Query psy1172
Match_columns 276
No_of_seqs 364 out of 2831
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0854|consensus 100.0 1E-36 2.2E-41 248.0 9.9 122 1-124 82-203 (224)
2 COG0450 AhpC Peroxiredoxin [Po 100.0 2.4E-34 5.2E-39 239.8 9.6 111 1-121 83-193 (194)
3 PRK13599 putative peroxiredoxi 100.0 4E-32 8.6E-37 235.5 12.5 124 1-134 78-213 (215)
4 cd03016 PRX_1cys Peroxiredoxin 100.0 2E-31 4.4E-36 229.5 11.8 124 1-133 75-202 (203)
5 PRK13191 putative peroxiredoxi 100.0 3E-30 6.5E-35 223.8 11.6 125 1-135 83-212 (215)
6 PRK13189 peroxiredoxin; Provis 100.0 1.6E-29 3.4E-34 220.4 12.2 124 1-134 85-220 (222)
7 PRK13190 putative peroxiredoxi 100.0 2.6E-29 5.7E-34 216.2 11.3 122 1-133 77-201 (202)
8 COG1225 Bcp Peroxiredoxin [Pos 99.9 1.4E-27 3.1E-32 195.1 12.1 110 152-271 3-112 (157)
9 KOG0852|consensus 99.9 1.8E-26 3.8E-31 188.1 8.6 101 1-111 83-183 (196)
10 PTZ00137 2-Cys peroxiredoxin; 99.9 2E-25 4.3E-30 197.8 10.6 96 17-119 160-255 (261)
11 PRK15000 peroxidase; Provision 99.9 2.1E-25 4.6E-30 191.5 10.3 101 1-111 84-184 (200)
12 PRK10382 alkyl hydroperoxide r 99.9 6.3E-24 1.4E-28 180.4 8.9 90 17-112 90-180 (187)
13 COG0450 AhpC Peroxiredoxin [Po 99.9 2E-23 4.3E-28 174.4 10.7 121 152-276 2-129 (194)
14 PRK13191 putative peroxiredoxi 99.9 3.4E-23 7.3E-28 179.7 12.3 121 152-276 6-129 (215)
15 PRK13190 putative peroxiredoxi 99.9 5.1E-23 1.1E-27 177.1 12.7 119 153-276 2-122 (202)
16 cd03013 PRX5_like Peroxiredoxi 99.9 4.8E-23 1E-27 170.2 10.8 106 155-269 1-113 (155)
17 PRK13599 putative peroxiredoxi 99.9 8.5E-23 1.8E-27 177.2 12.8 111 153-267 2-112 (215)
18 TIGR03137 AhpC peroxiredoxin. 99.9 7.3E-23 1.6E-27 174.1 11.9 116 154-275 3-123 (187)
19 PRK13189 peroxiredoxin; Provis 99.9 9.8E-23 2.1E-27 177.7 12.9 120 153-276 9-131 (222)
20 PRK10382 alkyl hydroperoxide r 99.9 9.6E-23 2.1E-27 173.2 11.6 117 154-276 3-124 (187)
21 PRK15000 peroxidase; Provision 99.9 1.7E-22 3.7E-27 173.5 12.3 120 154-276 3-130 (200)
22 PTZ00253 tryparedoxin peroxida 99.9 3E-22 6.6E-27 171.9 9.3 92 17-114 98-189 (199)
23 PTZ00137 2-Cys peroxiredoxin; 99.9 1.4E-21 3E-26 173.4 12.2 113 151-267 66-183 (261)
24 cd03016 PRX_1cys Peroxiredoxin 99.9 1.4E-21 3.1E-26 168.2 11.8 108 155-267 1-109 (203)
25 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.3E-21 2.9E-26 154.1 10.7 103 155-267 1-103 (124)
26 cd03014 PRX_Atyp2cys Peroxired 99.9 1.7E-21 3.6E-26 158.0 11.3 105 155-270 2-107 (143)
27 PTZ00253 tryparedoxin peroxida 99.9 1.7E-21 3.7E-26 167.2 11.3 120 153-276 6-132 (199)
28 cd03015 PRX_Typ2cys Peroxiredo 99.9 3.1E-21 6.7E-26 161.9 12.4 110 155-268 1-115 (173)
29 cd03018 PRX_AhpE_like Peroxire 99.9 3.7E-21 8E-26 156.7 11.3 108 153-268 1-109 (149)
30 PRK00522 tpx lipid hydroperoxi 99.9 4.6E-21 1E-25 160.1 12.0 106 152-268 17-123 (167)
31 PRK09437 bcp thioredoxin-depen 99.8 2.6E-20 5.6E-25 153.0 12.0 105 153-267 4-108 (154)
32 cd02970 PRX_like2 Peroxiredoxi 99.8 4.2E-20 9E-25 149.9 9.7 100 158-266 1-100 (149)
33 cd03017 PRX_BCP Peroxiredoxin 99.8 6.5E-20 1.4E-24 147.7 10.3 101 157-267 1-101 (140)
34 PF08534 Redoxin: Redoxin; In 99.8 1.4E-19 2.9E-24 147.2 9.2 102 154-265 1-104 (146)
35 cd00340 GSH_Peroxidase Glutath 99.8 1.4E-19 3E-24 148.8 8.2 97 159-264 2-107 (152)
36 KOG0855|consensus 99.8 3.4E-19 7.4E-24 144.5 8.4 108 152-269 62-170 (211)
37 cd02971 PRX_family Peroxiredox 99.8 1.5E-18 3.3E-23 139.6 11.0 102 158-268 1-102 (140)
38 PTZ00056 glutathione peroxidas 99.8 1.2E-18 2.5E-23 149.7 10.2 88 155-250 15-110 (199)
39 TIGR03137 AhpC peroxiredoxin. 99.8 9.1E-19 2E-23 148.9 9.2 90 17-113 90-180 (187)
40 KOG0852|consensus 99.8 1.6E-18 3.5E-23 141.6 8.3 119 154-276 5-129 (196)
41 PLN02399 phospholipid hydroper 99.7 3.5E-18 7.6E-23 149.7 9.4 91 154-252 74-173 (236)
42 PLN02412 probable glutathione 99.7 3.1E-18 6.6E-23 143.1 8.5 98 157-264 7-115 (167)
43 PTZ00256 glutathione peroxidas 99.7 3.3E-18 7.1E-23 145.0 8.2 88 155-250 16-113 (183)
44 TIGR02540 gpx7 putative glutat 99.7 4.5E-18 9.7E-23 139.9 7.8 83 160-250 3-94 (153)
45 cd02968 SCO SCO (an acronym fo 99.7 2.1E-17 4.5E-22 133.4 10.8 103 158-268 1-111 (142)
46 cd02969 PRX_like1 Peroxiredoxi 99.7 3.6E-17 7.7E-22 136.8 10.2 103 156-269 1-112 (171)
47 PRK03147 thiol-disulfide oxido 99.7 2.3E-16 5.1E-21 131.4 11.4 107 151-268 33-140 (173)
48 cd03015 PRX_Typ2cys Peroxiredo 99.7 1.3E-16 2.8E-21 133.8 9.8 83 17-105 91-173 (173)
49 TIGR02661 MauD methylamine deh 99.7 1.6E-16 3.4E-21 135.4 10.4 104 152-269 45-149 (189)
50 PRK15412 thiol:disulfide inter 99.7 9.7E-17 2.1E-21 136.2 8.8 103 153-269 39-145 (185)
51 cd02967 mauD Methylamine utili 99.7 8.7E-16 1.9E-20 119.3 10.2 96 160-269 1-98 (114)
52 cd03012 TlpA_like_DipZ_like Tl 99.6 2.8E-16 6.1E-21 124.9 7.1 87 169-266 13-105 (126)
53 cd03010 TlpA_like_DsbE TlpA-li 99.6 5E-16 1.1E-20 123.3 8.3 98 157-268 1-102 (127)
54 cd03008 TryX_like_RdCVF Trypar 99.6 1.2E-15 2.5E-20 124.5 8.8 93 171-271 17-117 (146)
55 TIGR00385 dsbE periplasmic pro 99.6 1.5E-15 3.2E-20 127.5 8.9 102 153-268 34-139 (173)
56 PRK10606 btuE putative glutath 99.6 4E-15 8.6E-20 125.9 9.5 86 157-251 3-97 (183)
57 COG2077 Tpx Peroxiredoxin [Pos 99.6 5.8E-15 1.3E-19 118.4 9.4 112 152-274 17-132 (158)
58 COG1225 Bcp Peroxiredoxin [Pos 99.5 2.4E-14 5.1E-19 117.4 8.8 73 16-89 84-156 (157)
59 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 3.9E-14 8.5E-19 111.4 8.3 92 160-267 1-94 (123)
60 cd02966 TlpA_like_family TlpA- 99.5 6.9E-14 1.5E-18 106.8 9.0 94 161-265 1-96 (116)
61 PRK14018 trifunctional thiored 99.5 5.9E-14 1.3E-18 135.3 10.2 105 153-270 32-143 (521)
62 cd03009 TryX_like_TryX_NRX Try 99.5 1.2E-13 2.6E-18 110.3 8.4 96 164-268 3-101 (131)
63 cd02964 TryX_like_family Trypa 99.5 1.4E-13 3.1E-18 110.2 8.6 93 168-269 5-102 (132)
64 KOG0854|consensus 99.5 1.3E-13 2.8E-18 113.1 7.9 111 153-267 6-119 (224)
65 PLN02919 haloacid dehalogenase 99.5 1.4E-13 3.1E-18 143.5 8.8 105 154-268 392-504 (1057)
66 PF10417 1-cysPrx_C: C-termina 99.4 3.6E-14 7.7E-19 90.0 1.0 37 87-123 1-37 (40)
67 COG0678 AHP1 Peroxiredoxin [Po 99.4 1.7E-12 3.6E-17 104.1 8.3 112 153-271 3-123 (165)
68 TIGR01626 ytfJ_HI0045 conserve 99.3 3.7E-12 8E-17 107.6 8.2 107 153-270 23-149 (184)
69 PF13905 Thioredoxin_8: Thiore 99.3 9E-12 2E-16 93.6 7.8 84 180-269 1-85 (95)
70 PRK13728 conjugal transfer pro 99.3 4.8E-12 1.1E-16 106.4 6.9 61 154-225 50-110 (181)
71 KOG0541|consensus 99.3 2.5E-11 5.3E-16 97.9 8.6 114 152-272 8-130 (171)
72 PF02630 SCO1-SenC: SCO1/SenC; 99.0 3.3E-09 7.2E-14 89.2 10.5 105 155-267 28-139 (174)
73 TIGR02738 TrbB type-F conjugat 98.9 1.9E-09 4.2E-14 88.7 5.0 48 169-225 44-91 (153)
74 PRK00522 tpx lipid hydroperoxi 98.8 1.6E-08 3.5E-13 84.3 8.5 68 17-87 97-167 (167)
75 KOG2501|consensus 98.8 2.1E-08 4.5E-13 81.9 8.1 99 162-267 15-116 (157)
76 cd02985 TRX_CDSP32 TRX family, 98.7 2.6E-08 5.7E-13 76.3 6.9 55 178-235 13-67 (103)
77 PRK09437 bcp thioredoxin-depen 98.7 5.7E-08 1.2E-12 79.5 8.4 69 17-86 85-153 (154)
78 cd03013 PRX5_like Peroxiredoxi 98.7 3.5E-08 7.6E-13 81.4 7.0 55 19-76 90-145 (155)
79 COG1999 Uncharacterized protei 98.7 1.4E-07 3E-12 81.6 10.3 103 161-266 49-155 (207)
80 cd02948 TRX_NDPK TRX domain, T 98.6 8E-08 1.7E-12 73.4 6.2 47 179-226 16-62 (102)
81 cd02950 TxlA TRX-like protein 98.6 5.6E-08 1.2E-12 79.0 5.1 85 164-254 3-88 (142)
82 cd03018 PRX_AhpE_like Peroxire 98.6 1.7E-07 3.8E-12 75.8 7.9 65 17-87 83-149 (149)
83 cd03017 PRX_BCP Peroxiredoxin 98.6 2.2E-07 4.8E-12 74.4 7.6 63 17-83 78-140 (140)
84 cd02999 PDI_a_ERp44_like PDIa 98.6 1.2E-07 2.6E-12 72.4 5.4 45 176-223 14-58 (100)
85 KOG2792|consensus 98.5 3.1E-07 6.7E-12 80.2 8.4 101 160-268 120-228 (280)
86 cd03014 PRX_Atyp2cys Peroxired 98.5 3.5E-07 7.5E-12 73.8 7.6 58 20-83 83-142 (143)
87 PF00255 GSHPx: Glutathione pe 98.5 7.2E-07 1.6E-11 69.1 8.8 79 161-248 3-90 (108)
88 TIGR02740 TraF-like TraF-like 98.4 2.7E-07 5.9E-12 82.9 5.3 62 158-224 140-206 (271)
89 cd02963 TRX_DnaJ TRX domain, D 98.4 8.9E-07 1.9E-11 68.7 6.6 47 178-225 22-68 (111)
90 COG0386 BtuE Glutathione perox 98.4 2.2E-06 4.7E-11 69.6 8.6 84 158-249 4-95 (162)
91 cd02956 ybbN ybbN protein fami 98.3 2.4E-06 5.1E-11 64.0 6.2 46 179-226 11-56 (96)
92 cd02969 PRX_like1 Peroxiredoxi 98.3 5.6E-06 1.2E-10 69.0 8.9 62 17-90 87-153 (171)
93 cd02993 PDI_a_APS_reductase PD 98.2 1.7E-06 3.8E-11 66.7 5.3 45 179-224 20-64 (109)
94 cd02953 DsbDgamma DsbD gamma f 98.2 5.7E-06 1.2E-10 63.0 7.9 68 179-251 10-81 (104)
95 cd02970 PRX_like2 Peroxiredoxi 98.2 2.3E-06 4.9E-11 68.9 5.8 53 17-69 78-147 (149)
96 cd03003 PDI_a_ERdj5_N PDIa fam 98.2 1.9E-06 4.2E-11 65.3 5.0 45 179-225 17-61 (101)
97 cd02959 ERp19 Endoplasmic reti 98.2 2.8E-06 6.1E-11 66.7 5.7 74 178-257 17-91 (117)
98 cd03000 PDI_a_TMX3 PDIa family 98.2 3.7E-06 8.1E-11 64.2 6.0 45 179-224 14-60 (104)
99 cd02962 TMX2 TMX2 family; comp 98.2 3.9E-06 8.6E-11 69.0 6.2 46 179-225 46-91 (152)
100 cd02951 SoxW SoxW family; SoxW 98.2 6.5E-06 1.4E-10 64.9 7.1 69 179-252 12-94 (125)
101 cd02954 DIM1 Dim1 family; Dim1 98.1 5.9E-06 1.3E-10 64.6 6.1 46 179-226 13-58 (114)
102 KOG0855|consensus 98.1 7.7E-06 1.7E-10 67.2 6.8 70 13-87 141-210 (211)
103 cd02971 PRX_family Peroxiredox 98.1 1.1E-05 2.4E-10 64.3 7.5 60 18-80 79-138 (140)
104 cd03006 PDI_a_EFP1_N PDIa fami 98.1 8.4E-06 1.8E-10 63.7 6.3 46 179-226 28-73 (113)
105 KOG0907|consensus 98.1 7.8E-06 1.7E-10 63.2 5.6 51 179-235 20-70 (106)
106 PRK09381 trxA thioredoxin; Pro 98.1 9.4E-06 2E-10 62.3 6.0 46 179-226 20-65 (109)
107 cd02994 PDI_a_TMX PDIa family, 98.0 1.2E-05 2.6E-10 60.8 6.0 46 178-225 15-60 (101)
108 cd02952 TRP14_like Human TRX-r 98.0 7.2E-06 1.6E-10 64.7 4.9 44 179-224 20-70 (119)
109 cd03012 TlpA_like_DipZ_like Tl 98.0 1E-05 2.3E-10 63.9 5.7 42 17-70 83-124 (126)
110 cd02986 DLP Dim1 family, Dim1- 98.0 1.4E-05 3E-10 62.3 6.1 52 179-235 13-64 (114)
111 PHA02278 thioredoxin-like prot 98.0 1.3E-05 2.9E-10 61.5 5.8 44 179-224 13-56 (103)
112 cd03005 PDI_a_ERp46 PDIa famil 98.0 1.2E-05 2.7E-10 60.4 5.6 44 181-225 17-62 (102)
113 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 2E-05 4.4E-10 59.8 6.6 45 179-225 18-62 (104)
114 PF00578 AhpC-TSA: AhpC/TSA fa 98.0 1.4E-05 3E-10 62.3 5.7 45 17-67 80-124 (124)
115 cd03002 PDI_a_MPD1_like PDI fa 98.0 1E-05 2.3E-10 61.8 4.9 54 179-235 17-70 (109)
116 PLN00410 U5 snRNP protein, DIM 98.0 1.7E-05 3.7E-10 64.4 6.2 52 179-235 22-73 (142)
117 KOG0910|consensus 97.9 1.5E-05 3.3E-10 64.7 5.1 52 179-235 60-111 (150)
118 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 1.7E-05 3.7E-10 59.8 5.1 44 180-224 18-62 (104)
119 KOG1651|consensus 97.9 1.6E-05 3.4E-10 65.3 5.0 64 157-222 12-75 (171)
120 PLN02412 probable glutathione 97.9 1.5E-05 3.2E-10 66.5 4.5 67 17-88 92-163 (167)
121 cd02949 TRX_NTR TRX domain, no 97.9 3.9E-05 8.6E-10 57.7 6.4 45 179-225 12-56 (97)
122 PF05988 DUF899: Bacterial pro 97.9 0.00011 2.5E-09 62.9 9.6 102 156-267 43-150 (211)
123 cd02996 PDI_a_ERp44 PDIa famil 97.9 4.9E-05 1.1E-09 58.3 6.7 46 179-225 17-67 (108)
124 TIGR01626 ytfJ_HI0045 conserve 97.9 4.5E-05 9.7E-10 64.6 6.9 59 18-88 121-182 (184)
125 cd02997 PDI_a_PDIR PDIa family 97.8 3E-05 6.6E-10 58.4 5.3 55 179-235 16-71 (104)
126 PTZ00051 thioredoxin; Provisio 97.8 5.3E-05 1.2E-09 56.7 6.4 43 179-224 17-59 (98)
127 PF00837 T4_deiodinase: Iodoth 97.8 4.6E-05 1E-09 66.5 6.5 106 154-267 74-203 (237)
128 PRK10996 thioredoxin 2; Provis 97.8 5.3E-05 1.2E-09 61.2 6.3 45 179-225 51-95 (139)
129 cd02998 PDI_a_ERp38 PDIa famil 97.8 6.7E-05 1.5E-09 56.4 6.4 54 179-235 17-71 (105)
130 PTZ00256 glutathione peroxidas 97.8 1.5E-05 3.2E-10 67.4 2.8 67 17-88 104-180 (183)
131 cd02984 TRX_PICOT TRX domain, 97.8 6.9E-05 1.5E-09 55.9 6.1 43 180-224 14-56 (97)
132 TIGR02540 gpx7 putative glutat 97.8 4.9E-05 1.1E-09 62.2 5.6 65 17-88 85-152 (153)
133 TIGR01126 pdi_dom protein disu 97.7 6.8E-05 1.5E-09 56.1 5.6 45 179-224 12-57 (102)
134 PF00085 Thioredoxin: Thioredo 97.7 0.0001 2.3E-09 55.1 6.0 52 179-235 16-67 (103)
135 cd02992 PDI_a_QSOX PDIa family 97.7 0.00015 3.4E-09 56.4 7.0 54 180-235 19-74 (114)
136 TIGR00424 APS_reduc 5'-adenyly 97.7 7E-05 1.5E-09 72.0 5.8 46 179-225 370-415 (463)
137 cd03001 PDI_a_P5 PDIa family, 97.6 0.00015 3.2E-09 54.6 6.1 44 180-225 18-61 (103)
138 PF08534 Redoxin: Redoxin; In 97.6 0.00019 4.2E-09 57.7 7.0 54 17-73 83-136 (146)
139 COG0526 TrxA Thiol-disulfide i 97.6 0.00017 3.6E-09 53.7 5.9 45 177-223 29-73 (127)
140 PRK15412 thiol:disulfide inter 97.6 0.00029 6.4E-09 59.6 8.0 56 17-88 119-175 (185)
141 TIGR00385 dsbE periplasmic pro 97.6 0.00019 4.1E-09 60.0 6.8 55 17-87 114-169 (173)
142 TIGR01295 PedC_BrcD bacterioci 97.6 0.0002 4.3E-09 56.7 6.3 41 179-223 22-62 (122)
143 PRK03147 thiol-disulfide oxido 97.6 0.0004 8.7E-09 57.4 8.2 57 17-89 116-172 (173)
144 cd02957 Phd_like Phosducin (Ph 97.5 0.00019 4.1E-09 55.6 5.7 49 180-235 24-72 (113)
145 TIGR01068 thioredoxin thioredo 97.5 0.00022 4.8E-09 53.0 5.8 44 180-225 14-57 (101)
146 cd02961 PDI_a_family Protein D 97.5 0.00028 6E-09 52.1 6.0 53 179-235 14-67 (101)
147 PLN02309 5'-adenylylsulfate re 97.4 0.00023 5E-09 68.4 5.8 44 179-223 364-407 (457)
148 COG3118 Thioredoxin domain-con 97.4 0.00024 5.2E-09 63.8 5.5 45 179-225 42-86 (304)
149 cd02989 Phd_like_TxnDC9 Phosdu 97.4 0.00046 9.9E-09 53.7 6.5 44 179-225 21-64 (113)
150 PTZ00443 Thioredoxin domain-co 97.4 0.00027 5.9E-09 61.7 5.7 43 180-224 52-94 (224)
151 PF13098 Thioredoxin_2: Thiore 97.4 0.00026 5.6E-09 54.3 4.9 47 179-226 4-52 (112)
152 cd02968 SCO SCO (an acronym fo 97.4 0.00019 4.1E-09 57.3 4.1 52 17-69 84-141 (142)
153 cd02955 SSP411 TRX domain, SSP 97.3 0.0011 2.4E-08 52.6 7.8 74 179-254 14-92 (124)
154 cd02975 PfPDO_like_N Pyrococcu 97.3 0.00063 1.4E-08 52.9 6.3 43 180-225 22-64 (113)
155 cd02947 TRX_family TRX family; 97.3 0.00073 1.6E-08 48.7 6.3 42 180-224 10-51 (93)
156 cd02965 HyaE HyaE family; HyaE 97.3 0.00053 1.2E-08 53.3 5.6 52 179-235 26-79 (111)
157 PRK00293 dipZ thiol:disulfide 97.3 0.00063 1.4E-08 67.4 7.4 71 178-254 472-546 (571)
158 cd01659 TRX_superfamily Thiore 97.2 0.0015 3.3E-08 42.8 6.3 45 184-231 1-45 (69)
159 cd02987 Phd_like_Phd Phosducin 97.2 0.00083 1.8E-08 56.5 5.9 42 180-224 83-124 (175)
160 TIGR00411 redox_disulf_1 small 97.1 0.0014 3.1E-08 47.0 6.2 40 183-224 2-41 (82)
161 cd03010 TlpA_like_DsbE TlpA-li 97.1 0.0014 3.1E-08 51.4 6.4 45 17-73 77-122 (127)
162 cd00340 GSH_Peroxidase Glutath 97.1 0.00048 1.1E-08 56.2 3.6 56 17-73 84-144 (152)
163 PF13899 Thioredoxin_7: Thiore 97.1 0.0031 6.6E-08 45.9 7.2 50 179-229 16-67 (82)
164 cd02982 PDI_b'_family Protein 97.0 0.0016 3.5E-08 48.9 5.4 51 180-235 12-62 (103)
165 PTZ00102 disulphide isomerase; 96.9 0.0013 2.8E-08 63.2 5.7 45 179-224 374-419 (477)
166 cd03011 TlpA_like_ScsD_MtbDsbE 96.9 0.0038 8.2E-08 48.5 7.3 50 17-83 71-120 (123)
167 TIGR01130 ER_PDI_fam protein d 96.9 0.0018 4E-08 61.6 6.4 45 179-224 17-63 (462)
168 COG4312 Uncharacterized protei 96.9 0.0031 6.7E-08 54.2 6.9 97 161-267 54-156 (247)
169 cd02988 Phd_like_VIAF Phosduci 96.9 0.0019 4E-08 55.2 5.4 43 179-224 101-143 (192)
170 PF13728 TraF: F plasmid trans 96.8 0.0019 4.2E-08 56.1 5.1 44 177-224 117-160 (215)
171 cd03065 PDI_b_Calsequestrin_N 96.8 0.003 6.5E-08 49.8 5.6 51 181-235 28-83 (120)
172 PLN02399 phospholipid hydroper 96.8 0.0021 4.7E-08 56.6 5.1 69 17-89 162-234 (236)
173 TIGR02661 MauD methylamine deh 96.8 0.0029 6.3E-08 53.7 5.6 55 17-86 125-179 (189)
174 TIGR01130 ER_PDI_fam protein d 96.7 0.0028 6.2E-08 60.3 6.0 46 179-225 363-410 (462)
175 KOG0908|consensus 96.6 0.0022 4.8E-08 56.3 4.1 43 179-224 20-62 (288)
176 PRK13703 conjugal pilus assemb 96.6 0.0025 5.4E-08 56.5 4.3 44 177-224 140-183 (248)
177 TIGR00412 redox_disulf_2 small 96.6 0.0065 1.4E-07 43.7 5.7 40 184-227 2-41 (76)
178 TIGR02739 TraF type-F conjugat 96.5 0.0031 6.8E-08 56.1 4.5 45 177-225 147-191 (256)
179 cd02966 TlpA_like_family TlpA- 96.5 0.0069 1.5E-07 45.3 5.9 41 17-69 75-115 (116)
180 cd02973 TRX_GRX_like Thioredox 96.5 0.0084 1.8E-07 41.5 5.8 39 184-225 3-41 (67)
181 PTZ00102 disulphide isomerase; 96.5 0.0036 7.7E-08 60.2 4.8 44 179-223 48-93 (477)
182 PF13911 AhpC-TSA_2: AhpC/TSA 96.5 0.0058 1.3E-07 47.3 5.1 55 203-266 2-56 (115)
183 PTZ00056 glutathione peroxidas 96.4 0.017 3.6E-07 49.5 8.2 64 17-89 101-178 (199)
184 PTZ00062 glutaredoxin; Provisi 96.4 0.006 1.3E-07 52.6 5.2 40 181-223 18-57 (204)
185 KOG4498|consensus 96.3 0.01 2.2E-07 50.0 6.0 103 142-253 15-117 (197)
186 TIGR02187 GlrX_arch Glutaredox 96.2 0.057 1.2E-06 46.6 10.5 40 182-224 135-174 (215)
187 PRK13728 conjugal transfer pro 96.2 0.023 4.9E-07 48.1 7.6 58 18-89 112-171 (181)
188 cd02960 AGR Anterior Gradient 96.2 0.013 2.8E-07 46.9 5.6 68 179-254 22-91 (130)
189 PRK14018 trifunctional thiored 95.9 0.028 6E-07 55.0 7.6 54 20-89 120-173 (521)
190 TIGR02196 GlrX_YruB Glutaredox 95.6 0.055 1.2E-06 37.3 6.5 44 184-235 2-46 (74)
191 PHA02125 thioredoxin-like prot 95.6 0.029 6.2E-07 40.1 5.1 41 184-235 2-42 (75)
192 TIGR02187 GlrX_arch Glutaredox 95.6 0.021 4.6E-07 49.4 5.2 44 178-223 17-62 (215)
193 PF06110 DUF953: Eukaryotic pr 95.4 0.039 8.4E-07 43.4 5.6 46 179-225 18-69 (119)
194 PF13911 AhpC-TSA_2: AhpC/TSA 95.4 0.064 1.4E-06 41.4 6.9 53 17-69 34-112 (115)
195 cd03008 TryX_like_RdCVF Trypar 95.3 0.024 5.3E-07 46.2 4.3 35 22-68 95-129 (146)
196 cd02967 mauD Methylamine utili 95.2 0.04 8.8E-07 42.0 5.1 37 17-67 74-111 (114)
197 cd02958 UAS UAS family; UAS is 95.1 0.1 2.3E-06 40.1 7.2 67 179-251 16-85 (114)
198 cd03026 AhpF_NTD_C TRX-GRX-lik 95.1 0.064 1.4E-06 39.8 5.8 46 177-225 9-54 (89)
199 TIGR02200 GlrX_actino Glutared 95.0 0.1 2.3E-06 36.5 6.4 41 184-232 2-42 (77)
200 PLN02919 haloacid dehalogenase 95.0 0.062 1.3E-06 57.2 7.2 56 17-88 480-535 (1057)
201 KOG0190|consensus 94.8 0.034 7.5E-07 53.7 4.3 35 179-214 383-417 (493)
202 COG2077 Tpx Peroxiredoxin [Pos 94.7 0.03 6.6E-07 45.6 3.1 49 18-69 98-148 (158)
203 smart00594 UAS UAS domain. 94.5 0.19 4.1E-06 39.4 7.3 69 179-253 26-97 (122)
204 cd03007 PDI_a_ERp29_N PDIa fam 94.1 0.17 3.7E-06 39.6 6.1 54 179-235 17-74 (116)
205 cd03009 TryX_like_TryX_NRX Try 94.1 0.033 7.1E-07 43.8 2.1 38 18-68 79-116 (131)
206 KOG0190|consensus 94.1 0.063 1.4E-06 52.0 4.4 54 180-235 42-95 (493)
207 PF09695 YtfJ_HI0045: Bacteria 93.8 0.14 3.1E-06 42.1 5.3 58 17-89 100-158 (160)
208 PF14595 Thioredoxin_9: Thiore 93.8 0.088 1.9E-06 42.0 4.1 70 177-252 38-107 (129)
209 PF04592 SelP_N: Selenoprotein 93.5 0.32 6.9E-06 42.6 7.2 64 155-224 6-72 (238)
210 TIGR02180 GRX_euk Glutaredoxin 93.2 0.21 4.5E-06 35.7 4.9 36 184-223 1-36 (84)
211 KOG0191|consensus 92.5 0.81 1.8E-05 43.0 9.2 43 180-223 162-205 (383)
212 KOG3425|consensus 92.4 0.36 7.9E-06 37.8 5.5 47 179-226 24-77 (128)
213 KOG0191|consensus 92.2 0.26 5.7E-06 46.4 5.4 52 179-235 46-97 (383)
214 COG4232 Thiol:disulfide interc 91.9 0.27 5.9E-06 48.3 5.2 72 178-254 472-546 (569)
215 PF13905 Thioredoxin_8: Thiore 91.8 0.06 1.3E-06 39.6 0.6 34 19-64 59-95 (95)
216 cd02950 TxlA TRX-like protein 91.0 1.7 3.6E-05 35.0 8.2 56 18-89 52-110 (142)
217 PRK11200 grxA glutaredoxin 1; 90.9 0.63 1.4E-05 33.7 5.2 37 184-223 3-39 (85)
218 KOG0466|consensus 90.9 0.058 1.3E-06 49.1 -0.4 100 48-158 240-339 (466)
219 cd02976 NrdH NrdH-redoxin (Nrd 90.7 0.89 1.9E-05 31.0 5.6 33 184-224 2-34 (73)
220 KOG0912|consensus 90.5 0.25 5.4E-06 44.9 3.1 44 180-224 13-58 (375)
221 TIGR02738 TrbB type-F conjugat 89.7 1.1 2.3E-05 36.8 6.2 32 52-87 119-151 (153)
222 cd03023 DsbA_Com1_like DsbA fa 89.1 0.87 1.9E-05 36.0 5.2 38 180-220 5-42 (154)
223 cd02066 GRX_family Glutaredoxi 88.2 1.9 4.1E-05 29.1 5.8 43 184-234 2-44 (72)
224 PF00837 T4_deiodinase: Iodoth 87.5 2.4 5.2E-05 37.3 7.1 56 18-88 180-236 (237)
225 PF13462 Thioredoxin_4: Thiore 85.7 3.1 6.8E-05 33.3 6.6 48 173-222 6-54 (162)
226 PF00462 Glutaredoxin: Glutare 85.7 2.3 5E-05 28.4 5.0 33 185-225 2-34 (60)
227 TIGR02190 GlrX-dom Glutaredoxi 84.7 3.1 6.6E-05 29.7 5.4 45 182-234 8-52 (79)
228 COG3054 Predicted transcriptio 84.6 3.7 8E-05 33.7 6.3 51 23-86 129-180 (184)
229 TIGR02183 GRXA Glutaredoxin, G 83.7 2.9 6.3E-05 30.5 5.0 49 185-235 2-51 (86)
230 cd03028 GRX_PICOT_like Glutare 83.4 3.6 7.8E-05 30.2 5.5 40 177-223 4-46 (90)
231 TIGR00365 monothiol glutaredox 82.7 4.6 0.0001 30.2 5.9 40 178-224 9-51 (97)
232 PF13098 Thioredoxin_2: Thiore 82.3 4 8.7E-05 30.6 5.6 41 29-85 72-112 (112)
233 COG1999 Uncharacterized protei 81.2 3.4 7.5E-05 35.6 5.3 59 26-89 142-204 (207)
