Query psy11719
Match_columns 657
No_of_seqs 163 out of 217
Neff 1.9
Searched_HMMs 13730
Date Fri Aug 16 17:11:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2daqa1 b.34.9.2 (A:8-104) His 69.5 1.2 8.8E-05 34.4 2.6 35 562-596 3-50 (97)
2 d1sqra_ b.43.3.3 (A:) Ribosoma 58.9 1.8 0.00013 35.2 1.8 51 520-587 20-70 (87)
3 d2zd1b1 e.8.1.2 (B:5-428) HIV- 23.3 14 0.00099 35.9 1.7 56 546-603 319-388 (424)
4 d1fs1b2 d.42.1.1 (B:2-68) Cycl 20.8 24 0.0018 25.6 2.3 34 418-456 12-45 (61)
5 d2e1za1 c.55.1.2 (A:4-192) Pro 17.4 6.8 0.00049 34.2 -1.9 40 312-352 137-177 (189)
6 d2nlua1 b.34.9.2 (A:1-100) Hep 17.4 28 0.002 27.1 2.1 37 562-598 11-55 (100)
7 d1eeja1 c.47.1.9 (A:61-216) Di 16.1 44 0.0032 26.6 3.0 32 415-446 121-156 (156)
8 d1khca_ b.34.9.2 (A:) DNA meth 16.1 21 0.0015 29.6 1.0 31 562-596 10-53 (137)
9 d2c9wc1 d.42.1.1 (C:17-112) El 15.3 16 0.0012 28.3 0.1 40 418-457 12-52 (96)
10 d1jmca2 b.40.4.3 (A:299-420) R 14.4 17 0.0012 29.1 -0.0 15 591-605 61-75 (122)
No 1
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.52 E-value=1.2 Score=34.45 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=25.2
Q ss_pred cCCceeecee-------eeEecCCCCc------cceeeeehhhhhccc
Q psy11719 562 QAGKVVWGKY-------AQVTNNPEND------GCINAVLLYVLFGTK 596 (657)
Q Consensus 562 ~~GKVVWgKY-------AqVTnrPgqD------GcINAVLLvi~~gk~ 596 (657)
.-|.+||||+ |+|.+.|+-. ...++-.+|..||++
T Consensus 3 ~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~~V~FFg~~ 50 (97)
T d2daqa1 3 HYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSH 50 (97)
T ss_dssp CSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTT
T ss_pred cCCCEEEEEcCCcCCCceEEcCHHHhhhHhhhcCCCCCeEEEEEccCC
Confidence 3689999998 7898877632 334555677888874
No 2
>d1sqra_ b.43.3.3 (A:) Ribosomal protein L35ae {Pyrococcus furiosus [TaxId: 2261]}
Probab=58.91 E-value=1.8 Score=35.19 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=36.5
Q ss_pred cEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccceeee
Q psy11719 520 ATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAV 587 (657)
Q Consensus 520 ~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcINAV 587 (657)
.|.-++|+||..-....-|...-+.- ++..|+|+||| ||.-.||.|+|.|.
T Consensus 20 ~~~Llkiegv~~k~~a~fylGKrv~y--------------~~~~~r~iwGK---Vtr~HGnsGvVrAk 70 (87)
T d1sqra_ 20 NVMIIKPLDVNSREEASKLIGRLVLW--------------KSPSGKILKGK---IVRVHGTKGAVRAR 70 (87)
T ss_dssp CEEEEEESCCCCHHHHHHHTTCEEEE--------------CCSTTCCEEEE---EEEESSSSSCEEEE
T ss_pred CEEEEEEcCcCCHHHHHhhcCcEEEE--------------ECCCCcEEEee---EeeecCCCceEEEE
Confidence 45678888886655555554433322 57799999998 66668999999997
No 3
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=23.26 E-value=14 Score=35.85 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=35.7
Q ss_pred cceEEEEecccccccc-----cCCcee-eceeeeEecCCCCccceeeeehh--------hhhccceecccCC
Q psy11719 546 KGTVIEVNISELGLVT-----QAGKVV-WGKYAQVTNNPENDGCINAVLLY--------VLFGTKFSTFELS 603 (657)
Q Consensus 546 KGTIIEVNVSELGLVT-----~~GKVV-WgKYAqVTnrPgqDGcINAVLLv--------i~~gk~~q~~n~~ 603 (657)
|-.|+||..|..|.++ +.+++. +|||++..+...| .+=|..+++ ++||+-.. +..|
T Consensus 319 kp~~~~~das~~g~~~~~~~q~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~k~~~e~~~~~g~~p~-~~~p 388 (424)
T d2zd1b1 319 KDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTN-DVKQLTEAVQKITTESIVIWGKTPK-FKLP 388 (424)
T ss_dssp SCCEEEEEEEETTEEEEEEESSTTCEEEEEEEECCSSCTTC-HHHHHHHHHHHHHHHHHHHHSSCCE-EEES
T ss_pred CCEEEEEecCCCCceEEEEEcCCCcccceEEeccccccccC-HHHHHHHHHHHHHHHHHHHhCcCcc-EECC
Confidence 4456777777777655 233544 5999998777666 444444444 88998773 4444
No 4
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.85 E-value=24 Score=25.56 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=26.6
Q ss_pred ceeecccccchhhHHhHHHHHHhhhhcccccccCccccc
Q psy11719 418 VYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRT 456 (657)
Q Consensus 418 aYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPlPKVr~ 456 (657)
.|.++|+-....+.|.+|+.. .|.=.+|||.|.+
T Consensus 12 ~f~v~~~~a~~S~tI~~ml~~-----~~~~~Ipl~~V~s 45 (61)
