Query psy11719
Match_columns 657
No_of_seqs 163 out of 217
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 17:10:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3163|consensus 100.0 4E-141 8E-146 1014.9 17.1 259 331-590 1-260 (260)
2 PTZ00388 40S ribosomal protein 100.0 1E-118 2E-123 854.5 16.7 222 369-590 1-223 (223)
3 PF01201 Ribosomal_S8e: Riboso 100.0 1.8E-40 3.9E-45 298.6 -3.3 132 331-589 1-132 (132)
4 COG2007 RPS8A Ribosomal protei 100.0 3.9E-38 8.5E-43 283.5 7.6 127 331-590 1-127 (127)
5 TIGR00307 S8e ribosomal protei 99.9 3.1E-25 6.6E-30 200.2 6.6 71 505-590 56-126 (127)
6 PRK04049 30S ribosomal protein 99.9 8.9E-25 1.9E-29 197.3 6.6 71 505-590 56-126 (127)
7 PTZ00148 40S ribosomal protein 99.6 1.2E-15 2.5E-20 147.2 6.3 82 505-590 57-189 (205)
8 KOG3283|consensus 96.6 0.0023 5E-08 62.5 4.6 82 505-590 57-183 (200)
9 KOG3163|consensus 96.3 0.0011 2.3E-08 66.4 0.2 19 591-609 236-254 (260)
10 PTZ00388 40S ribosomal protein 92.1 0.055 1.2E-06 54.2 0.7 20 591-610 199-218 (223)
11 KOG4702|consensus 58.3 27 0.00059 30.9 5.5 40 317-359 13-52 (77)
12 PF06815 RVT_connect: Reverse 54.8 3.3 7.1E-05 37.8 -0.6 64 532-603 4-75 (102)
13 PRK00247 putative inner membra 54.3 39 0.00084 37.1 7.1 10 331-340 277-286 (429)
14 PRK04337 50S ribosomal protein 48.7 13 0.00028 33.3 2.1 51 520-587 20-70 (87)
15 PF04568 IATP: Mitochondrial A 41.1 65 0.0014 29.3 5.4 42 356-402 57-98 (100)
16 PTZ00041 60S ribosomal protein 40.6 49 0.0011 31.3 4.6 88 467-587 8-97 (120)
17 smart00293 PWWP domain with co 38.7 22 0.00049 28.4 1.9 36 563-598 3-51 (63)
18 PF04050 Upf2: Up-frameshift s 38.1 15 0.00034 34.5 1.1 27 428-454 69-97 (170)
19 cd05837 MSH6_like The PWWP dom 32.1 21 0.00045 31.7 0.8 35 562-596 4-53 (110)
20 KOG1573|consensus 31.8 30 0.00066 34.7 2.0 46 484-551 140-188 (204)
21 PF00855 PWWP: PWWP domain; I 31.5 17 0.00036 29.3 0.1 46 563-609 3-57 (86)
22 PF12571 DUF3751: Phage tail-c 29.4 53 0.0011 30.7 3.0 46 519-566 56-101 (159)
23 COG2451 Ribosomal protein L35A 28.8 46 0.00099 30.8 2.4 57 512-587 21-77 (100)
24 KOG4811|consensus 28.0 80 0.0017 30.1 3.9 41 410-451 87-127 (127)
25 cd03454 YdeM YdeM is a Bacillu 27.8 1.1E+02 0.0024 26.5 4.5 42 514-567 89-130 (140)
26 PF05687 DUF822: Plant protein 27.7 62 0.0013 31.7 3.2 33 346-379 4-36 (150)
27 PF15575 Imm29: Immunity prote 27.2 3.7E+02 0.008 24.9 8.1 40 381-420 149-189 (215)
28 KOG0345|consensus 26.8 1.2E+02 0.0025 34.8 5.5 47 316-365 434-486 (567)
29 PF13105 DUF3959: Protein of u 26.8 17 0.00036 37.1 -0.8 30 428-457 157-186 (239)
30 PLN03086 PRLI-interacting fact 23.3 1.6E+02 0.0035 33.6 5.9 41 356-396 9-53 (567)
31 PF07462 MSP1_C: Merozoite sur 23.1 1.5E+02 0.0034 34.0 5.6 64 337-400 62-151 (574)
32 COG3122 Uncharacterized protei 22.0 1.1E+02 0.0025 31.1 4.0 29 347-375 64-93 (215)
33 PF10147 CR6_interact: Growth 21.5 1.2E+02 0.0026 31.0 4.0 14 338-351 162-175 (217)
34 cd06080 MUM1_like Mutated mela 21.3 73 0.0016 27.8 2.2 42 562-607 2-50 (80)
35 COG2007 RPS8A Ribosomal protei 21.0 83 0.0018 30.1 2.6 49 563-612 70-124 (127)
No 1
>KOG3163|consensus
Probab=100.00 E-value=3.8e-141 Score=1014.93 Aligned_cols=259 Identities=78% Similarity=1.197 Sum_probs=257.3
Q ss_pred cCCChhHHHHHHHhcCCCCCHHHHHhhhhhhhhhHhHHHhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHhhccc-cc
Q psy11719 331 MSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQK-HE 409 (657)
Q Consensus 331 MP~QneyIE~h~Kr~GrRlD~eER~RKkeARe~H~~S~~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek~~k~~-~~ 409 (657)
|| ||||||+|||+||||||||||+||||||++|.+|+.||+++|||||||+|+||+|||||||+||||||++++++ .+
T Consensus 1 MP-Qndyie~h~k~~GrRlDheerkrKkeaR~~h~~s~~Akkl~G~KaKl~~kkr~aeKiqmkK~ik~hee~~~k~~~~e 79 (260)
T KOG3163|consen 1 MP-QNDYIERHRKRHGRRLDHEERKRKKEAREAHDRSKMAKKLRGIKAKLFAKKRYAEKIQMKKTIKMHEEKKKKQKNDE 79 (260)
T ss_pred CC-chhHHHHHHHHhccccCHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred CCCCCCCCceeecccccchhhHHhHHHHHHhhhhcccccccCcccccccchhhhheeecCccchhhhcccceeeeeeCCC
Q psy11719 410 KKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGEN 489 (657)