234 cd02951 SoxW SoxW family; SoxW 80.7 3.9 8.5E-05 31.6 5.1 46 28-89 73-119 (125)
235 COG0678 AHP1 Peroxiredoxin [Po 80.6 4.6 0.0001 33.1 5.4 50 20-71 99-148 (165)
236 cd02964 TryX_like_family Trypa 80.5 2.7 5.9E-05 32.9 4.2 28 29-68 89-116 (132)
237 cd03020 DsbA_DsbC_DsbG DsbA fa 80.4 3 6.5E-05 35.2 4.6 25 180-205 77-101 (197)
238 cd03418 GRX_GRXb_1_3_like Glut 79.7 7.9 0.00017 26.7 6.0 42 187-235 4-46 (75)
239 PF05176 ATP-synt_10: ATP10 pr 79.4 3.6 7.9E-05 36.6 5.0 66 157-224 99-167 (252)
240 cd03419 GRX_GRXh_1_2_like Glut 79.1 4.7 0.0001 28.3 4.7 35 184-224 2-36 (82)
241 TIGR02194 GlrX_NrdH Glutaredox 78.9 5.6 0.00012 27.7 5.0 32 187-225 3-34 (72)
242 PF13778 DUF4174: Domain of un 78.2 6.2 0.00013 30.8 5.5 46 30-90 68-113 (118)
243 TIGR02740 TraF-like TraF-like 78.2 5.3 0.00012 35.9 5.7 51 21-88 212-263 (271)
244 PRK10877 protein disulfide iso 77.8 4.4 9.5E-05 35.5 5.0 37 179-220 106-142 (232)
245 PHA03050 glutaredoxin; Provisi 77.5 4.5 9.8E-05 31.1 4.4 25 179-205 11-35 (108)
246 cd03019 DsbA_DsbA DsbA family, 77.1 6.4 0.00014 32.0 5.6 38 179-218 14-51 (178)
247 cd03029 GRX_hybridPRX5 Glutare 75.8 7.1 0.00015 27.0 4.8 33 187-226 5-37 (72)
248 PRK10329 glutaredoxin-like pro 75.3 10 0.00022 27.3 5.6 31 187-224 5-35 (81)
249 TIGR02189 GlrX-like_plant Glut 75.2 6.5 0.00014 29.5 4.7 36 180-224 7-42 (99)
250 cd03027 GRX_DEP Glutaredoxin ( 73.5 13 0.00028 25.8 5.6 39 190-235 8-47 (73)
251 PF05988 DUF899: Bacterial pro 73.4 13 0.00029 32.1 6.6 77 19-104 129-206 (211)
252 cd02991 UAS_ETEA UAS family, E 72.7 8.5 0.00018 29.9 4.9 51 179-235 16-72 (116)
253 COG0695 GrxC Glutaredoxin and 72.3 9.5 0.00021 27.5 4.8 42 187-235 5-48 (80)
254 KOG1731|consensus 72.2 2.1 4.6E-05 42.1 1.6 40 182-222 59-100 (606)
255 PRK10638 glutaredoxin 3; Provi 71.9 12 0.00026 26.8 5.3 32 187-225 6-37 (83)
256 cd02956 ybbN ybbN protein fami 71.2 17 0.00038 26.2 6.2 47 22-85 49-95 (96)
257 PF07976 Phe_hydrox_dim: Pheno 70.8 18 0.00039 30.0 6.7 74 150-223 27-116 (169)
258 PF09695 YtfJ_HI0045: Bacteria 70.1 46 0.001 27.5 8.8 107 154-270 2-127 (160)
259 COG2179 Predicted hydrolase of 70.1 16 0.00034 30.6 6.0 44 200-249 48-91 (175)
260 PF05176 ATP-synt_10: ATP10 pr 69.9 3.6 7.8E-05 36.7 2.5 36 28-73 203-238 (252)
261 TIGR01352 tonB_Cterm TonB fami 69.2 15 0.00031 25.3 5.1 39 51-89 11-50 (74)
262 cd03688 eIF2_gamma_II eIF2_gam 69.1 3 6.4E-05 32.4 1.5 54 103-159 41-94 (113)
263 cd02948 TRX_NDPK TRX domain, T 69.1 24 0.00052 26.2 6.6 52 19-88 51-102 (102)
264 cd02958 UAS UAS family; UAS is 68.2 18 0.00038 27.5 5.8 44 29-88 66-110 (114)
265 PRK10954 periplasmic protein d 67.9 8.1 0.00017 33.0 4.2 44 174-219 31-77 (207)
266 COG1651 DsbG Protein-disulfide 67.2 17 0.00036 31.6 6.2 45 168-214 73-117 (244)
267 PRK11657 dsbG disulfide isomer 66.5 13 0.00027 33.0 5.3 29 179-208 116-144 (251)
268 PRK09381 trxA thioredoxin; Pro 66.5 31 0.00067 25.6 6.9 53 18-87 53-106 (109)
269 PF11211 DUF2997: Protein of u 66.3 14 0.0003 24.2 4.1 31 55-87 2-32 (48)
270 KOG4277|consensus 65.9 2.5 5.3E-05 38.6 0.6 36 181-217 44-79 (468)
271 PRK10824 glutaredoxin-4; Provi 65.6 15 0.00032 28.7 4.9 27 178-205 12-42 (115)
272 cd02961 PDI_a_family Protein D 65.3 19 0.00041 25.5 5.3 52 17-84 48-100 (101)
273 cd02955 SSP411 TRX domain, SSP 63.8 34 0.00075 26.8 6.8 36 53-88 82-121 (124)
274 TIGR02181 GRX_bact Glutaredoxi 62.9 17 0.00037 25.4 4.5 41 187-234 3-44 (79)
275 cd02963 TRX_DnaJ TRX domain, D 62.1 39 0.00084 25.5 6.7 54 18-88 57-111 (111)
276 cd03065 PDI_b_Calsequestrin_N 61.6 22 0.00047 27.9 5.2 53 18-88 65-118 (120)
277 KOG0541|consensus 61.4 5 0.00011 33.1 1.6 51 21-73 106-156 (171)
278 PF03190 Thioredox_DsbH: Prote 61.3 41 0.00089 27.9 7.0 69 179-254 36-114 (163)
279 cd02953 DsbDgamma DsbD gamma f 59.9 15 0.00032 27.2 3.9 42 28-85 61-103 (104)
280 cd02972 DsbA_family DsbA famil 59.6 15 0.00032 25.9 3.8 35 185-221 2-36 (98)
281 PF03544 TonB_C: Gram-negative 59.2 14 0.0003 25.8 3.5 39 51-89 17-56 (79)
282 PRK10606 btuE putative glutath 59.0 19 0.0004 30.4 4.7 33 54-88 148-180 (183)
283 COG5257 GCD11 Translation init 58.7 5.1 0.00011 37.1 1.3 55 102-159 246-300 (415)
284 PF03190 Thioredox_DsbH: Prote 58.4 45 0.00099 27.7 6.8 67 21-91 74-146 (163)
285 PF02630 SCO1-SenC: SCO1/SenC; 57.8 8.9 0.00019 31.9 2.6 43 28-70 127-173 (174)
286 KOG0911|consensus 57.5 4.9 0.00011 35.0 0.9 42 179-223 16-57 (227)
287 PRK11509 hydrogenase-1 operon 57.4 33 0.00072 27.4 5.6 54 19-89 70-124 (132)
288 PF13192 Thioredoxin_3: Thiore 56.5 43 0.00093 23.4 5.7 30 190-222 7-36 (76)
289 PF00661 Matrix: Viral matrix 56.4 15 0.00032 34.3 4.0 71 17-91 16-111 (348)
290 PRK10996 thioredoxin 2; Provis 55.9 57 0.0012 25.8 6.9 47 25-88 92-138 (139)
291 cd02975 PfPDO_like_N Pyrococcu 55.2 32 0.0007 26.2 5.2 32 18-61 53-85 (113)
292 PF13728 TraF: F plasmid trans 54.8 45 0.00097 28.8 6.5 40 28-83 172-212 (215)
293 TIGR01068 thioredoxin thioredo 54.1 76 0.0016 22.5 7.0 53 18-87 46-99 (101)
294 PRK00293 dipZ thiol:disulfide 52.6 22 0.00048 35.5 4.8 47 29-89 524-570 (571)
295 cd02985 TRX_CDSP32 TRX family, 52.0 49 0.0011 24.5 5.7 39 30-86 62-100 (103)
296 PF06053 DUF929: Domain of unk 45.4 29 0.00062 30.9 3.8 33 179-212 57-89 (249)
297 TIGR01126 pdi_dom protein disu 45.3 58 0.0013 23.3 5.1 46 25-87 55-100 (102)
298 PF04278 Tic22: Tic22-like fam 45.2 42 0.00091 30.3 5.0 84 157-251 73-160 (274)
299 PRK10819 transport protein Ton 45.0 39 0.00084 30.0 4.6 39 51-90 182-222 (246)
300 cd02977 ArsC_family Arsenate R 44.1 54 0.0012 24.5 4.8 42 187-235 3-48 (105)
301 cd03002 PDI_a_MPD1_like PDI fa 43.9 42 0.00091 24.7 4.2 46 28-85 63-108 (109)
302 PRK01655 spxA transcriptional 43.1 58 0.0013 25.7 5.0 44 185-235 2-49 (131)
303 TIGR00995 3a0901s06TIC22 chlor 43.1 1.1E+02 0.0023 27.6 7.1 76 157-251 80-160 (270)
304 cd03036 ArsC_like Arsenate Red 42.7 47 0.001 25.3 4.3 42 187-235 3-48 (111)
305 PRK12759 bifunctional gluaredo 42.7 47 0.001 31.7 5.2 41 187-234 6-46 (410)
306 cd02994 PDI_a_TMX PDIa family, 42.7 78 0.0017 22.9 5.4 51 18-86 49-100 (101)
307 PTZ00062 glutaredoxin; Provisi 42.5 69 0.0015 27.5 5.7 40 177-223 109-151 (204)
308 COG3322 Predicted periplasmic 41.8 33 0.00071 31.3 3.7 33 54-86 106-141 (295)
309 KOG1651|consensus 41.6 36 0.00077 28.4 3.6 19 54-73 138-156 (171)
310 smart00775 LNS2 LNS2 domain. T 41.1 35 0.00077 27.8 3.6 50 3-66 107-156 (157)
311 KOG1752|consensus 41.0 56 0.0012 25.0 4.4 22 179-203 12-33 (104)
312 cd02979 PHOX_C FAD-dependent P 40.9 84 0.0018 25.9 5.8 52 156-210 1-55 (167)
313 smart00594 UAS UAS domain. 40.7 73 0.0016 24.5 5.2 47 27-85 74-121 (122)
314 cd03035 ArsC_Yffb Arsenate Red 40.6 64 0.0014 24.4 4.7 42 187-235 3-48 (105)
315 PF00571 CBS: CBS domain CBS d 40.6 42 0.00092 21.4 3.3 48 20-85 8-55 (57)
316 TIGR03759 conj_TIGR03759 integ 40.0 61 0.0013 27.8 4.8 49 181-235 109-158 (200)
317 COG0810 TonB Periplasmic prote 40.0 56 0.0012 28.7 4.9 39 51-89 181-220 (244)
318 PF13778 DUF4174: Domain of un 39.9 34 0.00073 26.6 3.1 47 177-223 5-52 (118)
319 COG0386 BtuE Glutathione perox 39.7 44 0.00095 27.6 3.8 31 54-88 129-159 (162)
320 PF01106 NifU: NifU-like domai 38.2 59 0.0013 22.7 3.8 35 168-205 15-49 (68)
321 PRK12559 transcriptional regul 36.9 98 0.0021 24.4 5.4 44 185-235 2-49 (131)
322 KOG0914|consensus 36.8 22 0.00048 31.1 1.7 36 181-217 145-180 (265)
323 PF02114 Phosducin: Phosducin; 36.4 94 0.002 27.8 5.8 42 179-223 145-186 (265)
324 PF13103 TonB_2: TonB C termin 36.4 47 0.001 23.5 3.3 38 51-88 27-65 (85)
325 cd02965 HyaE HyaE family; HyaE 36.3 1.2E+02 0.0026 23.4 5.6 41 18-71 61-102 (111)
326 KOG0913|consensus 36.1 8.1 0.00018 34.0 -1.0 40 177-218 37-76 (248)
327 cd03032 ArsC_Spx Arsenate Redu 35.0 93 0.002 23.7 4.9 43 186-235 3-49 (115)
328 PF05768 DUF836: Glutaredoxin- 34.8 23 0.00051 25.3 1.4 54 185-250 2-55 (81)
329 PRK12359 flavodoxin FldB; Prov 32.8 1.4E+02 0.0029 24.9 5.8 44 177-221 76-119 (172)
330 PF11453 DUF2950: Protein of u 32.7 40 0.00087 30.2 2.7 31 54-89 233-263 (271)
331 PF11720 Inhibitor_I78: Peptid 32.5 48 0.001 22.5 2.6 36 32-68 23-58 (60)
332 PF07894 DUF1669: Protein of u 31.7 2.3E+02 0.0051 25.7 7.5 126 111-252 48-184 (284)
333 TIGR02922 conserved hypothetic 31.7 58 0.0012 22.5 2.7 32 78-109 17-48 (67)
334 PF00803 3A: 3A/RNA2 movement 31.7 57 0.0012 28.7 3.5 33 164-198 109-141 (234)
335 TIGR01617 arsC_related transcr 31.6 99 0.0021 23.6 4.6 41 188-235 4-48 (117)
336 PF02563 Poly_export: Polysacc 31.2 20 0.00044 25.8 0.5 34 54-87 31-65 (82)
337 cd06006 R3H_unknown_2 R3H doma 30.2 44 0.00096 22.8 2.0 37 17-58 18-58 (59)
338 cd03060 GST_N_Omega_like GST_N 29.7 82 0.0018 21.3 3.5 52 188-251 4-55 (71)
339 PF01217 Clat_adaptor_s: Clath 28.8 97 0.0021 24.5 4.2 37 52-88 2-38 (141)
340 cd08351 ChaP_like ChaP, an enz 28.0 69 0.0015 24.1 3.1 20 52-71 103-122 (123)
341 PF00702 Hydrolase: haloacid d 27.9 1.5E+02 0.0033 24.3 5.5 35 201-235 130-164 (215)
342 KOG3559|consensus 27.7 1.3E+02 0.0028 28.8 5.2 110 54-166 91-219 (598)
343 PF01323 DSBA: DSBA-like thior 26.8 1.1E+02 0.0023 25.0 4.3 41 184-225 2-42 (193)
344 PF08821 CGGC: CGGC domain; I 26.3 1.1E+02 0.0023 23.5 3.8 44 173-222 29-73 (107)
345 cd08357 Glo_EDI_BRP_like_18 Th 26.1 75 0.0016 23.5 3.0 19 52-70 107-125 (125)
346 cd09011 Glo_EDI_BRP_like_23 Th 25.9 78 0.0017 23.6 3.0 18 52-69 101-118 (120)
347 PF08448 PAS_4: PAS fold; Int 25.7 59 0.0013 23.1 2.3 16 54-69 7-22 (110)
348 PF10813 DUF2733: Protein of u 25.5 42 0.0009 20.0 1.1 18 162-179 13-30 (32)
349 cd07253 Glo_EDI_BRP_like_2 Thi 25.3 77 0.0017 23.2 2.9 19 52-70 107-125 (125)
350 PRK08294 phenol 2-monooxygenas 24.8 1E+02 0.0023 31.1 4.5 56 152-207 462-520 (634)
351 PF04134 DUF393: Protein of un 24.2 1E+02 0.0022 23.1 3.5 30 187-220 2-31 (114)
352 PF05228 CHASE4: CHASE4 domain 24.1 1.4E+02 0.003 23.6 4.4 36 54-89 52-92 (161)
353 COG1707 ACT domain-containing 24.0 61 0.0013 27.2 2.2 63 47-111 27-89 (218)
354 PF03193 DUF258: Protein of un 23.9 2.2E+02 0.0048 23.5 5.5 44 204-253 2-45 (161)
355 PRK06184 hypothetical protein; 22.9 72 0.0016 30.9 2.9 36 153-188 386-422 (502)
356 PLN00115 pollen allergen group 22.9 39 0.00085 26.5 0.8 12 96-107 100-111 (118)
357 PF00989 PAS: PAS fold; Inter 22.6 73 0.0016 22.7 2.3 17 53-69 12-28 (113)
358 PRK13344 spxA transcriptional 22.6 2.1E+02 0.0046 22.5 5.1 43 186-235 3-49 (132)
359 COG2999 GrxB Glutaredoxin 2 [P 22.1 68 0.0015 27.2 2.1 50 191-253 7-56 (215)
360 cd01427 HAD_like Haloacid deha 22.1 1.6E+02 0.0035 21.6 4.2 38 198-235 24-61 (139)
361 COG4545 Glutaredoxin-related p 21.8 88 0.0019 22.6 2.3 21 185-206 5-25 (85)
362 PRK06183 mhpA 3-(3-hydroxyphen 21.8 5.5E+02 0.012 25.0 8.9 63 152-221 410-472 (538)
363 cd05017 SIS_PGI_PMI_1 The memb 21.7 2.2E+02 0.0047 21.6 4.9 43 201-250 57-99 (119)
364 COG0694 Thioredoxin-like prote 21.7 2.2E+02 0.0048 21.3 4.6 36 167-205 28-65 (93)
365 cd08355 Glo_EDI_BRP_like_14 Th 21.6 98 0.0021 23.0 2.9 19 52-70 104-122 (122)
366 PLN00410 U5 snRNP protein, DIM 21.5 3.4E+02 0.0073 21.9 6.0 66 25-102 63-136 (142)
367 PRK04011 peptide chain release 21.4 1.4E+02 0.0031 28.5 4.5 36 191-226 351-392 (411)
368 PF11009 DUF2847: Protein of u 21.0 3.9E+02 0.0084 20.4 6.1 54 180-235 19-73 (105)
369 cd03041 GST_N_2GST_N GST_N fam 20.9 2.3E+02 0.0051 19.4 4.5 54 187-251 4-57 (77)
370 TIGR01662 HAD-SF-IIIA HAD-supe 20.8 2.4E+02 0.0053 21.4 5.1 35 201-235 28-70 (132)
371 PF13426 PAS_9: PAS domain; PD 20.8 85 0.0018 21.9 2.3 16 54-69 3-18 (104)
372 PF12681 Glyoxalase_2: Glyoxal 20.7 99 0.0021 22.2 2.7 16 52-67 92-107 (108)
373 PF04486 SchA_CurD: SchA/CurD 20.4 2.1E+02 0.0046 22.3 4.4 63 17-85 4-67 (114)
374 PF03749 SfsA: Sugar fermentat 20.4 1.7E+02 0.0036 25.4 4.3 49 155-209 101-155 (215)
375 cd01450 vWFA_subfamily_ECM Von 20.3 4E+02 0.0087 20.4 6.4 39 182-224 104-142 (161)
376 TIGR03027 pepcterm_export puta 20.2 1.1E+02 0.0023 25.1 3.0 34 54-87 21-55 (165)
No 1
>KOG0854|consensus
Probab=100.00 E-value=1e-36 Score=247.98 Aligned_cols=122 Identities=56% Similarity=0.906 Sum_probs=114.3
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|++||++++.. +.+.++||||+|+++++|-.|||+++.+....|++.|+|++||||||.+||+++.||.++|||++|
T Consensus 82 ~Wi~DIks~~~~--~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dE 159 (224)
T KOG0854|consen 82 DWIKDIKSYAKV--KNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDE 159 (224)
T ss_pred HHHHHHHHHHhc--cCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHH
Confidence 499999998752 234599999999999999999999998887778888999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT 124 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~ 124 (276)
|||+|++||++++++++||+||+||++|||+|++++|||++.|+
T Consensus 160 iLRvidsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp 203 (224)
T KOG0854|consen 160 ILRVIDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFP 203 (224)
T ss_pred HHHHHHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcc
Confidence 99999999999999999999999999999999999999999985
No 2
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=239.83 Aligned_cols=111 Identities=34% Similarity=0.566 Sum_probs=103.3
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
||.++|++..| +.+++||||+|++++||++|||++++. |. +.|++|||||+|+||++.+|+.++|||++|
T Consensus 83 aW~~~~~~~~g----i~~i~~PmiaD~~~~vs~~ygvl~~~~----g~--a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE 152 (194)
T COG0450 83 AWKATIREAGG----IGKIKFPMIADPKGEIARAYGVLHPEE----GL--ALRGTFIIDPDGVIRHILVNPLTIGRNVDE 152 (194)
T ss_pred HHHhcHHhcCC----ccceecceEEcCchhHHHHcCCcccCC----Cc--ceeEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence 69999999988 367999999999999999999999875 55 689999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhc
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEG 121 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~ 121 (276)
+||+|+|||++++|+++|||||++|+++|+||+.+.+.+++
T Consensus 153 ilR~idAlq~~~~hg~vcPanW~~G~~~i~p~~~~~~~~~~ 193 (194)
T COG0450 153 ILRVIDALQFVAKHGEVCPANWKPGDKTIKPSPDLGEYLKE 193 (194)
T ss_pred HHHHHHHHHHHHHhCCCccCCCCCCCccccCCccchhhhhc
Confidence 99999999999999999999999999999999988666654
No 3
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.98 E-value=4e-32 Score=235.51 Aligned_cols=124 Identities=33% Similarity=0.508 Sum_probs=112.7
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|.++|++..+ .+++||||+|++++++++|||+++.. |. .+.|+||||||+|+||+++.||..+|||++|
T Consensus 78 ~w~~~i~~~~~-----~~i~fPil~D~~~~va~~yg~~~~~~----~~-~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e 147 (215)
T PRK13599 78 KWVEWIKDNTN-----IAIPFPVIADDLGKVSNQLGMIHPGK----GT-NTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE 147 (215)
T ss_pred HHHHhHHHhcC-----CCCceeEEECCCchHHHHcCCCccCC----CC-ceeeEEEEECCCCEEEEEEEcCCCCCCCHHH
Confidence 48888988666 78999999999999999999987653 22 2689999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCC----CCceeeCCCCCchhhhccCC--------CCCceeeeee
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKV----GMEIEVRPGLVSKDSEGKLT--------CKPIFSRIVS 134 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~----g~~~~~~p~~~~~~~~~~~~--------~~~w~~~~~~ 134 (276)
|||+|++||.+++++++|||||+| ||+|||+|+++.+||+++|+ +..||+|.+.
T Consensus 148 ilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 213 (215)
T PRK13599 148 ILRALKALQTADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANERKEKIKSKEIEAFDWWFVHKP 213 (215)
T ss_pred HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHhccccccCCcccccceEEeee
Confidence 999999999999999999999999 99999999999999998875 5789999765
No 4
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=2e-31 Score=229.49 Aligned_cols=124 Identities=52% Similarity=0.895 Sum_probs=112.4
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|+++|++..+ .+++||+|+|++++++++|||+.+.. +.+.+.|++|||||+|+|++++.||++.|||++|
T Consensus 75 ~~~~~i~~~~~-----~~~~fpil~D~~~~ia~~yg~~~~~~----~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~e 145 (203)
T cd03016 75 KWIEDIEEYTG-----VEIPFPIIADPDREVAKLLGMIDPDA----GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDE 145 (203)
T ss_pred HHHhhHHHhcC-----CCCceeEEECchHHHHHHcCCccccC----CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 48888888766 67999999999999999999987542 3445789999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC----CCCCceeeee
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL----TCKPIFSRIV 133 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~----~~~~w~~~~~ 133 (276)
++|+|++||.+++++++|||||++||+||++|+++.++|++++ .+..||+|.+
T Consensus 146 ll~~l~~lq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd03016 146 ILRVVDALQLTDKHKVATPANWKPGDDVIVPPSVSDEEAKKKFPKGYETVDWYLRFT 202 (203)
T ss_pred HHHHHHHHhhHhhcCcCcCCCCCCCCceecCCCCCHHHHHHhccCCCCcCcceEEeC
Confidence 9999999999999999999999999999999999999998775 4788999864
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=3e-30 Score=223.81 Aligned_cols=125 Identities=34% Similarity=0.499 Sum_probs=112.6
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|.+++++..| .+++||||+|++++++++|||+.+.. .+ .+.|++|||||+|+||+++.|++++|||++|
T Consensus 83 aw~~~~~~~~~-----~~i~fPllsD~~~~ia~~ygv~~~~~---~~--~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e 152 (215)
T PRK13191 83 EWVMWIEKNLK-----VEVPFPIIADPMGNVAKRLGMIHAES---ST--ATVRAVFIVDDKGTVRLILYYPMEIGRNIDE 152 (215)
T ss_pred HHHhhHHHhcC-----CCCceEEEECCchHHHHHcCCccccc---CC--ceeEEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 48888887666 68999999999999999999987542 12 2689999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCC----CCceeeCCCCCchhhhccCC-CCCceeeeeec
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKV----GMEIEVRPGLVSKDSEGKLT-CKPIFSRIVSL 135 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~----g~~~~~~p~~~~~~~~~~~~-~~~w~~~~~~~ 135 (276)
+||+|++||.+++++++|||||+| |+++|++|+.+.++|+++|+ +..||+|.+..
T Consensus 153 ilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 212 (215)
T PRK13191 153 ILRAIRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKDAKMRLGQPFDWWFTYKEV 212 (215)
T ss_pred HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCCCCCHHHHHHhcccCCCCceEcccC
Confidence 999999999999999999999997 99999999999999999984 47899997654
No 6
>PRK13189 peroxiredoxin; Provisional
Probab=99.96 E-value=1.6e-29 Score=220.37 Aligned_cols=124 Identities=35% Similarity=0.591 Sum_probs=111.6
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|++++++..| .+++||||+|++++++++|||+.+... +. +.|++|||||+|+||+++.|++..|||++|
T Consensus 85 aw~~~~~~~~g-----~~i~fPllsD~~~~ia~~ygv~~~~~~---~~--~~r~tfIID~~G~Ir~~~~~~~~~gr~~~e 154 (222)
T PRK13189 85 KWVEWIKEKLG-----VEIEFPIIADDRGEIAKKLGMISPGKG---TN--TVRAVFIIDPKGIIRAILYYPQEVGRNMDE 154 (222)
T ss_pred HHHHhHHHhcC-----cCcceeEEEcCccHHHHHhCCCccccC---CC--ceeEEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 58888887666 679999999999999999999865421 12 689999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCC----ceeeCCCCCchhhhccCC--------CCCceeeeee
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGM----EIEVRPGLVSKDSEGKLT--------CKPIFSRIVS 134 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~----~~~~~p~~~~~~~~~~~~--------~~~w~~~~~~ 134 (276)
+||+|++||.+++++++|||||+||+ ++|++|+.+.++|+++|+ +..||+|.+.
T Consensus 155 ilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 220 (222)
T PRK13189 155 ILRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPPASSVEEAKKRLEAKEKGEYECYDWWFCYKK 220 (222)
T ss_pred HHHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCCCCCHHHHHHhhcccccCCcccccceeEeee
Confidence 99999999999999999999999999 999999999999988863 6889998764
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.96 E-value=2.6e-29 Score=216.16 Aligned_cols=122 Identities=39% Similarity=0.648 Sum_probs=110.2
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|++++.+..| .+++||+|+|++++++++|||+.+.. |. +.|++|||||+|+|+++..|+..+|||++|
T Consensus 77 ~w~~~~~~~~g-----~~~~fPll~D~~~~ia~~ygv~~~~~----g~--~~p~~fiId~~G~I~~~~~~~~~~gr~~~e 145 (202)
T PRK13190 77 AWLRDIEERFG-----IKIPFPVIADIDKELAREYNLIDENS----GA--TVRGVFIIDPNQIVRWMIYYPAETGRNIDE 145 (202)
T ss_pred HHHHhHHHhcC-----CCceEEEEECCChHHHHHcCCccccC----Cc--EEeEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 48888887766 56899999999999999999986543 43 579999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCC---CCCceeeee
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLT---CKPIFSRIV 133 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~---~~~w~~~~~ 133 (276)
++|+|++||.+++++++|||||+||+++|++|+.+.++|+++|+ +..||+|..
