RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11719
(657 letters)
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein,
structural genomics, PSI-2; NMR {Methanothermobacter
thermautotrophicusstr} PDB: 2kcy_A
Length = 98
Score = 107 bits (269), Expect = 4e-28
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 495 PKFERFIRPM-------ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKG 547
+ R IR + +V PE I V +N +P + +IT+G
Sbjct: 2 DRRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRG 61
Query: 548 TVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 589
V+E T G +VT+ P DG IN VL+
Sbjct: 62 AVVE---------TNLGN------VRVTSRPGQDGVINGVLI 88
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function,
ribonucleoprotein, PSI-2, protein structure initiative;
NMR {Sulfolobus solfataricus P2}
Length = 133
Score = 90.3 bits (224), Expect = 1e-21
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 28/127 (22%)
Query: 470 KTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPM-------ALRFNKAHVTHPELKATF 522
+ KRK + R R + A+V P
Sbjct: 21 RDKRKYEIGNPPTFTTLSAEDIRIK------DRTLGGNFKVRLKYTTTANVLDPATNTAK 74
Query: 523 YLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDG 582
+ I+ + + P + G+I +G I T+AG A VT+ P DG
Sbjct: 75 KVKILEILETPANKELARRGIIIRGAKIR---------TEAGL------AVVTSRPGQDG 119
Query: 583 CINAVLL 589
INAVLL
Sbjct: 120 VINAVLL 126
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 339 ERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQ-MKKKIK 397
E RK R + +R ++ +A E +K + QR++E+++ K +
Sbjct: 85 ESIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWN--QRQSEQVEKNKINNR 139
Query: 398 AHEEKLTKQKHE 409
++ +Q
Sbjct: 140 IADKAFYQQPDA 151
Score = 37.8 bits (87), Expect = 0.004
Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 362 EPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLL 421
+ + ++ S+R K R ++ ++++ + + E +E+
Sbjct: 76 QADRLTQEPESIR--------KWREEQRKRLQEL----DAASKVMEQEWREKAK------ 117
Query: 422 DRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEV 462
+D++ + S + +K K + Q DA++
Sbjct: 118 -KDLEEWNQRQSEQV-EKNKINNRIAD---KAFYQQPDADI 153
Score = 33.2 bits (75), Expect = 0.17
Identities = 9/62 (14%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 352 EERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKK 411
+E + R+ RE ++ ++ ++ + + + + ++K K E+ +++ E+
Sbjct: 82 QEPESIRKWRE--EQRKR------LQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 412 EE 413
E+
Sbjct: 132 EK 133
Score = 32.1 bits (72), Expect = 0.32
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 390 IQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
I ++ E + K + E+++ L + D S+ +Q+ +EKA K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR------LQELDAASKVM------EQEWREKAKK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-05
Identities = 44/346 (12%), Positives = 96/346 (27%), Gaps = 72/346 (20%)
Query: 166 TAMCLISLHISSLATNMLSKFKEILDTY---------LTDKV---IIPDNHKKEITYQL- 212
+ + F + D L+ + II T +L
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 213 GTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSI--------HEPSYRVGPM- 263
T S+ ++ +F+ L N L++P+ +E S+ + Y +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 264 -------PQTVSNL--PLQPSQSSGTLWLKAM--CDALWLTAM-C-DALWLTAMCDAL-W 309
Q L L + + + + + W+ C M + W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 310 LK-AMCDTL-WLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRA 367
L C++ + M L + + R + R+ +P++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 368 ----EKARSVRKIKAKLYNKQ-R-----RNEKI------QMKKKIKAHEEKLTKQKHEKK 411
++ + A +N + R +++ I +T E K
Sbjct: 247 LLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 412 E---------EGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWE 448
LP R+V + ++I + ++ W+
Sbjct: 305 SLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWD 345
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 41.9 bits (97), Expect = 3e-04
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 334 HNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMK 393
+N KL + +E ++ +EA AEK R++ + + N I+M
Sbjct: 139 NNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQR--AIEENNNWIKMA 196
Query: 394 KKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
K+ A + + K+ E R + ++ RK K K
Sbjct: 197 KEKLAQKMESNKENREAHFAAM----------LERLQEKDKHAEEVRKNKELK 239
Score = 37.6 bits (86), Expect = 0.007
Identities = 12/151 (7%), Positives = 40/151 (26%), Gaps = 11/151 (7%)
Query: 332 SLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQ 391
E ++ + + +R + EK K + + R