Q Consensus 410 ~~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPlPKVr~isE~EmFKVvkTGKrkkK~WKRmVTK~tFVGe~ 489 (657)
..++||||+||||||++++||+|||||||||+||||||+|||||||+++|+||||||+||||++|+|||||||+||||++
T Consensus 80 ~~~~gavP~yLLDRe~q~~ak~ls~~iKQkRkeKa~K~~VPlPkvr~~~e~E~fkVi~tgK~k~k~WKRmvTk~tFVg~~ 159 (260)
T KOG3163|consen 80 KTPQGAVPAYLLDREQQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQSETEVFKVIRTGKRKKKAWKRMVTKVTFVGDG 159 (260)
T ss_pred CCCCCCcchhhhchhhhhHHHHHHHHHHHHHHhhcccccccCcccccccHHHHHHHHhcCccchhHHHhhhheeeeecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeec
Q psy11719 490 FTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWG 569 (657)
Q Consensus 490 FTRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWg 569 (657)
|||||||||||||||||||++||||||||++||+|||+||||||+||+||++||||||||||||||||||||++||||||
T Consensus 160 FTRkPpKyERfIRPm~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseLGlVt~~GkvvWG 239 (260)
T KOG3163|consen 160 FTRKPPKYERFIRPMGLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSELGLVTQGGKVVWG 239 (260)
T ss_pred cccCCchHhhhhchhhhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEeccccceeccCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEecCCCCccceeeeehh
Q psy11719 570 KYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 570 KYAqVTnrPgqDGcINAVLLv 590 (657)
||||||||||||||||||||+
T Consensus 240 KyAQvTNnPenDGciNAvLLv 260 (260)
T KOG3163|consen 240 KYAQVTNNPENDGCINAVLLV 260 (260)
T ss_pred ehhhccCCccccceeeeEEeC
Confidence 999999999999999999986
No 2
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=100.00 E-value=9.9e-119 Score=854.52 Aligned_cols=222 Identities=74% Similarity=1.166 Sum_probs=219.5
Q ss_pred HhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHhhccc-ccCCCCCCCCceeecccccchhhHHhHHHHHHhhhhcccc
Q psy11719 369 KARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQK-HEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKW 447 (657)
Q Consensus 369 ~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek~~k~~-~~~~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw 447 (657)
+||+|+|||||||||+||+|||||||+|++|||+++|++ +++.++||+|+|||||+++++||+|||+||||||||||||
T Consensus 1 ~a~~l~g~kaKl~~k~r~~eK~~mkk~ik~hee~~~k~~~~~~~~~~a~p~ylldr~~~~~ak~lsn~iKqkrkeka~k~ 80 (223)
T PTZ00388 1 KAQKLRGIKAKLFNKKRYAEKAEMKKTIKAHEEKDVKEKVPEKVPDGAVPSYLLDREQVNRAKVLSNMLKQKRKEKAGKW 80 (223)
T ss_pred CchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhccCCCCcCCCCCCCccceeCCCCcchhHHHHHHHHHHHHhhcccc
Confidence 489999999999999999999999999999999999998 6888999999999999999999999999999999999999
Q ss_pred cccCcccccccchhhhheeecCccchhhhcccceeeeeeCCCCccCCCccccccccccceeeeEEeecCCCCcEEEEeee
Q psy11719 448 EVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPII 527 (657)
Q Consensus 448 ~VPlPKVr~isE~EmFKVvkTGKrkkK~WKRmVTK~tFVGe~FTRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIi 527 (657)
+|||||||+|+|+||||||+||||++|+|||||||+||||||||||||||||||||||||+++|||+||++++||+++|+
T Consensus 81 ~vplpkv~~~~e~E~fkv~~tGk~~~k~WkRmvtk~tfvg~~ftrkppk~erfiRp~glr~~~AnVt~p~~~~t~~~kIi 160 (223)
T PTZ00388 81 DVPIPKVKAMNEDEMFKVVKSGKRKKKSWKRLVNKVTFVGEDFTRKPPKYERFIRPTGLRFKKAHVTHPELKTTFYLDII 160 (223)
T ss_pred ccccccccccCHHHHhHhhhcCCccccchhheeccceecCCCcccCCcccccccccchhhcceeEEeccccCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeeeehh
Q psy11719 528 GVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 528 gVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAVLLv 590 (657)
+|++||+|++|+|+|||||||||||||||||+||++|||||||||||||||||||||||||||
T Consensus 161 ~V~kNPan~~Ytr~nvITKGTIIEtnvselG~vt~~gkvvwgkyAqVTsrPgQDG~VNAVLLv 223 (223)
T PTZ00388 161 GVKKNPQSNLYTSLGVITKGTIIEVNVSELGLVTQTGKVVWGKYAQVTNNPENDGCINAVLLV 223 (223)
T ss_pred EEeeCCCChhhhhcCceeeeeEEEeehhhhccccccCceeeeeeEEEecCCCcCceeeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 3
>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []. One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.