T Consensus 146 llr~l~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T PRK13190 146 IIRITKALQVNWKRKVATPANWQPGQEGIVPAPSTLDEAEMRIKEPGAKTWYLKFK 201 (202)
T ss_pred HHHHHHHhhhHHhcCCCcCCCCCcCCceecCCCCCHHHHHHHhcCCCCCCceeEec
Confidence 99999999999999999999999999999999999999988863 678888753
No 8
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=195.09 Aligned_cols=110 Identities=27% Similarity=0.308 Sum_probs=103.3
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
.+.+|++||||+|++.+|+.++|+ +|+||+|||+|||.++||.|+.|++.|++.+++|++.|++|+|||+|++.+|++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Ls-d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLS-DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehH-HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 457999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172 232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY 271 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~ 271 (276)
++++ +++|++|||.++. ++++||+..+...+
T Consensus 82 ~~k~------~L~f~LLSD~~~~---v~~~ygv~~~k~~~ 112 (157)
T COG1225 82 AEKH------GLTFPLLSDEDGE---VAEAYGVWGEKKMY 112 (157)
T ss_pred HHHh------CCCceeeECCcHH---HHHHhCcccccccC
Confidence 9999 9999999997765 78999998876543
No 9
>KOG0852|consensus
Probab=99.93 E-value=1.8e-26 Score=188.15 Aligned_cols=101 Identities=29% Similarity=0.520 Sum_probs=95.2
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
||++..++.+| ...+++|||||.+++||+.|||++++. |+ +.|.+||||++|++|.+..+.+.+||+++|
T Consensus 83 AW~ntprk~gG----lg~~~iPllsD~~~~IsrdyGvL~~~~----G~--~lRglfIId~~gi~R~it~NDlpvgRSVdE 152 (196)
T KOG0852|consen 83 AWINTPRKQGG----LGPLNIPLLSDLNHEISRDYGVLKEDE----GI--ALRGLFIIDPDGILRQITINDLPVGRSVDE 152 (196)
T ss_pred hHhcCchhhCC----cCccccceeeccchhhHHhcCceecCC----Cc--ceeeeEEEccccceEEeeecccCCCccHHH
Confidence 79999999988 377999999999999999999999876 77 469999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeC
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVR 111 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~ 111 (276)
+||.|+|.|.+++|+.+|||||+||.+.|.|
T Consensus 153 ~lRLvqAfQ~td~~geVcPagW~pgs~tikp 183 (196)
T KOG0852|consen 153 TLRLVQAFQFTDEHGEVCPAGWKPGSDTIKP 183 (196)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCcccCC
Confidence 9999999999999999999999999999754
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.92 E-value=2e-25 Score=197.84 Aligned_cols=96 Identities=27% Similarity=0.499 Sum_probs=89.6
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV 96 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~ 96 (276)
.+++||||+|++++++++||++.+. |. +.|++|||||+|+|++++.|++.+|||++|+||+|++||.++++++
T Consensus 160 ~~l~fPlLsD~~~~iakayGv~~~~-----g~--a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~ 232 (261)
T PTZ00137 160 SPLKFPLFSDISREVSKSFGLLRDE-----GF--SHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGN 232 (261)
T ss_pred cCcceEEEEcCChHHHHHcCCCCcC-----Cc--eecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCC
Confidence 6799999999999999999998642 44 6799999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCceeeCCCCCchhh
Q psy1172 97 ATPVDWKVGMEIEVRPGLVSKDS 119 (276)
Q Consensus 97 ~~p~~w~~g~~~~~~p~~~~~~~ 119 (276)
+|||||+||+++|++++.+.++-
T Consensus 233 ~cPanW~~g~~~~~~~~~~~~~~ 255 (261)
T PTZ00137 233 VCPVNWKQGDQAMKPDSQSVKQY 255 (261)
T ss_pred CcCCCCCcCCceecCCcccHHHH
Confidence 99999999999999998887775
No 11
>PRK15000 peroxidase; Provisional
Probab=99.92 E-value=2.1e-25 Score=191.52 Aligned_cols=101 Identities=28% Similarity=0.473 Sum_probs=90.8
Q ss_pred CchhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 1 MFLQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 1 ~w~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+|.+++++..| +.+++||+++|++++++++|||+.+.. |+ +.|++|||||+|+|++++.+++.+|||++|
T Consensus 84 ~w~~~~~~~~g----~~~i~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfiID~~G~I~~~~~~~~~~gr~~~e 153 (200)
T PRK15000 84 AWRNTPVDKGG----IGPVKYAMVADVKREIQKAYGIEHPDE----GV--ALRGSFLIDANGIVRHQVVNDLPLGRNIDE 153 (200)
T ss_pred HHHhhHHHhCC----ccccCceEEECCCcHHHHHcCCccCCC----Cc--EEeEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 47777777666 246899999999999999999987653 54 579999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCcCCCCCCCCceeeC
Q psy1172 81 ILRVLDSLQLTDTKKVATPVDWKVGMEIEVR 111 (276)
Q Consensus 81 ilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~ 111 (276)
+||+|++||++++++++|||||+||+++|.+
T Consensus 154 ilr~l~al~~~~~~~~~~p~~w~~g~~~~~~ 184 (200)
T PRK15000 154 MLRMVDALQFHEEHGDVCPAQWEKGKEGMNA 184 (200)
T ss_pred HHHHHHHhhhHHhcCCCcCCCCCCCCceecc
Confidence 9999999999999999999999999999855
No 12
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.90 E-value=6.3e-24 Score=180.40 Aligned_cols=90 Identities=23% Similarity=0.432 Sum_probs=82.2
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K 95 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~ 95 (276)
.+++||||+|++++++++||++.+.. |+ +.|+||||||+|+|++++.++..++||++|+||.|++||+.++| +
T Consensus 90 ~~l~fpllsD~~~~ia~~ygv~~~~~----g~--~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g 163 (187)
T PRK10382 90 AKIKYAMIGDPTGALTRNFDNMREDE----GL--ADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG 163 (187)
T ss_pred cCCceeEEEcCchHHHHHcCCCcccC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCC
Confidence 46999999999999999999986543 44 57999999999999999999999999999999999999999999 6
Q ss_pred CCcCCCCCCCCceeeCC
Q psy1172 96 VATPVDWKVGMEIEVRP 112 (276)
Q Consensus 96 ~~~p~~w~~g~~~~~~p 112 (276)
++||+||++|+++|.+-
T Consensus 164 ~~~p~~w~~~~~~~~~~ 180 (187)
T PRK10382 164 EVCPAKWKEGEATLAPS 180 (187)
T ss_pred eEeCCCCCcCCcceecC
Confidence 99999999999998553
No 13
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=174.41 Aligned_cols=121 Identities=26% Similarity=0.393 Sum_probs=108.6
Q ss_pred cccccCCCCCcEEecC-CCC---eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172 152 DRFAAALLPGCSLLGC-QAS---LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES 227 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~-~G~---~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~ 227 (276)
.+.+|+++|+|+++.. .|+ +++++ ++.|||+||+|||++++|.|..|+..|++.|++|+++|++||+||+|+.++
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~-d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fs 80 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLS-DYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFS 80 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEech-hhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHH
Confidence 3568999999999998 775 89999 666799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCC-eeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172 228 HHDWIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV 276 (276)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v 276 (276)
|.+|.+..+++.+++ ++||+++|.+++ ++++||+..+..| ++|+||
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~---vs~~ygvl~~~~g~a~R~~FI 129 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGE---IARAYGVLHPEEGLALRGTFI 129 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCchh---HHHHcCCcccCCCcceeEEEE
Confidence 999999988887776 899999997664 7999999986655 568775
No 14
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=3.4e-23 Score=179.70 Aligned_cols=121 Identities=24% Similarity=0.412 Sum_probs=102.7
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
.+.+|+++|+|++++.+|+ +++.++++||++||+|||++|||+|..|++.|++++++|+++|++|++||+|+..+|++|
T Consensus 6 ~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEW 84 (215)
T ss_pred cccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
Confidence 4579999999999999986 566547899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC---CcccccC
Q psy1172 232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY---GYLGTYV 276 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~---~~lg~~v 276 (276)
.+..++..+++++||+++|.++ +++++||+..+.. ...++||
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~~---~ia~~ygv~~~~~~~~~~r~tfI 129 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPMG---NVAKRLGMIHAESSTATVRAVFI 129 (215)
T ss_pred HhhHHHhcCCCCceEEEECCch---HHHHHcCCcccccCCceeEEEEE
Confidence 9877654445788999999764 4789999976432 2345553
No 15
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.89 E-value=5.1e-23 Score=177.11 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=102.0
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|+.+|+|++++..| .++|+ +++||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+.+++++|.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~-d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLS-KYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHH-HhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 46899999999999887 68998 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172 233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV 276 (276)
Q Consensus 233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v 276 (276)
+.+.++.++.++||+++|.++ +++++||+..+..+ +.++||
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~---~ia~~ygv~~~~~g~~~p~~fi 122 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDK---ELAREYNLIDENSGATVRGVFI 122 (202)
T ss_pred HhHHHhcCCCceEEEEECCCh---HHHHHcCCccccCCcEEeEEEE
Confidence 887655444568999999765 47899999755443 345553
No 16
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.89 E-value=4.8e-23 Score=170.16 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=96.1
Q ss_pred ccCCCCCcEEecCC---CCeEEecccCCCCeEEEEEEcCCCCcccHHH-HHHHHHHHHHHHhCCc-EEEEEeCCChHHHH
Q psy1172 155 AAALLPGCSLLGCQ---ASLVILECSIPAFWGILFSHPSDFTPVCTTE-LARVLQLIKEFEQRTC-KVIALSCDSVESHH 229 (276)
Q Consensus 155 ~G~~aPdF~L~~~~---G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-l~~l~~~~~~~~~~gv-~Vv~VS~D~~~~~~ 229 (276)
+|+++|+|+|++.+ |+.++|++.++||++||+|||++|||.|..| ++.|++.+++|+++|+ +|++||.|++++++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 8999999337999999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHHHhcccCCe--eEEEeeCCcchhhhhhhhcccccccC
Q psy1172 230 DWIKALVRDCILGL--LINLSVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 230 ~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
+|++++ ++ +|++++|.++ +++++||+..+..
T Consensus 81 ~~~~~~------~~~~~f~lLsD~~~---~~~~~ygv~~~~~ 113 (155)
T cd03013 81 AWGKAL------GAKDKIRFLADGNG---EFTKALGLTLDLS 113 (155)
T ss_pred HHHHhh------CCCCcEEEEECCCH---HHHHHcCCCcccc
Confidence 999999 65 7999999764 4799999986643
No 17
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.89 E-value=8.5e-23 Score=177.16 Aligned_cols=111 Identities=27% Similarity=0.482 Sum_probs=98.2
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|+++|+|++++++|+...++ +++||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+.+++++|.
T Consensus 2 ~~~Gd~aPdF~l~t~~G~~~~~~-~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 2 KLLGEKFPSMEVVTTQGVKRLPE-DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCCEeECCCCcEecHH-HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 36899999999999999877766 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+..++..+.+++||+++|.++. ++++||+..+
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~---va~~yg~~~~ 112 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGK---VSNQLGMIHP 112 (215)
T ss_pred HhHHHhcCCCCceeEEECCCch---HHHHcCCCcc
Confidence 8776543447799999997654 6889998654
No 18
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.89 E-value=7.3e-23 Score=174.07 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=97.7
Q ss_pred cccCCCCCcEEec-CCCC--eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 154 FAAALLPGCSLLG-CQAS--LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 154 ~~G~~aPdF~L~~-~~G~--~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
.+|+++|+|++++ .+|+ .++++ +|+||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+++.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~-d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDE-DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHH-HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 4799999999998 5776 57777 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--cccc
Q psy1172 231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTY 275 (276)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~ 275 (276)
|.+...... +++||+++|.++ +++++||+..+..++ ..+|
T Consensus 82 ~~~~~~~~~--~l~fpllsD~~~---~~a~~~gv~~~~~g~~~p~tf 123 (187)
T TIGR03137 82 WHDTSEAIG--KITYPMLGDPTG---VLTRNFGVLIEEAGLADRGTF 123 (187)
T ss_pred HHhhhhhcc--CcceeEEECCcc---HHHHHhCCcccCCCceeeEEE
Confidence 987653222 568999999754 478999998654433 3444
No 19
>PRK13189 peroxiredoxin; Provisional
Probab=99.89 E-value=9.8e-23 Score=177.68 Aligned_cols=120 Identities=24% Similarity=0.391 Sum_probs=102.7
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|+.+|+|++++++|+ +++++.++||++||+|||++|||+|..|++.|++++++|+++|++||+||+|+++++++|.
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999985 6777467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc---CCcccccC
Q psy1172 233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT---YGYLGTYV 276 (276)
Q Consensus 233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~---~~~lg~~v 276 (276)
+...+..+.+++||+++|.++ +++++||+.... ....++||
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~---~ia~~ygv~~~~~~~~~~r~tfI 131 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRG---EIAKKLGMISPGKGTNTVRAVFI 131 (222)
T ss_pred HhHHHhcCcCcceeEEEcCcc---HHHHHhCCCccccCCCceeEEEE
Confidence 987665555679999999765 478999987543 23456654
No 20
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.89 E-value=9.6e-23 Score=173.15 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=99.6
Q ss_pred cccCCCCCcEEecC-CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 154 FAAALLPGCSLLGC-QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 154 ~~G~~aPdF~L~~~-~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
.+|+++|+|+++.. +| ..++|+ +|+||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+++.+++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~-d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEK-DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHH-HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 58999999999985 44 356777 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172 231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV 276 (276)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v 276 (276)
|.+..... .+++||+++|+++ +++++||++.+..++ ..+||
T Consensus 82 ~~~~~~~~--~~l~fpllsD~~~---~ia~~ygv~~~~~g~~~r~tfI 124 (187)
T PRK10382 82 WHSSSETI--AKIKYAMIGDPTG---ALTRNFDNMREDEGLADRATFV 124 (187)
T ss_pred HHHhhccc--cCCceeEEEcCch---HHHHHcCCCcccCCceeeEEEE
Confidence 99875321 1678999999754 479999998665555 56554
No 21
>PRK15000 peroxidase; Provisional
Probab=99.88 E-value=1.7e-22 Score=173.49 Aligned_cols=120 Identities=20% Similarity=0.290 Sum_probs=98.8
Q ss_pred cccCCCCCcEEecCC--CCe---EEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172 154 FAAALLPGCSLLGCQ--ASL---VILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH 228 (276)
Q Consensus 154 ~~G~~aPdF~L~~~~--G~~---v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~ 228 (276)
.+|+++|+|++++.. |+. .+|++.++||++||+|||++|||+|+.|++.|++++++|+++|++||+||+|+++.+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 489999999999874 443 355533389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172 229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV 276 (276)
Q Consensus 229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v 276 (276)
++|.+...++.++ +++||+++|.++ +++++||+..+..+ +.++||
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~---~ia~~ygv~~~~~g~~~r~tfi 130 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKR---EIQKAYGIEHPDEGVALRGSFL 130 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCc---HHHHHcCCccCCCCcEEeEEEE
Confidence 9998876555443 468999999765 47899999865543 456654
No 22
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.87 E-value=3e-22 Score=171.86 Aligned_cols=92 Identities=32% Similarity=0.590 Sum_probs=84.3
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV 96 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~ 96 (276)
.+++||+|+|++++++++||++.+.. |+ +.|++|||||+|+||+++.++..+|||++|+||.|+++|..+++++
T Consensus 98 ~~~~fpll~D~~~~ia~~ygv~~~~~----g~--~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~~~~ 171 (199)
T PTZ00253 98 GTMAIPMLADKTKSIARSYGVLEEEQ----GV--AYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEKHGE 171 (199)
T ss_pred cccccceEECcHhHHHHHcCCcccCC----Cc--eEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHhcCC
Confidence 36999999999999999999987643 44 5799999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCceeeCCCC
Q psy1172 97 ATPVDWKVGMEIEVRPGL 114 (276)
Q Consensus 97 ~~p~~w~~g~~~~~~p~~ 114 (276)
.||+||+||+++|++++.
T Consensus 172 ~cp~~w~~g~~~~~~~~~ 189 (199)
T PTZ00253 172 VCPANWKKGDPTMKPDPN 189 (199)
T ss_pred EeCCCCCcCCccccCChH
Confidence 999999999999987653
No 23
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.86 E-value=1.4e-21 Score=173.36 Aligned_cols=113 Identities=28% Similarity=0.348 Sum_probs=95.9
Q ss_pred ccccccCCCCCcEEec-CCCC--eEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 151 IDRFAAALLPGCSLLG-CQAS--LVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 151 ~~~~~G~~aPdF~L~~-~~G~--~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
..+.+|+++|+|++++ .+|+ .++|+ ++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||+|+++
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLs-d~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSS-DYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPF 144 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHH-HHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 3457999999999988 4554 58998 55 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-cCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 227 SHHDWIKALVRDC-ILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
++++|.+...++. ..+++||+++|.++ +++++||+..+
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~---~iakayGv~~~ 183 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISR---EVSKSFGLLRD 183 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCCh---HHHHHcCCCCc
Confidence 9999988643321 12678999999754 47999998753
No 24
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.86 E-value=1.4e-21 Score=168.24 Aligned_cols=108 Identities=33% Similarity=0.505 Sum_probs=95.2
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHH
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~ 233 (276)
+|+.+|+|++++++| .++|+ +++| |++||+|||++|||.|+.|++.|++++++|+++|++|++||+|+.+++++|.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~-d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFH-DYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHH-HHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHh
Confidence 589999999999987 58998 7888 79999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 234 ALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 234 ~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
...+..+.+++||+++|+++ +++++||+...
T Consensus 79 ~i~~~~~~~~~fpil~D~~~---~ia~~yg~~~~ 109 (203)
T cd03016 79 DIEEYTGVEIPFPIIADPDR---EVAKLLGMIDP 109 (203)
T ss_pred hHHHhcCCCCceeEEECchH---HHHHHcCCccc
Confidence 86554334789999999764 47899998743
No 25
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.86 E-value=1.3e-21 Score=154.08 Aligned_cols=103 Identities=22% Similarity=0.363 Sum_probs=95.3
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
+|+++|+|++++.+|+.++|+ +++||++||+||+.+|||.|..+++.|++++++|+++|++|++||.|+++.+++|.+.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~-~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLS-DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHH-HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 699999999999999999999 8899999999998779999999999999999999999999999999999999999999
Q ss_pred HHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 235 LVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 235 ~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+ +++|++++|.++. .++.||+...
T Consensus 80 ~------~~~~~~~~D~~~~---~~~~~~~~~~ 103 (124)
T PF00578_consen 80 Y------GLPFPVLSDPDGE---LAKAFGIEDE 103 (124)
T ss_dssp H------TCSSEEEEETTSH---HHHHTTCEET
T ss_pred h------ccccccccCcchH---HHHHcCCccc
Confidence 9 7899999996654 6888888743
No 26
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.86 E-value=1.7e-21 Score=158.00 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=92.9
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
+|+.+|+|++++.+|+.++|+ +++||++||+|||+.|||+|+.|++.|+++++++ +|+.||+||+|+++.+++|.++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~-~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~~ 78 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLA-DFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCGA 78 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHH-HhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHHh
Confidence 699999999999999999999 7999999999998888999999999999999998 4899999999999999999998
Q ss_pred HHhcccCCe-eEEEeeCCcchhhhhhhhcccccccCC
Q psy1172 235 LVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTYG 270 (276)
Q Consensus 235 ~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~~ 270 (276)
+ +. .|++++|.. ..+++++||++.+..+
T Consensus 79 ~------~~~~~~~l~D~~--~~~~~~~~gv~~~~~~ 107 (143)
T cd03014 79 E------GVDNVTTLSDFR--DHSFGKAYGVLIKDLG 107 (143)
T ss_pred c------CCCCceEeecCc--ccHHHHHhCCeeccCC
Confidence 8 54 699999964 1356889999865444
No 27
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.86 E-value=1.7e-21 Score=167.22 Aligned_cols=120 Identities=27% Similarity=0.390 Sum_probs=99.7
Q ss_pred ccccCCCCCcEEec----CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHH
Q psy1172 153 RFAAALLPGCSLLG----CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH 228 (276)
Q Consensus 153 ~~~G~~aPdF~L~~----~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~ 228 (276)
+.+|+++|+|++++ .+|+.++|+ +|+||++||+|||++||+.|..|+++|++++++|+++|++||+||+|+.+++
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~-d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLS-SYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHH-HHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 56899999999765 456789999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC-CeeEEEeeCCcchhhhhhhhcccccccCC--cccccC
Q psy1172 229 HDWIKALVRDCIL-GLLINLSVDDFKEVEGRSRRFQESLNTYG--YLGTYV 276 (276)
Q Consensus 229 ~~~~~~~~~~~~~-~~~~~~l~D~~~~~~~~a~~ygv~~~~~~--~lg~~v 276 (276)
.+|.......++. +++||+++|.++ +++++||++....+ +.|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~---~ia~~ygv~~~~~g~~~r~~fi 132 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTK---SIARSYGVLEEEQGVAYRGLFI 132 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHh---HHHHHcCCcccCCCceEEEEEE
Confidence 9986544332222 368999999654 47899999765444 456664
No 28
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.86 E-value=3.1e-21 Score=161.88 Aligned_cols=110 Identities=25% Similarity=0.287 Sum_probs=95.1
Q ss_pred ccCCCCCcEEecCCC----CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 155 AAALLPGCSLLGCQA----SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G----~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
+|+++|+|++++.+| +.++|+ +++||++||+|||++|||+|..+++.|++++++|+++|++|++||+|+.+.+++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~-~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLS-DYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehH-HhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 689998 899999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhccc-CCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 231 WIKALVRDCI-LGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 231 ~~~~~~~~~~-~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
|.+...+..+ .+++|++++|.++ +++++||+....
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~---~~~~~~gv~~~~ 115 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKK---KISRDYGVLDEE 115 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCch---hHHHHhCCcccc
Confidence 8887643110 1578999999764 468889987554
No 29
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.85 E-value=3.7e-21 Score=156.72 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=96.7
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
+.+|+.+|+|++++.+|+.++++ +++| |++||+|||++|||.|..+++.|++++++|+++|++||+||.|+++.+++|
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~-~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~ 79 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLS-EFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAW 79 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHH-HHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHH
Confidence 35799999999999999999999 8999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
++++ +++|++++|.+.. .++++.||+....
T Consensus 80 ~~~~------~~~~~~~~D~~~~-~~~~~~~g~~~~~ 109 (149)
T cd03018 80 AEEN------GLTFPLLSDFWPH-GEVAKAYGVFDED 109 (149)
T ss_pred HHhc------CCCceEecCCCch-hHHHHHhCCcccc
Confidence 9888 7789999986511 3568889987554
No 30
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.85 E-value=4.6e-21 Score=160.14 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=93.2
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
.+.+|+.+|+|++++.+|+.++|+ +++||++||+|||+.|||+|+.|++.|++++++| .|++|++||.|+++.+++|
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~-~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLA-DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehH-HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 446899999999999999999999 8999999999997777999999999999999999 4899999999999999999
Q ss_pred HHHHHhcccCCee-EEEeeCCcchhhhhhhhccccccc
Q psy1172 232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
.+++ +++ +++++|..+ ..++++||+...+
T Consensus 94 ~~~~------~~~~~~~lsD~~~--~~~~~~~gv~~~~ 123 (167)
T PRK00522 94 CGAE------GLENVITLSDFRD--HSFGKAYGVAIAE 123 (167)
T ss_pred HHhC------CCCCceEeecCCc--cHHHHHhCCeecc
Confidence 9988 665 899998533 2468899997654
No 31
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.84 E-value=2.6e-20 Score=153.03 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=95.9
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|+.+|+|++++.+|+.++|+ +++||++||+||++.|||.|+.+++.|++++++++++|++||+||.|+++.+++|.
T Consensus 4 ~~~g~~~p~f~l~~~~G~~~~l~-~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~ 82 (154)
T PRK09437 4 LKAGDIAPKFSLPDQDGEQVSLT-DFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFA 82 (154)
T ss_pred CCCCCcCCCcEeeCCCCCEEeHH-HhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 46799999999999999999999 79999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 233 KALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 233 ~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+++ +++|++++|..+ .++++||+...
T Consensus 83 ~~~------~~~~~~l~D~~~---~~~~~~gv~~~ 108 (154)
T PRK09437 83 EKE------LLNFTLLSDEDH---QVAEQFGVWGE 108 (154)
T ss_pred HHh------CCCCeEEECCCc---hHHHHhCCCcc
Confidence 888 778999998654 46788998654
No 32
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.82 E-value=4.2e-20 Score=149.95 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=88.4
Q ss_pred CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHh
Q psy1172 158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237 (276)
Q Consensus 158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~ 237 (276)
.+|+|++++.+|+.+++++..+++++||+||+++|||+|+.|++.|++++++|+++|++||+||.|+.+.+.+|.+..
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~-- 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK-- 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc--
Confidence 489999999999999998334568999999999999999999999999999999999999999999988887788777
Q ss_pred cccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172 238 DCILGLLINLSVDDFKEVEGRSRRFQESL 266 (276)
Q Consensus 238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~ 266 (276)
+++||+++|++.. ++++||+..
T Consensus 79 ----~~~~p~~~D~~~~---~~~~~g~~~ 100 (149)
T cd02970 79 ----FLPFPVYADPDRK---LYRALGLVR 100 (149)
T ss_pred ----CCCCeEEECCchh---HHHHcCcee
Confidence 7899999997654 688899863
No 33
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.82 E-value=6.5e-20 Score=147.68 Aligned_cols=101 Identities=28% Similarity=0.291 Sum_probs=93.1
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHH
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALV 236 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~ 236 (276)
+++|+|++++.+|+.++++ +++||++||+||+++|||.|..+++.|++++++|+++|++||+||+|+++.+++|.+++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~- 78 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLS-DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY- 78 (140)
T ss_pred CCCCCccccCCCCCEEeHH-HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-
Confidence 4689999999999999999 89999999999999999999999999999999999999999999999999999999988
Q ss_pred hcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 237 RDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+++|++++|.+. +++++||+...
T Consensus 79 -----~~~~~~l~D~~~---~~~~~~gv~~~ 101 (140)
T cd03017 79 -----GLPFPLLSDPDG---KLAKAYGVWGE 101 (140)
T ss_pred -----CCCceEEECCcc---HHHHHhCCccc
Confidence 778999999765 46888998765
No 34
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.80 E-value=1.4e-19 Score=147.18 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=88.1
Q ss_pred cccCCCCCcEEec--CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 154 FAAALLPGCSLLG--CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 154 ~~G~~aPdF~L~~--~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
++|+++|+|++++ .+|+.++|+ +++||++||+||++.|||+|+.|+|.|++++++++++|+.+++|+.++.....+|
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~-~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLS-DFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGG-GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHH-HhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 4799999999966 999999999 6999999999995549999999999999999999999999999999876668888
Q ss_pred HHHHHhcccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172 232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQES 265 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~ 265 (276)
.+++ +.+|+++.|.++. ++++||+.
T Consensus 80 ~~~~------~~~~~~~~D~~~~---~~~~~~~~ 104 (146)
T PF08534_consen 80 LKKY------GINFPVLSDPDGA---LAKALGVT 104 (146)
T ss_dssp HHHT------TTTSEEEEETTSH---HHHHTTCE
T ss_pred HHhh------CCCceEEechHHH---HHHHhCCc
Confidence 8886 7789999996554 68888876
No 35
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.80 E-value=1.4e-19 Score=148.80 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHHHHH
Q psy1172 159 LPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVESHHD 230 (276)
Q Consensus 159 aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~~~~ 230 (276)
+|+|+|++.+|+.++|+ +++||++||+|| ++||| |+.|+|.|++++++|+++|++||+||.| +++.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~-~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLS-KYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHH-HhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 79999999999999999 899999999999 99999 9999999999999999999999999974 3577888
Q ss_pred HHHH-HHhcccCCeeEEEeeCCcchhhhhhhhccc
Q psy1172 231 WIKA-LVRDCILGLLINLSVDDFKEVEGRSRRFQE 264 (276)
Q Consensus 231 ~~~~-~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv 264 (276)
|+++ + +++||+++|.+......++.|++
T Consensus 79 f~~~~~------~~~fp~~~d~d~~~~~~~~~~~~ 107 (152)
T cd00340 79 FCETNY------GVTFPMFAKIDVNGENAHPLYKY 107 (152)
T ss_pred HHHHhc------CCCceeeeeEeccCCCCChHHHH
Confidence 8876 6 67899997743222123455664
No 36
>KOG0855|consensus
Probab=99.79 E-value=3.4e-19 Score=144.50 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=98.0
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
-+.+|+.+|||+|+|.||..++|. .+.|+ +|||+|||++-+|.|++|.+.|++.|++|+..+.+|+|+|.|+..++++
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLk-kit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKa 140 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLK-KITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKA 140 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeee-eecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHH
Confidence 457999999999999999999999 66664 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172 231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
|+.++ +++|.+|+|+.++ +-+.+|+..++.
T Consensus 141 F~sKq------nlPYhLLSDpk~e---~ik~lGa~k~p~ 170 (211)
T KOG0855|consen 141 FASKQ------NLPYHLLSDPKNE---VIKDLGAPKDPF 170 (211)
T ss_pred hhhhc------cCCeeeecCcchh---HHHHhCCCCCCC
Confidence 99999 8999999997665 566788876544
No 37
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.78 E-value=1.5e-18 Score=139.55 Aligned_cols=102 Identities=31% Similarity=0.459 Sum_probs=91.0
Q ss_pred CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHh
Q psy1172 158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVR 237 (276)
Q Consensus 158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~ 237 (276)
.+|+|++++.+|+.++++ +++||++||+||+++|||+|..+++.|++++++|++.++++|+||.|+++.+++|++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~-~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~- 78 (140)
T cd02971 1 KAPDFTLPATDGGEVSLS-DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEG- 78 (140)
T ss_pred CCCCceeccCCCcEEehH-HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhccc-
Confidence 479999999999999999 889999999999999999999999999999999998999999999999998888887762
Q ss_pred cccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 238 DCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
+.+|++++|.++ .++++||+....
T Consensus 79 ----~~~~~~l~D~~~---~~~~~~g~~~~~ 102 (140)
T cd02971 79 ----GLNFPLLSDPDG---EFAKAYGVLIEK 102 (140)
T ss_pred ----CCCceEEECCCh---HHHHHcCCcccc
Confidence 447999998765 468889887554
No 38
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.77 E-value=1.2e-18 Score=149.66 Aligned_cols=88 Identities=7% Similarity=0.044 Sum_probs=81.3
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChH
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVE 226 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~ 226 (276)
.|..+|+|++++.+|+.++|+ +++||++||+|| ++|||+|+.|+|.|++++++|+++|++||+||. |+++
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~-~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMS-SLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred cCCCCCceEEECCCCCEEeHH-HhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence 568899999999999999999 899999999999 999999999999999999999999999999996 5677
Q ss_pred HHHHHHHHHHhcccCCeeEEEeeC
Q psy1172 227 SHHDWIKALVRDCILGLLINLSVD 250 (276)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~D 250 (276)
.+++|++++ +++||+++|
T Consensus 93 ~~~~f~~~~------~~~fpvl~d 110 (199)
T PTZ00056 93 DIRKFNDKN------KIKYNFFEP 110 (199)
T ss_pred HHHHHHHHc------CCCceeeee
Confidence 888898887 788999875
No 39
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.77 E-value=9.1e-19 Score=148.89 Aligned_cols=90 Identities=29% Similarity=0.551 Sum_probs=80.7
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccC-C
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTK-K 95 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~-~ 95 (276)
.+++||+++|++++++++||+..+.. |+ +.|+|||||++|+|++++.++...+|+++++|+.|+++|..+++ +
T Consensus 90 ~~l~fpllsD~~~~~a~~~gv~~~~~----g~--~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 163 (187)
T TIGR03137 90 GKITYPMLGDPTGVLTRNFGVLIEEA----GL--ADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVAAHPG 163 (187)
T ss_pred cCcceeEEECCccHHHHHhCCcccCC----Cc--eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCC
Confidence 35999999999999999999976532 43 56999999999999999998889999999999999999999999 7
Q ss_pred CCcCCCCCCCCceeeCCC
Q psy1172 96 VATPVDWKVGMEIEVRPG 113 (276)
Q Consensus 96 ~~~p~~w~~g~~~~~~p~ 113 (276)
+.|||||++|++++ .|.
T Consensus 164 ~~~~~~~~~~~~~~-~~~ 180 (187)
T TIGR03137 164 EVCPAKWKEGAETL-KPS 180 (187)
T ss_pred eeeCCCCCcCCccc-cCC
Confidence 99999999999997 443
No 40
>KOG0852|consensus
Probab=99.76 E-value=1.6e-18 Score=141.65 Aligned_cols=119 Identities=28% Similarity=0.331 Sum_probs=106.0
Q ss_pred cccCCCCCcEEecC-CC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 154 FAAALLPGCSLLGC-QA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 154 ~~G~~aPdF~L~~~-~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
.+..++|+|+-+.+ +| +.++|+ +|+||+|+++|||.+++..|..|+..|.+.+++|++.|++|+++|+|+.++|.+
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~-dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLS-DYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeeh-hhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 45677899998875 66 478898 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC-eeEEEeeCCcchhhhhhhhcccccccCCc--ccccC
Q psy1172 231 WIKALVRDCILG-LLINLSVDDFKEVEGRSRRFQESLNTYGY--LGTYV 276 (276)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~a~~ygv~~~~~~~--lg~~v 276 (276)
|+..-++++|++ +++|+++|... +++|.||++.+..|. +|.||
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~---~IsrdyGvL~~~~G~~lRglfI 129 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNH---EISRDYGVLKEDEGIALRGLFI 129 (196)
T ss_pred HhcCchhhCCcCccccceeeccch---hhHHhcCceecCCCcceeeeEE
Confidence 999999998876 57999999765 479999999887764 57774
No 41
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.75 E-value=3.5e-18 Score=149.74 Aligned_cols=91 Identities=7% Similarity=0.094 Sum_probs=80.4
Q ss_pred cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------Ch
Q psy1172 154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SV 225 (276)
Q Consensus 154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~ 225 (276)
..|+.+|+|+++|.+|+.++|+ +++||++||+|| ++|||+|..|+|+|++++++|+++|++||+|+.| +.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLs-d~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALS-KFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHH-HhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 4789999999999999999999 899999999999 9999999999999999999999999999999963 45
Q ss_pred HHHHHHH-HHHHhcccCCeeEEEeeCCc
Q psy1172 226 ESHHDWI-KALVRDCILGLLINLSVDDF 252 (276)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~~l~D~~ 252 (276)
+.+++|+ +++ +++||++.|.+
T Consensus 152 ~ei~~f~~~~~------g~~fPvl~~~D 173 (236)
T PLN02399 152 PEIKQFACTRF------KAEFPIFDKVD 173 (236)
T ss_pred HHHHHHHHHhc------CCCCccccccC
Confidence 6677776 455 77899886543
No 42
>PLN02412 probable glutathione peroxidase
Probab=99.75 E-value=3.1e-18 Score=143.12 Aligned_cols=98 Identities=7% Similarity=0.078 Sum_probs=80.1
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHH-
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVES- 227 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~- 227 (276)
+.+|+|+|++.+|+.++|+ +++||++||+|| ++|||+|+.|+|.|++++++|+++|++|++||.| +.+.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~-~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLN-QYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHH-HhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 6799999999999999999 899999999999 9999999999999999999999999999999975 3333
Q ss_pred HHHHHHHHHhcccCCeeEEEeeC--Ccchhhhhhhhccc
Q psy1172 228 HHDWIKALVRDCILGLLINLSVD--DFKEVEGRSRRFQE 264 (276)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~D--~~~~~~~~a~~ygv 264 (276)
++.|.+++ +++||+++| .++ ...++.|++
T Consensus 85 ~~~~~~~~------~~~fpvl~~~d~~g--~~~~~~~~~ 115 (167)
T PLN02412 85 QQTVCTRF------KAEFPIFDKVDVNG--KNTAPLYKY 115 (167)
T ss_pred HHHHHHcc------CCCCceEeEEeeCC--CCCCHHHHH
Confidence 33445655 778999874 332 134555654
No 43
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.75 E-value=3.3e-18 Score=144.96 Aligned_cols=88 Identities=10% Similarity=0.221 Sum_probs=73.6
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEE-EEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--------h
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGIL-FSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--------V 225 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL-~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--------~ 225 (276)
.++.+|+|++++.+|+.++|+ +|+||++|| ++| ++|||+|+.|||.|++++++|+++|+.||+||.|+ .