Sbjct: 60 YQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQ----KMESNKENREAHFAA 115
Query: 392 MKKKIKAHEEKL-------TKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKA 444
M ++++ ++ ++ + + + + K + + EK
Sbjct: 116 MLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKR 175
Query: 445 GKWEVPIPKVRTQADAEVFKIVRSGKTKRKA 475
I + + + + K ++
Sbjct: 176 EHEREVIQRAIEENNNWIKMAKEKLAQKMES 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.001
Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 76/237 (32%)
Query: 131 AMCDTLW---LTTMCDAL----WLKAMC------DTLWLTTMCDALWL-----TAMCLIS 172
A D+ W ++ A+ ++ C +L + + D+L + M
Sbjct: 284 AETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM---- 338
Query: 173 LHISSLATNMLSKFKEILDTYL--TDKVII-----PDNHKKEIT------YQLGT----- 214
L IS+L + + +++L +V I N ++ Y L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKA 396
Query: 215 ------------FDSESVSVLLRFLPI-------YLETGDNRLLL-LTPMVSELNPWSIH 254
F + RFLP+ L + + L N I
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 255 EPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALW-LTAMCDALWL 310
P Y T L+ SG++ + + D + + W T A +
Sbjct: 457 IPVY------DTFDGSDLR--VLSGSI-SERIVDCI-IRLPVK--WETTTQFKATHI 501
Score = 37.3 bits (86), Expect = 0.020
Identities = 76/457 (16%), Positives = 132/457 (28%), Gaps = 168/457 (36%)
Query: 186 FKEILDTYLTDKVIIPD---------------NHKKEITYQLGTFDSESVSVLLRFLPIY 230
F+E+ D Y T V++ D E + G + +L +L
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LN------ILEWLENP 222
Query: 231 LETGDNRLLLLTPMVSELNPWSIHEP--------SYRVGPMPQTVSNLPLQPSQ-----S 277
T D LL P +S P Y V T L P +
Sbjct: 223 SNTPDKDYLLSIP-IS----C----PLIGVIQLAHYVV-----TAKLLGFTPGELRSYLK 268
Query: 278 SGTLWLKAMCDALWLTAMCDALW---LTAMCDAL----WLKAMC------DTLWLTTMCD 324
T + + A+ A D+ W ++ A+ ++ C +L + + D
Sbjct: 269 GATGHSQGLVTAV-AIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 325 ALWL-----TAM----SLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKA----- 370
+L + M +L E ++ + L K+ E +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP------------AGKQVEISLVNGA 374
Query: 371 ----------------RSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEG 414
++RK KA Q R I E KL K
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---------IPFSERKL------KFSNR 419
Query: 415 ALPV-------YLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVR 467
LPV L+ + + +++K A ++P V+
Sbjct: 420 FLPVASPFHSHLLVP----ASDLINKDLVKNNVSFNAKDIQIP-----------VYD-TF 463
Query: 468 SGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATF---YL 524
G R + ++ + R P K+E +F H+ F
Sbjct: 464 DGSDLRVLSGSISERIV---DCIIRLPVKWET-----TTQFKATHIL------DFGPGGA 509
Query: 525 PIIG--VKKNPNSPMYTNLGVITKGTVIEVNI-SELG 558
+G +N + T + VI GT+ ++N + G
Sbjct: 510 SGLGVLTHRNKDG---TGVRVIVAGTL-DINPDDDYG 542
Score = 33.9 bits (77), Expect = 0.20
Identities = 40/215 (18%), Positives = 66/215 (30%), Gaps = 65/215 (30%)
Query: 453 KVRTQADA---EVF-----KIVR-------------SGKTKRKAWKRMITKVCFVGENFT 491
V +AD + + IV GK R+ + MI + G+ T
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 492 RKPPKFERFIRPMALRFNKAHVTHPE--LKATFYL-PII--------------GVKKNPN 534
K K E + F + L AT + P + G+ +
Sbjct: 1704 EKIFK-EINEHSTSYTFR-----SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI-PAD 1756
Query: 535 SPM-------YTNL----GVITKGTVIEVNISELGLVTQ----AGKVVWGKYAQVTNNPE 579
+ Y L V++ +++EV + G+ Q ++ Y + NP
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 580 N--DGCINAVLLYVLFGTKFSTFELSE--NDNVPD 610
L YV+ T L E N NV +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Score = 30.8 bits (69), Expect = 2.1
Identities = 27/201 (13%), Positives = 53/201 (26%), Gaps = 69/201 (34%)
Query: 419 YLLDRDVQSRAKVLSNMIKQKRKEKAGKWEV-------------PIPKVRTQADAEVFKI 465
YL D+ + + + ++++ E+ P K A +F+
Sbjct: 95 YLEGNDIHA---LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA---LFRA 148
Query: 466 VRSGKTKRKAWKRMITKVCFVG------------ENFTRKPPKFERFIRPMA-------- 505
V G +++ F G + + I+ A
Sbjct: 149 VGEGNA------QLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 506 --LRFNKAH---------VTHPE--------LKATFYLPIIGVKKNPNSPMYTNLGVITK 546
L K + +P L P+IGV + + Y +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTAKLLG 257
Query: 547 GTVIEVNISELGLVTQAGKVV 567
T E+ G + +V
Sbjct: 258 FTPGELRSYLKGATGHSQGLV 278
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.8 bits (93), Expect = 0.003
Identities = 15/115 (13%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 338 IERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRR--NEKIQMKKK 395
ER +K + E++ + E + EK ++ ++ A+ + R +K ++++
