expect = 6.7
 Identities = 5/16 (31%), Positives = 12/16 (75%)

Query: 41 GEMWEKSPFSLWDFVQ 56
           ++++K P S+W F++
Sbjct: 57 NKLYDKIPSSVWKFIR 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 253,211
Number of extensions: 8872
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)