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs-~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLS-KFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCCcccceEeEcCCCCEEeHH-HhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence 357799999999999999999 899997654 456 99999999999999999999999999999999752 3
Q ss_pred HHHHHHHH-HHHhcccCCeeEEEeeC
Q psy1172 226 ESHHDWIK-ALVRDCILGLLINLSVD 250 (276)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~~l~D 250 (276)
+..++|.. ++ +++||+++|
T Consensus 94 ~~~~~f~~~~~------~~~fpv~~d 113 (183)
T PTZ00256 94 PEIKEYVQKKF------NVDFPLFQK 113 (183)
T ss_pred HHHHHHHHHhc------CCCCCCceE
Confidence 45555543 44 778999865
No 44
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.74 E-value=4.5e-18 Score=139.86 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHHHHH
Q psy1172 160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESHHDW 231 (276)
Q Consensus 160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~~~~ 231 (276)
=+|++++.+|++++|+ +++||++||+|| ++|||+|..++|.|++++++|+++|+.|++||. |+++.+++|
T Consensus 3 ~~f~l~~~~G~~~~l~-~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 3 YSFEVKDARGRTVSLE-KYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred ccceeECCCCCEecHH-HhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence 4799999999999999 899999999999 999999999999999999999999999999994 667888889
Q ss_pred HHH-HHhcccCCeeEEEeeC
Q psy1172 232 IKA-LVRDCILGLLINLSVD 250 (276)
Q Consensus 232 ~~~-~~~~~~~~~~~~~l~D 250 (276)
+++ + +++||+++|
T Consensus 81 ~~~~~------~~~fp~~~d 94 (153)
T TIGR02540 81 ARRNY------GVTFPMFSK 94 (153)
T ss_pred HHHhc------CCCCCccce
Confidence 875 6 778999876
No 45
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.73 E-value=2.1e-17 Score=133.36 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHhCC---cEEEEEeCCC----hHHHH
Q psy1172 158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPV-CTTELARVLQLIKEFEQRT---CKVIALSCDS----VESHH 229 (276)
Q Consensus 158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~-C~~el~~l~~~~~~~~~~g---v~Vv~VS~D~----~~~~~ 229 (276)
.+|+|++++.+|+.++++ +++||++||+|| ++||++ |..+++.|++++++|++++ +++++||.|+ ++.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~-~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLS-DLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchH-HhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 479999999999999999 789999999999 899997 9999999999999998875 9999999864 56777
Q ss_pred HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
+|.+++ +.+|++++|.......+++.||+....
T Consensus 79 ~~~~~~------~~~~~~l~~~~~~~~~~~~~~g~~~~~ 111 (142)
T cd02968 79 AYAKAF------GPGWIGLTGTPEEIEALAKAFGVYYEK 111 (142)
T ss_pred HHHHHh------CCCcEEEECCHHHHHHHHHHhcEEEEe
Confidence 888777 678999998765556779999987654
No 46
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=3.6e-17 Score=136.79 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=88.7
Q ss_pred cCCCCCcEEecCCCCeEEecccC-CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--------hH
Q psy1172 156 AALLPGCSLLGCQASLVILECSI-PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--------VE 226 (276)
Q Consensus 156 G~~aPdF~L~~~~G~~v~l~~~~-~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--------~~ 226 (276)
|+.+|+|++++.+|+.++|+ ++ +|+++||+|| ++|||.|..+++.|++++++|+++++++|+||.|+ ++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~-~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLA-DFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHH-HHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHH
Confidence 68899999999999999999 77 8999999999 99999999999999999999998999999999975 45
Q ss_pred HHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172 227 SHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
..++|.+++ +++|++++|.++ .+++.||+...++
T Consensus 79 ~~~~~~~~~------~~~~~~l~D~~~---~~~~~~~v~~~P~ 112 (171)
T cd02969 79 NMKAKAKEH------GYPFPYLLDETQ---EVAKAYGAACTPD 112 (171)
T ss_pred HHHHHHHHC------CCCceEEECCch---HHHHHcCCCcCCc
Confidence 566666665 778999999765 4678888865444
No 47
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.69 E-value=2.3e-16 Score=131.45 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=93.0
Q ss_pred ccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHH
Q psy1172 151 IDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHH 229 (276)
Q Consensus 151 ~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~ 229 (276)
..+.+|+.+|+|++++.+|+.++++ +++||+++|+|| ++|||.|+.+++.|++++++|.+.+++|++|+.|+ .+.++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~-~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELK-DLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHH-HcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 4567899999999999999999999 789999999999 99999999999999999999999899999999974 46778
Q ss_pred HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
.|.+++ +++|+++.|... .+.+.||+..-+
T Consensus 111 ~~~~~~------~~~~~~~~d~~~---~~~~~~~v~~~P 140 (173)
T PRK03147 111 NFVNRY------GLTFPVAIDKGR---QVIDAYGVGPLP 140 (173)
T ss_pred HHHHHh------CCCceEEECCcc---hHHHHcCCCCcC
Confidence 888777 778999988654 457788875443
No 48
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.69 E-value=1.3e-16 Score=133.83 Aligned_cols=83 Identities=39% Similarity=0.725 Sum_probs=75.3
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCC
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKV 96 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~ 96 (276)
.+++||+++|++++++++||+..... |. +.|++||||++|+|++.+..+...+++.++|++.|+.++...+|++
T Consensus 91 ~~~~f~~l~D~~~~~~~~~gv~~~~~----~~--~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~ 164 (173)
T cd03015 91 GKINFPLLADPKKKISRDYGVLDEEE----GV--ALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGE 164 (173)
T ss_pred cCcceeEEECCchhHHHHhCCccccC----Cc--eeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhhcCC
Confidence 46899999999999999999875532 33 5689999999999999999888889999999999999999999999
Q ss_pred CcCCCCCCC
Q psy1172 97 ATPVDWKVG 105 (276)
Q Consensus 97 ~~p~~w~~g 105 (276)
+||+||++|
T Consensus 165 ~~~~~~~~~ 173 (173)
T cd03015 165 VCPANWKPG 173 (173)
T ss_pred CcCCCCCCC
Confidence 999999998
No 49
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.68 E-value=1.6e-16 Score=135.37 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=84.5
Q ss_pred cccccCCCCCcEEecCCCCeEEecc-cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILEC-SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD 230 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~-~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~ 230 (276)
++.+|+++|+|+++|.+|+.+++++ .++||++||+|| ++|||+|++++|.+++++++ .++.|++||.|+++.+++
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~~~~ 120 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAEHRR 120 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHHHH
Confidence 4579999999999999999999952 579999999999 99999999999999998754 478899999999999999
Q ss_pred HHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccC
Q psy1172 231 WIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
|.+++ +++++.+. .+ .+.++.||+..-++
T Consensus 121 ~~~~~------~~~~~~~~-~~---~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 121 FLKDH------ELGGERYV-VS---AEIGMAFQVGKIPY 149 (189)
T ss_pred HHHhc------CCCcceee-ch---hHHHHhccCCccce
Confidence 99888 55554332 22 24577888754443
No 50
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.68 E-value=9.7e-17 Score=136.17 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=81.9
Q ss_pred ccccCCCCCcEEecCCC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHH
Q psy1172 153 RFAAALLPGCSLLGCQA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHH 229 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~ 229 (276)
..+|+.+|+|++++.+| +.++++...+||++||+|| ++|||+|++|+|.|++++ ++|++|++||.| +++.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHHH
Confidence 46899999999999984 6666662348999999999 999999999999998764 468999999985 567788
Q ss_pred HHHHHHHhcccCCeeEEE-eeCCcchhhhhhhhcccccccC
Q psy1172 230 DWIKALVRDCILGLLINL-SVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
+|.+++ +++|++ +.|..+. .++.||+...++
T Consensus 114 ~~~~~~------~~~~~~~~~D~~~~---~~~~~gv~~~P~ 145 (185)
T PRK15412 114 SWLKEL------GNPYALSLFDGDGM---LGLDLGVYGAPE 145 (185)
T ss_pred HHHHHc------CCCCceEEEcCCcc---HHHhcCCCcCCe
Confidence 898888 677874 6675543 567888865543
No 51
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.65 E-value=8.7e-16 Score=119.33 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=80.2
Q ss_pred CCcEEecCCCCeEEecccCC-CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhc
Q psy1172 160 PGCSLLGCQASLVILECSIP-AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRD 238 (276)
Q Consensus 160 PdF~L~~~~G~~v~l~~~~~-gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~ 238 (276)
|+|++++.+|+.++|+ +++ ||++||+|| ++|||+|+.++|.|++++++++ .++.|++|+.++.+..++|++++
T Consensus 1 p~f~l~~~~G~~~~l~-~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~--- 74 (114)
T cd02967 1 PTFDLTTIDGAPVRIG-GISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKH--- 74 (114)
T ss_pred CCceeecCCCCEEEcc-cccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHh---
Confidence 8999999999999999 776 999999999 9999999999999999988874 46888999877888888999988
Q ss_pred ccCCee-EEEeeCCcchhhhhhhhcccccccC
Q psy1172 239 CILGLL-INLSVDDFKEVEGRSRRFQESLNTY 269 (276)
Q Consensus 239 ~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~ 269 (276)
++. +|++.+ . .++++||+..-++
T Consensus 75 ---~~~~~p~~~~--~---~~~~~~~~~~~P~ 98 (114)
T cd02967 75 ---GLEAFPYVLS--A---ELGMAYQVSKLPY 98 (114)
T ss_pred ---CCCCCcEEec--H---HHHhhcCCCCcCe
Confidence 663 777753 2 3577888864444
No 52
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.65 E-value=2.8e-16 Score=124.90 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC------CChHHHHHHHHHHHhcccCC
Q psy1172 169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC------DSVESHHDWIKALVRDCILG 242 (276)
Q Consensus 169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~------D~~~~~~~~~~~~~~~~~~~ 242 (276)
|+.++|+ +++||++||+|| ++|||+|..++|.|++++++|+++|+.||+|+. ++++.+++|++++ +
T Consensus 13 ~~~v~l~-~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------~ 84 (126)
T cd03012 13 DKPLSLA-QLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------G 84 (126)
T ss_pred CCccCHH-HhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc------C
Confidence 4678998 789999999999 999999999999999999999999999999986 3567778888877 8
Q ss_pred eeEEEeeCCcchhhhhhhhccccc
Q psy1172 243 LLINLSVDDFKEVEGRSRRFQESL 266 (276)
Q Consensus 243 ~~~~~l~D~~~~~~~~a~~ygv~~ 266 (276)
++||+++|.+.. .++.||+..
T Consensus 85 ~~~p~~~D~~~~---~~~~~~v~~ 105 (126)
T cd03012 85 ITYPVANDNDYA---TWRAYGNQY 105 (126)
T ss_pred CCCCEEECCchH---HHHHhCCCc
Confidence 899999986543 577788753
No 53
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.64 E-value=5e-16 Score=123.27 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=80.3
Q ss_pred CCCCCcEEecCCC--CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC-CChHHHHHHHH
Q psy1172 157 ALLPGCSLLGCQA--SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC-DSVESHHDWIK 233 (276)
Q Consensus 157 ~~aPdF~L~~~~G--~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~-D~~~~~~~~~~ 233 (276)
+.+|+|++++.+| +.++++ +++||++||+|| ++|||+|..++|.|+++.+++ +++||+|+. ++.+.+++|.+
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~-~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSA-DLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHH-HcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999988 788888 889999999999 999999999999999987764 599999997 46778888887
Q ss_pred HHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172 234 ALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 234 ~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
++ +++|+ ++.|..+ .+++.||+..-+
T Consensus 76 ~~------~~~~~~~~~D~~~---~~~~~~~v~~~P 102 (127)
T cd03010 76 RH------GNPYAAVGFDPDG---RVGIDLGVYGVP 102 (127)
T ss_pred hc------CCCCceEEECCcc---hHHHhcCCCCCC
Confidence 77 66664 5567543 467788886543
No 54
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.63 E-value=1.2e-15 Score=124.52 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=69.6
Q ss_pred eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-------CcEEEEEeCCC-hHHHHHHHHHHHhcccCC
Q psy1172 171 LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-------TCKVIALSCDS-VESHHDWIKALVRDCILG 242 (276)
Q Consensus 171 ~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-------gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~ 242 (276)
.++|+ +|+||+++|+|| |+|||+|++++|.|+++|++++++ +++||+||.|. .+..++|.+++ +
T Consensus 17 ~~~ls-~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------~ 88 (146)
T cd03008 17 REIVA-RLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------P 88 (146)
T ss_pred cccHH-HhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC------C
Confidence 56777 899999999999 999999999999999999988764 69999999985 44566777776 5
Q ss_pred eeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172 243 LLINLSVDDFKEVEGRSRRFQESLNTYGY 271 (276)
Q Consensus 243 ~~~~~l~D~~~~~~~~a~~ygv~~~~~~~ 271 (276)
+.++++...+.....+++.||+..-++-+
T Consensus 89 ~~~~~~p~~~~~~~~l~~~y~v~~iPt~v 117 (146)
T cd03008 89 KKWLFLPFEDEFRRELEAQFSVEELPTVV 117 (146)
T ss_pred CCceeecccchHHHHHHHHcCCCCCCEEE
Confidence 45543322222233568889986544433
No 55
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.62 E-value=1.5e-15 Score=127.52 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=79.3
Q ss_pred ccccCCCCCcEEecCCCC--eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHH
Q psy1172 153 RFAAALLPGCSLLGCQAS--LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHH 229 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~--~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~ 229 (276)
..+|+++|+|++++.+|+ .+++++..+||+++|+|| ++|||+|+.++|.+++++ ++|++|++||.+ +.+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChHHHH
Confidence 468999999999999987 455552247999999999 999999999999987764 458999999986 456667
Q ss_pred HHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhccccccc
Q psy1172 230 DWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
+|.+++ +++|+ ++.|..+. +++.|++..-+
T Consensus 109 ~~~~~~------~~~f~~v~~D~~~~---~~~~~~v~~~P 139 (173)
T TIGR00385 109 KFLKEL------GNPYQAILIDPNGK---LGLDLGVYGAP 139 (173)
T ss_pred HHHHHc------CCCCceEEECCCCc---hHHhcCCeeCC
Confidence 788777 67776 55676543 57778875433
No 56
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.60 E-value=4e-15 Score=125.95 Aligned_cols=86 Identities=9% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHH
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESH 228 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~ 228 (276)
+.+++|++++.+|+.++|+ +|+||++||+|| |+||+.|. +++.|++++++|+++|++|+||+. ++.+.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls-~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLE-KYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHH-HhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 3589999999999999999 899999999999 99999885 899999999999999999999987 456778
Q ss_pred HHHHH-HHHhcccCCeeEEEeeCC
Q psy1172 229 HDWIK-ALVRDCILGLLINLSVDD 251 (276)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~l~D~ 251 (276)
++|++ .+ +++||++++.
T Consensus 80 ~~f~~~~~------g~~Fpv~~k~ 97 (183)
T PRK10606 80 KTYCRTTW------GVTFPMFSKI 97 (183)
T ss_pred HHHHHHcc------CCCceeEEEE
Confidence 88876 45 7789999443
No 57
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.8e-15 Score=118.36 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=97.6
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
.+++|++||+|+|.+.+.+.++|+ +++||..+|+.||+-.+|.|..|...|++...++ .+..|+.||+|.|+.+++|
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~-~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLA-DFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPFAQKRF 93 (158)
T ss_pred CCccCCcCCceEEEcCcccceecc-ccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChhHHhhh
Confidence 368999999999999999999999 9999999999999999999999999999988877 4589999999999999999
Q ss_pred HHHHHhcccCCee-EEEeeCCcchhhhhhhhcccccccC---Ccccc
Q psy1172 232 IKALVRDCILGLL-INLSVDDFKEVEGRSRRFQESLNTY---GYLGT 274 (276)
Q Consensus 232 ~~~~~~~~~~~~~-~~~l~D~~~~~~~~a~~ygv~~~~~---~~lg~ 274 (276)
+... ++. ...+||.- ...+.+.||+.+..- |++.|
T Consensus 94 C~ae------Gi~nv~~lSd~r--~~~Fge~yGv~I~egpL~gLlAR 132 (158)
T COG2077 94 CGAE------GIENVITLSDFR--DRAFGENYGVLINEGPLAGLLAR 132 (158)
T ss_pred hhhc------CcccceEhhhhh--hhhhhHhhCEEeccccccCeeee
Confidence 9999 554 77777753 335688999998877 55544
No 58
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.4e-14 Score=117.37 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=62.5
Q ss_pred CCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 16 ~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
+++|+||||||++++|+++||++.+..........+.|+|||||++|+|+++| +..++..|.+|+++.|++++
T Consensus 84 k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 84 KHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred HhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHHhc
Confidence 36799999999999999999999876532222234789999999999999999 58999999999999999875
No 59
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.52 E-value=3.9e-14 Score=111.45 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=78.4
Q ss_pred CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--hHHHHHHHHHHHh
Q psy1172 160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--VESHHDWIKALVR 237 (276)
Q Consensus 160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--~~~~~~~~~~~~~ 237 (276)
|+|++++.+|+.++++ .++||+++|+|| ++|||+|+.+++.|++++++ +.+++|+.|+ ++.+++|.+++
T Consensus 1 p~f~l~~~~g~~~~~~-~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~-- 71 (123)
T cd03011 1 PLFTATTLDGEQFDLE-SLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK-- 71 (123)
T ss_pred CCceeecCCCCEeeHH-HhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc--
Confidence 8999999999999999 789999999999 99999999999999998876 6788888864 67788888887
Q ss_pred cccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 238 DCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 238 ~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+++|+++.|.+. ++++.|++..-
T Consensus 72 ----~~~~~~~~d~~~---~~~~~~~i~~~ 94 (123)
T cd03011 72 ----GYGFPVINDPDG---VISARWGVSVT 94 (123)
T ss_pred ----CCCccEEECCCc---HHHHhCCCCcc
Confidence 778999988654 46777887543
No 60
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.51 E-value=6.9e-14 Score=106.79 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=83.2
Q ss_pred CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC--hHHHHHHHHHHHhc
Q psy1172 161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS--VESHHDWIKALVRD 238 (276)
Q Consensus 161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~--~~~~~~~~~~~~~~ 238 (276)
+|++.+.+|+.++++ +++||+++|+|| ++||++|...++.|.++.+++.+.++.+++|+.|+ ++..+++.+.+
T Consensus 1 ~~~~~~~~g~~~~~~-~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~--- 75 (116)
T cd02966 1 DFSLPDLDGKPVSLS-DLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY--- 75 (116)
T ss_pred CccccCCCCCEeehH-HcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc---
Confidence 588999999999998 788999999999 99999999999999999999988889999999997 78888888887
Q ss_pred ccCCeeEEEeeCCcchhhhhhhhcccc
Q psy1172 239 CILGLLINLSVDDFKEVEGRSRRFQES 265 (276)
Q Consensus 239 ~~~~~~~~~l~D~~~~~~~~a~~ygv~ 265 (276)
+.+++++.|... .+++.||+.
T Consensus 76 ---~~~~~~~~~~~~---~~~~~~~~~ 96 (116)
T cd02966 76 ---GITFPVLLDPDG---ELAKAYGVR 96 (116)
T ss_pred ---CCCcceEEcCcc---hHHHhcCcC
Confidence 678999988643 468888885
No 61
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.51 E-value=5.9e-14 Score=135.31 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=82.9
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC------hH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS------VE 226 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~------~~ 226 (276)
+..++.+|+|++.|.+|+.++++ +||+|||+|| ++|||+|+.++|.|++++++++..+++||+|+.+. .+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK---KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc---CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 45678999999999999998887 8999999999 99999999999999999999988899999998731 23
Q ss_pred HHHHHHHHHHhcccCCe-eEEEeeCCcchhhhhhhhcccccccCC
Q psy1172 227 SHHDWIKALVRDCILGL-LINLSVDDFKEVEGRSRRFQESLNTYG 270 (276)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~a~~ygv~~~~~~ 270 (276)
..++|.+.+ ++ .++++.|.+. .+++.|++..-++-
T Consensus 108 ~~~~~~~~~------~y~~~pV~~D~~~---~lak~fgV~giPTt 143 (521)
T PRK14018 108 DFQKWYAGL------DYPKLPVLTDNGG---TLAQSLNISVYPSW 143 (521)
T ss_pred HHHHHHHhC------CCcccceeccccH---HHHHHcCCCCcCeE
Confidence 334444433 43 4678877544 46788888654443
No 62
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.48 E-value=1.2e-13 Score=110.26 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=70.9
Q ss_pred EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCChHHHHHHHHHHHhcccC
Q psy1172 164 LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSVESHHDWIKALVRDCIL 241 (276)
Q Consensus 164 L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~~~~~~~~~~~~~~~~~ 241 (276)
|.+.+|+.++++ +++||++||+|| ++||++|+.++|.|++++++++++ +++|++||.|... +.|.+.+.+.
T Consensus 3 l~~~~G~~v~l~-~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~--- 75 (131)
T cd03009 3 LLRNDGGKVPVS-SLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKM--- 75 (131)
T ss_pred ccccCCCCccHH-HhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcC---
Confidence 567899999999 899999999999 999999999999999999999875 7999999998643 3454444322
Q ss_pred Ce-eEEEeeCCcchhhhhhhhccccccc
Q psy1172 242 GL-LINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 242 ~~-~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
+. .+++. + ......+++.||+..-+
T Consensus 76 ~~~~~~~~-~-~~~~~~~~~~~~v~~~P 101 (131)
T cd03009 76 PWLAVPFS-D-RERRSRLNRTFKIEGIP 101 (131)
T ss_pred CeeEcccC-C-HHHHHHHHHHcCCCCCC
Confidence 21 23322 1 11223457788886433
No 63
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.48 E-value=1.4e-13 Score=110.22 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=68.8
Q ss_pred CC-CeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC-hHHHHHHHHHHHhcccCCe
Q psy1172 168 QA-SLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDS-VESHHDWIKALVRDCILGL 243 (276)
Q Consensus 168 ~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~~ 243 (276)
|| ++++++ +++||++||+|| ++||++|+.++|.|+++++++++. +++|++||.|. ....++|.+++ +
T Consensus 5 ~~~~~v~l~-~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------~- 75 (132)
T cd02964 5 DGEGVVPVS-ALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------P- 75 (132)
T ss_pred cCCccccHH-HhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC------C-
Confidence 44 489998 899999999999 999999999999999999999875 79999999984 45666666665 3
Q ss_pred eEEEeeCCc-chhhhhhhhcccccccC
Q psy1172 244 LINLSVDDF-KEVEGRSRRFQESLNTY 269 (276)
Q Consensus 244 ~~~~l~D~~-~~~~~~a~~ygv~~~~~ 269 (276)
.+..+...+ ......++.||+..-++
T Consensus 76 ~~~~~~~~d~~~~~~~~~~~~v~~iPt 102 (132)
T cd02964 76 PWLAVPFEDEELRELLEKQFKVEGIPT 102 (132)
T ss_pred CeEeeccCcHHHHHHHHHHcCCCCCCE
Confidence 222221112 22234577788765443
No 64
>KOG0854|consensus
Probab=99.47 E-value=1.3e-13 Score=113.14 Aligned_cols=111 Identities=35% Similarity=0.529 Sum_probs=93.5
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|+.+|+|+..++.|+ +.+.+.+.+.|.||+..|++++|.|+.|+.++.++..+|..+|+..|++|+|+.++|+.|.
T Consensus 6 l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHH
Confidence 358999999999888885 6788667778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccC---CeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 233 KALVRDCIL---GLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 233 ~~~~~~~~~---~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+..+..+.. .++||++.|+..+ ++-.||....
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~re---la~~l~MlD~ 119 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRE---LAFLLNMLDP 119 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchh---hhhhhcccCH
Confidence 888543221 3679999886544 5667776543
No 65
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=1.4e-13 Score=143.54 Aligned_cols=105 Identities=13% Similarity=0.025 Sum_probs=85.0
Q ss_pred cccCCCCCcEEec--CCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC---CCh---
Q psy1172 154 FAAALLPGCSLLG--CQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC---DSV--- 225 (276)
Q Consensus 154 ~~G~~aPdF~L~~--~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~---D~~--- 225 (276)
..|+++|+|+.++ .+|+.+++..+++||++||+|| ++||++|+.++|.|++++++|+++++.||+|+. |..
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~ 470 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDL 470 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccH
Confidence 4799999999886 6888888855899999999999 999999999999999999999999999999984 332
Q ss_pred HHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 226 ESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
+..+++.+++ ++.||+..|.+. ++.+.|++..-+
T Consensus 471 ~~~~~~~~~~------~i~~pvv~D~~~---~~~~~~~V~~iP 504 (1057)
T PLN02919 471 EAIRNAVLRY------NISHPVVNDGDM---YLWRELGVSSWP 504 (1057)
T ss_pred HHHHHHHHHh------CCCccEEECCch---HHHHhcCCCccc
Confidence 3344445444 778998888654 457778876443
No 66
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=99.42 E-value=3.6e-14 Score=90.00 Aligned_cols=37 Identities=35% Similarity=0.689 Sum_probs=34.3
Q ss_pred hhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccC
Q psy1172 87 SLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKL 123 (276)
Q Consensus 87 ~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~ 123 (276)
|||++++++++|||||+|||++||+|+.|.++|.++|
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivpp~~s~~~a~k~~ 37 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVPPPVSQEEAKKRF 37 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-TTSSTTHHHHHH
T ss_pred CceehhhhCcccCcCCCCCCCeEcCCCCCHHHHHHHc
Confidence 6899999999999999999999999999999998876
No 67
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-12 Score=104.07 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=94.1
Q ss_pred ccccCCCCCcEEecC------CC-CeEEecccCCCCeEEEEEEcCCCCcccHH-HHHHHHHHHHHHHhCCc-EEEEEeCC
Q psy1172 153 RFAAALLPGCSLLGC------QA-SLVILECSIPAFWGILFSHPSDFTPVCTT-ELARVLQLIKEFEQRTC-KVIALSCD 223 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~------~G-~~v~l~~~~~gk~vvL~f~pa~~cp~C~~-el~~l~~~~~~~~~~gv-~Vv~VS~D 223 (276)
.++|+++|..+++.. +| ..++..+.|+||.|||+--|++++|+|.. ++|.+.+++++|+++|+ +|++||++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 468999999999765 22 34666667899999999999999999997 89999999999999999 79999999
Q ss_pred ChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCc
Q psy1172 224 SVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGY 271 (276)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~ 271 (276)
+++...+|.+.... +-++.++.|..+ ++.++.|...+..+.
T Consensus 83 D~FVm~AWak~~g~----~~~I~fi~Dg~g---eFTk~~Gm~~d~~~~ 123 (165)
T COG0678 83 DAFVMNAWAKSQGG----EGNIKFIPDGNG---EFTKAMGMLVDKSDL 123 (165)
T ss_pred cHHHHHHHHHhcCC----CccEEEecCCCc---hhhhhcCceeecccC
Confidence 99999999999832 226889988655 478889988776644
No 68
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.33 E-value=3.7e-12 Score=107.62 Aligned_cols=107 Identities=7% Similarity=-0.012 Sum_probs=81.0
Q ss_pred ccccCCCCCcEEecC-----CCC-----eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEE-----
Q psy1172 153 RFAAALLPGCSLLGC-----QAS-----LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKV----- 217 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~-----~G~-----~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~V----- 217 (276)
+.+|+++|..++.+- +|. .++++ +++||+.||+|| |+||++|+.|+|.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~-~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSA-ELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHH-HcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 568999999988754 333 55666 899999999999 99999999999999987 6788999
Q ss_pred -EEEeCCC-hHHHHHHHHHHHhcccCCeeEE---EeeCCcchhhhhhhhcccccccCC
Q psy1172 218 -IALSCDS-VESHHDWIKALVRDCILGLLIN---LSVDDFKEVEGRSRRFQESLNTYG 270 (276)
Q Consensus 218 -v~VS~D~-~~~~~~~~~~~~~~~~~~~~~~---~l~D~~~~~~~~a~~ygv~~~~~~ 270 (276)
++||.|+ ......|.+.+.++. +..|| ++.|.++ ..+.+||+...++.
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~--~~~~P~~~vllD~~g---~v~~~~gv~~~P~T 149 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKG--KKENPWSQVVLDDKG---AVKNAWQLNSEDSA 149 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHh--cccCCcceEEECCcc---hHHHhcCCCCCCce
Confidence 9999985 345556666554443 44555 8888654 35778998766544
No 69
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.30 E-value=9e-12 Score=93.62 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhh
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGR 258 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 258 (276)
||+++|+|| ++||++|.+++|.|.+++++++ +.++++|+||.|.. ..+|.+...+. +.++..+...+......
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN---NFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC---TTSSEEEETTTHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc---CCCceEEeeCcchHHHH
Confidence 799999999 9999999999999999999998 67899999999843 34555555443 33444433333445566
Q ss_pred hhhcccccccC
Q psy1172 259 SRRFQESLNTY 269 (276)
Q Consensus 259 a~~ygv~~~~~ 269 (276)
.+.|++..-++
T Consensus 75 ~~~~~i~~iP~ 85 (95)
T PF13905_consen 75 LKKYGINGIPT 85 (95)
T ss_dssp HHHTT-TSSSE
T ss_pred HHHCCCCcCCE
Confidence 88898865433
No 70
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.30 E-value=4.8e-12 Score=106.41 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=53.6
Q ss_pred cccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 154 FAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 154 ~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.++...|+|+|. +|+.++++ +|+ ||+|| ++|||+|++|+|.|+++++++ |+.|++||+|..
