Query psy11719
Match_columns 657
No_of_seqs 163 out of 217
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 17:11:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kcp_A 30S ribosomal protein S 99.9 4.2E-27 1.4E-31 203.8 6.6 71 505-590 19-89 (98)
2 2kco_A 30S ribosomal protein S 99.9 5E-27 1.7E-31 211.9 4.8 80 496-590 41-127 (133)
3 3j20_J 30S ribosomal protein S 99.9 2E-26 6.8E-31 206.3 2.1 70 505-590 57-126 (127)
4 3u5c_I RP19, S14, YS9, 40S rib 99.4 2E-14 6.9E-19 137.0 2.0 82 505-590 57-185 (200)
5 2xzm_2 40S ribosomal protein S 99.3 5.7E-13 2E-17 127.6 2.0 82 505-590 65-192 (208)
6 3j21_c 50S ribosomal protein L 62.3 3.3 0.00011 35.6 1.9 50 521-587 21-70 (87)
7 2bsc_A F17A-G adhesin; bacteri 38.7 13 0.00045 35.4 2.0 73 494-581 29-101 (177)
8 1sqr_A 50S ribosomal protein L 32.1 19 0.00064 31.5 1.8 50 521-587 21-70 (95)
9 2rem_A Disulfide oxidoreductas 25.3 1.5E+02 0.005 24.9 6.2 33 414-446 154-193 (193)
10 2krs_A Probable enterotoxin; a 17.1 82 0.0028 24.5 2.7 53 522-588 5-58 (74)
No 1
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=99.93 E-value=4.2e-27 Score=203.76 Aligned_cols=71 Identities=32% Similarity=0.493 Sum_probs=68.7
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccce
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCI 584 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcI 584 (657)
+||+++|||+||+++.|++++|++|++||||++|+|+|+|||||||| |+.|+ |+|||||||||||
T Consensus 19 alr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~---------~d~Gk------A~VTSRPGQdG~v 83 (98)
T 2kcp_A 19 LASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVE---------TNLGN------VRVTSRPGQDGVI 83 (98)
T ss_dssp TTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEE---------ESSSE------EEECSCTTGGGSC
T ss_pred EEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEE---------ecCcE------EEEecCCCCccEE
Confidence 69999999999999999999999999999999999999999999999 66898 9999999999999
Q ss_pred eeeehh
Q psy11719 585 NAVLLY 590 (657)
Q Consensus 585 NAVLLv 590 (657)
|||||+
T Consensus 84 navlL~ 89 (98)
T 2kcp_A 84 NGVLIR 89 (98)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999875
No 2
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=99.93 E-value=5e-27 Score=211.86 Aligned_cols=80 Identities=30% Similarity=0.418 Sum_probs=73.1
Q ss_pred cccccccccc-------ceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceee
Q psy11719 496 KFERFIRPMA-------LRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVW 568 (657)
Q Consensus 496 KyERFIRPmg-------LR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVW 568 (657)
+-.+++|.+| ||+++|||+||++++|++++|++|++||||++|+|+|+||||||||+| .|
T Consensus 41 ~~~~~vR~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~~Vv~Npsn~~yvR~n~itKGaII~~~---------lG---- 107 (133)
T 2kco_A 41 DIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTE---------AG---- 107 (133)
T ss_dssp HHHHHHHTCCCCCCCCCCCCCEEEEEETTTTEEEEEEEEEECSCCTTHHHHTTTCCCTTCEEEES---------SS----
T ss_pred eEEEEEeccCCceeeeEeeeeeEEEEecccCeEEEEEEEEEEECCCChhheecccEeeeeEEEEe---------Cc----
Confidence 4456677776 999999999999999999999999999999999999999999999955 55
Q ss_pred ceeeeEecCCCCccceeeeehh
Q psy11719 569 GKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 569 gKYAqVTnrPgqDGcINAVLLv 590 (657)
||+||||||||||||||||+
T Consensus 108 --~A~VtSRPGQdG~vnavlle 127 (133)
T 2kco_A 108 --LAVVTSRPGQDGVINAVLLK 127 (133)
T ss_dssp --EEEEEEEECTTSBEEEEECS
T ss_pred --eEEEecCCCCcceEEEEEEe
Confidence 69999999999999999875
No 3
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=2e-26 Score=206.29 Aligned_cols=70 Identities=37% Similarity=0.499 Sum_probs=67.6
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccce
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCI 584 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcI 584 (657)
+||+++|||+| +++.|++++|++|++||||++|+|+|+|||||||| |+.|+ |||||||||||||
T Consensus 57 alr~~~aNvs~-s~~~t~k~~Ii~Vv~NpsN~~yvR~n~itKGaIIe---------te~G~------a~vtsrPgqdG~v 120 (127)
T 3j20_J 57 LTAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIE---------TEIGK------AKVTSRPGQDGVV 120 (127)
T ss_dssp EEEESBCCCCC-SSCCCCCCBBCCCCCCSSCSHHHHHTCCCSSCEEE---------BSSSE------EEECSCSSSSCCC
T ss_pred EEEeccceEEe-ecCCEEEEEEEEEEECCCChhheEeccEecceEEE---------EcCce------EEEecCCccCceE
Confidence 59999999999 99999999999999999999999999999999999 78888 9999999999999
Q ss_pred eeeehh
Q psy11719 585 NAVLLY 590 (657)
Q Consensus 585 NAVLLv 590 (657)
|||||.