Sbjct: 870 KERQQKAEAELKELEQKHTQLC-EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 396 IKAHEEKL------TKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKA 444
+ E ++ ++Q +K++ + L+ ++ + +K
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Score = 38.3 bits (89), Expect = 0.009
Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 338 IERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIK 397
I+ + + + + K + ++ +L + R +K + ++K
Sbjct: 824 IQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQK--AEAELK 881
Query: 398 AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWE 448
E+K T+ EK LL +Q+ ++ + + + + A K E
Sbjct: 882 ELEQKHTQLCEEKN--------LLQEKLQAETELYAEAEEMRVRLAAKKQE 924
Score = 32.1 bits (73), Expect = 0.68
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 30/129 (23%)
Query: 338 IERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRR----------- 386
+ ++L + E R + E R +AEK +K++ ++ + + +
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEK----KKMQQQMLDLEEQLEEEEAARQKL 974
Query: 387 -NEKIQMKKKIKAHEE----------KLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNM 435
EK+ KIK E+ KLTK++ +E V L ++ + N+
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER----VSDLTTNLAEEEEKAKNL 1030
Query: 436 IKQKRKEKA 444
K K K ++
Sbjct: 1031 TKLKNKHES 1039
Score = 31.0 bits (70), Expect = 1.8
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 22/125 (17%)
Query: 335 NEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARS---VRKIKAKLYNKQRRNEKIQ 391
+ +K+ + LD EE+ + EA + EK + ++K++ + + +N K+
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 392 MKKK------------IKAHEEK---LTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMI 436
++K + EEK LTK K++ + + L+ ++ K +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS----ELEVRLKKEEKSRQELE 1059
Query: 437 KQKRK 441
K KRK
Sbjct: 1060 KIKRK 1064
Score = 28.6 bits (64), Expect = 7.7
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 339 ERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKA 398
+++ KL R EER + EKA+++ K+K K + +E KK +
Sbjct: 997 DQNNKLTKERKLLEERVSDLT-TNLAEEEEKAKNLTKLKNKH--ESMISELEVRLKKEEK 1053
Query: 399 HEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKA 444
++L K K + + E + + ++Q++ L + +K +E
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIA-ELQAQIAELKAQLAKKEEELQ 1098
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 37.3 bits (86), Expect = 0.005
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 339 ERHRKLYGRRLDYEE-RKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIK 397
+RK + + + E +KR+R ++P+ R+ ++ I+ K K + ++
Sbjct: 55 AMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV-RDAAREAALR 113
Query: 398 AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
+E++ K K EKK + A + + ++++K + K + G
Sbjct: 114 EIKERIKKTKDEKKAKKA----EVAKSQKTQSKGGATQRGAKGPKIGGG 158
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 35.9 bits (82), Expect = 0.013
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 337 YIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKI 396
+K + D ++K+KR RA S+ +I + + + +K +
Sbjct: 57 RRRLWKK--VKATDIAQKKKKRNVT--VARAIVGISLEEINRRKNLDASHKKA-EAEKAV 111
Query: 397 KAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
+ ++K +K+ + L + ++ K KQ K GK
Sbjct: 112 RELKQKKANDIEKKRADRKLQGKDVKAAKKAETK----KTKQPVGAKGGK 157
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 36.3 bits (83), Expect = 0.036
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 3/128 (2%)
Query: 338 IERHRKLYGRRLDYEERKR-KREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKI 396
E K +RL+ E R R +R+ AEKAR +++ K +
Sbjct: 669 QEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR--KELLELEAMSMAVESTGNAKAEA 726
Query: 397 KAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRT 456
++ E + + L L + ++ + + + + + + E+ + K +
Sbjct: 727 ESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 457 QADAEVFK 464
A+ E K
Sbjct: 787 LANVEAKK 794
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 34.6 bits (79), Expect = 0.043
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 341 HRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHE 400
+R+ + + E +K++ +RA S+ I AK K K Q ++ I+A +
Sbjct: 55 YRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV-RKAQREQAIRAAK 113
Query: 401 EKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
E ++ KK A I + K A +
Sbjct: 114 EAKKAKQASKKTAMA-------AAKAPTKAAPKQKIVKPVKVSAPR 152
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.1 bits (80), Expect = 0.078
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 16/141 (11%)
Query: 305 CDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPH 364