Probab=100.00 E-value=1.8e-40 Score=298.59 Aligned_cols=132 Identities=46% Similarity=0.626 Sum_probs=106.7
Q ss_pred cCCChhHHHHHHHhcCCCCCHHHHHhhhhhhhhhHhHHHhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHhhcccccC
Q psy11719 331 MSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEK 410 (657)
Q Consensus 331 MP~QneyIE~h~Kr~GrRlD~eER~RKkeARe~H~~S~~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek~~k~~~~~ 410 (657)
|| |++|++.|||.+|.|+++++++||+|++.+
T Consensus 1 M~-i~~~~~~krk~tGgr~~~~rkKRK~e~Gr~----------------------------------------------- 32 (132)
T PF01201_consen 1 MG-INQGIRHKRKKTGGRRDPHRKKRKYELGRP----------------------------------------------- 32 (132)
T ss_dssp ---EE--CCCSEETTTEE----S---GGGEE-------------------------------------------------
T ss_pred CC-cchhhhhhhCCCcCcCCHHHHhHHHHhccc-----------------------------------------------
Confidence 89 999999999999999999999999999887
Q ss_pred CCCCCCCceeecccccchhhHHhHHHHHHhhhhcccccccCcccccccchhhhheeecCccchhhhcccceeeeeeCCCC
Q psy11719 411 KEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENF 490 (657)
Q Consensus 411 ~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPlPKVr~isE~EmFKVvkTGKrkkK~WKRmVTK~tFVGe~F 490 (657)
|.|+|| ++++++.||++| ++.|++|.|
T Consensus 33 ----p~~t~l--------g~~~~~~ik~~R-------------------------~rGGn~K~r---------------- 59 (132)
T PF01201_consen 33 ----PANTKL--------GEVLSNRIKQVR-------------------------VRGGNRKIR---------------- 59 (132)
T ss_dssp -------BEE--------SC-C-HEEEEEE-------------------------TSSS-EEEE----------------
T ss_pred ----ccccEE--------ccccceeEEEEE-------------------------ccCCcEeee----------------
Confidence 777887 778889999998 788998877
Q ss_pred ccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeece
Q psy11719 491 TRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGK 570 (657)
Q Consensus 491 TRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgK 570 (657)
+||+++|||+||+++.|++++|++|++||+|++|+|+|+||||||||+|+||||
T Consensus 60 --------------~lr~~~anv~~~~~~~t~k~~I~~V~~Npan~~~vR~~iitKGaII~~d~s~lg------------ 113 (132)
T PF01201_consen 60 --------------ALRLDYANVSWPSEGKTKKVKIISVVYNPANNEYVRRNIITKGAIIETDVSELG------------ 113 (132)
T ss_dssp --------------ECCESEEEEEETTTTEEEEEEEEEECSSSSTHHHHHTTBB-TT-EEEEESHTSS------------
T ss_pred --------------eeeecccEEEecccCceEEeeeEEEEEcCCChhhhhcCceecceEEEEeecccc------------
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEecCCCCccceeeeeh
Q psy11719 571 YAQVTNNPENDGCINAVLL 589 (657)
Q Consensus 571 YAqVTnrPgqDGcINAVLL 589 (657)
||+||||||||||||||||
T Consensus 114 ~A~vtSRPGQdG~vnavLl 132 (132)
T PF01201_consen 114 YARVTSRPGQDGVVNAVLL 132 (132)
T ss_dssp EEEEESEHHHHSCEEEEEE
T ss_pred eEEEEeCCCCcceeeEEEC
Confidence 8999999999999999986
No 4
>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-38 Score=283.49 Aligned_cols=127 Identities=40% Similarity=0.554 Sum_probs=118.2
Q ss_pred cCCChhHHHHHHHhcCCCCCHHHHHhhhhhhhhhHhHHHhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHhhcccccC
Q psy11719 331 MSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEK 410 (657)
Q Consensus 331 MP~QneyIE~h~Kr~GrRlD~eER~RKkeARe~H~~S~~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek~~k~~~~~ 410 (657)
|+ +.+.+.++|.+|. ++|++|+++|
T Consensus 1 M~--~~qg~~~rk~tGg-~~~~~RkKrK---------------------------------------------------- 25 (127)
T COG2007 1 MG--IWQGRSKRKPTGG-KRHQARKKRK---------------------------------------------------- 25 (127)
T ss_pred CC--ccccccccCCccc-chhhhhhhhh----------------------------------------------------
Confidence 55 7888999999999 8888887766
Q ss_pred CCCCCCCceeecccccchhhHHhHHHHHHhhhhcccccccCcccccccchhhhheeecCccchhhhcccceeeeeeCCCC
Q psy11719 411 KEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENF 490 (657)
Q Consensus 411 ~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPlPKVr~isE~EmFKVvkTGKrkkK~WKRmVTK~tFVGe~F 490 (657)
|+|+|| |++..|+| |||+++++|+|.+|
T Consensus 26 --------~elGre---------------------------P~~t~ige-----------------~~~~~~vr~rGgn~ 53 (127)
T COG2007 26 --------FELGRE---------------------------PTETKIGE-----------------KRKRKKVRTRGGNF 53 (127)
T ss_pred --------hhcCCC---------------------------CcccccCc-----------------cceEEEEEeecCCe
Confidence 999999 99999999 89999999999999
Q ss_pred ccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeece
Q psy11719 491 TRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGK 570 (657)
Q Consensus 491 TRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgK 570 (657)
+++ +||.++|||+||+++++++++|++|++||||++|+|+||||||||||++ . |
T Consensus 54 K~r-----------~~~~~~aNV~~p~~g~~~k~~Ii~V~~nPan~~y~rrniitKGaiI~t~---------~-----G- 107 (127)
T COG2007 54 KVR-----------ALRAKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETE---------I-----G- 107 (127)
T ss_pred EEE-----------EEEeccceecccccCcEEEEEEEEEEcCCCChHHhhccceecceEEEEe---------e-----e-
Confidence 998 9999999999999999999999999999999999999999999999955 3 4
Q ss_pred eeeEecCCCCccceeeeehh
Q psy11719 571 YAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 571 YAqVTnrPgqDGcINAVLLv 590 (657)
||+||||||||||||||||+
T Consensus 108 ~A~VTsRPgQdG~vNavLl~ 127 (127)
T COG2007 108 YAVVTSRPGQDGVVNAVLLE 127 (127)
T ss_pred EEEEecCCCccceeEEEEeC
Confidence 79999999999999999984
No 5
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=99.91 E-value=3.1e-25 Score=200.20 Aligned_cols=71 Identities=41% Similarity=0.601 Sum_probs=68.5
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccce
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCI 584 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcI 584 (657)
+||.++|||+||+.+.|++++|++|++||||++|+|+|+|||||||| |+.|+ |+|||||||||||
T Consensus 56 alr~~~~Nv~~~~~~~t~k~kIl~Vv~NpaN~~yvR~niitKGaIIe---------td~g~------A~VTsrPgQdG~v 120 (127)
T TIGR00307 56 LLRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVE---------TDIGY------ARVTSRPGQDGVV 120 (127)
T ss_pred EEEeeeeEEecccCCeEEEEEEEEEEECCCCHHHhhcCcEecceEEE---------EeeeE------EEEecCCCcCceE
Confidence 69999999999999999999999999999999999999999999999 77887 9999999999999
Q ss_pred eeeehh
Q psy11719 585 NAVLLY 590 (657)
Q Consensus 585 NAVLLv 590 (657)
|||||.