T d1fs1b2 12 IFEVDVEIAKQSVTIKTMLED-----LGMDPVPLPNVNA 45 (61)
T ss_dssp EEEEEGGGGGTCHHHHHHHHH-----TCCSSEECTTCCH
T ss_pred EEEecHHHHHHhHHHHHHHhc-----CCCCCcccCCcCH
Confidence 477889988899999999965 3444699998765
No 5
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=17.43 E-value=6.8 Score=34.18 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=30.4
Q ss_pred HhhhhhhHHhHhhHHHhhccCCChhHHHHHHHhcCCC-CCHH
Q psy11719 312 AMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRR-LDYE 352 (657)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~MP~QneyIE~h~Kr~GrR-lD~e 352 (657)
|..||-+-.||-+.-..++.| +..|-+..++|||.. |.|+
T Consensus 137 a~FDTaFh~t~p~~a~~yalP-~~~~~~~gIRRYGFHGlS~~ 177 (189)
T d2e1za1 137 AVFDTSFHQTLAPEAYLYGLP-WEYFSSLGVRRYGFHGTSHR 177 (189)
T ss_dssp EEETTGGGGGCCHHHHCCSSC-HHHHHTTCCSCCCSCHHHHH
T ss_pred EEeCCccccCCCHHHHHcCCC-HHHHHhcCceeechhHHhHH
Confidence 357999999999999999999 655544467888864 4443
No 6
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.41 E-value=28 Score=27.11 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=23.2
Q ss_pred cCCceeecee-------eeEecCCCCcccee-eeehhhhhcccee
Q psy11719 562 QAGKVVWGKY-------AQVTNNPENDGCIN-AVLLYVLFGTKFS 598 (657)
Q Consensus 562 ~~GKVVWgKY-------AqVTnrPgqDGcIN-AVLLvi~~gk~~q 598 (657)
.-|.+||||+ |+|.+.|.-...-+ ...+|..||++..
T Consensus 11 ~~GdlVWaK~~gypwWPa~V~~~~~~~~~~~~~~~~V~Ffg~~~~ 55 (100)
T d2nlua1 11 KCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHET 55 (100)
T ss_dssp STTCEEEEEETTEEEEEEEEECCTTSSCSCCCSCEEEEETTTTEE
T ss_pred CcCCEEEEecCCCCCCCEEEecchhhcccCCCCEEEEEEcCCCCE
Confidence 4689999997 78988765322211 1234577887543
No 7
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.13 E-value=44 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCCceee-c-c--cccchhhHHhHHHHHHhhhhccc
Q psy11719 415 ALPVYLL-D-R--DVQSRAKVLSNMIKQKRKEKAGK 446 (657)
Q Consensus 415 avPaYLL-D-R--e~~~~AKvLSn~IKQKRkEKAgK 446 (657)
..|++.+ | | .+...+..|..+|.+.+|+.+||
T Consensus 121 GTPt~~~~nG~~v~G~~~~e~l~~~i~~~~k~~~~k 156 (156)
T d1eeja1 121 GTPAVVLSNGTLVPGYQPPKEMKEFLDEHQKMTSGK 156 (156)
T ss_dssp SSSEEECTTSCEEESCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEeCCeEecCCCCHHHHHHHHHHHHHHhcCC
Confidence 5677555 4 4 34467899999999999999997
No 8
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.12 E-value=21 Score=29.61 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred cCCceeecee-------eeEecC------CCCccceeeeehhhhhccc
Q psy11719 562 QAGKVVWGKY-------AQVTNN------PENDGCINAVLLYVLFGTK 596 (657)
Q Consensus 562 ~~GKVVWgKY-------AqVTnr------PgqDGcINAVLLvi~~gk~ 596 (657)
..|.+||||. |+|++- +...|+ .+|..||..
T Consensus 10 ~~GdlVWaK~~g~pwWPg~V~~~~~~~~~~~~~~~----~~V~fFGd~ 53 (137)
T d1khca_ 10 GIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGM----RWVQWFGDG 53 (137)
T ss_dssp CTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTE----EEEEETTTC
T ss_pred ccCCEEEEecCCCCCCCeEEcChhhhccccCCCCc----EEEEEecCC
Confidence 3589999997 678763 333333 356788854
No 9
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=16 Score=28.26 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=22.0
Q ss_pred ceeecccccchhhHHhHHHHHHhhhhccc-ccccCcccccc
Q psy11719 418 VYLLDRDVQSRAKVLSNMIKQKRKEKAGK-WEVPIPKVRTQ 457 (657)
Q Consensus 418 aYLLDRe~~~~AKvLSn~IKQKRkEKAgK-w~VPlPKVr~i 457 (657)
.|.++|+-....+.+.+|+..-.....|+ =.+|||.|.+-
T Consensus 12 ~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~ 52 (96)
T d2c9wc1 12 EFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSH 52 (96)
T ss_dssp EEEEEHHHHTTSHHHHHC------------CEEECTTCCHH
T ss_pred EEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHH
Confidence 46778887778888888887655433332 24888888764
No 10
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.38 E-value=17 Score=29.07 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=9.3
Q ss_pred hhhccceecccCCCC
Q psy11719 591 VLFGTKFSTFELSEN 605 (657)
Q Consensus 591 i~~gk~~q~~n~~en 605 (657)
-+||.+|+.++..++
T Consensus 61 tLWg~~a~~~~~~~~ 75 (122)
T d1jmca2 61 TLWGEDADKFDGSRQ 75 (122)
T ss_dssp EEEHHHHHHCCCTTC
T ss_pred EEEchHhhhhCCCCC
Confidence 567777776654443
Done!