T Consensus 121 Navll~ 126 (127)
T 3j20_J 121 NAILLE 126 (127)
T ss_dssp CEEECC
T ss_pred EEEEec
Confidence 999984
No 4
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=99.43 E-value=2e-14 Score=136.97 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=71.6
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecc------------ccccc------------
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNIS------------ELGLV------------ 560 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVS------------ELGLV------------ 560 (657)
+||.+.|||++|+.+.|.+++|++|++||||++|+|+|+|||||||+++.+ +||-=
T Consensus 57 alr~d~~N~s~~se~~tkK~kI~~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~~~~~~~k~s 136 (200)
T 3u5c_I 57 ALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVAKS 136 (200)
T ss_dssp ESSBCEEEEEEGGGTEEEEEECCEEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC-----------C
T ss_pred eEeeceeEEEeCCCCeEEEEeEEEEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCcccccccccchhhhhhhh
Confidence 689999999999999999999999999999999999999999999999887 45410
Q ss_pred -----------------------ccCCceeeceeeeEecCCCCccceeeeehh
Q psy11719 561 -----------------------TQAGKVVWGKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 561 -----------------------T~~GKVVWgKYAqVTnrPgqDGcINAVLLv 590 (657)
-+.|+ =||.|+|||||.|...+-+|+
T Consensus 137 ~~~~~k~~~r~~~~~i~~~leeqf~~Gr----llA~isSRPGQ~GradGyiLE 185 (200)
T 3u5c_I 137 KNAERKWAARAASAKIESSVESQFSAGR----LYACISSRPGQSGRCDGYILE 185 (200)
T ss_dssp SHHHHHHHHSCSSCCCCHHHHHHHHTTC----CEEEECSCHHHHSCCCEEECC
T ss_pred HHHHHHHHHHHhhCCcCHHHHHHHhhCc----EEEEEecCCCCccccceeEEc
Confidence 01233 389999999999999999877
No 5
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=99.28 E-value=5.7e-13 Score=127.65 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=70.9
Q ss_pred cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccc------------cc-------------
Q psy11719 505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISEL------------GL------------- 559 (657)
Q Consensus 505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSEL------------GL------------- 559 (657)
+||.+.+||+.|+.+.|.+++|++|++||+|++|+|+|+|||||||+++..-| |-
T Consensus 65 alrl~~gNfsw~se~~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~~~~~~~k~s 144 (208)
T 2xzm_2 65 ALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDRTVLGNKEKS 144 (208)
T ss_dssp EEEESEEEEEETTTTEEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGCBCCCSCCSS
T ss_pred eeecceeEEEecCCCeEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCcccccccccccccchhhh
Confidence 68999999999999999999999999999999999999999999999987643 21
Q ss_pred -------------------cc--cCCceeeceeeeEecCCCCccceeeeehh
Q psy11719 560 -------------------VT--QAGKVVWGKYAQVTNNPENDGCINAVLLY 590 (657)
Q Consensus 560 -------------------VT--~~GKVVWgKYAqVTnrPgqDGcINAVLLv 590 (657)
.. +.|+ =||.|+|||||.|..++-+|+
T Consensus 145 ~~~~kk~~r~~~~~~~~~l~eqf~~Gr----llA~isSRPGQ~GradGyiLE 192 (208)
T 2xzm_2 145 RHVQKRVKRTKAQALEKNIEEQFVSQR----ILACITSRPGQSGRADGYILE 192 (208)
T ss_dssp TTHHHHHHHTTTCCCCHHHHHHHHHSE----EEEEECSCHHHHSCCEEEECC
T ss_pred HHHHHHHHHhhhccccHHHHHHHhhCc----EEEEEecCCCCcccccEEEEe
Confidence 00 1233 389999999999999998776
No 6
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=62.25 E-value=3.3 Score=35.64 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=35.2
Q ss_pred EEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 521 TFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 521 T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
|--++|+||..--.-.-|.-.-+. - |+..|+|+||| ||--.||.|+|-|.