T Consensus 50 ~~~~~~~~f~l~--dG~~v~ls-d~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~ 110 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLA-DWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ 110 (181)
T ss_pred cCCCCCCccCCC--CCCEeehh-Hce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC
Confidence 456678999995 89999999 776 77899 999999999999999999987 699999999843
No 71
>KOG0541|consensus
Probab=99.26 E-value=2.5e-11 Score=97.94 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=91.7
Q ss_pred cccccCCCCC--cE-EecC----CCCeEEecccCCCCeEEEEEEcCCCCcccH-HHHHHHHHHHHHHHhCCc-EEEEEeC
Q psy1172 152 DRFAAALLPG--CS-LLGC----QASLVILECSIPAFWGILFSHPSDFTPVCT-TELARVLQLIKEFEQRTC-KVIALSC 222 (276)
Q Consensus 152 ~~~~G~~aPd--F~-L~~~----~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~-~el~~l~~~~~~~~~~gv-~Vv~VS~ 222 (276)
.+.+|+..|+ .+ +.+. .+.++++++.++||.+||+-.|++++|+|. .++|.+.+..++|+.+|+ +|++||+
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 3468999999 33 1221 122788888899999999999999999955 779999999999999999 6889999
Q ss_pred CChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccccCCcc
Q psy1172 223 DSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNTYGYL 272 (276)
Q Consensus 223 D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~~~~l 272 (276)
|+++..++|.+.+.+ +-...|++|..+. +.+.+|+..+..+.+
T Consensus 88 nDpFv~~aW~k~~g~----~~~V~f~aD~~g~---ftk~lgleld~~d~~ 130 (171)
T KOG0541|consen 88 NDPFVMKAWAKSLGA----NDHVKFVADPAGE---FTKSLGLELDLSDKL 130 (171)
T ss_pred CcHHHHHHHHhhcCc----cceEEEEecCCCc---eeeeccceeeecccc
Confidence 999999999999943 3368899997664 677888877765543
No 72
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.00 E-value=3.3e-09 Score=89.18 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=81.4
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCC-cccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC----hHH
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFT-PVCTTELARVLQLIKEFEQR--TCKVIALSCDS----VES 227 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~c-p~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~----~~~ 227 (276)
.....|+|+|.|.+|+.++++ +++||++||+|. -+.| ..|...+..|.++.+++.+. .++++.||+|+ ++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~-~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLD-DLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGG-GGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHH-HhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 345679999999999999998 899999999999 5556 57999999999999999875 68999999975 567
Q ss_pred HHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 228 HHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
++++.+.+ +..+..+.....++.++++.|++...
T Consensus 106 L~~Y~~~~------~~~~~~ltg~~~~i~~l~~~~~v~~~ 139 (174)
T PF02630_consen 106 LKKYAKKF------GPDFIGLTGSREEIEELAKQFGVYYE 139 (174)
T ss_dssp HHHHHHCH------TTTCEEEEEEHHHHHHHHHHCTHCEE
T ss_pred HHHHHHhc------CCCcceeEeCHHHHHHHHHHHHhhhc
Confidence 77777776 44455554444466667888887653
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.89 E-value=1.9e-09 Score=88.75 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=40.6
Q ss_pred CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 169 ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 169 G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
|+.++++ ++.||+|| ++|||+|++|+|.|+++++++ |+.|++||.|..
T Consensus 44 G~~~~l~-----~~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 44 GRHANQD-----DYALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred chhhhcC-----CCEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 6666655 34599999 999999999999999999887 589999999853
No 74
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.82 E-value=1.6e-08 Score=84.32 Aligned_cols=68 Identities=28% Similarity=0.383 Sum_probs=53.9
Q ss_pred CCCC-ceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec-CCCCCCCHHHHHHHHHh
Q psy1172 17 GKLP-YPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY-PATTGRNFDEILRVLDS 87 (276)
Q Consensus 17 ~~l~-fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~-~~~~~r~~~eilr~l~~ 87 (276)
.+++ ||+++| ++++++++||+..... ...|+ +.|++||||++|+|++++++ .....+++++++++|++
T Consensus 97 ~~~~~~~~lsD~~~~~~~~~~gv~~~~~-~~~g~--~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 97 EGLENVITLSDFRDHSFGKAYGVAIAEG-PLKGL--LARAVFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred CCCCCceEeecCCccHHHHHhCCeeccc-ccCCc--eeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 4476 899999 5669999999975421 11254 68999999999999999974 56778899999999864
No 75
>KOG2501|consensus
Probab=98.80 E-value=2.1e-08 Score=81.91 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=70.8
Q ss_pred cEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC-hHHHHHHHHHHHhc
Q psy1172 162 CSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS-VESHHDWIKALVRD 238 (276)
Q Consensus 162 F~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~-~~~~~~~~~~~~~~ 238 (276)
..|...+|..+..++.++||.|.|+|= +.|||+|+.-.|.|.++|++.++.+ ++||-||.|. .++...+...+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~--- 90 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH--- 90 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc---
Confidence 677888888888777899976555555 9999999999999999999997664 8999999985 45555555444
Q ss_pred ccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 239 CILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 239 ~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
...+..+--.+....+..+.|+|...
T Consensus 91 ---~~~W~~iPf~d~~~~~l~~ky~v~~i 116 (157)
T KOG2501|consen 91 ---HGDWLAIPFGDDLIQKLSEKYEVKGI 116 (157)
T ss_pred ---CCCeEEecCCCHHHHHHHHhcccCcC
Confidence 33333332223344455777887543
No 76
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.75 E-value=2.6e-08 Score=76.29 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=46.8
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+|+++||.|| ++||++|+..+|.|+++++++ .++.++.|+.|......++++++
T Consensus 13 ~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~ 67 (103)
T cd02985 13 AKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRRE 67 (103)
T ss_pred cCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHc
Confidence 46899999999 999999999999999999998 56899999998654445666666
No 77
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.72 E-value=5.7e-08 Score=79.49 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=53.0
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
.+++||+++|+++.++++||+.........+.....|++||||++|+|++++. ...++++.+++|+.++
T Consensus 85 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~-g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 85 ELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD-KFKTSNHHDVVLDYLK 153 (154)
T ss_pred hCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc-CCCcchhHHHHHHHHh
Confidence 45899999999999999999875432111111123589999999999999987 5567788999998875
No 78
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.71 E-value=3.5e-08 Score=81.39 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCceEEEeCccHHHHHhCCCCCCCCCCCCC-CcccceEEEECCCCcEEEEEecCCCCCC
Q psy1172 19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGM-PLTCRAVFIIDPAKKLRLSFLYPATTGR 76 (276)
Q Consensus 19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r 76 (276)
++||||||++++++++|||+.+... .|. ..+.|++|||| +|+|+++++.+...+.
T Consensus 90 ~~f~lLsD~~~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~~ 145 (155)
T cd03013 90 DKIRFLADGNGEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDPGDV 145 (155)
T ss_pred CcEEEEECCCHHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCCCCc
Confidence 3899999999999999999876431 122 12579999999 7999999997766444
No 79
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.69 E-value=1.4e-07 Score=81.55 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=81.2
Q ss_pred CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHH---hCCcEEEEEeCCChHHHHHHHHHHH
Q psy1172 161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFE---QRTCKVIALSCDSVESHHDWIKALV 236 (276)
Q Consensus 161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~---~~gv~Vv~VS~D~~~~~~~~~~~~~ 236 (276)
+|+|.|.+|+.+++. +++||+.+|+|. =++|| .|..++..|.+..+++. ..+++|+.||+|+.....+..+++.
T Consensus 49 ~f~l~d~~G~~~~~~-~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLK-DLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecc-ccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 899999999999999 899999999998 55666 79999999999999987 4568999999987655555555554
Q ss_pred hcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172 237 RDCILGLLINLSVDDFKEVEGRSRRFQESL 266 (276)
Q Consensus 237 ~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~ 266 (276)
+ .+....+..+........+++++|++..
T Consensus 127 ~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~ 155 (207)
T COG1999 127 E-LNFDPRWIGLTGTPEQIEEVAKAYGVFY 155 (207)
T ss_pred c-ccCCCCeeeeeCCHHHHHHHHHHhccee
Confidence 3 1124457777776556666799999985
No 80
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.62 E-value=8e-08 Score=73.43 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
.+++++|.|| ++||++|+..+|.|.++++++++..+.++.|+.|.++
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~ 62 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID 62 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH
Confidence 4789999999 9999999999999999999997666888999988543
No 81
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.60 E-value=5.6e-08 Score=79.02 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred EecCCCCeEEeccc-CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCC
Q psy1172 164 LLGCQASLVILECS-IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILG 242 (276)
Q Consensus 164 L~~~~G~~v~l~~~-~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~ 242 (276)
|++.++....+++. .+|+++||+|| +.||++|+..+|.|.+++++|.+ .+.++.|++|.... ....+++. -.+
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~-~~~~~~~~---V~~ 76 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKW-LPEIDRYR---VDG 76 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCccc-HHHHHHcC---CCC
Confidence 44444444444422 36899999999 99999999999999999999864 47899999886421 22334441 124
Q ss_pred eeEEEeeCCcch
Q psy1172 243 LLINLSVDDFKE 254 (276)
Q Consensus 243 ~~~~~l~D~~~~ 254 (276)
++..++.|.++.
T Consensus 77 iPt~v~~~~~G~ 88 (142)
T cd02950 77 IPHFVFLDREGN 88 (142)
T ss_pred CCEEEEECCCCC
Confidence 566666665443
No 82
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.60 E-value=1.7e-07 Score=75.83 Aligned_cols=65 Identities=26% Similarity=0.439 Sum_probs=56.2
Q ss_pred CCCCceEEEeCc--cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 17 GKLPYPIIADQD--RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 17 ~~l~fpllsD~~--~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
++++||+++|.+ +++++.||+..... |+ +.|++||||++|+|++.+..+...+++..++.++|++
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~g~~~~~~----~~--~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 83 NGLTFPLLSDFWPHGEVAKAYGVFDEDL----GV--AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred cCCCceEecCCCchhHHHHHhCCccccC----CC--ccceEEEECCCCEEEEEEecCCcccccchhHHHHhhC
Confidence 458999999988 99999999975432 33 5689999999999999999999899999999998875
No 83
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.57 E-value=2.2e-07 Score=74.36 Aligned_cols=63 Identities=27% Similarity=0.424 Sum_probs=51.4
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHH
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILR 83 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr 83 (276)
.+++||+++|++++++++||+...... +...+.|++||||++|+|++++. ....+++++|+++
T Consensus 78 ~~~~~~~l~D~~~~~~~~~gv~~~~~~---~~~~~~p~~~lid~~G~v~~~~~-g~~~~~~~~~~~~ 140 (140)
T cd03017 78 YGLPFPLLSDPDGKLAKAYGVWGEKKK---KYMGIERSTFLIDPDGKIVKVWR-KVKPKGHAEEVLE 140 (140)
T ss_pred hCCCceEEECCccHHHHHhCCcccccc---ccCCcceeEEEECCCCEEEEEEe-cCCccchHHHHhC
Confidence 458999999999999999998764321 12225689999999999999996 5669999999874
No 84
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.55 E-value=1.2e-07 Score=72.39 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=40.1
Q ss_pred ccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 176 CSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 176 ~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.+++||+++|.|| ++||++|+..+|.|+++++++. ++.++.|..+
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 3679999999999 9999999999999999999984 5788888665
No 85
>KOG2792|consensus
Probab=98.55 E-value=3.1e-07 Score=80.24 Aligned_cols=101 Identities=16% Similarity=0.305 Sum_probs=76.9
Q ss_pred CCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHhCC-cE--EEEEeCCC----hHHHHHH
Q psy1172 160 PGCSLLGCQASLVILECSIPAFWGILFSHPSDFTP-VCTTELARVLQLIKEFEQRT-CK--VIALSCDS----VESHHDW 231 (276)
Q Consensus 160 PdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp-~C~~el~~l~~~~~~~~~~g-v~--Vv~VS~D~----~~~~~~~ 231 (276)
-+|+|.|.+|+.++-. +|.|||++|+|- -++|| .|..|+..|.+..+++++.- +. =|.||+|+ ++..+++
T Consensus 120 GpF~L~d~~Gk~~te~-df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEK-DFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred CceEEEecCCCeeccc-ccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 6899999999999988 999999999999 77787 69999999999999997653 32 37788876 4555555
Q ss_pred HHHHHhcccCCeeEEEeeCCcchhhhhhhhccccccc
Q psy1172 232 IKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLNT 268 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~~ 268 (276)
.+.+ ...+--|.....++.++++.|.|+...
T Consensus 198 ~~eF------~pkllGLTGT~eqvk~vak~yRVYfs~ 228 (280)
T KOG2792|consen 198 VSEF------HPKLLGLTGTTEQVKQVAKKYRVYFST 228 (280)
T ss_pred HHhc------ChhhhcccCCHHHHHHHHHHhEEeecc
Confidence 5555 333444445555666679999998664
No 86
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.52 E-value=3.5e-07 Score=73.76 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=48.3
Q ss_pred CceEEEeCc-cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC-CCCCCCHHHHHH
Q psy1172 20 PYPIIADQD-RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILR 83 (276)
Q Consensus 20 ~fpllsD~~-~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~-~~~~r~~~eilr 83 (276)
+||+++|+. ++++++||+..+.. |+ +.|++||||++|+|++++..+ ....++++++|+
T Consensus 83 ~~~~l~D~~~~~~~~~~gv~~~~~----~~--~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 83 NVTTLSDFRDHSFGKAYGVLIKDL----GL--LARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred CceEeecCcccHHHHHhCCeeccC----Cc--cceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 799999996 99999999976542 43 579999999999999999844 456778888875
No 87
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.51 E-value=7.2e-07 Score=69.05 Aligned_cols=79 Identities=13% Similarity=0.218 Sum_probs=63.7
Q ss_pred CcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC--------ChHHHHHHH
Q psy1172 161 GCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD--------SVESHHDWI 232 (276)
Q Consensus 161 dF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D--------~~~~~~~~~ 232 (276)
+|++++.+|+.++|+ .|+||+++|+=. |+-|+.-. +...|++++++|+++|++|++.=.+ +.+..+.++
T Consensus 3 df~~~~~~G~~v~l~-~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLS-KYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGG-GGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHH-HcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 689999999999999 999998877777 99999988 9999999999999999999998432 234444444
Q ss_pred HH-HHhcccCCeeEEEe
Q psy1172 233 KA-LVRDCILGLLINLS 248 (276)
Q Consensus 233 ~~-~~~~~~~~~~~~~l 248 (276)
.. + +..|++.
T Consensus 80 ~~~~------~~~F~vf 90 (108)
T PF00255_consen 80 KEKF------GVTFPVF 90 (108)
T ss_dssp CHCH------T-SSEEB
T ss_pred Hhcc------CCcccce
Confidence 44 3 5567776
No 88
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.43 E-value=2.7e-07 Score=82.89 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCCcEEecCC-----CCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 158 LLPGCSLLGCQ-----ASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 158 ~aPdF~L~~~~-----G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++.|.+.... .+...++ +++|+++||+|| ++|||+|..++|.|+++++++ |+.|++||+|.
T Consensus 140 P~~~~a~~~~~~~~~~~~~~~l~-~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~ 206 (271)
T TIGR02740 140 PVSTLALDAHDTTAKKQKDRVMK-DLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG 206 (271)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC
Confidence 45666555432 2345677 789999999999 999999999999999998887 58999999985
No 89
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.39 E-value=8.9e-07 Score=68.73 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+|++++|.|| +.||++|+...|.+.++.+++++.++.+..|+.|..
T Consensus 22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 36899999999 999999999999999999999877888999988753
No 90
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.2e-06 Score=69.58 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=67.7
Q ss_pred CCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--------CChHHHH
Q psy1172 158 LLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--------DSVESHH 229 (276)
Q Consensus 158 ~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--------D~~~~~~ 229 (276)
.+=||++++.+|+.++|+ +|+||.++|+-- |+.|.... |-..|+.+|++|+++|+.|++.-. .+.+..+
T Consensus 4 ~~yd~~~~~~~G~~~~l~-~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLS-DYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHH-HhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 356899999999999999 899997776666 99999887 889999999999999999999844 2345666
Q ss_pred HHHHHHHhcccCCeeEEEee
Q psy1172 230 DWIKALVRDCILGLLINLSV 249 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~ 249 (276)
+|++.. .+..||+++
T Consensus 81 ~fC~~~-----YgVtFp~f~ 95 (162)
T COG0386 81 KFCQLN-----YGVTFPMFS 95 (162)
T ss_pred HHHHhc-----cCceeeeee
Confidence 665544 256788774
No 91
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.26 E-value=2.4e-06 Score=63.98 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
+|++++|+|| ++||++|+...|.|+++++.+.+ .+.++.|+.|...
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~ 56 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQP 56 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCH
Confidence 4789999999 99999999999999999999854 4778888887643
No 92
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.25 E-value=5.6e-06 Score=68.95 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=50.2
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-----CHHHHHHHHHhhcc
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-----NFDEILRVLDSLQL 90 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-----~~~eilr~l~~lq~ 90 (276)
.+++||+++|+++.+++.||+. + .+++||||++|+|++...+....++ +..++.++|+++..
T Consensus 87 ~~~~~~~l~D~~~~~~~~~~v~--------~----~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 87 HGYPFPYLLDETQEVAKAYGAA--------C----TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred CCCCceEEECCchHHHHHcCCC--------c----CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 4588999999999999999985 1 3689999999999988766544332 46889999988763
No 93
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.25 E-value=1.7e-06 Score=66.75 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.|++++|.|| ++|||+|+...|.+.++++.+++.++.+..|..|.
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 4789999999 99999999999999999999987789999998875
No 94
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.23 E-value=5.7e-06 Score=63.00 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=48.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDS-VESHHDWIKALVRDCILGLLINLSVDD 251 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~~~~~~~~~~~l~D~ 251 (276)
.|++++|.|| ++||++|....+.+ .++.+.+.+ ++.++.|+++. .....++.+++.-. ++|..++.+.
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~---~~Pti~~~~~ 81 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVF---GPPTYLFYGP 81 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCC---CCCEEEEECC
Confidence 5789999999 99999999998877 567777755 78999998864 22345666666222 4565555554
No 95
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.23 E-value=2.3e-06 Score=68.94 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=41.1
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCC-----------------CCCCCCcccceEEEECCCCcEEEEEe
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEK-----------------DSKGMPLTCRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~-----------------~~~g~~~~~R~tfiIdp~g~I~~~~~ 69 (276)
.+++||+++|++++++++||+...... ...|.....|++||||++|+|++.++
T Consensus 78 ~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 78 KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 569999999999999999999643210 11122236899999999999999886
No 96
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.22 E-value=1.9e-06 Score=65.26 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+++++|.|| +.||++|+...|.+.++.+++++. +.+..|+.|..
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~ 61 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDD 61 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCcc
Confidence 4689999999 999999999999999999999643 78889998853
No 97
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.20 E-value=2.8e-06 Score=66.73 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=47.5
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH-HHHHHHHHHHhcccCCeeEEEeeCCcchhh
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE-SHHDWIKALVRDCILGLLINLSVDDFKEVE 256 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 256 (276)
.++|+++|.|| ++||++|+...+.+.+..+... ....++.|.+|... .. .+.+... +-.+|.-++.++++...
T Consensus 17 ~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~---~~~~~~~-g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 17 DSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPK---DEEFSPD-GGYIPRILFLDPSGDVH 90 (117)
T ss_pred HcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCch---hhhcccC-CCccceEEEECCCCCCc
Confidence 46899999999 9999999999999998766543 33456666665322 11 1223111 10257677778776643
Q ss_pred h
Q psy1172 257 G 257 (276)
Q Consensus 257 ~ 257 (276)
.
T Consensus 91 ~ 91 (117)
T cd02959 91 P 91 (117)
T ss_pred h
Confidence 3
No 98
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.19 E-value=3.7e-06 Score=64.16 Aligned_cols=45 Identities=9% Similarity=-0.038 Sum_probs=38.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~ 224 (276)
++++++|.|| ++|||+|+..+|.|+++++++++.+ +.+..++.+.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 4578999999 9999999999999999999997655 6666677654
No 99
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.17 E-value=3.9e-06 Score=68.99 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=41.7
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+++++||.|| ++||++|+...|.|+++.+++.+.++.++.|++|..
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~ 91 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF 91 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence 4679999999 999999999999999999999777899999999854
No 100
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.16 E-value=6.5e-06 Score=64.88 Aligned_cols=69 Identities=12% Similarity=0.000 Sum_probs=47.5
Q ss_pred CC-CeEEEEEEcCCCCcccHHHHHHHH---HHHHHHHhCCcEEEEEeCCChH----------HHHHHHHHHHhcccCCee
Q psy1172 179 PA-FWGILFSHPSDFTPVCTTELARVL---QLIKEFEQRTCKVIALSCDSVE----------SHHDWIKALVRDCILGLL 244 (276)
Q Consensus 179 ~g-k~vvL~f~pa~~cp~C~~el~~l~---~~~~~~~~~gv~Vv~VS~D~~~----------~~~~~~~~~~~~~~~~~~ 244 (276)
.| |+++|+|| ++||++|+...+.+. ++.+.++ .++.++.|++|... ...++..++.-. .+|
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~---~~P 86 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR---FTP 86 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc---ccc
Confidence 46 89999999 999999999998875 4555554 46888999987531 123444555211 456
Q ss_pred EEEeeCCc
Q psy1172 245 INLSVDDF 252 (276)
Q Consensus 245 ~~~l~D~~ 252 (276)
..++.+.+
T Consensus 87 t~~~~~~~ 94 (125)
T cd02951 87 TVIFLDPE 94 (125)
T ss_pred EEEEEcCC
Confidence 66676765
No 101
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.13 E-value=5.9e-06 Score=64.59 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
.++++||.|| ++||++|+.-.|.|.++.+++.+. +.++-|++|...
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~ 58 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVP 58 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCH
Confidence 4679999999 999999999999999999998533 688999998643
No 102
>KOG0855|consensus
Probab=98.12 E-value=7.7e-06 Score=67.15 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=59.2
Q ss_pred CCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 13 GEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 13 ~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
|-|+++|||-||||+.+++.+.+|+-..... | ++.|++||.|..|....+....+++.-+++|.+..|.+
T Consensus 141 F~sKqnlPYhLLSDpk~e~ik~lGa~k~p~g---g--~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~~ 210 (211)
T KOG0855|consen 141 FASKQNLPYHLLSDPKNEVIKDLGAPKDPFG---G--LPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLKA 210 (211)
T ss_pred hhhhccCCeeeecCcchhHHHHhCCCCCCCC---C--cccceEEEEecCCeEEEEEecccCccccHHHHHHHHhc
Confidence 4467999999999999999999998643221 3 36899999999999999998889999999999988864
No 103
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.11 E-value=1.1e-05 Score=64.34 Aligned_cols=60 Identities=40% Similarity=0.617 Sum_probs=46.0
Q ss_pred CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHH
Q psy1172 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDE 80 (276)
Q Consensus 18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e 80 (276)
+++||+++|+++.++++||+...... +-..+.|++||||++|+|++++..+.....+.+.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~---~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~~ 138 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSA---GGGLAARATFIIDPDGKIRYVEVEPLPTGRNAEE 138 (140)
T ss_pred CCCceEEECCChHHHHHcCCcccccc---ccCceeEEEEEECCCCcEEEEEecCCCCCcChHh
Confidence 68999999999999999999854321 1112579999999999999999977663334433
No 104
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.09 E-value=8.4e-06 Score=63.69 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
.+++++|.|| +.||++|+..+|.|.++.+++++. +.++.|+.|...
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 4679999999 999999999999999999999654 788899887543
No 105
>KOG0907|consensus
Probab=98.07 E-value=7.8e-06 Score=63.16 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+|.+|+.|+ ++||++|+.-.|.|.++..+|.+ +.++-|++|. ....++.+
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~ 70 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEF 70 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhc
Confidence 3588999999 99999999999999999999955 9999999997 44555555
No 106
>PRK09381 trxA thioredoxin; Provisional
Probab=98.06 E-value=9.4e-06 Score=62.30 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
.+++++|.|| +.|||+|+..+|.|+++++++.+ ++.++.|+.|...
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~ 65 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNP 65 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCCh
Confidence 3679999999 99999999999999999999965 4889999987543
No 107
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.03 E-value=1.2e-05 Score=60.78 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=39.2
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
++|+ ++|.|| +.||++|+...|.+++++++++..++.+..|+.+..
T Consensus 15 ~~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 15 LEGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred hCCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 4566 689999 999999999999999999988766788888887753
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.03 E-value=7.2e-06 Score=64.66 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCCeEEEEEEcC-------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPS-------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa-------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+|++++|.|| | +|||+|+...|.|.++.+++. .++.++-|.+|.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCC
Confidence 5889999999 8 999999999999999999985 358999999975
No 109
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.02 E-value=1e-05 Score=63.86 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=37.2
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEec
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLY 70 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~ 70 (276)
++++||+++|+++++++.||+. ++ +++||||++|+|++++..
T Consensus 83 ~~~~~p~~~D~~~~~~~~~~v~--------~~----P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 83 YGITYPVANDNDYATWRAYGNQ--------YW----PALYLIDPTGNVRHVHFG 124 (126)
T ss_pred cCCCCCEEECCchHHHHHhCCC--------cC----CeEEEECCCCcEEEEEec
Confidence 6799999999999999999974 33 699999999999998864
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.02 E-value=1.4e-05 Score=62.32 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=43.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
++|+|||.|+ ++|||+|+..-|-|.++.+++.+. +.++-|.+|... .+.+.+
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~---dva~~y 64 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP---VYTQYF 64 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH---HHHHhc
Confidence 5899999999 999999999999999999999433 889999998644 344555
No 111
>PHA02278 thioredoxin-like protein
Probab=98.01 E-value=1.3e-05 Score=61.54 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=37.6
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++++||.|| |+||++|+...|.|.++.+++. ..+.++-|++|.
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 5789999999 9999999999999999987753 336788888884
No 112
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.01 E-value=1.2e-05 Score=60.44 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh--CCcEEEEEeCCCh
Q psy1172 181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQ--RTCKVIALSCDSV 225 (276)
Q Consensus 181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~--~gv~Vv~VS~D~~ 225 (276)
++++|.|| +.||++|+..+|.|+++++++++ ..+.++.|+.+..
T Consensus 17 ~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 62 (102)
T cd03005 17 GNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH 62 (102)
T ss_pred CCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 46999999 99999999999999999999976 4688888887754
No 113
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.99 E-value=2e-05 Score=59.82 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=38.9
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+++++|.|| ++||++|+...|.++++.+++. ..+.+..|+.+..
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~ 62 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALK-GKVKVGSVDCQKY 62 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCch
Confidence 3679999999 9999999999999999999984 3478888888753
No 114
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.99 E-value=1.4e-05 Score=62.33 Aligned_cols=45 Identities=40% Similarity=0.715 Sum_probs=38.0
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLS 67 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~ 67 (276)
++++||+++|+++++++.||+..+.. . ...|++||||++|+|+++
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~~-----~-~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEKD-----T-LALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETTT-----S-EESEEEEEEETTSBEEEE
T ss_pred hccccccccCcchHHHHHcCCccccC-----C-ceEeEEEEECCCCEEEeC
Confidence 45999999999999999999976541 1 256999999999999985
No 115
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.98 E-value=1e-05 Score=61.78 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.|++++|.|| ++||++|+...|.|.++++++. ..+.++.|+.|... ..+..+++
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~-~~~~~~~~ 70 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDK-NKPLCGKY 70 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccc-cHHHHHHc
Confidence 4788999999 9999999999999999999985 34888999887532 23445555
No 116
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.97 E-value=1.7e-05 Score=64.37 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+++|||.|| ++||++|+...|.|.++.+++.+. +.|+-|.+|... ++.+.+
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y 73 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMY 73 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHc
Confidence 5789999999 999999999999999999998433 778999999644 344555
No 117
>KOG0910|consensus
Probab=97.93 E-value=1.5e-05 Score=64.69 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=43.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+.||+|.|| |.||.+|+.-.|.|+++..+|+. .+.+.-|++|+.- +..+++
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~---ela~~Y 111 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHP---ELAEDY 111 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccccc---chHhhc
Confidence 4689999999 99999999999999999999943 3899999998643 234555
No 118
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.93 E-value=1.7e-05 Score=59.75 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=38.3
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~ 224 (276)
+++++|+|| ++||++|+..++.+.++.+.+++ ..+.+..|+.+.
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 589999999 99999999999999999999976 457777787764
No 119
>KOG1651|consensus
Probab=97.91 E-value=1.6e-05 Score=65.33 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC 222 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~ 222 (276)
..+=+|+.+|.+|+.++|+ .|+||.+++.=. |+.|..-..+-.+|++++++|+++|+.|++.--
T Consensus 12 ~siydf~~~d~~G~~v~l~-~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLS-QYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred cceeeeEEecCCCCCccHH-HhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 4567999999999999999 999998888877 999999998889999999999999999999843
No 120
>PLN02412 probable glutathione peroxidase
Probab=97.89 E-value=1.5e-05 Score=66.51 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=47.7
Q ss_pred CCCCceEEEe--Ccc-HHHHHhCCCCCCCCCCC--CCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 17 GKLPYPIIAD--QDR-SLAVQLGMLDPVEKDSK--GMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 17 ~~l~fpllsD--~~~-~va~~yG~~~~~~~~~~--g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
++++||+++| +++ .+++.|+.+........ ++. ..|++||||++|+|+..+..+++ .+++.+.|+++
T Consensus 92 ~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~-~~p~tflId~~G~vv~~~~g~~~----~~~l~~~i~~~ 163 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIK-WNFTKFLVSKEGKVVQRYAPTTS----PLKIEKDIQNL 163 (167)
T ss_pred cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcC-CCCeeEEECCCCcEEEEECCCCC----HHHHHHHHHHH
Confidence 5799999984 664 88899987644321111 122 36899999999999999975543 67777777765
No 121
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.88 E-value=3.9e-05 Score=57.71 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+++++++|| +.||+.|+...+.++++.+++.+ ++.++.|+.|..
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~ 56 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED 56 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC
Confidence 4688999999 99999999999999999999854 578888888753
No 122
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.87 E-value=0.00011 Score=62.89 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=81.6
Q ss_pred cCCCCCcEEecCCCCeEEecccCCCCe-EEEEEEc-----CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHH
Q psy1172 156 AALLPGCSLLGCQASLVILECSIPAFW-GILFSHP-----SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH 229 (276)
Q Consensus 156 G~~aPdF~L~~~~G~~v~l~~~~~gk~-vvL~f~p-----a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~ 229 (276)
+..-.+..+.+.+|+ ++|.+.|.|+. +||+.|. ..-||.|...+..++-...-+.++++.+++||-.+.+.+.
T Consensus 43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~ 121 (211)
T PF05988_consen 43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIE 121 (211)
T ss_pred ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHH
Confidence 444556777777876 89998999985 4444443 5789999999999988888899999999999999999999
Q ss_pred HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 230 DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
+|+++. +..||.+|....+ +...|++...
T Consensus 122 afk~rm------GW~~pw~Ss~gs~---Fn~D~~~~~~ 150 (211)
T PF05988_consen 122 AFKRRM------GWTFPWYSSYGSD---FNYDFGVSFD 150 (211)
T ss_pred HHHHhc------CCCceEEEcCCCc---ccccccceec
Confidence 999999 8899999875433 4566777543
No 123
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.86 E-value=4.9e-05 Score=58.25 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=37.7
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-----CcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-----TCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-----gv~Vv~VS~D~~ 225 (276)
.+++++|.|| +.||++|+...|.++++++++++. .+.+..|+.|..
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 3578999999 999999999999999999887542 366777877753
No 124
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.86 E-value=4.5e-05 Score=64.63 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=43.8
Q ss_pred CCCce---EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 18 KLPYP---IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 18 ~l~fp---llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
+..|| ++.|+++.++++||+. |+| .++||||++|+|++....+++.. .+++++..|++|
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~--------~~P---~T~fVIDk~GkVv~~~~G~l~~e-e~e~~~~li~~l 182 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLN--------SED---SAIIVLDKTGKVKFVKEGALSDS-DIQTVISLVNGL 182 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCC--------CCC---ceEEEECCCCcEEEEEeCCCCHH-HHHHHHHHHHHH
Confidence 47787 9999999999999975 443 35599999999999999766422 344455555544
No 125
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.84 E-value=3e-05 Score=58.43 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
++++++|.|| ++||++|+...+.++++.+.+... .+.++.|..+.. ....+.+++
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhC
Confidence 4679999999 999999999999999999999753 356666776642 123444455
No 126
>PTZ00051 thioredoxin; Provisional
Probab=97.83 E-value=5.3e-05 Score=56.70 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=37.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.+++++|+|| ++||++|+...+.|.++.+++ .++.++.|+.+.