T Consensus 121 Navll~ 126 (127)
T TIGR00307 121 NGVLIE 126 (127)
T ss_pred eEEEec
Confidence 999984
No 6
>PRK04049 30S ribosomal protein S8e; Validated
Probab=99.91 E-value=8.9e-25 Score=197.28 Aligned_cols=71 Identities=45% Similarity=0.672 Sum_probs=69.3
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccce
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCI 584 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcI 584 (657)
+||.++|||++|+.+.|++++|++|++||||++|+|+|+|||||||| |+.|+ |+|||||||||||
T Consensus 56 ~lr~~~~Nv~~~~~~~tkk~kI~~Vv~N~aN~~yvRrniitKGaII~---------te~G~------A~VTSRPGQdG~v 120 (127)
T PRK04049 56 LLRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAIIE---------TELGK------AKVTSRPGQDGVV 120 (127)
T ss_pred EEEecceEEeecccCeEEEEEEEEEEECCCCHHHhhcCCEecceEEE---------eccce------EEEecCCCcCceE
Confidence 68999999999999999999999999999999999999999999999 99999 9999999999999
Q ss_pred eeeehh
Q psy11719 585 NAVLLY 590 (657)
Q Consensus 585 NAVLLv 590 (657)
|||||.
T Consensus 121 NavLi~ 126 (127)
T PRK04049 121 NAVLIE 126 (127)
T ss_pred EEEEec
Confidence 999984
No 7
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=99.59 E-value=1.2e-15 Score=147.19 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=70.3
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEec------------cccccccc----------
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNI------------SELGLVTQ---------- 562 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNV------------SELGLVT~---------- 562 (657)
+||.+.+||+.|+.+.|.++.|++|++||||++|+|+|+|||||||++.. .+||.=-.
T Consensus 57 alr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~~~~~~~~~~ 136 (205)
T PTZ00148 57 ALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKYKKEEENKKA 136 (205)
T ss_pred EEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCcccccccccccchhhhhh
Confidence 68999999999999999999999999999999999999999999999652 22222111
Q ss_pred -----------------------------CCceeeceeeeEecCCCCccceeeeehh
Q psy11719 563 -----------------------------AGKVVWGKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 563 -----------------------------~GKVVWgKYAqVTnrPgqDGcINAVLLv 590 (657)
.|+ =||.|||||||+|.+|+.+|+
T Consensus 137 ~k~s~~~~kk~~~r~~~~~~~~~leeqf~~Gr----llA~IsSRPGQ~Gr~dGyILE 189 (205)
T PTZ00148 137 KKKSESLVAKLEVRKKNHKIDKALLEQFQSGR----LLARISSRPGQSGRADGYILE 189 (205)
T ss_pred hhhhHHHHHHHHHhhhhccccHHHHHHHhhCe----EEEEEeCCCCCccceeEEEEe
Confidence 444 279999999999999999987
No 8
>KOG3283|consensus
Probab=96.63 E-value=0.0023 Score=62.46 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=68.8
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccc--------ccc----------------
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISEL--------GLV---------------- 560 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSEL--------GLV---------------- 560 (657)
+||.+.-|..--..++|.+..|+.|.-||+|+..+|-+-+||++|+.|.-.-| |+-
T Consensus 57 ALRlD~Gnfsw~Se~~trktri~dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~~~~~k~sk~ 136 (200)
T KOG3283|consen 57 ALRLDMGNFSWGSEGTTRKTRILDVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNKILNKKKSKH 136 (200)
T ss_pred eeeeccCcccccccceeeeeeeeeeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCccccchhhHH
Confidence 68899999998899999999999999999999999999999999999865433 221
Q ss_pred ---------------------ccCCceeeceeeeEecCCCCccceeeeehh
Q psy11719 561 ---------------------TQAGKVVWGKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 561 ---------------------T~~GKVVWgKYAqVTnrPgqDGcINAVLLv 590 (657)
-+.|+ =||-|+|||||.|.-++-+|.
T Consensus 137 ~~rk~~~r~~~a~vds~l~eqF~~Gr----L~A~isSrpGQ~Gradgyile 183 (200)
T KOG3283|consen 137 VQRKYAERQKNAKVDSSLEEQFAAGR----LYACISSRPGQCGRADGYILE 183 (200)
T ss_pred HHHHHHHhhccccccHHHHHHHhcCc----EEEEEeCCCCcccccceeeec
Confidence 12344 489999999999999988655
No 9
>KOG3163|consensus
Probab=96.31 E-value=0.0011 Score=66.38 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.4
Q ss_pred hhhccceecccCCCCCCCC
Q psy11719 591 VLFGTKFSTFELSENDNVP 609 (657)
Q Consensus 591 i~~gk~~q~~n~~end~~~ 609 (657)
++||||||+|||||||..-
T Consensus 236 vvWGKyAQvTNnPenDGci 254 (260)
T KOG3163|consen 236 VVWGKYAQVTNNPENDGCI 254 (260)
T ss_pred EEeeehhhccCCcccccee
Confidence 8999999999999999753
No 10
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=92.05 E-value=0.055 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.0
Q ss_pred hhhccceecccCCCCCCCCC
Q psy11719 591 VLFGTKFSTFELSENDNVPD 610 (657)
Q Consensus 591 i~~gk~~q~~n~~end~~~~ 610 (657)
++||+|||+||+||||.+-.