CD + L+ M + + + + T + Y R KL + K + +
Sbjct: 269 CDFVKLREMLIRVNMEDLREQ---THTRHYELY--RRCKLEEMGFKDTDPDSKPFSLQET 323
Query: 365 KRAEKARSVRKIKAKLYN-KQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDR 423
A++ + +++ K +Q ++++ K+ EK +K ++ L +
Sbjct: 324 YEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDR----------LKK 373
Query: 424 DVQSRAKVLSNMIKQKRKEKA 444
Q K L + K E
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVN 394
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 35.1 bits (80), Expect = 0.084
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 330 AMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEK 389
A+ +++ + K+E +R K S + + + + +
Sbjct: 453 AILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLK--SAKADAKVMKDAKTKKVV 510
Query: 390 IQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQK-RKEKAGKWE 448
KK ++ EE+L K + + + + + N + + KW
Sbjct: 511 ESKKKAVQRLEEQLMKLEVQATDR-------EENKQIALGTSKLNYLDPRITVAWCKKWG 563
Query: 449 VPIPKVRTQADAEVFK 464
VPI K+ + E F
Sbjct: 564 VPIEKIYNKTQREKFA 579
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 34.2 bits (78), Expect = 0.15
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 335 NEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQM-K 393
+E+ + Y +R D+ + + E K + + + ++ I +++ +
Sbjct: 575 SEFYYVRLEYYQKRKDHMSERLQWEV---EKYSFQVKFIKMI---------IEKELTVTN 622
Query: 394 KKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWE 448
K A ++L + + P Y D + +++ E
Sbjct: 623 KPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHE 677
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.0 bits (76), Expect = 0.15
Identities = 25/177 (14%), Positives = 61/177 (34%), Gaps = 13/177 (7%)
Query: 309 WLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAE 368
W + + T+ A W+ MS E H ++ L ++ ++ + ++ +
Sbjct: 66 WRQLVEKGPQYGTVEKA-WMAFMSEAERVSELHLEV-KASLMNDDFEKIKNWQKEAFHKQ 123
Query: 369 KARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKE-EGALPVYLLDRDVQS 427
K+ + + +K K +KL + + KK A L ++
Sbjct: 124 MMGG---------FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREA 174
Query: 428 RAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVC 484
+K ++ ++ K+ K E V + + K ++ + + +V
Sbjct: 175 NSKADPSLNPEQLKKLQDKIEKCKQDV-LKTKEKYEKSLKELDQGTPQYMENMEQVF 230
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena
thermophila} PDB: 2xzn_2
Length = 208
Score = 33.2 bits (75), Expect = 0.17
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 26/117 (22%)
Query: 465 IVRSGKTKRKA---------WKR--------MITKVCFVGENFTRKPPKFERFIRPM--- 504
I R K KR+A KR +TK+ ++ T + R +R
Sbjct: 3 ISRDSKHKRRATGGRMPVHRKKRAFEKGRPISMTKL--TTQSTTITEKRRIRPVRVRGGH 60
Query: 505 ----ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISEL 557
ALR + + + T I+ VK N + + K +++E++ +
Sbjct: 61 LKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPF 117
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 32.4 bits (73), Expect = 0.21
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 341 HRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHE 400
R + G L + K +R + ++A + ++ K K ++ K + K
Sbjct: 79 QRPITGASL--DLIKERRSLKPEVRKANREEKLKANKEKKK-AEKAARKAEKAKSAGTQS 135
Query: 401 EKLTKQKHEK 410
K +KQ+ +
Sbjct: 136 SKFSKQQAKG 145
Score = 28.9 bits (64), Expect = 3.4
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 9/124 (7%)
Query: 355 KRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEG 414
K+++ R + +K + K+R + ++ ++ I L K++ K E
Sbjct: 41 KQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPE- 99
Query: 415 ALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRK 474
+R + L ++K+ EKA + TQ+ + + K
Sbjct: 100 --------VRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVA 151
Query: 475 AWKR 478
A R
Sbjct: 152 ATSR 155
Score = 28.2 bits (62), Expect = 5.5
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 347 RRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKL 403
R L E RK RE + + +K KA+ K++ K +K+
Sbjct: 94 RSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 33.7 bits (76), Expect = 0.21
Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 348 RLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQK 407
+ D E+ RKRE E ++++ KL +K K++ K + + ++++
Sbjct: 356 QKDLEKSLRKREHLE-----------KEVEKKLESKSGNKNKMEAKAQANSQKDEIFALI 404
Query: 408 HEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 442
K+ ++++ + LS+ +++ K+
Sbjct: 405 -NKEANRDARAIAYTQNLKGIKRELSDKLEKISKD 438
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A
{Artificial gene} PDB: 1y69_8
Length = 123
Score = 31.8 bits (73), Expect = 0.22