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~ 59 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE 59 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence 3679999999 999999999999999999876 457888888764
No 127
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.81 E-value=4.6e-05 Score=66.48 Aligned_cols=106 Identities=11% Similarity=0.079 Sum_probs=74.2
Q ss_pred cccCCCCCcEEecCCCCe-EEecccC-C-CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC------C-
Q psy1172 154 FAAALLPGCSLLGCQASL-VILECSI-P-AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC------D- 223 (276)
Q Consensus 154 ~~G~~aPdF~L~~~~G~~-v~l~~~~-~-gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~------D- 223 (276)
..|..|||+.+.+.+|+. .++. +| + ++|+||+|-.++ ||+-...+..|+++.++|.+. ++++.|-+ |
T Consensus 74 ~~G~~APns~vv~l~g~~~~~il-df~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDg 150 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRIL-DFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDG 150 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHH-HhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCC
Confidence 589999999999999988 8888 56 3 589999999666 999999999999999999764 34444422 1
Q ss_pred -----------ChHHHH---HHHHHHHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 224 -----------SVESHH---DWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 224 -----------~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
.+.+++ ..++...++ ...+|++.|.-.. ...++||..-+
T Consensus 151 W~~~~~~~~i~qh~sledR~~aA~~l~~~---~~~~pi~vD~mdN--~~~~~YgA~Pe 203 (237)
T PF00837_consen 151 WAFGNNPYEIPQHRSLEDRLRAAKLLKEE---FPQCPIVVDTMDN--NFNKAYGALPE 203 (237)
T ss_pred ccCCCCceeecCCCCHHHHHHHHHHHHhh---CCCCCEEEEccCC--HHHHHhCCCcc
Confidence 111111 112223332 3468888886433 45788988654
No 128
>PRK10996 thioredoxin 2; Provisional
Probab=97.80 E-value=5.3e-05 Score=61.21 Aligned_cols=45 Identities=4% Similarity=0.027 Sum_probs=39.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+++++|+|| ++||++|+...+.|.++++++.+ ++.++.|+.|..
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~ 95 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE 95 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC
Confidence 4789999999 99999999999999999998754 588888887754
No 129
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.79 E-value=6.7e-05 Score=56.45 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+++++|.|| ++||++|+...+.+.++.++++. .++.++.|+.+.. ..+..+++
T Consensus 17 ~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~ 71 (105)
T cd02998 17 DKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKY 71 (105)
T ss_pred CCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhC
Confidence 3578999999 99999999999999999999873 4577888877652 23444555
No 130
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.78 E-value=1.5e-05 Score=67.43 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=43.2
Q ss_pred CCCCceEEEe--CccHH-HHHhCCCCCCCC-------CCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 17 GKLPYPIIAD--QDRSL-AVQLGMLDPVEK-------DSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 17 ~~l~fpllsD--~~~~v-a~~yG~~~~~~~-------~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
.+++||+++| .++.. ++.|+++.+... ...+++ ..|++||||++|+|++.+..+.. .+++.+.|+
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP-~~~~tflID~~G~Iv~~~~g~~~----~~~l~~~I~ 178 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIP-WNFAKFLIDGQGKVVKYFSPKVN----PNEMIQDIE 178 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccC-cceEEEEECCCCCEEEEECCCCC----HHHHHHHHH
Confidence 5699999977 56554 566654433221 112454 47899999999999999986554 444555554
Q ss_pred hh
Q psy1172 87 SL 88 (276)
Q Consensus 87 ~l 88 (276)
.|
T Consensus 179 ~l 180 (183)
T PTZ00256 179 KL 180 (183)
T ss_pred HH
Confidence 43
No 131
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.77 E-value=6.9e-05 Score=55.91 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=37.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++++|+|| ++||++|+...+.|.++.+++ ...+.++.|..+.
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 689999999 999999999999999999887 4567888876653
No 132
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.76 E-value=4.9e-05 Score=62.16 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCCCceEEEeC---ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 17 GKLPYPIIADQ---DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 17 ~~l~fpllsD~---~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
++++||+++|. +.....+|+...... .+++--.|++||||++|+|++.+.++.+ .+++.+.|+.|
T Consensus 85 ~~~~fp~~~d~~~~~~~~~~~~~~~~~~~---~~~p~~~~~tflID~~G~v~~~~~g~~~----~~~l~~~i~~l 152 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSEAEPAFRFLVDSS---KKEPRWNFWKYLVNPEGQVVKFWRPEEP----VEEIRPEITAL 152 (153)
T ss_pred cCCCCCccceEecCCCCCCcHHHHHHhcC---CCCCCCccEEEEEcCCCcEEEEECCCCC----HHHHHHHHHHh
Confidence 46999999982 333433333221110 1233226899999999999999986654 67777777654
No 133
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.73 E-value=6.8e-05 Score=56.11 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=38.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~VS~D~ 224 (276)
++++++|.|| ++||+.|+...+.++++.+.++..+ +.++.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 57 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA 57 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc
Confidence 6889999999 9999999999999999999997654 6666666653
No 134
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.69 E-value=0.0001 Score=55.10 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=43.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.++++||.|| +.||++|....|.|+++.+++.+ ++.++-|..+.. +...+++
T Consensus 16 ~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~ 67 (103)
T PF00085_consen 16 SDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKY 67 (103)
T ss_dssp TSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHT
T ss_pred cCCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhcc
Confidence 3689999999 99999999999999999999976 888988888743 3445555
No 135
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.68 E-value=0.00015 Score=56.44 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-C-cEEEEEeCCChHHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-T-CKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-g-v~Vv~VS~D~~~~~~~~~~~~ 235 (276)
+++++|.|| ++||++|+..++.++++.++|++. + +.+..|+.+.. ......+++
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~ 74 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDF 74 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhC
Confidence 469999999 999999999999999999998653 2 56666665322 223444444
No 136
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.67 E-value=7e-05 Score=71.97 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+++++||.|| +.||++|+...|.|.++.++|++.++.|+.|+.|..
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 6789999999 999999999999999999999877889999998853
No 137
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.63 E-value=0.00015 Score=54.57 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=37.6
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+++++|.|| +.||++|+...|.|.++++++.. .+.++.+..+..
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~ 61 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH 61 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence 467999999 99999999999999999998854 478888887753
No 138
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.61 E-value=0.00019 Score=57.75 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=41.2
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~ 73 (276)
.+++||++.|++++++++||+....... .| +..+.+||||++|+|+++...+..
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~--~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPG-NG--FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTT-TT--SSSSEEEEEETTSBEEEEEESSBT
T ss_pred hCCCceEEechHHHHHHHhCCccccccc-cC--CeecEEEEEECCCEEEEEEeCCCC
Confidence 4589999999999999999974221111 12 235799999999999999996554
No 139
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.59 E-value=0.00017 Score=53.72 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=39.8
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.++++++++.|| +.|||+|...+|.|.++.+++.. .+.++.++..
T Consensus 29 ~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 29 ELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred hcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 455889999999 99999999999999999999865 6888888885
No 140
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.59 E-value=0.00029 Score=59.55 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=43.1
Q ss_pred CCCCceE-EEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 17 GKLPYPI-IADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 17 ~~l~fpl-lsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
++++||+ +.|+++++++.||+. |+ +++||||++|+|++.+..+++ .+++-+.|+.|
T Consensus 119 ~~~~~~~~~~D~~~~~~~~~gv~--------~~----P~t~vid~~G~i~~~~~G~~~----~~~l~~~i~~~ 175 (185)
T PRK15412 119 LGNPYALSLFDGDGMLGLDLGVY--------GA----PETFLIDGNGIIRYRHAGDLN----PRVWESEIKPL 175 (185)
T ss_pred cCCCCceEEEcCCccHHHhcCCC--------cC----CeEEEECCCceEEEEEecCCC----HHHHHHHHHHH
Confidence 4589994 899999999999975 33 589999999999999987664 44444444443
No 141
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.59 E-value=0.00019 Score=59.97 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
++++|| ++.|++++++++||+. |+ +++|+||++|+|++.+...++ .+++...|+.
T Consensus 114 ~~~~f~~v~~D~~~~~~~~~~v~--------~~----P~~~~id~~G~i~~~~~G~~~----~~~l~~~l~~ 169 (173)
T TIGR00385 114 LGNPYQAILIDPNGKLGLDLGVY--------GA----PETFLVDGNGVILYRHAGPLN----NEVWTEGFLP 169 (173)
T ss_pred cCCCCceEEECCCCchHHhcCCe--------eC----CeEEEEcCCceEEEEEeccCC----HHHHHHHHHH
Confidence 458898 6789999999999985 33 699999999999999885443 5565555554
No 142
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.58 E-value=0.0002 Score=56.66 Aligned_cols=41 Identities=7% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.|+.++|+|+ ++|||+|+.-.|.|.++.++ .+..|+-|++|
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd 62 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE 62 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence 3677899999 99999999999999999887 44779999887
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.0004 Score=57.42 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=45.7
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.+++||++.|.++.+++.||+. + .+++||||++|+|+..+.... +.+++.+.|+++.
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~--------~----~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l~~~~ 172 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVG--------P----LPTTFLIDKDGKVVKVITGEM----TEEQLEEYLEKIK 172 (173)
T ss_pred hCCCceEEECCcchHHHHcCCC--------C----cCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHhc
Confidence 4589999999999999999984 2 369999999999998876544 3677777776653
No 144
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.54 E-value=0.00019 Score=55.64 Aligned_cols=49 Identities=10% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
+++++|.|| +.||++|+...|.|+++.+++. ++.++-|+.+.. ...+++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~ 72 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYL 72 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhc
Confidence 579999999 9999999999999999999884 577888877643 445555
No 145
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.53 E-value=0.00022 Score=53.04 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+++++|.|| +.||++|+...+.|+++.+++. ..+.++.|..+..
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~ 57 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDEN 57 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCC
Confidence 569999999 9999999999999999998885 3588999988754
No 146
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.50 E-value=0.00028 Score=52.06 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH-hCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFE-QRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~-~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
++++++|.|| +.||++|+...+.+.+..+.++ ..++.++.|+.+. .....+++
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~ 67 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEY 67 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhC
Confidence 4558999999 9999999999999999999985 4568888888765 23444555
No 147
>PLN02309 5'-adenylylsulfate reductase
Probab=97.43 E-value=0.00023 Score=68.39 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.++++||.|| +.||++|+...|.|.++.++|...++.|+.|+.|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 5789999999 9999999999999999999998888999999988
No 148
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00024 Score=63.81 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+-+|||+.|| +.||++|..-+|.|.++..+++.+ +.+.-|++|..
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~~ 86 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDAE 86 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCcc
Confidence 4579999999 999999999999999999998543 77778888853
No 149
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.42 E-value=0.00046 Score=53.73 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=38.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+++++|.|| +.||++|+...|.|.++.+++ .++.++-|..|..
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~ 64 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKA 64 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccC
Confidence 3578999999 999999999999999999887 4588888888754
No 150
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.41 E-value=0.00027 Score=61.75 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=35.9
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++++|.|| +.||++|+...|.++++++++++ .+.+..|..+.
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~ 94 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR 94 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc
Confidence 578999999 99999999999999999999864 36666666553
No 151
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.40 E-value=0.00026 Score=54.26 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=33.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHH--HHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIK--EFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~--~~~~~gv~Vv~VS~D~~~ 226 (276)
.||++|++|| ..|||+|++..+.+.+..+ .+-..++.++.++.++..
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR 52 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence 5899999999 9999999988777775433 111336889999987654
No 152
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.38 E-value=0.00019 Score=57.33 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCCCceEEEeCc---cHHHHHhCCCCCCCCC---CCCCCcccceEEEECCCCcEEEEEe
Q psy1172 17 GKLPYPIIADQD---RSLAVQLGMLDPVEKD---SKGMPLTCRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 17 ~~l~fpllsD~~---~~va~~yG~~~~~~~~---~~g~~~~~R~tfiIdp~g~I~~~~~ 69 (276)
++++||+++|++ +++++.||+....... ..++. ..|++|||||+|+|++++.
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 84 FGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVD-HSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred hCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEe-ccceEEEECCCCCEEEeec
Confidence 458999999975 7999999987532110 11222 3689999999999999875
No 153
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.33 E-value=0.0011 Score=52.61 Aligned_cols=74 Identities=8% Similarity=-0.071 Sum_probs=44.7
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHH-HH--HHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHHHhc-ccCCeeEEEeeCCcc
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELAR-VL--QLIKEFEQRTCKVIALSCDS-VESHHDWIKALVRD-CILGLLINLSVDDFK 253 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~-l~--~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~~~~-~~~~~~~~~l~D~~~ 253 (276)
.+|+|+|.|+ ++||++|+.--.. +. ++.+.+ .+++.+|-|..+. ++..+.+.+...+. +..+.|..++.++++
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 5899999999 9999999966542 22 233333 3457777776653 33333333322111 122678888888876
Q ss_pred h
Q psy1172 254 E 254 (276)
Q Consensus 254 ~ 254 (276)
.
T Consensus 92 ~ 92 (124)
T cd02955 92 K 92 (124)
T ss_pred C
Confidence 5
No 154
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.33 E-value=0.00063 Score=52.91 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=35.2
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
++.++++|| ++|||+|+.-.+.|.++.+++ ..++++-|+.|..
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~ 64 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED 64 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC
Confidence 456777777 999999999999999988876 4588888888753
No 155
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.32 E-value=0.00073 Score=48.67 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++++|.|| +.||+.|....+.++++.++ ..++.++.|+.+.
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 378999999 99999999999999998887 5778999999876
No 156
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.32 E-value=0.00053 Score=53.32 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=41.6
Q ss_pred CCCeEEEEEEcCCC--CcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDF--TPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~--cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.|+++||.|| +.| ||.|....|.|.++.++|.++ +.++-|+.|... +.+.++
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~---~la~~f 79 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ---ALAARF 79 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH---HHHHHc
Confidence 5688999999 886 999999999999999998544 678888887643 334555
No 157
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.30 E-value=0.00063 Score=67.42 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=49.6
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEEEeCCCh-HHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIALSCDSV-ESHHDWIKALVRDCILGLLINLSVDDFK 253 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~VS~D~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 253 (276)
.+||+|+|+|| ++||++|+...+.. .+..+++ +++.++-|+++.. ...+++.+++.-. ++|.-++.|.++
T Consensus 472 ~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l--~~~~~v~vDvt~~~~~~~~l~~~~~v~---g~Pt~~~~~~~G 545 (571)
T PRK00293 472 GKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQAL--ADTVLLQADVTANNAEDVALLKHYNVL---GLPTILFFDAQG 545 (571)
T ss_pred hcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHh--cCCEEEEEECCCCChhhHHHHHHcCCC---CCCEEEEECCCC
Confidence 45899999999 99999999876653 4555666 3578888887643 3445666666322 567667777665
Q ss_pred h
Q psy1172 254 E 254 (276)
Q Consensus 254 ~ 254 (276)
.
T Consensus 546 ~ 546 (571)
T PRK00293 546 Q 546 (571)
T ss_pred C
Confidence 4
No 158
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.19 E-value=0.0015 Score=42.81 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
++.|| ++||+.|.+..+.+.+. ++...++.++.++.+.......+
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 46788 99999999999999988 56678899999999876655444
No 159
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.18 E-value=0.00083 Score=56.48 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+++|||.|| +.||++|..-.|.|.++.++| ..+.++-|+.+.
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~--~~vkF~kVd~d~ 124 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEY--PAVKFCKIRASA 124 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHC--CCeEEEEEeccc
Confidence 459999999 999999999999999999988 458888888875
No 160
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.15 E-value=0.0014 Score=47.04 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 183 vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.|..|| +.|||+|....+.|+++.+++.. .+.++-|+.+.
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~ 41 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME 41 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc
Confidence 466788 99999999999999999998853 37888888764
No 161
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.12 E-value=0.0014 Score=51.41 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=37.1
Q ss_pred CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172 17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~ 73 (276)
.+++|| ++.|.++++++.||+. ++ +++||||++|+|+..+...++
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~--------~~----P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVY--------GV----PETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred cCCCCceEEECCcchHHHhcCCC--------CC----CeEEEECCCceEEEEEeccCC
Confidence 457785 6799999999999986 33 689999999999999886544
No 162
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.10 E-value=0.00048 Score=56.20 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCCCceEEEeC--ccH-HHHHhCCCCCCCCCC--CCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172 17 GKLPYPIIADQ--DRS-LAVQLGMLDPVEKDS--KGMPLTCRAVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 17 ~~l~fpllsD~--~~~-va~~yG~~~~~~~~~--~g~~~~~R~tfiIdp~g~I~~~~~~~~~ 73 (276)
.+++||+++|. ++. +++.||++......- ..+. ..|++||||++|+|++.+..+++
T Consensus 84 ~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 84 YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIK-WNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccc-cccEEEEECCCCcEEEEECCCCC
Confidence 46999999974 444 577777532111000 0011 25799999999999999986654
No 163
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.06 E-value=0.0031 Score=45.91 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHH--HHHHHHhCCcEEEEEeCCChHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQ--LIKEFEQRTCKVIALSCDSVESHH 229 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~--~~~~~~~~gv~Vv~VS~D~~~~~~ 229 (276)
.||+++|.|+ ++||+.|+..-..+.. ...++-.+++..+-|..++.....
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~ 67 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA 67 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH
Confidence 5899999999 9999999988766522 223322467888888887765433
No 164
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.99 E-value=0.0016 Score=48.94 Aligned_cols=51 Identities=8% Similarity=0.058 Sum_probs=41.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
|+++++.|+ +.||++|..-.+.|.++.++|+++ +.++-|+.|.- ....+.+
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~---~~~~~~~ 62 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF---GRHLEYF 62 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh---HHHHHHc
Confidence 789999999 999999999999999999999744 77777777642 2345555
No 165
>PTZ00102 disulphide isomerase; Provisional
Probab=96.95 E-value=0.0013 Score=63.24 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=37.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC-cEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT-CKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g-v~Vv~VS~D~ 224 (276)
.|++++|.|| +.||++|+...|.|+++.+.+++.+ +.+..|+.+.
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~ 419 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA 419 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 4789999999 9999999999999999999987644 5566677654
No 166
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.94 E-value=0.0038 Score=48.46 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHH
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILR 83 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr 83 (276)
++++||++.|+++++++.||+. + .+++||||++| |++....-.+ .++|.+
T Consensus 71 ~~~~~~~~~d~~~~~~~~~~i~--------~----~P~~~vid~~g-i~~~~~g~~~----~~~~~~ 120 (123)
T cd03011 71 KGYGFPVINDPDGVISARWGVS--------V----TPAIVIVDPGG-IVFVTTGVTS----EWGLRL 120 (123)
T ss_pred cCCCccEEECCCcHHHHhCCCC--------c----ccEEEEEcCCC-eEEEEeccCC----HHHHHh
Confidence 4589999999999999999974 2 36999999999 8888764333 455543
No 167
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.93 E-value=0.0018 Score=61.64 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=38.6
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~ 224 (276)
++++++|.|| +.||++|...+|.+.++++.+++.+ +.++.|..+.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 63 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE 63 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC
Confidence 4678999999 9999999999999999999998776 7777777664
No 168
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0031 Score=54.24 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=75.4
Q ss_pred CcEEecCCCCeEEecccCCCCeEEEE---EE-c--CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 161 GCSLLGCQASLVILECSIPAFWGILF---SH-P--SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 161 dF~L~~~~G~~v~l~~~~~gk~vvL~---f~-p--a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
+.-+.+.+| +.+|++.|+|+--+|+ +| | ..-||.|..-+..+.-...-++.+++.+++||--+.+.+.+++.+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~r 132 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRR 132 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHh
Confidence 344445566 5788888999854443 22 2 457999999999998888889999999999999999999999999
Q ss_pred HHhcccCCeeEEEeeCCcchhhhhhhhcccccc
Q psy1172 235 LVRDCILGLLINLSVDDFKEVEGRSRRFQESLN 267 (276)
Q Consensus 235 ~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~~ 267 (276)
. +..|+..|..+.+ +-+.|+++..
T Consensus 133 m------GW~f~w~Ss~~s~---Fn~Df~vsf~ 156 (247)
T COG4312 133 M------GWQFPWVSSTDSD---FNRDFQVSFT 156 (247)
T ss_pred c------CCcceeEeccCcc---cccccccccc
Confidence 9 8899999886554 5667766433
No 169
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.87 E-value=0.0019 Score=55.22 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
++++|||.|| ++||++|+.-.+.|.+++.+| ..+.++-|+++.
T Consensus 101 ~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~--~~vkFvkI~ad~ 143 (192)
T cd02988 101 KDTWVVVHLY-KDGIPLCRLLNQHLSELARKF--PDTKFVKIISTQ 143 (192)
T ss_pred CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHC--CCCEEEEEEhHH
Confidence 3569999999 999999999999999999998 458888888763
No 170
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.82 E-value=0.0019 Score=56.12 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=39.0
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.+.+++.+++|| .+.||.|..+.|.|+.+.+++ |+.|+.||+|.
T Consensus 117 ~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG 160 (215)
T PF13728_consen 117 QLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG 160 (215)
T ss_pred HHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence 566889999999 556999999999999998886 89999999984
No 171
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.80 E-value=0.003 Score=49.85 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCCCcc--cH--HHHHHHHHHHHHH-HhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 181 FWGILFSHPSDFTPV--CT--TELARVLQLIKEF-EQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 181 k~vvL~f~pa~~cp~--C~--~el~~l~~~~~~~-~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.++|++|| +.||++ |+ .-.|.|.+...++ ++.++.++-|++|... ..++++
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~ 83 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKL 83 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHc
Confidence 46666666 999988 99 5566677776665 4567999999998643 334455
No 172
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.78 E-value=0.0021 Score=56.58 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=43.4
Q ss_pred CCCCceEEEe--Ccc-HHHHHhCCCCCCCCCCCCC-CcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 17 GKLPYPIIAD--QDR-SLAVQLGMLDPVEKDSKGM-PLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 17 ~~l~fpllsD--~~~-~va~~yG~~~~~~~~~~g~-~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.+++||+++| .++ .++..|+.+.....+..|- ....+.+||||++|+|++.+..++ +.+++.+.|+.|.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHh
Confidence 5699999965 445 6777776542111000010 012468999999999999987544 4667777777653
No 173
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.75 E-value=0.0029 Score=53.71 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
++++||.+. .++++++.||+. ++ +.+||||++|+|++. ......++++++++.++
T Consensus 125 ~~~~~~~~~-~~~~i~~~y~v~--------~~----P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 125 HELGGERYV-VSAEIGMAFQVG--------KI----PYGVLLDQDGKIRAK--GLTNTREHLESLLEADR 179 (189)
T ss_pred cCCCcceee-chhHHHHhccCC--------cc----ceEEEECCCCeEEEc--cCCCCHHHHHHHHHHHH
Confidence 457777665 578999999873 33 588999999999985 34444456777776664
No 174
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.72 E-value=0.0028 Score=60.32 Aligned_cols=46 Identities=4% Similarity=0.023 Sum_probs=40.0
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~~ 225 (276)
.++.++|.|| +.||++|....|.++++.+.++.. ++.++.|+.+..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 4788999999 999999999999999999999873 688888887643
No 175
>KOG0908|consensus
Probab=96.64 E-value=0.0022 Score=56.27 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.+|.|++.|. ++||.+|....|.|+++..+| .|..++-|.+|.
T Consensus 20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd~ 62 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVDE 62 (288)
T ss_pred CceEEEEEEE-ecccchHHhhhhHHHHhhhhC--cccEEEEEeHHH
Confidence 5688999999 999999999999999999999 778888887763
No 176
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.61 E-value=0.0025 Score=56.50 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=38.5
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.+..++.+++||+ +.||.|..+.|.|+.+.+++ |+.|++||+|.
T Consensus 140 ~la~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG 183 (248)
T PRK13703 140 KLAEHYGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG 183 (248)
T ss_pred HHHhcceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 5667899999995 56999999999999988875 79999999984
No 177
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.58 E-value=0.0065 Score=43.70 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVES 227 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~ 227 (276)
.+.|| ++|||+|..-.|.+.++.+++.. .+.+ +.+|+...
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~--~~v~~~~~ 41 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELGI-DAEF--EKVTDMNE 41 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEE--EEeCCHHH
Confidence 36789 89999999999999999988642 2444 55555443
No 178
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.54 E-value=0.0031 Score=56.13 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=39.0
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.+..++.+++||+ +.||.|....|.|+.+.++| |+.|++||+|..
T Consensus 147 ~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~ 191 (256)
T TIGR02739 147 QLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGT 191 (256)
T ss_pred HHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence 5667899999995 66999999999999988875 799999999853
No 179
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.53 E-value=0.0069 Score=45.26 Aligned_cols=41 Identities=27% Similarity=0.534 Sum_probs=34.9
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEe
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~ 69 (276)
.+++||++.|.+.++++.||+. + .+.+||+||+|+|++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~--------~----~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 75 YGITFPVLLDPDGELAKAYGVR--------G----LPTTFLIDRDGRIRARHV 115 (116)
T ss_pred cCCCcceEEcCcchHHHhcCcC--------c----cceEEEECCCCcEEEEec
Confidence 4589999999999999999985 2 358999999999987753
No 180
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.51 E-value=0.0084 Score=41.50 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
|..|+ +.|||+|..-.+.|+++.++. .++.+.-+++|..
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~ 41 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEF 41 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccC
Confidence 66777 999999999988888876543 4688888887653
No 181
>PTZ00102 disulphide isomerase; Provisional
Probab=96.47 E-value=0.0036 Score=60.24 Aligned_cols=44 Identities=5% Similarity=0.016 Sum_probs=36.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCD 223 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D 223 (276)
+++.++|.|| +.||++|++..|.+.++.+.++..+ +.+.-|..+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~ 93 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT 93 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 4678999999 9999999999999999999887655 555555544
No 182
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.45 E-value=0.0058 Score=47.32 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcchhhhhhhhccccc
Q psy1172 203 VLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKEVEGRSRRFQESL 266 (276)
Q Consensus 203 l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~a~~ygv~~ 266 (276)
|.+..+++++.|+.+|+|+.++++..++|++.. +.++++++|++. ++.+++|+..
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~------~~p~~ly~D~~~---~lY~~lg~~~ 56 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT------GFPFPLYVDPER---KLYKALGLKR 56 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc------CCCCcEEEeCcH---HHHHHhCCcc
Confidence 567788999999999999999997799999777 789999999754 4677777754
No 183
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.41 E-value=0.017 Score=49.54 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=38.9
Q ss_pred CCCCceEEEeC------ccHHHHH--------hCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHH
Q psy1172 17 GKLPYPIIADQ------DRSLAVQ--------LGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEIL 82 (276)
Q Consensus 17 ~~l~fpllsD~------~~~va~~--------yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eil 82 (276)
++++||+++|. .+.+.+. |+.... ..+++ ..+++||||++|+|+..+..+. +.+++.
T Consensus 101 ~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~----~~~i~-~~~~tflID~~G~iv~~~~g~~----~~~~l~ 171 (199)
T PTZ00056 101 NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGT----LKAIG-WNFGKFLVNKSGNVVAYFSPRT----EPLELE 171 (199)
T ss_pred cCCCceeeeeeeccCCccCHHHHHHHHhCccccccccc----CCccC-CCCEEEEECCCCcEEEEeCCCC----CHHHHH
Confidence 56999999972 3333332 332110 01232 2358999999999998776433 456677
Q ss_pred HHHHhhc
Q psy1172 83 RVLDSLQ 89 (276)
Q Consensus 83 r~l~~lq 89 (276)
+.|+.|-
T Consensus 172 ~~I~~ll 178 (199)
T PTZ00056 172 KKIAELL 178 (199)
T ss_pred HHHHHHH
Confidence 7776654
No 184
>PTZ00062 glutaredoxin; Provisional
Probab=96.38 E-value=0.006 Score=52.57 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
+.+||+|| +.|||+|+.-.+-|.++.++| ..+.++-|+.|
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~--~~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDF--PSLEFYVVNLA 57 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHC--CCcEEEEEccc
Confidence 56788888 999999999999999999988 45777777665
No 185
>KOG4498|consensus
Probab=96.32 E-value=0.01 Score=49.95 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=75.5
Q ss_pred hcccCCCCcccccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172 142 LQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS 221 (276)
Q Consensus 142 ~~~a~~~~~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS 221 (276)
+.++.....+++.+|+..-++ +..|+.+.+.+.++.+..++.|.+---|--|+++..+|.++-.-++..|+.+|+|.
T Consensus 15 ~~s~i~pa~sgp~~~q~~a~l---~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 15 IASTIVPARSGPMIGQLPANL---DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred HHhhcccccCCccccccchhh---hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 344555566677777765553 55788888887788889999999999999999999999999777889999999998
Q ss_pred CCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172 222 CDSVESHHDWIKALVRDCILGLLINLSVDDFK 253 (276)
Q Consensus 222 ~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 253 (276)
..+....+.+.++- .+.=.+..|++.
T Consensus 92 ~g~~~~~~~f~~q~------~f~gevylD~~~ 117 (197)
T KOG4498|consen 92 PGSHVQFEDFWDQT------YFSGEVYLDPHR 117 (197)
T ss_pred ccceeecchhhccc------CcceeEEEcCcc
Confidence 76655444444333 223345556544
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.21 E-value=0.057 Score=46.64 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.+|+.|| +.|||+|..-.+.++++..+. ..+.+.-|..+.
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~ 174 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAN--DKILGEMIEANE 174 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCC
Confidence 3555588 999999997777776665542 346666666654
No 187
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.19 E-value=0.023 Score=48.06 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=42.9
Q ss_pred CCCceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEE-EEecCCCCCCCHHHHHHHHHhhc
Q psy1172 18 KLPYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRL-SFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 18 ~l~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~-~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.+.||++.| ..+.+.+.||.+.. + ..++||||++|+|++ ++...++ .+++.+.|+.+.
T Consensus 112 ~~~fPv~~dd~~~~~~~~~g~~~~------~----iPttfLId~~G~i~~~~~~G~~~----~~~L~~~I~~ll 171 (181)
T PRK13728 112 DTAFPEALPAPPDVMQTFFPNIPV------A----TPTTFLVNVNTLEALPLLQGATD----AAGFMARMDTVL 171 (181)
T ss_pred CCCCceEecCchhHHHHHhCCCCC------C----CCeEEEEeCCCcEEEEEEECCCC----HHHHHHHHHHHH
Confidence 589999996 67788889996311 3 369999999999964 6665554 667777776654
No 188
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.15 E-value=0.013 Score=46.89 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=39.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHH--HHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQ--LIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFKE 254 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~--~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~ 254 (276)
.+|+++|+|+ ++||++|++--..+-+ -..++-++++.+|-+..|..+.... . .+..+|.-+..|+++.
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~------~-~g~~vPtivFld~~g~ 91 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS------P-DGQYVPRIMFVDPSLT 91 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC------c-cCcccCeEEEECCCCC
Confidence 5899999999 9999999987665422 2233333445444444442210000 0 1225676677787765
No 189
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=95.88 E-value=0.028 Score=55.05 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=44.1
Q ss_pred CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.||++.|.++++++.||+. ++ +++||||++|+|+......++ .+++...|+...