T Consensus 199 vvwgkyAqVTsrPgQDG~VN 218 (223)
T PTZ00388 199 VVWGKYAQVTNNPENDGCIN 218 (223)
T ss_pred eeeeeeEEEecCCCcCceee
Confidence 79999999999999997644
No 11
>KOG4702|consensus
Probab=58.29 E-value=27 Score=30.86 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=29.5
Q ss_pred hhHHhHhhHHHhhccCCChhHHHHHHHhcCCCCCHHHHHhhhh
Q psy11719 317 LWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKRE 359 (657)
Q Consensus 317 ~~~~~~~~~l~~~~MP~QneyIE~h~Kr~GrRlD~eER~RKke 359 (657)
+++|--.-+.++++-| ||.|.+...|-|.|-.-|.+..+|
T Consensus 13 ~y~tFPV~~FwlfNQp---e~Fee~v~~~krel~ppe~~~~~E 52 (77)
T KOG4702|consen 13 LYITFPVGAFWLFNQP---EIFEEFVRGYKRELSPPEATKRKE 52 (77)
T ss_pred hhhhhhHHHHHHccCh---HHHHHHHHhccccCCChHHHhhHH
Confidence 4566666778888877 999999988888877665544333
No 12
>PF06815 RVT_connect: Reverse transcriptase connection domain; InterPro: IPR010659 This domain is known as the connection domain. This domain lies between the thumb and palm domains [].; GO: 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 1S9E_B 3QO9_A 1IKY_A 2ZE2_B 3KLF_J 3V6D_B 2YKN_A 1TV6_A 1S9G_B ....
Probab=54.77 E-value=3.3 Score=37.79 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccceEEEEecccccccccCCceee-ceeeeEecCCCCccceeeeehh-------hhhccceecccCC
Q psy11719 532 NPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVW-GKYAQVTNNPENDGCINAVLLY-------VLFGTKFSTFELS 603 (657)
Q Consensus 532 NPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVW-gKYAqVTnrPgqDGcINAVLLv-------i~~gk~~q~~n~~ 603 (657)
+|+-++++..-....|.+.- .|-+.+|+.| ||||+..|-..||=..=|-++. ++|||-- .|..|
T Consensus 4 dp~k~Liaeiqk~g~~qwtY-------qi~Q~~k~LktGk~ak~k~~htN~~~qL~~avqKI~~EsIViwGk~P-kf~lP 75 (102)
T PF06815_consen 4 DPEKELIAEIQKQGQGQWTY-------QIYQPFKNLKTGKYAKIKNAHTNDVKQLAEAVQKIGTESIVIWGKIP-KFRLP 75 (102)
T ss_dssp BTTSSEEEEEEEEETTEEEE-------EEEETTEEEEEEEEESSTSSEESHHHHHHHHHHHHHHHHHHHHSS-E-EEEES
T ss_pred CCCCcEEEEEEEecCCeEEE-------EEEcCCccccccceecccccccccHHHHHHHHHHhccEEEEEEccCc-ccccC
Confidence 56777777666666666554 4567889999 9999999999988433222222 8999854 44444
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=54.29 E-value=39 Score=37.08 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=5.6
Q ss_pred cCCChhHHHH
Q psy11719 331 MSLHNEYIER 340 (657)
Q Consensus 331 MP~QneyIE~ 340 (657)
||+..|+-|-
T Consensus 277 ~P~~~~~~~~ 286 (429)
T PRK00247 277 YPLTDEFKEH 286 (429)
T ss_pred cCCCcchHHH
Confidence 6666665443
No 14
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=48.66 E-value=13 Score=33.33 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=37.5
Q ss_pred cEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 520 ATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 520 ~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
.+--++|+||...-+...|...-+. . |...|+|+||| ||--.||.|+|-|.
T Consensus 20 ~~aLlkiegv~~~~~a~fylGKrv~-----y---------vyk~grviwGK---ItR~HGnsGvVrAk 70 (87)
T PRK04337 20 RQVIIKPLGVDDREEAAKLIGRKVI-----W---------KDPTGNKYVGK---IVRVHGNRGEVRAR 70 (87)
T ss_pred ceEEEEEcCcCCHHHHHhhcCceEE-----E---------EeCCCCEEEEE---EEeeeCCCceEEEE
Confidence 3557999999888777777544332 2 13458999998 67778999999886
No 15
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.11 E-value=65 Score=29.28 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=28.3
Q ss_pred hhhhhhhhhHhHHHhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHH
Q psy11719 356 RKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEK 402 (657)
Q Consensus 356 RKkeARe~H~~S~~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek 402 (657)
|.+...+..-+.+...+|.-||.||-+ |+..-+|.|+.||+.
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~-----e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKE-----EIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 334444555566777788888888866 555567778888764
No 16
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=40.59 E-value=49 Score=31.27 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=54.9
Q ss_pred ecCccchhhhcccceeeeeeCCCCccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccc-
Q psy11719 467 RSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVIT- 545 (657)
Q Consensus 467 kTGKrkkK~WKRmVTK~tFVGe~FTRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVIT- 545 (657)
++.+++++.=-|+-.|..|+| |.| |+|- .|| .+--++|+||...-+...|...-|.-
T Consensus 8 ~~~~~~~~~~~Rly~kgv~lg--YkR------------g~~n-----Q~~---~~aLlKieGV~~~~~a~fYlGKrvayv 65 (120)
T PTZ00041 8 KKKTNRKKKPVRLYVKAVFLG--YKR------------SKVN-----QYP---NVALLKIEGVNTREDARFYLGKRVAYV 65 (120)
T ss_pred eecccCCcCCcceEEEEEEEE--ecc------------cccc-----CCC---ceEEEEecCcCChhhhHhhccceEEEE
Confidence 444555556668888888887 222 2222 222 35579999998877777775444321
Q ss_pred -cceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 546 -KGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 546 -KGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
|+--. .| -.-++|+||| ||--.||.|+|-|.
