RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11719
(657 letters)
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 37.9 bits (88), Expect = 8e-04
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 350 DYEERKRKREAREPHKRAEKA----------RSVRKIKAKLYNKQRRNEKIQMKKKIKAH 399
+ +++ E R ++ AE R V + + N + K ++ +K++++
Sbjct: 46 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105
Query: 400 EEKLTKQKHEKKE 412
+E E
Sbjct: 106 KENREAHLAAMLE 118
Score = 31.0 bits (70), Expect = 0.18
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 352 EERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKK 411
ER+ ++A E + K + K+ + + E + E+ ++ K
Sbjct: 75 HEREVIQKAIEENNNFIKMAKEKL-AQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
Query: 412 EE 413
+E
Sbjct: 134 KE 135
Score = 26.8 bits (59), Expect = 5.2
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 369 KARSVRKIKAKLYNK-QRRNEKIQMK-KKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQ 426
+ S+ +I+ KL +RR + K + E + + EE + + +
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Query: 427 SRAKVLSNMIKQKRKEK 443
+ + +
Sbjct: 100 QKMESNKENREAHLAAM 116
Score = 26.4 bits (58), Expect = 6.2
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 361 REPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYL 420
P A R ++ K E + +K +A K +K E + E
Sbjct: 28 GVPEFNASLPRRRDPSLEEIQKKLEAAE--ERRKYQEAELLKHLAEKREHERE------- 78
Query: 421 LDRDVQSRAKVLSNMIKQKRKEK 443
+ + M K+K +K
Sbjct: 79 VIQKAIEENNNFIKMAKEKLAQK 101
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 38.5 bits (89), Expect = 0.002
Identities = 12/111 (10%), Positives = 29/111 (26%), Gaps = 2/111 (1%)
Query: 338 IERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIK 397
+ER R L E++ + A + + ++ K
Sbjct: 140 LERIRIANDTTLSPEQKAARLAALD--AQLTPDERAQQAALHAQQDAVTKIADLQKAGAT 197
Query: 398 AHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWE 448
+ + + E A + D + + + ++ R G
Sbjct: 198 PDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAP 248
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 36.6 bits (84), Expect = 0.008
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 322 MCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLY 381
++ +A LH + + + + Y+E ++ + + R + +
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK---------- 261
Query: 382 NKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEE 413
+Q R ++++++ + +E K+ K E
Sbjct: 262 -EQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 32.4 bits (73), Expect = 0.13
Identities = 16/111 (14%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 347 RRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQ 406
+ D ++++E +AE A++ AK+ ++ +R + M++K ++++E L +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQA----SAKMLHEMQRKNEQMMEQKERSYQEHLKQL 248
Query: 407 KHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQ 457
+ + + + +R + + + ++K+ ++++ + I ++T+
Sbjct: 249 TEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 30.5 bits (69), Expect = 0.28
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)
Query: 340 RHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKA--KLYNKQRRNEKI------Q 391
+ ++ YG + RK K AR+ K +I+A + R +
Sbjct: 66 QKKRAYGHQKGAGSRKGKAGARQN----SKEDWESRIRAQRTKLRELRDEGTLSSSQYRD 121
Query: 392 MKKKIK 397
+ K
Sbjct: 122 LYDKAG 127
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 29.1 bits (65), Expect = 0.29
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 355 KRKREAREPHKRAEKARSVRKIKAKLY-------NKQRRNEKIQMKKKIKAHEEKLTKQK 407
+ + E R H EK I K+ + + K + +K + L
Sbjct: 1 QSRGEKRTAHNAIEKRY-RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSN 59
Query: 408 HEKKEE 413
+ K+E
Sbjct: 60 QKLKQE 65
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 28.5 bits (64), Expect = 0.67
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 14/83 (16%)
Query: 401 EKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADA 460
EK E K Y ++ + N ++ ++V + KV T
Sbjct: 13 EKAYAGFAEGK-------YTFWVHPKATKTEIKNAVETA-------FKVKVVKVNTLHVR 58
Query: 461 EVFKIVRSGKTKRKAWKRMITKV 483
K + KR K+ I +V
Sbjct: 59 GKKKRLGRYLGKRPDRKKAIVQV 81
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 30.2 bits (67), Expect = 0.75
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 367 AEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKH---EKKEEGALPVYLLDR 423
A+ AR I + N+ R + ++ +KA+ + + +E L LL R
Sbjct: 9 AKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKR 68
Query: 424 DVQSRAKVLSNMIKQKRK 441
+ M++ +
Sbjct: 69 LDLFKGDKFEVMLQGIKD 86
>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus
thermophilus [TaxId: 274]}
Length = 64
Score = 26.1 bits (58), Expect = 2.2
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 452 PKVRT-QADAEVFKIVRSGKTKR-KAWKRMITKVCFVGENFTRKPPKFERFIRPMAL 506
PK++T + + KI SGK K KR + +K K R +
Sbjct: 1 PKMKTHKGAKKRVKITASGKVVAMKTGKRHL---------NWQKSGKEIRQKGRKFV 48
>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia coli
[TaxId: 562]}
Length = 64
Score = 26.1 bits (58), Expect = 2.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 452 PKVRT-QADAEVFKIVRSGKTKR-KAWKRMITKVCFVGENFTRKPPKFERFIRPMAL 506
PK++T + A+ FK G K A R T+K K +R +RP A+
Sbjct: 1 PKIKTVRGAAKRFKKTGKGGFKHKHANLR---------HILTKKATKRKRHLRPKAM 48
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 27.0 bits (60), Expect = 2.7
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 401 EKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADA 460
EK Y ++ + + I+Q + V + + T
Sbjct: 13 EKAYSAMERGV-------YSFWVSPKATKTEIKDAIQQA-------FGVRVIGISTMNVP 58
Query: 461 EVFKIVRSGKTKRKAWKRMITKV 483
K V +R K+ I ++
Sbjct: 59 GKRKRVGRFIGQRNDRKKAIVRL 81
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 27.2 bits (60), Expect = 3.0
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 349 LDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKH 408
LD E ++ K+ +E + + + ++ K EE L +++
Sbjct: 33 LDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92
Query: 409 E 409
Sbjct: 93 R 93
>gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35
[Deinococcus geothermalis DSM 11300]
gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S
ribosomal protein L35 gi|94554961|gb|ABF44875.1|
ribosomal protein L35 [Deinococcus geothermalis DSM
11300] E=4e-21 s/c=1.69 id=84% cov=98%
Length = 61
Score = 25.4 bits (56), Expect = 4.1
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 452 PKVRT-QADAEVFKIVRSGKTKR-KAWKRMITKVCFVGENFTRKPPKFERFIRPMAL 506
PK++T ++ K+ +GK K+ KR T K R +
Sbjct: 1 PKMKTKKSMTRRVKVTATGKVMAFKSGKRHQ---------NTGKSGDEIRGKGKGFV 48
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 26.2 bits (58), Expect = 4.9
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 447 WEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMI 480
+EV + V T K +R WK+
Sbjct: 51 FEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAY 84
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 26.3 bits (58), Expect = 7.8
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 443 KAGKWEVP--IPKVRTQADAEVFKIVRSGKTKRKAWKRMITKV 483
+ EVP V E F+ ++ GK ++WK+ I K+
Sbjct: 95 RNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKI 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.133 0.435
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,492,553
Number of extensions: 120252
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 27
Length of query: 657
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 566
Effective length of database: 1,158,166
Effective search space: 655521956
Effective search space used: 655521956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)