T Consensus 120 ~~pV~~D~~~~lak~fgV~--------gi----PTt~IIDkdGkIV~~~~G~~~----~eeL~a~Ie~~~ 173 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNIS--------VY----PSWAIIGKDGDVQRIVKGSIS----EAQALALIRNPN 173 (521)
T ss_pred ccceeccccHHHHHHcCCC--------Cc----CeEEEEcCCCeEEEEEeCCCC----HHHHHHHHHHhh
Confidence 5799999999999999984 44 599999999999999986654 677777776433
No 190
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.63 E-value=0.055 Score=37.30 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL 235 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~ 235 (276)
+..|+ ++|||+|....+.|.+ .++.+.-++++. ++..+++.+.+
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVL 46 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHh
Confidence 44566 9999999987766653 678888888864 33444555555
No 191
>PHA02125 thioredoxin-like protein
Probab=95.62 E-value=0.029 Score=40.06 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
|+.|| ++||++|+.-.|.|.++ .+.++-|+.|.. .+..+++
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~-------~~~~~~vd~~~~---~~l~~~~ 42 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANV-------EYTYVDVDTDEG---VELTAKH 42 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHH-------hheEEeeeCCCC---HHHHHHc
Confidence 67888 99999999988887643 134566665542 2344555
No 192
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.62 E-value=0.021 Score=49.37 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=32.9
Q ss_pred CCCCeEEEEEEc--CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 178 IPAFWGILFSHP--SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 178 ~~gk~vvL~f~p--a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.++...++.|+- +.|||+|....|.|.++.+++. ++++..+++|
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 455556767773 3999999999999999998883 4555566665
No 193
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.43 E-value=0.039 Score=43.44 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=34.1
Q ss_pred CCCeEEEEEEcC------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 179 PAFWGILFSHPS------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 179 ~gk~vvL~f~pa------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
.|++++|.|+-+ +|||.|+...|.+++.... ...+..+|-|.+.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDR 69 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCH
Confidence 568899999832 5999999999999998887 345788888888765
No 194
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=95.43 E-value=0.064 Score=41.39 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=39.9
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCC-------------------------CC-CCCCcccceEEEECCCCcEEEEEe
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEK-------------------------DS-KGMPLTCRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~-------------------------~~-~g~~~~~R~tfiIdp~g~I~~~~~ 69 (276)
...+|||.+|+++++-+++||-..... +. .|-....=++||+|++|+|++.+.
T Consensus 34 ~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 34 TGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred cCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 569999999999999999998752110 11 233334568999999999999886
No 195
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.32 E-value=0.024 Score=46.23 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=27.2
Q ss_pred eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172 22 PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF 68 (276)
Q Consensus 22 pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~ 68 (276)
|+..+.+++++++||+. |+ +++||||++|+|+...
T Consensus 95 p~~~~~~~~l~~~y~v~--------~i----Pt~vlId~~G~Vv~~~ 129 (146)
T cd03008 95 PFEDEFRRELEAQFSVE--------EL----PTVVVLKPDGDVLAAN 129 (146)
T ss_pred cccchHHHHHHHHcCCC--------CC----CEEEEECCCCcEEeeC
Confidence 44555567999999974 44 5999999999998753
No 196
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.21 E-value=0.04 Score=41.97 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCCC-ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy1172 17 GKLP-YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLS 67 (276)
Q Consensus 17 ~~l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~ 67 (276)
.++. ||++.| ..++++||+. + .+++||||++|+|++.
T Consensus 74 ~~~~~~p~~~~--~~~~~~~~~~--------~----~P~~~vid~~G~v~~~ 111 (114)
T cd02967 74 HGLEAFPYVLS--AELGMAYQVS--------K----LPYAVLLDEAGVIAAK 111 (114)
T ss_pred hCCCCCcEEec--HHHHhhcCCC--------C----cCeEEEECCCCeEEec
Confidence 4464 888874 5688888873 2 4799999999999875
No 197
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.14 E-value=0.1 Score=40.13 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=43.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHH-H--HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELAR-V--LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDD 251 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~-l--~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 251 (276)
++|+++|+|+ ++||++|..-... | .+..+.+ +..+..+.+.+++++ ..++...+... ++|.-++.|+
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l-~~~~v~~~~d~~~~e-~~~~~~~~~~~---~~P~~~~i~~ 85 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFI-RENFIFWQCDIDSSE-GQRFLQSYKVD---KYPHIAIIDP 85 (114)
T ss_pred hCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHH-HhCEEEEEecCCCcc-HHHHHHHhCcc---CCCeEEEEeC
Confidence 5799999999 9999999875432 2 1233333 335667777776654 34666666433 5566666665
No 198
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.14 E-value=0.064 Score=39.83 Aligned_cols=46 Identities=4% Similarity=-0.169 Sum_probs=34.8
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
++++..-+..|+ +.||++|..-.+.++++.+++ .++.+..+..|..
T Consensus 9 ~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~ 54 (89)
T cd03026 9 RLNGPINFETYV-SLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALF 54 (89)
T ss_pred hcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhC
Confidence 566555666666 999999999888888888765 3588888877643
No 199
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.00 E-value=0.1 Score=36.55 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+..|| ++|||+|++..+.|.+ .|+..-.|+++......++.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~~~~~~~ 42 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDEGAADRV 42 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcCCHhHHHHH
Confidence 56778 9999999998776654 45555566666443333443
No 200
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.98 E-value=0.062 Score=57.17 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 17 GKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
.+++||++.|.++++++.||+. |+ +++||||++|+|+..+..+. +.+++.+.|+++
T Consensus 480 ~~i~~pvv~D~~~~~~~~~~V~--------~i----Pt~ilid~~G~iv~~~~G~~----~~~~l~~~l~~~ 535 (1057)
T PLN02919 480 YNISHPVVNDGDMYLWRELGVS--------SW----PTFAVVSPNGKLIAQLSGEG----HRKDLDDLVEAA 535 (1057)
T ss_pred hCCCccEEECCchHHHHhcCCC--------cc----ceEEEECCCCeEEEEEeccc----CHHHHHHHHHHH
Confidence 5699999999999999999974 44 59999999999998876433 345555555543
No 201
>KOG0190|consensus
Probab=94.79 E-value=0.034 Score=53.74 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=32.2
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT 214 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g 214 (276)
.+|-|+|-|| +.||++|.+-.|.++++.+.|++..
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~~ 417 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDDE 417 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCCC
Confidence 4688999999 9999999999999999999998853
No 202
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.03 Score=45.55 Aligned_cols=49 Identities=29% Similarity=0.425 Sum_probs=36.8
Q ss_pred CCC-ceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEe
Q psy1172 18 KLP-YPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 18 ~l~-fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~ 69 (276)
+|. --.+|| .++...++||++..+- .-.|+ ..|++||+|.+|+|.++..
T Consensus 98 Gi~nv~~lSd~r~~~Fge~yGv~I~eg-pL~gL--lARaV~V~De~g~V~y~el 148 (158)
T COG2077 98 GIENVITLSDFRDRAFGENYGVLINEG-PLAGL--LARAVFVLDENGKVTYSEL 148 (158)
T ss_pred CcccceEhhhhhhhhhhHhhCEEeccc-cccCe--eeeEEEEEcCCCcEEEEEc
Confidence 344 567899 4667889999986431 11244 5799999999999999987
No 203
>smart00594 UAS UAS domain.
Probab=94.51 E-value=0.19 Score=39.37 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=45.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHH---HHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVL---QLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFK 253 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~---~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 253 (276)
.+|+++|+|+ +.||+.|..-....- +..+.+ ++++-++.+++++.+. .++.+.+.-. ++|+-.+.++.+
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~---~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLD---SFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcC---CCCEEEEEecCC
Confidence 5789999999 999999998765422 122333 4467777777777654 4667777333 556666656543
No 204
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.11 E-value=0.17 Score=39.65 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=35.4
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC--cEEEEEeCCCh--HHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT--CKVIALSCDSV--ESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g--v~Vv~VS~D~~--~~~~~~~~~~ 235 (276)
+.+.++|-|| ++| |.|.+ +|.+.++.+++.... +.|--|..++. ...+..++++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHh
Confidence 3467899999 977 77776 588888888885543 44445555431 1235666777
No 205
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.11 E-value=0.033 Score=43.83 Aligned_cols=38 Identities=13% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF 68 (276)
Q Consensus 18 ~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~ 68 (276)
.++|+. +|.+..+++.||+. ++ +++||||++|+|+...
T Consensus 79 ~~~~~~-~~~~~~~~~~~~v~--------~~----P~~~lid~~G~i~~~~ 116 (131)
T cd03009 79 AVPFSD-RERRSRLNRTFKIE--------GI----PTLIILDADGEVVTTD 116 (131)
T ss_pred EcccCC-HHHHHHHHHHcCCC--------CC----CEEEEECCCCCEEccc
Confidence 355654 56677899999984 33 6999999999987543
No 206
>KOG0190|consensus
Probab=94.09 E-value=0.063 Score=51.97 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
...+++-|| |.||.+|.+-+|++.+..+.++..|-.|.-.-+|..+. ...+.++
T Consensus 42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y 95 (493)
T KOG0190|consen 42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKY 95 (493)
T ss_pred CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhh
Confidence 457789999 99999999999999999999998854444445565544 5666666
No 207
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=93.84 E-value=0.14 Score=42.12 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCCce-EEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 17 GKLPYP-IIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 17 ~~l~fp-llsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.+.|.+ ++.|.+|.+.+++++-... -+++|+|++|+|+++....++ -+|+-+++.-++
T Consensus 100 k~~p~s~~vlD~~G~~~~aW~L~~~~-----------SaiiVlDK~G~V~F~k~G~Ls----~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQFVLDSNGVVRKAWQLQEES-----------SAIIVLDKQGKVQFVKEGALS----PAEVQQVIALLK 158 (160)
T ss_pred hhCCCcEEEEcCCCceeccccCCCCC-----------ceEEEEcCCccEEEEECCCCC----HHHHHHHHHHHh
Confidence 456666 7899999999999985432 278899999999999987776 666666665443
No 208
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.81 E-value=0.088 Score=41.99 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=38.2
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDF 252 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 252 (276)
.+..+..+|.|- .+|||.|..++|.|.++.+.- .+++|=-++.|.. ....+.+...++..+|.-+..|.+
T Consensus 38 ~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~---~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 38 SIQKPYNILVIT-ETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDEN---KELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp T--S-EEEEEE---TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHH---HHHTTTTTT-SS--SSEEEEE-TT
T ss_pred hcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCC---hhHHHHHHhCCCeecCEEEEEcCC
Confidence 345566777777 999999999999999999874 4677766666532 223333322223345555555544
No 209
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=93.48 E-value=0.32 Score=42.58 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=49.2
Q ss_pred ccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCc---EEEEEeCCC
Q psy1172 155 AAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTC---KVIALSCDS 224 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv---~Vv~VS~D~ 224 (276)
+-+.+|.+++-+. . -.. ...|+++||-+-.+ .|..|..++.+|..+..+++..|. .++.||.-.
T Consensus 6 ~C~~~p~W~i~~~---~-pm~-~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 6 ICKPPPPWKIGGQ---D-PML-NSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred cCCCCCCceECCc---h-Hhh-hcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 4577899987433 2 223 57899999999855 699999999999999999998874 667776543
No 210
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=93.16 E-value=0.21 Score=35.70 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
|+.|+ ++|||+|.+..+.|.++. + ...+.++-|+.+
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i-~~~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--V-KPAYEVVELDQL 36 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--C-CCCCEEEEeeCC
Confidence 35667 999999999998888765 1 123677777765
No 211
>KOG0191|consensus
Probab=92.50 E-value=0.81 Score=43.03 Aligned_cols=43 Identities=7% Similarity=-0.012 Sum_probs=35.8
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEeCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RTCKVIALSCD 223 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~gv~Vv~VS~D 223 (276)
....++.|| +.||++|+.-+|.+.++...++. .++.+..+..+
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 345678888 99999999999999999999974 56777777766
No 212
>KOG3425|consensus
Probab=92.44 E-value=0.36 Score=37.85 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=36.6
Q ss_pred CCCeEEEEEEcC-------CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 179 PAFWGILFSHPS-------DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 179 ~gk~vvL~f~pa-------~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
+|+.+++.|.-+ +|||.|.+-.|-+.+..+. ...++.+|-|-+.+..
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNRP 77 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCCC
Confidence 567777777743 5999999999999988884 3567888888887653
No 213
>KOG0191|consensus
Probab=92.19 E-value=0.26 Score=46.36 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=39.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+++.++.|| +.||++|.+.+|.+.++...+++ .+...++|.. .++...+++
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~-~~~~~~~~y 97 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCD-EHKDLCEKY 97 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC---ceEEEEeCch-hhHHHHHhc
Confidence 4678999999 99999999999999999888855 3444455543 345566666
No 214
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.89 E-value=0.27 Score=48.33 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=48.9
Q ss_pred CCCCeEEEEEEcCCCCcccHHHHH-HHHHHHHHHHhCCcEEEEEeC--CChHHHHHHHHHHHhcccCCeeEEEeeCCcch
Q psy1172 178 IPAFWGILFSHPSDFTPVCTTELA-RVLQLIKEFEQRTCKVIALSC--DSVESHHDWIKALVRDCILGLLINLSVDDFKE 254 (276)
Q Consensus 178 ~~gk~vvL~f~pa~~cp~C~~el~-~l~~~~~~~~~~gv~Vv~VS~--D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~ 254 (276)
-++|||+|+|| |+||=.|+..-+ -|.+....++-+|+..+=+.+ ++++ +.+..+++. -.+.+..+..+.++.
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~-~~~lLk~~~---~~G~P~~~ff~~~g~ 546 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPA-ITALLKRLG---VFGVPTYLFFGPQGS 546 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHH-HHHHHHHcC---CCCCCEEEEECCCCC
Confidence 35579999999 999999996655 444666777778887776654 4554 455666662 236676666665443
No 215
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=91.84 E-value=0.06 Score=39.65 Aligned_cols=34 Identities=24% Similarity=0.596 Sum_probs=24.2
Q ss_pred CCceEEE---eCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcE
Q psy1172 19 LPYPIIA---DQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKL 64 (276)
Q Consensus 19 l~fplls---D~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I 64 (276)
.+++.+. |...++.+.||+. ++ ++++|||++|+|
T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~i~--------~i----P~~~lld~~G~I 95 (95)
T PF13905_consen 59 FPWYNVPFDDDNNSELLKKYGIN--------GI----PTLVLLDPDGKI 95 (95)
T ss_dssp TSSEEEETTTHHHHHHHHHTT-T--------SS----SEEEEEETTSBE
T ss_pred CCceEEeeCcchHHHHHHHCCCC--------cC----CEEEEECCCCCC
Confidence 3444444 4467899999985 33 599999999987
No 216
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=90.95 E-value=1.7 Score=34.99 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred CCCceEEE-eCc--cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 18 KLPYPIIA-DQD--RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 18 ~l~fplls-D~~--~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
++.|-.+. |.+ ..+++.||+. |+ .+++|+|++|+++....... ..+++.+.|+++.
T Consensus 52 ~~~~v~v~vd~~~~~~~~~~~~V~--------~i----Pt~v~~~~~G~~v~~~~G~~----~~~~l~~~l~~l~ 110 (142)
T cd02950 52 QVNFVMLNVDNPKWLPEIDRYRVD--------GI----PHFVFLDREGNEEGQSIGLQ----PKQVLAQNLDALV 110 (142)
T ss_pred CeeEEEEEcCCcccHHHHHHcCCC--------CC----CEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHH
Confidence 46665443 332 3788999874 44 59999999999998777432 3677888888765
No 217
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=90.92 E-value=0.63 Score=33.73 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
|..|. ..|||.|.+-...|+++..++ .|+.+.-|+++
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 44555 899999999999998887664 56766666665
No 218
>KOG0466|consensus
Probab=90.91 E-value=0.058 Score=49.10 Aligned_cols=100 Identities=46% Similarity=0.728 Sum_probs=68.7
Q ss_pred CCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCCcCCCCCCCCceeeCCCCCchhhhccCCCCC
Q psy1172 48 MPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKP 127 (276)
Q Consensus 48 ~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~~~~~~~~~~~~~~ 127 (276)
+|.|+|- |..-|.-+|...+. -..+|-.++++.--+..-. -+--=.+-|+...|.|.+...+...++.|.|
T Consensus 240 IPvPvRd-f~s~prlIVIRSFD-VNkPG~ev~~lkGgvaggs-------il~Gvlkvg~~IEiRPGiv~kd~~g~~~C~P 310 (466)
T KOG0466|consen 240 IPVPVRD-FTSPPRLIVIRSFD-VNKPGSEVDDLKGGVAGGS-------ILKGVLKVGQEIEIRPGIVTKDENGNIKCRP 310 (466)
T ss_pred CCCCccc-cCCCCcEEEEEeec-cCCCCchhhcccCccccch-------hhhhhhhcCcEEEecCceeeecCCCcEEEee
Confidence 3445553 44445555544443 2346666666543322110 1111235689999999999999999999999
Q ss_pred ceeeeeechhhhchhcccCCCCcccccccCC
Q psy1172 128 IFSRIVSLFAEQNELQFAVPGGLIDRFAAAL 158 (276)
Q Consensus 128 w~~~~~~~~~~~~~~~~a~~~~~~~~~~G~~ 158 (276)
.|.|+.+++++....++|.|+++++ +|.+
T Consensus 311 i~SrI~sL~AE~n~L~~AvPGGLIG--VGT~ 339 (466)
T KOG0466|consen 311 IFSRIVSLFAEQNDLQFAVPGGLIG--VGTK 339 (466)
T ss_pred HHHHHHHHHhhhccceeecCCceee--eccc
Confidence 9999999999999999999999986 4443
No 219
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=90.68 E-value=0.89 Score=30.98 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
+..|. ..|||.|.+-...|.+ .++.+..+++|.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 34455 8999999986555543 567777777774
No 220
>KOG0912|consensus
Probab=90.46 E-value=0.25 Score=44.88 Aligned_cols=44 Identities=14% Similarity=0.008 Sum_probs=35.4
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC--CcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR--TCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~--gv~Vv~VS~D~ 224 (276)
...|+|+|| |+||+..+.-+|.|.+.++.|++. .-+||-=++|.
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc 58 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC 58 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc
Confidence 457999999 999999999999999999999764 23455445664
No 221
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=89.74 E-value=1.1 Score=36.81 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=21.6
Q ss_pred cceEEEECCCCcE-EEEEecCCCCCCCHHHHHHHHHh
Q psy1172 52 CRAVFIIDPAKKL-RLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 52 ~R~tfiIdp~g~I-~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
.+++||||++|.+ +.+...+++ .+++.+.|+.
T Consensus 119 iPTt~LID~~G~~i~~~~~G~~s----~~~l~~~I~~ 151 (153)
T TIGR02738 119 TPATFLVNVNTRKAYPVLQGAVD----EAELANRMDE 151 (153)
T ss_pred CCeEEEEeCCCCEEEEEeecccC----HHHHHHHHHH
Confidence 4699999999875 445554443 5666666654
No 222
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.11 E-value=0.87 Score=36.04 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL 220 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V 220 (276)
++.+|+.|+ ..+||+|..-.+.+.++..++.+ +.|+-.
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 567788888 99999999999999888776532 444433
No 223
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.21 E-value=1.9 Score=29.07 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
|+.|. ..|||.|+.-...|.+ .++.+.-++++.....+++..+
T Consensus 2 v~ly~-~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~~ 44 (72)
T cd02066 2 VVVFS-KSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELKE 44 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHHH
Confidence 34455 8999999987777664 4566667777654434444433
No 224
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=87.46 E-value=2.4 Score=37.32 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCceEEEe-CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 18 KLPYPIIAD-QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 18 ~l~fpllsD-~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
...+|++.| .++...++||.+ |.| +|||. ||+|.+.=- |-..+-+.+|+-..|++.
T Consensus 180 ~~~~pi~vD~mdN~~~~~YgA~------------PeR-lyIi~-~gkv~Y~Gg-~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 180 FPQCPIVVDTMDNNFNKAYGAL------------PER-LYIIQ-DGKVVYKGG-PGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCCEEEEccCCHHHHHhCCC------------cce-EEEEE-CCEEEEeCC-CCCCcCCHHHHHHHHHhc
Confidence 467999999 588999999986 345 56664 999987765 666777999999999865
No 225
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.69 E-value=3.1 Score=33.30 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=34.7
Q ss_pred EecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC-CcEEEEEeC
Q psy1172 173 ILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR-TCKVIALSC 222 (276)
Q Consensus 173 ~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~-gv~Vv~VS~ 222 (276)
.+. .-.++++|..|+ .-.||+|.+-.+.+.++.+++-+. .+.++-..+
T Consensus 6 ~~G-~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 6 TIG-NPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EES--TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred eec-CCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 344 334677777787 999999999999999999998333 467776655
No 226
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.69 E-value=2.3 Score=28.39 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.2
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+.|. ..+||.|.+-...| +.+|+..-.+.++..
T Consensus 2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGS
T ss_pred EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccc
Confidence 4455 89999999876666 457787777777654
No 227
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=84.66 E-value=3.1 Score=29.69 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
.-|..|. ..|||.|.+-...|. +.|+....++++.......+.+.
T Consensus 8 ~~V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~ 52 (79)
T TIGR02190 8 ESVVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAV 52 (79)
T ss_pred CCEEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHH
Confidence 3455555 899999998766664 46777777777654444445443
No 228
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=84.62 E-value=3.7 Score=33.65 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=35.1
Q ss_pred EEEeCccHHHH-HhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 23 IIADQDRSLAV-QLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 23 llsD~~~~va~-~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
++-|..+ +++ ++++-.+. -++.|.|++|+|.++.-..++ ...+.+++..|.
T Consensus 129 ~vlD~~g-vak~AWqL~e~~-----------SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~ 180 (184)
T COG3054 129 FVLDSNG-VAKNAWQLKEES-----------SAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQ 180 (184)
T ss_pred eEEccch-hhhhhhcccccc-----------ceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHH
Confidence 7888887 666 88874332 389999999999999886555 223444444443
No 229
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=83.69 E-value=2.9 Score=30.46 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=28.2
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHHHH
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIKAL 235 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~~ 235 (276)
+..|-.+|||+|.+-...|.++..++ .++.+.-++++ +....+++.+..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~ 51 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTV 51 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHh
Confidence 34455899999998877776654332 24555555554 222233444444
No 230
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=83.43 E-value=3.6 Score=30.24 Aligned_cols=40 Identities=10% Similarity=-0.118 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEEc---CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 177 SIPAFWGILFSHP---SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 177 ~~~gk~vvL~f~p---a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
..+.++|+|+.-. ..|||+|.+-...|.+ .|+..-.+.++
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~ 46 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDIL 46 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcC
Confidence 4566787777551 1599999976666554 45555555554
No 231
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=82.71 E-value=4.6 Score=30.25 Aligned_cols=40 Identities=5% Similarity=-0.122 Sum_probs=26.0
Q ss_pred CCCCeEEEEEEc---CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 178 IPAFWGILFSHP---SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 178 ~~gk~vvL~f~p---a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
...++|+|+.-. ..|||+|.+--..|.+ +|+....+.++.
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~ 51 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE 51 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence 455677777652 2799999976665553 566666666643
No 232
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=82.31 E-value=4 Score=30.61 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=27.3
Q ss_pred cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
.++++.||+- |. ++.+++|++|++......-+ +.+|++..|
T Consensus 72 ~~l~~~~~v~--------gt----Pt~~~~d~~G~~v~~~~G~~----~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVN--------GT----PTIVFLDKDGKIVYRIPGYL----SPEELLKML 112 (112)
T ss_dssp HHHHHHTT----------SS----SEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred HHHHHHcCCC--------cc----CEEEEEcCCCCEEEEecCCC----CHHHHHhhC
Confidence 3688888874 55 49999999999887765333 356766554
No 233
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=81.22 E-value=3.4 Score=35.55 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred eCccHHHHHhCCCCCC--CCC--CCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 26 DQDRSLAVQLGMLDPV--EKD--SKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 26 D~~~~va~~yG~~~~~--~~~--~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
+...+++++|++.... ..+ ...+. -.=.+|+|||+|+++..+.+... .++|++.|+.+-
T Consensus 142 ~~~~~~~k~~~V~~~~v~~~~~~~y~~~-Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~~l~ 204 (207)
T COG1999 142 EQIEEVAKAYGVFYSKVPLDDSQNYTID-HSAGFYLIDADGRFLGTYDYGEP----PEEIAADLKKLL 204 (207)
T ss_pred HHHHHHHHHhcceeeecccCCCCCceee-eeeEEEEECCCCeEEEEecCCCC----hHHHHHHHHHHh
Confidence 3456889999987411 111 01111 12367899999999998876444 889999888763
No 234
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=80.70 E-value=3.9 Score=31.56 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=33.3
Q ss_pred ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCC-CcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA-KKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~-g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
+.+++++||+. ++ ++++++|++ |++....... .+.+++...|+.+.
T Consensus 73 ~~~l~~~~~v~--------~~----Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~ 119 (125)
T cd02951 73 EKELARKYRVR--------FT----PTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHHHcCCc--------cc----cEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHH
Confidence 36889999974 33 599999999 8988766532 34677777777664
No 235
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.63 E-value=4.6 Score=33.08 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=38.3
Q ss_pred CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC
Q psy1172 20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP 71 (276)
Q Consensus 20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~ 71 (276)
+.-+|+|.+++..|+.||.........|+- ..|=..||. ||+|.....-|
T Consensus 99 ~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~R-S~RYsmvV~-nGvV~~~~iE~ 148 (165)
T COG0678 99 NIKFIPDGNGEFTKAMGMLVDKSDLGFGVR-SWRYSMVVE-NGVVEKLFIEP 148 (165)
T ss_pred cEEEecCCCchhhhhcCceeecccCCccee-eeeEEEEEe-CCeEEEEEecC
Confidence 455699999999999999876544333332 568889995 99999998854
No 236
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=80.48 E-value=2.7 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.5
Q ss_pred cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172 29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF 68 (276)
Q Consensus 29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~ 68 (276)
..+++.||+. + .++++|||++|+|+...
T Consensus 89 ~~~~~~~~v~--------~----iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 89 ELLEKQFKVE--------G----IPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHHcCCC--------C----CCEEEEECCCCCEEchh
Confidence 4677778874 3 36999999999997644
No 237
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=80.36 E-value=3 Score=35.25 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQ 205 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~ 205 (276)
++..|+.|. ...||+|++..+.+.+
T Consensus 77 ~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 677788888 8999999999988876
No 238
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=79.66 E-value=7.9 Score=26.72 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=26.6
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL 235 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~ 235 (276)
+|-.++||.|.+-...|+ ++|+.+--+.++. ++..+++.+..
T Consensus 4 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 4 IYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEeCCCChHHHHHHHHHH-------HCCCcEEEEECCCCHHHHHHHHHHh
Confidence 344899999998766655 3667666677654 44444444444
No 239
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=79.39 E-value=3.6 Score=36.60 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=47.5
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhC---CcEEEEEeCCC
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQR---TCKVIALSCDS 224 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~---gv~Vv~VS~D~ 224 (276)
-..|+|..++++|+.+++.+.++||..||..+...|--.|...--. ...++|... .+++|-||+-+
T Consensus 99 lyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e 167 (252)
T PF05176_consen 99 LYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIE 167 (252)
T ss_pred CcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecch
Confidence 4579999999999999998899999888887756665555444322 234444333 68999999854
No 240
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=79.13 E-value=4.7 Score=28.35 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
|+.|. ..|||.|..--..|.++.. .+.++-|+.++
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34455 8999999988777776433 35677776654
No 241
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=78.93 E-value=5.6 Score=27.66 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=23.0
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+|-..+||.|.+-...|. ++|+.+--+.++..
T Consensus 3 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~ 34 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQ 34 (72)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCC
Confidence 454889999998877765 46777766776643
No 242
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=78.24 E-value=6.2 Score=30.77 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=35.7
Q ss_pred HHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcc
Q psy1172 30 SLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQL 90 (276)
Q Consensus 30 ~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~ 90 (276)
.+.+.|++- +. + =++++|+.||.+...+..|.+ .++|.+.|+++-+
T Consensus 68 ~lr~~l~~~-~~-----~-----f~~vLiGKDG~vK~r~~~p~~----~~~lf~~ID~MPm 113 (118)
T PF13778_consen 68 ALRKRLRIP-PG-----G-----FTVVLIGKDGGVKLRWPEPID----PEELFDTIDAMPM 113 (118)
T ss_pred HHHHHhCCC-CC-----c-----eEEEEEeCCCcEEEecCCCCC----HHHHHHHHhCCcc
Confidence 566677753 11 2 279999999999999887775 9999999998754
No 243
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=78.18 E-value=5.3 Score=35.88 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=34.4
Q ss_pred ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 21 YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP-AKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 21 fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp-~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
||.+ +.+..+++.||+. + ..++||+|+ .|+|+.+....+ +.+++.+.+..+
T Consensus 212 fp~~-~~d~~la~~~gV~--------~----vPtl~Lv~~~~~~v~~v~~G~~----s~~eL~~~i~~~ 263 (271)
T TIGR02740 212 FPNA-RPDAGQAQQLKIR--------T----VPAVFLADPDPNQFTPIGFGVM----SADELVDRILLA 263 (271)
T ss_pred CCcc-cCCHHHHHHcCCC--------c----CCeEEEEECCCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence 5554 4456788999874 3 469999999 566765555444 367777777554
No 244
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=77.78 E-value=4.4 Score=35.50 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=27.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL 220 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V 220 (276)
.|+.+|+.|. -..||+|++-.+.+.++ .+.|++|.-+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 4677888888 99999999988887654 3456776554
No 245
>PHA03050 glutaredoxin; Provisional
Probab=77.47 E-value=4.5 Score=31.06 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQ 205 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~ 205 (276)
..+. |+.|- .+|||+|.+-...|.+
T Consensus 11 ~~~~-V~vys-~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 11 ANNK-VTIFV-KFTCPFCRNALDILNK 35 (108)
T ss_pred ccCC-EEEEE-CCCChHHHHHHHHHHH
Confidence 3444 44555 8999999877666554
No 246
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.14 E-value=6.4 Score=32.02 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=30.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEE
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVI 218 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv 218 (276)
.++..|+.|+ .-.||+|..-.+.+.++.+++ ..++.+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 5778888888 899999999999999888887 3345544
No 247
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=75.81 E-value=7.1 Score=26.99 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=22.3
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
.|-.++||.|.+-...|. ++|+...-++++...
T Consensus 5 lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~ 37 (72)
T cd03029 5 LFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDI 37 (72)
T ss_pred EEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCCh
Confidence 344899999998766655 356766666665433
No 248
>PRK10329 glutaredoxin-like protein; Provisional
Probab=75.34 E-value=10 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=22.5
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
.|-..+||.|..-...| +++|+.+--+.++.
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~ 35 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDR 35 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCC
Confidence 44489999999765555 35788877777764
No 249
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=75.16 E-value=6.5 Score=29.53 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
..+ |+.|- .+|||+|.+--.-|. +.|+..-.+.+|.
T Consensus 7 ~~~-Vvvys-k~~Cp~C~~ak~~L~-------~~~i~~~~vdid~ 42 (99)
T TIGR02189 7 EKA-VVIFS-RSSCCMCHVVKRLLL-------TLGVNPAVHEIDK 42 (99)
T ss_pred cCC-EEEEE-CCCCHHHHHHHHHHH-------HcCCCCEEEEcCC
Confidence 344 33444 799999996655444 3455444555553
No 250
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=73.51 E-value=13 Score=25.79 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=25.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHHH
Q psy1172 190 SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKAL 235 (276)
Q Consensus 190 a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~~ 235 (276)
.++||.|.+-...|+ ++|+.+-.+.++. +...+++.+..
T Consensus 8 ~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~~ 47 (73)
T cd03027 8 RLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEERT 47 (73)
T ss_pred cCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHh
Confidence 789999998766666 4677777777764 33333444443
No 251
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=73.38 E-value=13 Score=32.12 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCC-CC
Q psy1172 19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKK-VA 97 (276)
Q Consensus 19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~-~~ 97 (276)
-.||.+|..+......||+-.+...+. +.=++|+-|. |+|.+.+. +.+|..+.+.-...-|-+|-.-. ..