T Consensus 66 yka~~~-~~-------~~k~RviwGK---VtR~HGnsGvVrAk 97 (120)
T PTZ00041 66 YKAKKL-KN-------GTKFRAIWGK---ITRPHGNSGVVRAR 97 (120)
T ss_pred EcCccc-cC-------CcceeEEEEE---EEcccCCCcEEEEE
Confidence 22100 00 1235899997 77789999999997
No 17
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=38.72 E-value=22 Score=28.40 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCceeecee-------eeEecCCCCccc------eeeeehhhhhcccee
Q psy11719 563 AGKVVWGKY-------AQVTNNPENDGC------INAVLLYVLFGTKFS 598 (657)
Q Consensus 563 ~GKVVWgKY-------AqVTnrPgqDGc------INAVLLvi~~gk~~q 598 (657)
-|.+||||. |+|.+.+.--.. .....+|..||+.-.
T Consensus 3 ~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~ 51 (63)
T smart00293 3 PGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT 51 (63)
T ss_pred CCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE
Confidence 589999998 677777643222 233556688887655
No 18
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=38.09 E-value=15 Score=34.53 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=8.4
Q ss_pred hhhHHhHHHHHHhhh--hcccccccCccc
Q psy11719 428 RAKVLSNMIKQKRKE--KAGKWEVPIPKV 454 (657)
Q Consensus 428 ~AKvLSn~IKQKRkE--KAgKw~VPlPKV 454 (657)
-+|.++..+.+.+.+ |++.++||||-.
T Consensus 69 f~kmm~eS~~srk~e~~k~~~~di~iP~~ 97 (170)
T PF04050_consen 69 FQKMMAESLESRKNESRKKPQFDIPIPMN 97 (170)
T ss_dssp HHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHhhccccccCcccccccCcc
Confidence 356777777777777 888888888854
No 19
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=32.10 E-value=21 Score=31.74 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=24.7
Q ss_pred cCCceeecee-------eeEecCCCCcc--------ceeeeehhhhhccc
Q psy11719 562 QAGKVVWGKY-------AQVTNNPENDG--------CINAVLLYVLFGTK 596 (657)
Q Consensus 562 ~~GKVVWgKY-------AqVTnrPgqDG--------cINAVLLvi~~gk~ 596 (657)
+-|.+||||. |+|.+.|...- ......+|..||..
T Consensus 4 ~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~ 53 (110)
T cd05837 4 QVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDN 53 (110)
T ss_pred CCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCC
Confidence 3599999997 78888776432 23456667888864
No 20
>KOG1573|consensus
Probab=31.79 E-value=30 Score=34.72 Aligned_cols=46 Identities=35% Similarity=0.728 Sum_probs=37.0
Q ss_pred eeeCCCCccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCC--CCCCc-ccccccccceEEE
Q psy11719 484 CFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNP--NSPMY-TNLGVITKGTVIE 551 (657)
Q Consensus 484 tFVGe~FTRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNP--snp~Y-TrlGVITKGTIIE 551 (657)
..||+.| |.|-|+...||.|-+ ....|| +||-| |.+||-+.|+=++
T Consensus 140 AVvGDTf------------pVGC~~~~s~V~~d~----------~F~~NpD~~np~YnT~~GiYqe~CGld 188 (204)
T KOG1573|consen 140 AVVGDTF------------PVGCAFDASNVHHDK----------YFDGNPDINNPKYNTKLGIYQEGCGLD 188 (204)
T ss_pred eeecCcc------------cccccccccceechh----------hccCCCCCCCcccccccccccCCCChh
Confidence 8999998 899999999999843 235677 57888 7788888887555
No 21
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=31.45 E-value=17 Score=29.34 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=27.3
Q ss_pred CCceeecee-------eeEecCCCC--ccceeeeehhhhhccceecccCCCCCCCC
Q psy11719 563 AGKVVWGKY-------AQVTNNPEN--DGCINAVLLYVLFGTKFSTFELSENDNVP 609 (657)
Q Consensus 563 ~GKVVWgKY-------AqVTnrPgq--DGcINAVLLvi~~gk~~q~~n~~end~~~ 609 (657)
-|.+||+|. |+|.+.++. ...-+...+|..||+. +..-.+..+-.|
T Consensus 3 ~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~~wv~~~~i~~ 57 (86)
T PF00855_consen 3 PGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DYAWVKPSNIKP 57 (86)
T ss_dssp TTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EEEEEEGGGEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC-CEEEECHHHhhC
Confidence 589999997 788887642 1223334466788877 443333333333
No 22
>PF12571 DUF3751: Phage tail-collar fibre protein; InterPro: IPR022225 This entry is represented by Bacteriophage HP1, Orf31. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in bacteria and viruses, and is approximately 160 amino acids in length, some annotation suggests that it may be a tail fibre protein. There are two completely conserved residues (K and W) that may be functionally important.
Probab=29.41 E-value=53 Score=30.67 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=30.9
Q ss_pred CcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCce
Q psy11719 519 KATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKV 566 (657)
Q Consensus 519 k~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKV 566 (657)
+...+.+|.++ .|.|++...--++=...+-.-.++|+||+++.|..