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 352 EERKRKREAREPHKRAEKAR-SVRKIKAKLYNKQRRNEKIQMKKKIKAHE 400
EER K + AE+AR +VR + R+ + K E
Sbjct: 45 EER-IKDWLKIVRGEAEQARVAVRNV--------GRDANDKAAALGKDKE 85
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 32.3 bits (73), Expect = 0.30
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHKRAE--KARSVRKIKAKLYNKQR--RNEKIQMKKK 395
K GR Y +RK REAR P + + R +R++ AK + + ++ + K+
Sbjct: 67 AQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKE 126
Query: 396 IKAHEEK----LTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEV 449
K + K L + + K + L + R K + ++ ++ + +
Sbjct: 127 SKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDAL 184
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.9 bits (74), Expect = 0.37
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 328 LTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRR- 386
L M N Y + R+ R + R +A + + + V K + ++
Sbjct: 322 LRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTV 381
Query: 387 -----NEKIQMKKKIKAHEEKLTKQKHEKK 411
+ + KK + K+ EKK
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 32.1 bits (72), Expect = 0.48
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 319 LTTMCDALWLTAMSLHNEYI----ERHRKLYGRRLDYEERKRKREAREPHK----RAEKA 370
T + A + E E KR + + +A +
Sbjct: 106 ATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQE 165
Query: 371 RSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEE 413
R ++I + + K + +K +++KL +++ E
Sbjct: 166 RLKKEINNSHIQEVVQTIK-LLTEKTARYQQKLEEKQAENLRA 207
Score = 29.8 bits (66), Expect = 2.3
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 347 RRLDYEERKRKREAREPHKRAEKARSVRKIK---AKLYNKQRRNEKIQMKKKIKAHEEKL 403
L E + + R + AK+ R + ++K ++ E
Sbjct: 77 VELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSE--- 133
Query: 404 TKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEV 449
+ K++ L+ R +V+ K ++ K E+
Sbjct: 134 -SNIKDIKKK-------LEAKRLDRIQVMMRSTSDKAAQERLKKEI 171
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.4 bits (74), Expect = 0.58
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 20/105 (19%)
Query: 338 IERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIK 397
+ E +K K EAR E+ +K+ L N+ +Q+++KI
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEAR----SVER---YKKLHIGL-----ENKIMQLQRKID 938
Query: 398 AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 442
++ + L+ + + L + +++ R
Sbjct: 939 EQNKEYKSLLEKMNN--------LEITYSTETEKLRSDVERLRMS 975
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.59
Identities = 7/16 (43%), Positives = 13/16 (81%), Gaps = 3/16 (18%)
Query: 368 EKARSVRKIKA--KLY 381
EK ++++K++A KLY
Sbjct: 18 EK-QALKKLQASLKLY 32
Score = 30.7 bits (68), Expect = 0.78
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 406 QKHE-KKEEGALPVYLLDRDVQSRAKVLSNMIK 437
+K KK + +L +Y D S A L+ IK
Sbjct: 18 EKQALKKLQASLKLYADD----S-APALA--IK 43
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 176
Score = 31.1 bits (70), Expect = 0.61
Identities = 25/117 (21%), Positives = 35/117 (29%), Gaps = 17/117 (14%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMK------ 393
K GR Y +RK REAR P + R +R ++ +L K R KI
Sbjct: 66 AQSKREGRHSGYGKRKGTREARLPSQVVWIRR-LRVLR-RLLAKYRDAGKIDKHLYHVLY 123
Query: 394 KKIK----AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 446
K+ K H+ L + A + A A
Sbjct: 124 KESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAA 175
>1w9r_A CBPA-R2, choline binding protein A; receptor, polymeric
immunoglobulin receptor, PIGR, adhesion, invasion,
pathogenesis; NMR {Streptococcus pneumoniae}
Length = 119
Score = 30.4 bits (67), Expect = 0.70
Identities = 14/79 (17%), Positives = 31/79 (39%)
Query: 335 NEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKK 394
N ++ L + + +K E + A++ R+ K+K + + + +
Sbjct: 33 NYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLE 92
Query: 395 KIKAHEEKLTKQKHEKKEE 413
KIK +K ++ K E
Sbjct: 93 KIKTDRKKAEEEAKRKAAE 111
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 31.2 bits (70), Expect = 0.76
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKK----- 394
K GR +RK R AR P K R +++ +L K R +KI +
Sbjct: 67 LEAKRKGRHTGSGKRKGTRNARMPTKVLWMRR--QRVLRRLLRKYRAAKKIDKHQYHEFY 124
Query: 395 -KIK----AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 443
K ++ L + H K + L Q A+ N + ++ +
Sbjct: 125 LGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTS---QQEARRAKNTASRAKRNE 175
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.65A
{Bacillus anthracis}
Length = 209
Score = 31.1 bits (71), Expect = 0.81