T Consensus 21 taLlkieGV~~~~~a~fylGKrva-----y---------v~~~g~~iwGK---Vtr~HGnsGvVrAk 70 (87)
T 3j21_c 21 VMIIKPLDVNSREEASKLIGRLVL-----W---------KSPSGKILKGK---IVRVHGTKGAVRAR 70 (87)
T ss_dssp CEEEEESSCCSHHHHGGGTTCEEE-----E---------CCSSSCCEEEE---EEEECCSSSCEEEE
T ss_pred eEEEEEcCcCCHHHHHhhcCceEE-----E---------EeCCCCEEEEE---EEeeeCCCCeEEEE
Confidence 457888888655544555433222 2 57799999998 66778999999886
No 7
>2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 3f64_A* 3f6j_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 3ffo_A* 2bs8_A* 2bs7_1*
Probab=38.72 E-value=13 Score=35.41 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=55.6
Q ss_pred CCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeee
Q psy11719 494 PPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQ 573 (657)
Q Consensus 494 PPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAq 573 (657)
|=+|.+| |.++...+|+.| .+.-||..|.+-.+=| --|-+--+||-.+ -.++|++-..|. +||.+
T Consensus 29 Pf~Fdn~---n~~~~qd~nKw~--~G~gfC~~LeAksdLp------v~gtln~~sIY~l-tdyiGili~~GD---t~ys~ 93 (177)
T 2bsc_A 29 PFVYDTR---NKIGYQNANVWH--ISKGFCVGLDGKVDLP------VVGSLDGQSIYGL-TEEVGLLIWMGD---TKYSR 93 (177)
T ss_dssp CEEC-CT---TSSEEEEEEEEE--EETTCEEEEEEEECSC------EEEEETTEEEEES-SSSEEEEEEEES---SSGGG
T ss_pred Ceeecch---hhhhcccCceeE--cCCCcEEEEEeeccCc------eEEEeCCceEEec-cceEEEEEEecC---ccccC
Confidence 6678888 999999999998 4444577777654433 4567778888887 678888888888 77988
Q ss_pred EecCCCCc
Q psy11719 574 VTNNPEND 581 (657)
Q Consensus 574 VTnrPgqD 581 (657)
=+|-|+|.
T Consensus 94 ~~~v~~ns 101 (177)
T 2bsc_A 94 GTAMSGNS 101 (177)
T ss_dssp CEECCSSS
T ss_pred CccCCCCc
Confidence 88888875
No 8
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=32.06 E-value=19 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 521 TFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 521 T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
|--++|+||..--+...|.. |-.+ .|...|+|+||| ||--.||.|+|-|.
T Consensus 21 ~aLlkIegV~~k~~a~fYlG-----Krva---------yvyka~rviwGK---VtR~HGnsGvVrAk 70 (95)
T 1sqr_A 21 VMIIKPLDVNSREEASKLIG-----RLVL---------WKSPSGKILKGK---IVRVHGTKGAVRAR 70 (95)
T ss_dssp EEEEEESCCCCHHHHHHHTT-----CEEE---------ECCSTTCCEEEE---EEEESSSSSCEEEE
T ss_pred eEEEEEcCCCCHHHHHhhcC-----CeEE---------EEECCCCEEEEE---EEeeeCCCCEEEEE
Confidence 45677777754433333322 2222 346677999998 66778999999986
No 9
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=25.35 E-value=1.5e+02 Score=24.94 Aligned_cols=33 Identities=9% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCCceeeccccc-------chhhHHhHHHHHHhhhhccc
Q psy11719 414 GALPVYLLDRDVQ-------SRAKVLSNMIKQKRKEKAGK 446 (657)
Q Consensus 414 gavPaYLLDRe~~-------~~AKvLSn~IKQKRkEKAgK 446 (657)
..+|+++++.... .-.++|...+++.|+|++|.
T Consensus 154 ~gtPt~ving~~~~~g~~~~~l~~~i~~~~~~~~~~~~~~ 193 (193)
T 2rem_A 154 VGTPTIVVNGRYMVTGHDFEDTLRITDYLVSRERAASHGR 193 (193)
T ss_dssp SSSSEEEETTTEEECCSSHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCeEEECCEEEecCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 3789998875432 22456777778889998874
No 10
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=17.10 E-value=82 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=37.0
Q ss_pred EEEe-eeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeeee
Q psy11719 522 FYLP-IIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 588 (657)
Q Consensus 522 ~~lp-IigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAVL 588 (657)
+..+ -+.|.+-|+ ..|.-.+.+.+|+.++|-= +. |.+.+|..+ |..|-|.+-.
T Consensus 5 V~~~~~lnvRs~P~-~~~~vi~~l~~G~~v~v~~-------~~-----~~W~kV~~~-g~~GwV~~~y 58 (74)
T 2krs_A 5 VKVNSALNMRSGPG-SNYGVIGTLRNNDKVEIIK-------EV-----DGWYEIRFN-GKVGYASKSY 58 (74)
T ss_dssp ECCSSEEEEESSSS-TTTCEEEEEETTCEEEEEE-------EE-----TTEEEEEET-TEEEEECSSS
T ss_pred EECCCCEEEEcCCC-CCChHHEEECCCCEEEEEE-------Ee-----CCEEEEEEC-CeEEEEEhHH
Confidence 3444 567888885 5688999999999998521 12 336777765 8888776543
Done!