T Consensus 56 ~ev~r~~i~~~--~~~n~n~v~~~~~i~~~~ggf~irEiGL~d~~G~L 101 (159)
T PF12571_consen 56 NEVYRAAINSV--DPVNPNQVVYSAVIPSDVGGFTIREIGLFDEDGTL 101 (159)
T ss_pred cEEEEEccCcc--CCCCCCEEEEEEEECCccCCcEEEEEEEEccCCCE
Confidence 45677888888 56666654443333334445678899999999983
No 23
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=28.79 E-value=46 Score=30.76 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=33.1
Q ss_pred EeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 512 HVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 512 nVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
|+-||. +--++|++|..--.-..|.. | -|+-+.-| +|+|+|||-.++ .||.|.|.|-
T Consensus 21 ~~q~P~---~~liKi~gv~s~~eA~~y~g-----k-~v~yk~~~-------~G~Vi~G~V~R~---HGnsGaVrar 77 (100)
T COG2451 21 RTQHPN---VSLIKIEGVDSPEEAQFYLG-----K-RVCYKYRS-------SGRVIKGKVVRT---HGNSGAVRAR 77 (100)
T ss_pred cccCCc---eEEEEEecCCCHHHHHhhhc-----c-EEEEEeCC-------CCcEEEEEEEEe---cCCcceEEEE
Confidence 445553 44677777754333334432 2 33333323 289999986655 6888877775
No 24
>KOG4811|consensus
Probab=28.01 E-value=80 Score=30.14 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=35.7
Q ss_pred CCCCCCCCceeecccccchhhHHhHHHHHHhhhhcccccccC
Q psy11719 410 KKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPI 451 (657)
Q Consensus 410 ~~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPl 451 (657)
....|..||++-.| +..+++.=+..+|.+.+.++-++.|||
T Consensus 87 kdq~G~yPaW~~~~-q~Krl~kK~~~~Kk~~k~~~~~v~~~l 127 (127)
T KOG4811|consen 87 KDQHGQYPAWMNQR-QRKRLKKKREKRKKKKKAKAVKVAKGL 127 (127)
T ss_pred HHhcCCccHHHhhh-HHHHHHHHHHHHHHHHhhhhhhhccCC
Confidence 34789999999999 678888889999999999999998886
No 25
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=27.85 E-value=1.1e+02 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=29.3
Q ss_pred ecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCcee
Q psy11719 514 THPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVV 567 (657)
Q Consensus 514 thPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVV 567 (657)
..|...-+....|+++.+.++++ ..|+++--+.+. .+.|++|
T Consensus 89 v~~Gd~l~~~~~v~~~~~~~~~~---~~~~v~~~~~~~---------nq~g~~v 130 (140)
T cd03454 89 VRPGDTLSVEVEVLDKRPSRSRP---DRGIVTLRSETL---------NQRGEVV 130 (140)
T ss_pred CCCCCEEEEEEEEEEEeecCCCC---CCeEEEEEEEEE---------cCCCCEE
Confidence 45677778888999998766553 567777777766 5677643
No 26
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=27.68 E-value=62 Score=31.66 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=27.0
Q ss_pred CCCCCHHHHHhhhhhhhhhHhHHHhhhhhhhhhh
Q psy11719 346 GRRLDYEERKRKREAREPHKRAEKARSVRKIKAK 379 (657)
Q Consensus 346 GrRlD~eER~RKkeARe~H~~S~~AqklrGlKAK 379 (657)
||+--..||.+-|. ||-|+|+--|+-+.|||+-
T Consensus 4 ~r~pt~kErEnnk~-RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 4 GRRPTWKERENNKR-RERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred cccccHhhhHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 55666778888777 9999999999999999873
No 27
>PF15575 Imm29: Immunity protein 29
Probab=27.20 E-value=3.7e+02 Score=24.95 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=23.6
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHhhcccccC-CCCCCCCcee
Q psy11719 381 YNKQRRNEKIQMKKKIKAHEEKLTKQKHEK-KEEGALPVYL 420 (657)
Q Consensus 381 ~~kkR~~EKiqMKK~Ik~hEek~~k~~~~~-~~~gavPaYL 420 (657)
..+.+.+=+-.|.+.+..|.+.-....... .++|-++-.+
T Consensus 149 ~~~D~~~f~~aL~~aL~~h~~~~~~~~~~~~~~~~~~~~~~ 189 (215)
T PF15575_consen 149 ARGDEEAFEEALEEALEPHKAYWTADDEREGDPEGFLSLPL 189 (215)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHhcccccccCccccccHHH
Confidence 333333334558888899988876554222 5667665544
No 28
>KOG0345|consensus
Probab=26.84 E-value=1.2e+02 Score=34.79 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=29.2
Q ss_pred hhhHHhHhhHHHhhccCCChhHHHHHHHhcCCC------CCHHHHHhhhhhhhhhH
Q psy11719 316 TLWLTTMCDALWLTAMSLHNEYIERHRKLYGRR------LDYEERKRKREAREPHK 365 (657)
Q Consensus 316 ~~~~~~~~~~l~~~~MP~QneyIE~h~Kr~GrR------lD~eER~RKkeARe~H~ 365 (657)
.|=+..++-+.++...| --=|+-+-+.|.- .|++|.+-|...||..+
T Consensus 434 dLd~~~lA~~YgLl~lP---~M~Elk~~~~~~~~~~~~~id~~~ikykdkkrEk~R 486 (567)
T KOG0345|consen 434 DLDLGKLATLYGLLRLP---KMPELKQYKIGEFFFPKPAIDFSEIKYKDKKREKQR 486 (567)
T ss_pred CCcHHHHHHHHHHHhCC---CcHHHhhhhccceeccCCCcchhhhcccchHHHHHH
Confidence 45577788888887755 1115555454443 67888877777666544
No 29
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=26.78 E-value=17 Score=37.11 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=23.5
Q ss_pred hhhHHhHHHHHHhhhhcccccccCcccccc
Q psy11719 428 RAKVLSNMIKQKRKEKAGKWEVPIPKVRTQ 457 (657)
Q Consensus 428 ~AKvLSn~IKQKRkEKAgKw~VPlPKVr~i 457 (657)
.-|.=.|..|||.|.|.-.|.+|||..--.