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 352 EERKRKREAREPHKRAEKAR-SVRKIKAKLYNKQRRNEKIQMKKKIKAHE 400
EER R+ + K AE+A+ +VR + RR+ +KK KA E
Sbjct: 131 EER-RRDLVKVVKKYAEEAKVAVRNV--------RRDGNDDLKKLEKAGE 171
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 30.8 bits (69), Expect = 0.89
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHKRA------------EKARSVRKIKAKLYNKQRRN 387
K GR Y +R+ REAR P K K R +KI +Y+
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLK 126
Query: 388 EKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 443
K M K + E + K K EK E L Q AK + ++RK
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTL-------SDQFEAKRAKSKASRERKIA 175
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 30.6 bits (70), Expect = 0.99
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 352 EERKRKREAREPHKRAEKAR-SVRKIKAKLYNKQRRNEKIQMKKKIKAHE 400
EER RK R + AE+ R ++R I RR ++KK K
Sbjct: 108 EER-RKDLVRAVRQYAEEGRVAIRNI--------RREALDKLKKLAKELH 148
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 1.0
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 329 TAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAE---KARSVRKIKAKLYNKQR 385
A++ + + + R + +R ++ +A E KA+ + + ++Q
Sbjct: 87 AAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 146
Query: 386 RNEKIQMKKKIKAHEEKLTKQKHE 409
K + ++ +Q
Sbjct: 147 EKN----KINNRIADKAFYQQPDA 166
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 30.9 bits (69), Expect = 1.2
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 13/177 (7%)
Query: 309 WLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAE 368
W + + T+ A W+ MS E H ++ ++ + K K +E +
Sbjct: 73 WRQLVEKGPQYGTVEKA-WMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHK-- 129
Query: 369 KARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTK-QKHEKKEEGALPVYLLDRDVQS 427
+ K+ + + +K K +KL + + +K A L ++
Sbjct: 130 --------QMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREA 181
Query: 428 RAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVC 484
+K ++ ++ K+ K E V + + K ++ + + +V
Sbjct: 182 NSKADPSLNPEQLKKLQDKIEKCKQDV-LKTKEKYEKSLKELDQGTPQYMENMEQVF 237
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 351 YEERKRK-RE--AREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQK 407
Y++ R + E A R KL +QR+ + +++ A
Sbjct: 240 YKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKA---SLVERLNALNSSAGADD 296
Query: 408 HEKKEE 413
+++E+
Sbjct: 297 DDEEED 302
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 29.3 bits (66), Expect = 1.7
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 342 RKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEE 401
+L + K+ R P + +++ R L +K +++ M+ K+++ E
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERR--------LASKAQKSSVKAMRGKVRSGRE 140
Score = 28.6 bits (64), Expect = 3.0
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 353 ERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKK---KIKAHEEKLTKQKHE 409
E ++R H V IKA+ Y Q N + + + IK + ++
Sbjct: 50 EYYKERLLAASHHLISSD-GVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPT 108
Query: 410 KKEEGALPVYLLDRDVQSRAKVLSNMIKQKRK 441
+ + ++ + +K + +K R
Sbjct: 109 RPTRAS-------KERRLASKAQKSSVKAMRG 133
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 30.6 bits (68), Expect = 1.8
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 13/177 (7%)
Query: 309 WLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAE 368
W + + T+ A W+ MS E H ++ ++ + K K +E +
Sbjct: 73 WRQLVEKGPQYGTVEKA-WMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHK-- 129
Query: 369 KARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTK-QKHEKKEEGALPVYLLDRDVQS 427
+ K+ + + +K K +KL + + +K A L ++
Sbjct: 130 --------QMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREA 181
Query: 428 RAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVC 484
+K ++ ++ K+ K E V + + K ++ + + +V
Sbjct: 182 NSKADPSLNPEQLKKLQDKIEKCKQDV-LKTKEKYEKSLKELDQGTPQYMENMEQVF 237
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 29.6 bits (66), Expect = 2.1
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 340 RHRKLYGRRLDYEERKRKREAREP------------HKRAEKARSVRKIKAKLYNKQRRN 387
+ GR + +RK AR P + + R +KI +Y+
Sbjct: 67 TLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLK 126
Query: 388 EKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKW 447
K + K + E + K K +K + L R R+K +++ + +A K
Sbjct: 127 VKGNVFKNKRILMEHIHKLKADKARKKLLADQAEAR----RSKTKEARKRREERLQAKKE 182
Query: 448 EV 449
E+
Sbjct: 183 EI 184
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 29.5 bits (67), Expect = 2.1
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 33/127 (25%)
Query: 350 DYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKL-----T 404
E R R + R ++AE A ++K L E + + ++A E K+
Sbjct: 46 ALEARIRAQAKRLAERKAE-A---ERLKEIL-------ENLTLTIPVRAGETKIYGSVTA 94
Query: 405 KQKHE--KKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEV 462
K E ++ G +D + L IK+ G++ + K + ++
Sbjct: 95 KDIAEALSRQHG----VTIDP----KRLALEKPIKE-----LGEYVLTY-KPHPEVPIQL 140
Query: 463 -FKIVRS 468
+V
Sbjct: 141 KVSVVAQ 147
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3*
2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3
2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Length = 64
Score = 27.6 bits (62), Expect = 2.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 452 PKVRT-QADAEVFKIVRSGKTKR-KAWKRMITKVCFVGENFTRKPPKFERFIRPMAL 506
PK++T + A+ FK G K A R I T+K K +R +RP A+
Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLRHI---------LTKKATKRKRHLRPKAM 48
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I
1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 29.1 bits (66), Expect = 2.3
Identities = 15/126 (11%), Positives = 44/126 (34%), Gaps = 32/126 (25%)
Query: 350 DYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKL-----T 404
E + R E R+ ++A A + ++L + ++ ++A E K+
Sbjct: 45 TLEAQLRSIEKRQAQEKAV-A---EDLASRL-------NGVAVELSVRAGEGKIYGAVTH 93
Query: 405 KQKHEKKEEGALPVYLLDRDVQSRAKV-LSNMIKQKRKEKAGKWEVPIPKVRTQADAEV- 462
+ ++ V R K+ + +K+ G++++ + + +
Sbjct: 94 QDVANSLDQLGFDV--------DRRKIDMPKTVKE-----VGEYDIAY-RAHPEVTIPMK 139
Query: 463 FKIVRS 468
+ +
Sbjct: 140 LVVHAA 145
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 30.3 bits (67), Expect = 2.7
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 351 YEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEK 410
Y E KR + + EK + + L + NE + ++ + +K+ K E
Sbjct: 15 YTESDIKRNHKTEKNKTEKEK-FKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEI 73
Query: 411 KEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPI 451
E +Y D D+ ++ ++K + +VP
Sbjct: 74 YSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPF 114
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation,
signal transduction inhibitor, hydrolase in; 1.80A
{Saccharomyces cerevisiae}
Length = 234
Score = 29.4 bits (65), Expect = 3.1
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 349 LDYEERKRKREAREPHKRAEKARSVRKIKAKLYNK--QRRNEKIQMKKKIKAHEEKLTKQ 406
LD ++ ++ + + K + +R EKI++ ++ K KL
Sbjct: 124 LDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEKIELFQRNKEISTKLHCL 183
Query: 407 KHEKKEEGA 415
+ E K
Sbjct: 184 ELELKNNDE 192
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 29.7 bits (66), Expect = 3.3
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 328 LTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRN 387
+ A SL + Y H + + K ++ K A S + + KL ++R
Sbjct: 231 IDADSLEDIYTSAHEAIR------ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERA- 283
Query: 388 EKIQMKKK 395
++ K
Sbjct: 284 ARVAAKIA 291
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 28.7 bits (63), Expect = 5.0
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 334 HNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMK 393
I H ++D EER+ ++ + A + + ++Q NE Q
Sbjct: 20 MPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKA--DRQALNEHFQ-- 75
Query: 394 KKIKAHEEKLTKQKHEKKEE 413
++ EE+++ ++ E
Sbjct: 76 SILQTLEEQVSGERQRLVET 95
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 29.0 bits (64), Expect = 5.1
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 19/111 (17%)
Query: 320 TTMCDALWLTAMSLHNEYIERHRKLYG---RRLDYEERKRKREAREPHKRAEKA-----R 371
T + ++ R Y + E+ RK E +E + +K +
Sbjct: 75 TLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRK-EFKEQWMKEQKRMNEAVQ 133
Query: 372 SVRKIKAKLYNKQR----------RNEKIQMKKKIKAHEEKLTKQKHEKKE 412
++R+ + + + + Q +E+ + + E +
Sbjct: 134 ALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQA 184
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 27.3 bits (60), Expect = 5.8
Identities = 8/65 (12%), Positives = 27/65 (41%)
Query: 349 LDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKH 408
+ E + + + + R +K + Y R +++ K++++ + +L ++
Sbjct: 16 MSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVE 75
Query: 409 EKKEE 413
+ E
Sbjct: 76 KLASE 80
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 28.7 bits (63), Expect = 6.2
Identities = 22/177 (12%), Positives = 64/177 (36%), Gaps = 13/177 (7%)
Query: 309 WLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAE 368
W + + ++ A W M+ ++ E H+++ L+ + K K ++ + +