T Consensus 157 ~~kEn~nlf~qKKKR~~~sfkir~PrLPk~ 186 (239)
T PF13105_consen 157 NNKENINLFKQKKKRKRLSFKIRIPRLPKL 186 (239)
T ss_pred cchhhhHHHhhHhhccCCceeecCCCcchh
Confidence 333445889999999999999999876543
No 30
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.32 E-value=1.6e+02 Score=33.63 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred hhhhhhhhhHhHHHhhhhhh--hhhhhhhHhhh--HHHHHHHHHH
Q psy11719 356 RKREAREPHKRAEKARSVRK--IKAKLYNKQRR--NEKIQMKKKI 396 (657)
Q Consensus 356 RKkeARe~H~~S~~AqklrG--lKAKL~~kkR~--~EKiqMKK~I 396 (657)
|.|.+||-.+|.++|+.-.+ -|||--+.+|+ -|++|+.+.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRL 53 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433 23333333332 2456666666
No 31
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.09 E-value=1.5e+02 Score=34.00 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCHHHHHhhhhhhhhhHhH------HHhhhhhhhhhhh--------------------hhHhhhHHHH
Q psy11719 337 YIERHRKLYGRRLDYEERKRKREAREPHKRA------EKARSVRKIKAKL--------------------YNKQRRNEKI 390 (657)
Q Consensus 337 yIE~h~Kr~GrRlD~eER~RKkeARe~H~~S------~~AqklrGlKAKL--------------------~~kkR~~EKi 390 (657)
=||...|.--..|||..+-.=|-.|=-|++. .+.++|.-+|+|| |||||-+||.
T Consensus 62 eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~vl~n~~vfFnKkrEaek~ 141 (574)
T PF07462_consen 62 EIEELKKKIQVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNKLERRQNLLNNPTSVLKNFTVFFNKKREAEKK 141 (574)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhhhhHHHHH
Confidence 3777777777778887666555555444432 4567788888886 7899999999
Q ss_pred HHHHHHHHHH
Q psy11719 391 QMKKKIKAHE 400 (657)
Q Consensus 391 qMKK~Ik~hE 400 (657)
+.--++|..|
T Consensus 142 eveNtlkNt~ 151 (574)
T PF07462_consen 142 EVENTLKNTE 151 (574)
T ss_pred HHHHHhhhHH
Confidence 9888887655
No 32
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.04 E-value=1.1e+02 Score=31.14 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=20.7
Q ss_pred CCCCHHHHHhhhhh-hhhhHhHHHhhhhhh
Q psy11719 347 RRLDYEERKRKREA-REPHKRAEKARSVRK 375 (657)
Q Consensus 347 rRlD~eER~RKkeA-Re~H~~S~~AqklrG 375 (657)
+|+-+.+|.-+++| |+..++.+.+|--+.
T Consensus 64 qrl~~k~~vd~~eayr~aae~~Kaeqlerd 93 (215)
T COG3122 64 QRLAKKSRVDAREAYRIAAEENKAEQLERD 93 (215)
T ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888 777777776665443
No 33
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=21.49 E-value=1.2e+02 Score=30.96 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=10.6
Q ss_pred HHHHHHhcCCCCCH
Q psy11719 338 IERHRKLYGRRLDY 351 (657)
Q Consensus 338 IE~h~Kr~GrRlD~ 351 (657)
||.-|.+||+.+|.
T Consensus 162 ~eEvre~fGy~vDp 175 (217)
T PF10147_consen 162 IEEVREHFGYKVDP 175 (217)
T ss_pred HHHHHHHhCCcCCC
Confidence 56677788888875
No 34
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.30 E-value=73 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=25.6
Q ss_pred cCCceeecee-------eeEecCCCCccceeeeehhhhhccceecccCCCCCC
Q psy11719 562 QAGKVVWGKY-------AQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDN 607 (657)
Q Consensus 562 ~~GKVVWgKY-------AqVTnrPgqDGcINAVLLvi~~gk~~q~~n~~end~ 607 (657)
+.|.+||||+ |+|.+-+.. +--..|..||..-+.......+.
T Consensus 2 ~~gdlVWaK~~g~P~WPa~I~~~~~~----~~k~~V~FfG~~~~~a~~~~~~l 50 (80)
T cd06080 2 EKNDLVWAKIQGYPWWPAVIKSISRK----KQKARVNFIGDNMQSEKKGIRVV 50 (80)
T ss_pred CCCCEEEEeCCCCCCCCEEEeeecCC----CCEEEEEEeCCCCceeccchhhc
Confidence 3689999995 677765543 33455578888744443333333
No 35
>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=83 Score=30.12 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=33.3
Q ss_pred CCceeeceeeeEecCCCCc-----cceeee-ehhhhhccceecccCCCCCCCCCch
Q psy11719 563 AGKVVWGKYAQVTNNPEND-----GCINAV-LLYVLFGTKFSTFELSENDNVPDDT 612 (657)
Q Consensus 563 ~GKVVWgKYAqVTnrPgqD-----GcINAV-LLvi~~gk~~q~~n~~end~~~~~~ 612 (657)
.|+++=.|..+|..||.|- |.|+-= .|.+=-| ||++|+.|+.|.+-+..
T Consensus 70 ~g~~~k~~Ii~V~~nPan~~y~rrniitKGaiI~t~~G-~A~VTsRPgQdG~vNav 124 (127)
T COG2007 70 TGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETEIG-YAVVTSRPGQDGVVNAV 124 (127)
T ss_pred cCcEEEEEEEEEEcCCCChHHhhccceecceEEEEeee-EEEEecCCCccceeEEE
Confidence 6777777777788888765 444321 1222238 99999999999876543
Done!