Sbjct: 64 WRQLIEKGPQYGSLERA-WGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHK-- 120
Query: 369 KARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTK-QKHEKKEEGALPVYLLDRDVQS 427
+ K+ + + +K K +K+ + + +K A L +
Sbjct: 121 --------QIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREM 172
Query: 428 RAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVC 484
+K ++ +++K+ K + V + + K++ + + +V
Sbjct: 173 NSKTEQSVTPEQQKKLVDKVDKCRQDV-QKTQEKYEKVLEDVGKTTPQYMEGMEQVF 228
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 28.7 bits (63), Expect = 6.3
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 354 RKRKREAREPHKRAEKARSVRKIKAKLYN-------KQRRNEKIQMKKKIKAHEEKLTKQ 406
K+K+ A P +K + K K K+RRN K+++ T +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 407 KHEKKE 412
K +K
Sbjct: 66 KARRKL 71
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 28.7 bits (63), Expect = 6.6
Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 16/116 (13%)
Query: 347 RRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQ 406
R+ Y+ K +R + + E K ++ ++ + E K
Sbjct: 190 RKKVYKAEKTQRYVKTNAAKEE--------YEKFLSEWKKQRAAKAHAASAPVVEAPKKV 241
Query: 407 KHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEV 462
+ KK + + ++ + + DA+
Sbjct: 242 EAPKKVD--------PKAAKTTPAATKATPAATKVAPKTQAAKTTTPAPAVKDAKK 289
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 28.1 bits (62), Expect = 6.8
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHK--RAEKARSVRKIKAKLYNKQRRNEKI--QMKKK 395
K GR +RK R AR P K + R +R++ K ++ ++ +
Sbjct: 67 LEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLG 126
Query: 396 IKAHEEK----LTKQKHEKK 411
K + K L + H K
Sbjct: 127 SKGNLYKNKTVLIEAIHVSK 146
>3dxl_A Allergen AED A 2; odorant-binding protein, all-helical, secreted;
1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A* 3dzt_A*
Length = 303
Score = 28.7 bits (63), Expect = 7.0
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 323 CDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYN 382
C A++ +H + + + L+ + E K E R +K + K Y
Sbjct: 106 CAAVFKAYDPVHKAHKDTSKNLF--HGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYP 163
Query: 383 KQR---------RNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRD---VQSRAK 430
R + K H + + K ++ L V + RD V K
Sbjct: 164 AGSDKRQQLCQIRQYTVLDDALFKEHTDCVMKGIRYITKDNQLDVEEVKRDFKLVNKDTK 223
Query: 431 VLSNMIKQKRKEKAGK 446
L ++ + ++
Sbjct: 224 ALEEVLNDCKSKEPSN 239
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 28.2 bits (62), Expect = 7.9
Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 12/164 (7%)
Query: 321 TMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKL 380
T A W ++ + H K+ + + K +E + RK L
Sbjct: 64 TTEAA-WKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDL 122
Query: 381 YNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKR 440
+ K ++ + K KA K K E A Q R + + +
Sbjct: 123 FKKAQKPWAKLLAKVEKA---KADYHSACKTERSA--------TNQERNANADSSLSPDQ 171
Query: 441 KEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVC 484
+K + + + + + +T V
Sbjct: 172 VKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVF 215
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 28.1 bits (62), Expect = 8.3
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 351 YEERKRKREAREPHKRAEK--ARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEK 402
Y++ +++ K + R + K+ Q+++ Q K +E+
Sbjct: 240 YKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 26.6 bits (59), Expect = 8.5
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 21/74 (28%)
Query: 355 KRKREAREPHKRAEKARSVR-KIKAKLY--------NKQRRN---------EKIQ-MKKK 395
+ + E R H EK R I K+ + + N + I+ ++
Sbjct: 1 QSRGEKRTAHNAIEKRY--RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHS 58
Query: 396 IKAHEEKLTKQKHE 409
+ +++ +
Sbjct: 59 NQKLKQENLSLRTA 72
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 27.8 bits (61), Expect = 9.2
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 336 EYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKK 395
E +KL GRRLD+ K+KR+ + P + +A +++ + + M
Sbjct: 153 EIQHHLKKLEGRRLDFGY-KKKRQGKIPDEELRQALEK-------FDESKEIAESSMFNL 204
Query: 396 IKAHEEKL 403
++ E++
Sbjct: 205 LEMDIEQV 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.435
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,023,720
Number of extensions: 600933
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 82
Length of query: 657
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 557
Effective length of database: 3,909,693
Effective search space: 2177699001
Effective search space used: 2177699001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)