T Consensus 129 W~~pw~Ss~gs~Fn~D~~~~~~~~~~~-----~g~svF~Rdg-~~VfhTys---t~~RG~e~l~~~~~lLDlTP~GR~E~ 199 (211)
T PF05988_consen 129 WTFPWYSSYGSDFNYDFGVSFDEGGEM-----PGLSVFLRDG-GRVFHTYS---TYGRGGERLMPTWNLLDLTPLGRQED 199 (211)
T ss_pred CCceEEEcCCCcccccccceeccCCCc-----eeEEEEEEcC-CEEEEEee---cCCCCchhhhhHHHHHhcCCCCCCCC
Confidence 779999999888889999854332222 2338999996 99999887 46787777766665555544322 33
Q ss_pred cCCCCCC
Q psy1172 98 TPVDWKV 104 (276)
Q Consensus 98 ~p~~w~~ 104 (276)
.|.+|.+
T Consensus 200 ~~~~W~r 206 (211)
T PF05988_consen 200 PPMDWWR 206 (211)
T ss_pred CCCCccc
Confidence 6777865
No 252
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=72.68 E-value=8.5 Score=29.90 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCCeEEEEEEcCC----CCcccHHHHH--HHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSD----FTPVCTTELA--RVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 179 ~gk~vvL~f~pa~----~cp~C~~el~--~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
.+|+++|+++ +. ||..|+.-+. ++.+.. +.++-+.+.++++++. .+....+
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~eg-~~la~~l 72 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPEG-YRVSQAL 72 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChHH-HHHHHHh
Confidence 5789999999 66 8899977663 343333 3467888888887764 3455555
No 253
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=72.28 E-value=9.5 Score=27.47 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=25.4
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEE--EeCCChHHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIA--LSCDSVESHHDWIKAL 235 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~--VS~D~~~~~~~~~~~~ 235 (276)
.|-.++||+|.+--..|. .+|+...- +..++.+..+.+++..
T Consensus 5 iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 5 IYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred EEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 344677999997655555 46655444 4444444555666655
No 254
>KOG1731|consensus
Probab=72.24 E-value=2.1 Score=42.11 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=31.2
Q ss_pred eEEEEEEcCCCCcccHHHHHHHHHHHHHHHh-CC-cEEEEEeC
Q psy1172 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQ-RT-CKVIALSC 222 (276)
Q Consensus 182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~-~g-v~Vv~VS~ 222 (276)
.-+|-|| ++||+.|+.-.|.++++.++.+. +. +.|.+|.-
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdC 100 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDC 100 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeec
Confidence 5688999 99999999999999999988754 23 34555544
No 255
>PRK10638 glutaredoxin 3; Provisional
Probab=71.90 E-value=12 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=21.6
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
+|-..+||+|.+-...|++ +|+..--+.++..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 4448999999987666663 5665555666543
No 256
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=71.17 E-value=17 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=32.4
Q ss_pred eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 22 PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 22 pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
-+=.|.+.++++.||+. ++ +++++++ +|+++..+... ++.+++...|
T Consensus 49 ~vd~~~~~~l~~~~~i~--------~~----Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 49 KVNCDAQPQIAQQFGVQ--------AL----PTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred EEeccCCHHHHHHcCCC--------CC----CEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 34467888999999985 44 4788886 99887665432 3466666554
No 257
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=70.81 E-value=18 Score=30.03 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=46.1
Q ss_pred cccccccCCCCCcEEecC-CCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHH-------HHHhCC-----
Q psy1172 150 LIDRFAAALLPGCSLLGC-QASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIK-------EFEQRT----- 214 (276)
Q Consensus 150 ~~~~~~G~~aPdF~L~~~-~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~-------~~~~~g----- 214 (276)
...+.+|..+|+.++... ||+.+.|.+.+ .|++-|++|-...-.+.+...+..|.+..+ .|...+
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 345579999999999875 89999998665 589999999866666666555555555443 443322
Q ss_pred -cEEEEEeCC
Q psy1172 215 -CKVIALSCD 223 (276)
Q Consensus 215 -v~Vv~VS~D 223 (276)
++++.|...
T Consensus 107 ~~~~~~I~~~ 116 (169)
T PF07976_consen 107 VFDVLLIHSS 116 (169)
T ss_dssp SEEEEEEESS
T ss_pred eeEEEEEecC
Confidence 788888764
No 258
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=70.14 E-value=46 Score=27.51 Aligned_cols=107 Identities=8% Similarity=0.058 Sum_probs=57.1
Q ss_pred cccCCCCCcEEecC-----CCC-----eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHH--HHhCCcEEEEE-
Q psy1172 154 FAAALLPGCSLLGC-----QAS-----LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKE--FEQRTCKVIAL- 220 (276)
Q Consensus 154 ~~G~~aPdF~L~~~-----~G~-----~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~--~~~~gv~Vv~V- 220 (276)
..|+++|..++.+- +|. .++.. .+.||+-||....+. . --.+.-..|.+..++ |....++..+|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~-~l~GKVrviq~iAGr-~-sake~N~~l~~aik~a~f~~d~yqtttIi 78 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSA-QLPGKVRVIQHIAGR-S-SAKEMNAPLIEAIKAAKFPHDKYQTTTII 78 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCcc-ccCCCEEEEEEeccC-C-chhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence 46889999988753 333 34455 678887776666332 2 223332333333222 43445676655
Q ss_pred eCCCh-----HHHHHHHHHHHhcccCCeeEE-EeeCCcchhhhhhhhcccccccCC
Q psy1172 221 SCDSV-----ESHHDWIKALVRDCILGLLIN-LSVDDFKEVEGRSRRFQESLNTYG 270 (276)
Q Consensus 221 S~D~~-----~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~a~~ygv~~~~~~ 270 (276)
+.|+. .-.+..++..++ .++.. ++.|.++. ..++|++..+.+.
T Consensus 79 N~dDAi~gt~~fVrss~e~~kk----~~p~s~~vlD~~G~---~~~aW~L~~~~Sa 127 (160)
T PF09695_consen 79 NLDDAIWGTGGFVRSSAEDSKK----EFPWSQFVLDSNGV---VRKAWQLQEESSA 127 (160)
T ss_pred ecccccccchHHHHHHHHHhhh----hCCCcEEEEcCCCc---eeccccCCCCCce
Confidence 66643 222333333322 23443 56687664 4777888755443
No 259
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.10 E-value=16 Score=30.61 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEee
Q psy1172 200 LARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSV 249 (276)
Q Consensus 200 l~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (276)
.|++.+..++.++.|+.|+.+|-+++...+.|.+.+ +++|-+-+
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l------~v~fi~~A 91 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL------GVPFIYRA 91 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc------CCceeecc
Confidence 478889999999999999999999999999999888 55555443
No 260
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=69.91 E-value=3.6 Score=36.65 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.7
Q ss_pred ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172 28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~ 73 (276)
...+-+.+||..... | =+||||++|+||++-..+.+
T Consensus 203 ~~~iRe~Lgi~N~~~----G------YvyLVD~~grIRWagsG~At 238 (252)
T PF05176_consen 203 SDDIREALGINNSYV----G------YVYLVDPNGRIRWAGSGPAT 238 (252)
T ss_pred cHHHHHHhCCCCCCc----C------eEEEECCCCeEEeCccCCCC
Confidence 458889999875432 2 68999999999998875544
No 261
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=69.19 E-value=15 Score=25.30 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=26.0
Q ss_pred ccceEEEECCCCcEEEEEecCCCCCCCH-HHHHHHHHhhc
Q psy1172 51 TCRAVFIIDPAKKLRLSFLYPATTGRNF-DEILRVLDSLQ 89 (276)
Q Consensus 51 ~~R~tfiIdp~g~I~~~~~~~~~~~r~~-~eilr~l~~lq 89 (276)
.++..|.||++|.|..+..-.-+...-+ ++++++++++.
T Consensus 11 ~v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 11 TVVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 5688999999999998876332222234 45666666554
No 262
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=69.14 E-value=3 Score=32.43 Aligned_cols=54 Identities=67% Similarity=1.072 Sum_probs=44.6
Q ss_pred CCCCceeeCCCCCchhhhccCCCCCceeeeeechhhhchhcccCCCCcccccccCCC
Q psy1172 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALL 159 (276)
Q Consensus 103 ~~g~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~G~~a 159 (276)
+-||++.|-|-+...+ +..+.|+|.+-.+.++..+...+.+|.|+..++ +|..+
T Consensus 41 kvgdeIEIrpg~~~~~-~~~~~~~pi~T~I~sl~~~~~~l~~a~pGgliG--vgT~L 94 (113)
T cd03688 41 KVGDEIEIRPGIVVKD-EGKIKCRPIFTKIVSLKAENNDLQEAVPGGLIG--VGTKL 94 (113)
T ss_pred eCCCEEEEeeceeeec-CCCeeEEEEEEEEEEEEecCccccEEeCCCeEE--Ecccc
Confidence 4588888888876655 456788999999999999999999999999886 56554
No 263
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=69.14 E-value=24 Score=26.16 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=35.7
Q ss_pred CCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 19 LPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 19 l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
+.|-.+.-.+.+++++|++- ++ + ||++-.+|++..... |.+.++++..|++|
T Consensus 51 ~~~~~vd~d~~~~~~~~~v~--------~~----P-t~~~~~~g~~~~~~~-----G~~~~~~~~~i~~~ 102 (102)
T cd02948 51 LHFATAEADTIDTLKRYRGK--------CE----P-TFLFYKNGELVAVIR-----GANAPLLNKTITEL 102 (102)
T ss_pred EEEEEEeCCCHHHHHHcCCC--------cC----c-EEEEEECCEEEEEEe-----cCChHHHHHHHhhC
Confidence 55654433367899999974 33 3 566667998877665 45678888888765
No 264
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=68.15 E-value=18 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.2
Q ss_pred cHHHHHhCCCCCCCCCCCCCCcccceEEEECC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP-AKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp-~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
.++++.|++. ++ ++.++||| +|.+........ +.++++..|+..
T Consensus 66 ~~~~~~~~~~--------~~----P~~~~i~~~~g~~l~~~~G~~----~~~~f~~~L~~~ 110 (114)
T cd02958 66 QRFLQSYKVD--------KY----PHIAIIDPRTGEVLKVWSGNI----TPEDLLSQLIEF 110 (114)
T ss_pred HHHHHHhCcc--------CC----CeEEEEeCccCcEeEEEcCCC----CHHHHHHHHHHH
Confidence 3778888853 44 59999999 899988766443 477888877654
No 265
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=67.90 E-value=8.1 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=29.4
Q ss_pred ecccCCCCeEEEEEEcCCCCcccHHHHHHH---HHHHHHHHhCCcEEEE
Q psy1172 174 LECSIPAFWGILFSHPSDFTPVCTTELARV---LQLIKEFEQRTCKVIA 219 (276)
Q Consensus 174 l~~~~~gk~vvL~f~pa~~cp~C~~el~~l---~~~~~~~~~~gv~Vv~ 219 (276)
+.....|++.|+.|| .-.||+|..--+.+ ..+.+.+ ..++.++-
T Consensus 31 ~~~p~~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 31 LDKPVAGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred ecCcCCCCCeEEEEe-CCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 333456788899999 89999999976654 4444444 34554443
No 266
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.22 E-value=17 Score=31.57 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=31.8
Q ss_pred CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCC
Q psy1172 168 QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRT 214 (276)
Q Consensus 168 ~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~g 214 (276)
++....+. +..++.+++.|+ ---||+|.+.++.+.+.+-...+..
T Consensus 73 ~~~~~~~G-~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 73 DGKDVVLG-NPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred CCCccccc-CCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 44444444 334467777777 8889999999999999777665543
No 267
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=66.55 E-value=13 Score=33.03 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=22.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIK 208 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~ 208 (276)
.++.+|.+|. -..||+|++....+.++.+
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 4667777888 9999999999888776543
No 268
>PRK09381 trxA thioredoxin; Provisional
Probab=66.55 E-value=31 Score=25.58 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred CCC-ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 18 KLP-YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 18 ~l~-fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
++. +.+=.|....+++.|++. + .++++++ ++|+++....... +.++|...|++
T Consensus 53 ~~~~~~vd~~~~~~~~~~~~v~--------~----~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~ 106 (109)
T PRK09381 53 KLTVAKLNIDQNPGTAPKYGIR--------G----IPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA 106 (109)
T ss_pred CcEEEEEECCCChhHHHhCCCC--------c----CCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHH
Confidence 344 344556677888888874 2 3466666 6999887765433 46676666654
No 269
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=66.31 E-value=14 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=23.9
Q ss_pred EEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 55 VFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 55 tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
.|.|+|||+|..... --.|.+-.++.+.|.+
T Consensus 2 ~~~I~~dG~V~~~v~--G~~G~~C~~~t~~lE~ 32 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVE--GFKGSSCLEATAALEE 32 (48)
T ss_pred EEEECCCcEEEEEEE--eccChhHHHHHHHHHH
Confidence 489999999988776 3457778888777754
No 270
>KOG4277|consensus
Probab=65.89 E-value=2.5 Score=38.57 Aligned_cols=36 Identities=6% Similarity=-0.118 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEE
Q psy1172 181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKV 217 (276)
Q Consensus 181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~V 217 (276)
.--++.|| +.||.+|.+--|--.+.-.++++-|..|
T Consensus 44 diW~VdFY-APWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEee-chhhhhcccccchhHHhCcchhhcCCce
Confidence 34588999 9999999999888888877777776543
No 271
>PRK10824 glutaredoxin-4; Provisional
Probab=65.62 E-value=15 Score=28.66 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=18.8
Q ss_pred CCCCeEEEEEEcC----CCCcccHHHHHHHHH
Q psy1172 178 IPAFWGILFSHPS----DFTPVCTTELARVLQ 205 (276)
Q Consensus 178 ~~gk~vvL~f~pa----~~cp~C~~el~~l~~ 205 (276)
...++|||+.- + .+||+|.+-..-|++
T Consensus 12 I~~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 12 IAENPILLYMK-GSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred HhcCCEEEEEC-CCCCCCCCchHHHHHHHHHH
Confidence 44567776655 4 499999987766654
No 272
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=65.30 E-value=19 Score=25.49 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=33.4
Q ss_pred CCCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHH
Q psy1172 17 GKLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRV 84 (276)
Q Consensus 17 ~~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~ 84 (276)
.++.|-.+ .|.+.++++.||+- ++ +++++++++|.....+ ...++.+++++.
T Consensus 48 ~~~~~~~v~~~~~~~~~~~~~i~--------~~----Pt~~~~~~~~~~~~~~----~g~~~~~~i~~~ 100 (101)
T cd02961 48 GKVVVAKVDCTANNDLCSEYGVR--------GY----PTIKLFPNGSKEPVKY----EGPRTLESLVEF 100 (101)
T ss_pred CceEEEEeeccchHHHHHhCCCC--------CC----CEEEEEcCCCcccccC----CCCcCHHHHHhh
Confidence 45666555 45668999999983 33 5899999887332222 223467777654
No 273
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=63.82 E-value=34 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred ceEEEECCCCcEEEEEecCC----CCCCCHHHHHHHHHhh
Q psy1172 53 RAVFIIDPAKKLRLSFLYPA----TTGRNFDEILRVLDSL 88 (276)
Q Consensus 53 R~tfiIdp~g~I~~~~~~~~----~~~r~~~eilr~l~~l 88 (276)
++++++||+|++.+...|-. ..+..+.++|+.|+.+
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 49999999999998887531 2334688888888654
No 274
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=62.90 E-value=17 Score=25.44 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC-hHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS-VESHHDWIKA 234 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~-~~~~~~~~~~ 234 (276)
+|-..+||.|.+-...|++ .|+..--++++. ++..+++.+.
T Consensus 3 ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~ 44 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQR 44 (79)
T ss_pred EEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHH
Confidence 3448999999987766653 555555555543 3333444433
No 275
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=62.12 E-value=39 Score=25.51 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
++.|--+ .|.+..+++.||+. ++ ++++++ ++|++...... .++.+++.+.|+.|
T Consensus 57 ~v~~~~vd~d~~~~l~~~~~V~--------~~----Pt~~i~-~~g~~~~~~~G----~~~~~~l~~~i~~~ 111 (111)
T cd02963 57 GVGIATVNAGHERRLARKLGAH--------SV----PAIVGI-INGQVTFYHDS----SFTKQHVVDFVRKL 111 (111)
T ss_pred CceEEEEeccccHHHHHHcCCc--------cC----CEEEEE-ECCEEEEEecC----CCCHHHHHHHHhcC
Confidence 4665433 45677999999984 33 477878 48876554432 24577777777654
No 276
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=61.64 E-value=22 Score=27.86 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=36.7
Q ss_pred CCCc-eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 18 KLPY-PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 18 ~l~f-pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
++.| -+=+|.+.++|+.||+. |+ ++.+++ .+|++.. +. -.++.++++..|+.|
T Consensus 65 ~v~~~kVD~d~~~~La~~~~I~--------~i----PTl~lf-k~G~~v~-~~----G~~~~~~l~~~l~~~ 118 (120)
T cd03065 65 GIGFGLVDSKKDAKVAKKLGLD--------EE----DSIYVF-KDDEVIE-YD----GEFAADTLVEFLLDL 118 (120)
T ss_pred CCEEEEEeCCCCHHHHHHcCCc--------cc----cEEEEE-ECCEEEE-ee----CCCCHHHHHHHHHHH
Confidence 4664 34467889999999985 55 366666 5898654 33 235678888888765
No 277
>KOG0541|consensus
Probab=61.44 E-value=5 Score=33.09 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=34.7
Q ss_pred ceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCC
Q psy1172 21 YPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 21 fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~ 73 (276)
.-+++|++++..+++|+-.+... ..+-....|=..+++ ||+|...-.-+..
T Consensus 106 V~f~aD~~g~ftk~lgleld~~d-~~~g~RS~R~a~vve-ngkV~~~nvE~~g 156 (171)
T KOG0541|consen 106 VKFVADPAGEFTKSLGLELDLSD-KLLGVRSRRYALVVE-NGKVTVVNVEEGG 156 (171)
T ss_pred EEEEecCCCceeeeccceeeecc-ccCccccccEEEEEe-CCeEEEEEeccCC
Confidence 34599999999999998543221 111223567788886 9999988874433
No 278
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=61.32 E-value=41 Score=27.91 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=31.5
Q ss_pred CCCeEEEEEEcCCCCcccHHHHH------HHHHHHHHHHhCCcEEEEEeCCChHHHH-HH---HHHHHhcccCCeeEEEe
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELA------RVLQLIKEFEQRTCKVIALSCDSVESHH-DW---IKALVRDCILGLLINLS 248 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~------~l~~~~~~~~~~gv~Vv~VS~D~~~~~~-~~---~~~~~~~~~~~~~~~~l 248 (276)
.+|+++|.+. .+||..|..-.. ++.++.+ +.+.-|-|..+....+. .+ .......+ +.+..+.
T Consensus 36 e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN----~~FI~VkvDree~Pdid~~y~~~~~~~~~~g--GwPl~vf 108 (163)
T PF03190_consen 36 ENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN----RNFIPVKVDREERPDIDKIYMNAVQAMSGSG--GWPLTVF 108 (163)
T ss_dssp HT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH----HH-EEEEEETTT-HHHHHHHHHHHHHHHS-----SSEEEE
T ss_pred cCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh----CCEEEEEeccccCccHHHHHHHHHHHhcCCC--CCCceEE
Confidence 5799999999 999999996542 3333322 22333444444422222 22 22222222 6677777
Q ss_pred eCCcch
Q psy1172 249 VDDFKE 254 (276)
Q Consensus 249 ~D~~~~ 254 (276)
.++++.
T Consensus 109 ltPdg~ 114 (163)
T PF03190_consen 109 LTPDGK 114 (163)
T ss_dssp E-TTS-
T ss_pred ECCCCC
Confidence 777664
No 279
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=59.88 E-value=15 Score=27.17 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=29.4
Q ss_pred ccHHHHHhCCCCCCCCCCCCCCcccceEEEECC-CCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDP-AKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp-~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
..+++++||+. ++ ++++|+++ +|++..... -..+.+++.+.|
T Consensus 61 ~~~~~~~~~i~--------~~----Pti~~~~~~~g~~~~~~~----G~~~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVF--------GP----PTYLFYGPGGEPEPLRLP----GFLTADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCC--------CC----CEEEEECCCCCCCCcccc----cccCHHHHHHHh
Confidence 35888999874 33 59999999 898765543 234567777665
No 280
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=59.56 E-value=15 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=25.0
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS 221 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS 221 (276)
..|+ ...||.|..-.+.+.+.... ...++.+.-+.
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~~ 36 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYA-DDGGVRVVYRP 36 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhh-cCCcEEEEEec
Confidence 4556 88999999999999887733 34456665543
No 281
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=59.17 E-value=14 Score=25.78 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=26.3
Q ss_pred ccceEEEECCCCcEEEEEecCCCCCC-CHHHHHHHHHhhc
Q psy1172 51 TCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILRVLDSLQ 89 (276)
Q Consensus 51 ~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~eilr~l~~lq 89 (276)
.+...|.||++|+|..+.+-..+... =-++++++++..+
T Consensus 17 ~v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~~ 56 (79)
T PF03544_consen 17 TVVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKWR 56 (79)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-E
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhCC
Confidence 46889999999999998774333333 3456666665533
No 282
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=59.04 E-value=19 Score=30.42 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=23.5
Q ss_pred eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 54 AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
.-|+||++|+++..+. ..+...-.+|.+.|++|
T Consensus 148 ~KFLv~~~G~vv~r~~--~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 148 EKFLVGRDGQVIQRFS--PDMTPEDPIVMESIKLA 180 (183)
T ss_pred EEEEECCCCcEEEEEC--CCCCCCHHHHHHHHHHH
Confidence 5899999999988875 44455555566666654
No 283
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=58.70 E-value=5.1 Score=37.11 Aligned_cols=55 Identities=42% Similarity=0.657 Sum_probs=47.5
Q ss_pred CCCCCceeeCCCCCchhhhccCCCCCceeeeeechhhhchhcccCCCCcccccccCCC
Q psy1172 102 WKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALL 159 (276)
Q Consensus 102 w~~g~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~G~~a 159 (276)
.+.||+.-|.|.+..++-. +..|+|.+-.++++.+++..+..|.|+++++ +|..+
T Consensus 246 l~vGDEIEIrPGi~v~k~~-k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvg--vGT~l 300 (415)
T COG5257 246 LRVGDEIEIRPGIVVEKGG-KTVWEPITTEIVSLQAGGEDVEEARPGGLVG--VGTKL 300 (415)
T ss_pred EecCCeEEecCCeEeecCC-ceEEEEeeEEEEEEEeCCeeeeeccCCceEE--Eeccc
Confidence 3568999999998776654 6789999999999999999999999999987 77766
No 284
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=58.38 E-value=45 Score=27.66 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=38.5
Q ss_pred ceEEEeCc--cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCC---CC-CHHHHHHHHHhhccc
Q psy1172 21 YPIIADQD--RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT---GR-NFDEILRVLDSLQLT 91 (276)
Q Consensus 21 fpllsD~~--~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~---~r-~~~eilr~l~~lq~~ 91 (276)
.||..|.+ ..|.+.|--+.....+..|+| .+.+++|+|+..+.-.|.... |+ .+.++|+.|..+-.+
T Consensus 74 I~VkvDree~Pdid~~y~~~~~~~~~~gGwP----l~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~ 146 (163)
T PF03190_consen 74 IPVKVDREERPDIDKIYMNAVQAMSGSGGWP----LTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKE 146 (163)
T ss_dssp EEEEEETTT-HHHHHHHHHHHHHHHS---SS----EEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHH
T ss_pred EEEEeccccCccHHHHHHHHHHHhcCCCCCC----ceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHH
Confidence 47888854 377777721110001112775 889999999999998886553 22 688888888766433
No 285
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=57.77 E-value=8.9 Score=31.86 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=25.5
Q ss_pred ccHHHHHhCCCCCCCC----CCCCCCcccceEEEECCCCcEEEEEec
Q psy1172 28 DRSLAVQLGMLDPVEK----DSKGMPLTCRAVFIIDPAKKLRLSFLY 70 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~----~~~g~~~~~R~tfiIdp~g~I~~~~~~ 70 (276)
-.++++.|++...... ...+.-.-.-.+|+|||+|+|+.++.+
T Consensus 127 i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 127 IEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 3578888987642111 000110013489999999999999864
No 286
>KOG0911|consensus
Probab=57.51 E-value=4.9 Score=35.02 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
+++..++.|| +.||.+|..-..-+..+.+.+ +.++++-+..+
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7889999999 999999987777777777776 55666666554
No 287
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=57.42 E-value=33 Score=27.42 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=37.8
Q ss_pred CCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 19 LPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 19 l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
+.|-.+ .|.+..++..||+. ++ ++.++. .||++....... ++.+++++.|+++-
T Consensus 70 v~~akVDiD~~~~LA~~fgV~--------si----PTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~L 124 (132)
T PRK11509 70 WQVAIADLEQSEAIGDRFGVF--------RF----PATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_pred eEEEEEECCCCHHHHHHcCCc--------cC----CEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHHh
Confidence 554333 45788999999986 44 356666 699888777632 35788888888764
No 288
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=56.47 E-value=43 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172 190 SDFTPVCTTELARVLQLIKEFEQRTCKVIALSC 222 (276)
Q Consensus 190 a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~ 222 (276)
+..||.|..-...+++...++ |+.+=.+..
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~ 36 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDI 36 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEET
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEc
Confidence 667999998888888777765 344444433
No 289
>PF00661 Matrix: Viral matrix protein; InterPro: IPR000982 The matrix protein plays a crucial role in virus assembly, and interacts with the RNP complex as well as with the viral membrane. It is found in Morbillivirus, Paramyxovirus, Pneumovirus.; GO: 0005198 structural molecule activity, 0019068 virion assembly
Probab=56.44 E-value=15 Score=34.35 Aligned_cols=71 Identities=28% Similarity=0.454 Sum_probs=50.4
Q ss_pred CCCCceEEEeC--ccHHHHHhCCCCCCCCCCCCCCcccceEEEE--------------------CCCCcEEEEEecCCCC
Q psy1172 17 GKLPYPIIADQ--DRSLAVQLGMLDPVEKDSKGMPLTCRAVFII--------------------DPAKKLRLSFLYPATT 74 (276)
Q Consensus 17 ~~l~fpllsD~--~~~va~~yG~~~~~~~~~~g~~~~~R~tfiI--------------------dp~g~I~~~~~~~~~~ 74 (276)
.=.+||++.|+ ++++..++-+.+....+.. ..+.+||. ++...++..-..|+..
T Consensus 16 ~L~~fpi~~~~~g~g~L~pQvRi~~~g~~~~~----~~~~~fi~~yGFIe~~~~~~~~~g~~~~~~~~~~~Ta~~lpLG~ 91 (348)
T PF00661_consen 16 SLLPFPIVMDEGGDGRLQPQVRIQDLGDGDRK----KESYMFINTYGFIEDNDTEGPFFGEVNEQPKPPVVTAGMLPLGV 91 (348)
T ss_pred cccccCceEccCCCceEcceEEEecCCCCCCC----CCceEEEeeeEEEEecCCCCCCccccCcCCCcceEEeeeeeecc
Confidence 45789999999 9999999988876554322 34566653 1233445555568888
Q ss_pred CC---CHHHHHHHHHhhccc
Q psy1172 75 GR---NFDEILRVLDSLQLT 91 (276)
Q Consensus 75 ~r---~~~eilr~l~~lq~~ 91 (276)
|| +.+|+++.+..|+.+
T Consensus 92 g~~~~~p~eLl~~~~~l~I~ 111 (348)
T PF00661_consen 92 GPSTADPEELLKACTELDIT 111 (348)
T ss_pred ccCCCCHHHHHHHHhcceEE
Confidence 88 579999999988843
No 290
>PRK10996 thioredoxin 2; Provisional
Probab=55.89 E-value=57 Score=25.83 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=31.6
Q ss_pred EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 25 ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 25 sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
.|.+.++++.||+. |+| +++++ ++|++...+... .+.+++...|+++
T Consensus 92 ~~~~~~l~~~~~V~--------~~P----tlii~-~~G~~v~~~~G~----~~~e~l~~~l~~~ 138 (139)
T PRK10996 92 TEAERELSARFRIR--------SIP----TIMIF-KNGQVVDMLNGA----VPKAPFDSWLNEA 138 (139)
T ss_pred CCCCHHHHHhcCCC--------ccC----EEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHh
Confidence 45677999999985 443 55555 589987766533 3467777777653
No 291
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=55.18 E-value=32 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCC
Q psy1172 18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPA 61 (276)
Q Consensus 18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~ 61 (276)
++.|-.+ .|.+.++++.||+. .+++++|.+.+
T Consensus 53 ~i~~~~vd~d~~~~l~~~~~v~------------~vPt~~i~~~g 85 (113)
T cd02975 53 KLKLEIYDFDEDKEKAEKYGVE------------RVPTTIFLQDG 85 (113)
T ss_pred ceEEEEEeCCcCHHHHHHcCCC------------cCCEEEEEeCC
Confidence 3566544 56788999999975 23577777653
No 292
>PF13728 TraF: F plasmid transfer operon protein
Probab=54.78 E-value=45 Score=28.81 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=26.2
Q ss_pred ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCC-CHHHHHH
Q psy1172 28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILR 83 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~eilr 83 (276)
+..+++.+|+- ...++|+|+|++.... |++.|- +.+||++
T Consensus 172 ~~g~~~~l~v~------------~~Pal~Lv~~~~~~~~----pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 172 DPGQAKRLGVK------------VTPALFLVNPNTKKWY----PVSQGFMSLDELED 212 (215)
T ss_pred CHHHHHHcCCC------------cCCEEEEEECCCCeEE----EEeeecCCHHHHHH
Confidence 56788888873 4579999999983222 333333 4666654
No 293
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=54.13 E-value=76 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
++.|-.+ .|.+.++++.||+. + .++++++ ++|++....... ++.+++.+.|++
T Consensus 46 ~~~~~~vd~~~~~~~~~~~~v~--------~----~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 46 KVKFVKLNVDENPDIAAKYGIR--------S----IPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred CeEEEEEECCCCHHHHHHcCCC--------c----CCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 4665433 35677889999874 2 3578888 688775444322 346777776654
No 294
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=52.64 E-value=22 Score=35.48 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred cHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 29 RSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 29 ~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
.++++.||+. |+ ++++++|+||+++.... ..-..+.+++++.|++++
T Consensus 524 ~~l~~~~~v~--------g~----Pt~~~~~~~G~~i~~~r--~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 524 VALLKHYNVL--------GL----PTILFFDAQGQEIPDAR--VTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHcCCC--------CC----CEEEEECCCCCCccccc--ccCCCCHHHHHHHHHHhc
Confidence 5788889875 44 48999999999854332 112246889999988765
No 295
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=52.03 E-value=49 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 30 SLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 30 ~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
++++.|++. ++| ||++-.+|++...+. |.+..++.+.+.
T Consensus 62 ~l~~~~~V~--------~~P-----t~~~~~~G~~v~~~~-----G~~~~~l~~~~~ 100 (103)
T cd02985 62 ELCRREKII--------EVP-----HFLFYKDGEKIHEEE-----GIGPDELIGDVL 100 (103)
T ss_pred HHHHHcCCC--------cCC-----EEEEEeCCeEEEEEe-----CCCHHHHHHHHH
Confidence 789999974 443 466668999876665 455677777764
No 296
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=45.39 E-value=29 Score=30.91 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHh
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQ 212 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~ 212 (276)
.||+.|++.= +.|||.|..+.=.|-.....|..
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcCC
Confidence 4776555555 99999999997777666666643
No 297
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=45.31 E-value=58 Score=23.28 Aligned_cols=46 Identities=22% Similarity=0.523 Sum_probs=30.7
Q ss_pred EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy1172 25 ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS 87 (276)
Q Consensus 25 sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~ 87 (276)
+|.+..+++.||+. ++ +++|++++++. ...+ . -.++.+++...|+.
T Consensus 55 ~~~~~~~~~~~~i~--------~~----P~~~~~~~~~~-~~~~--~--g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 55 ATAEKDLASRFGVS--------GF----PTIKFFPKGKK-PVDY--E--GGRDLEAIVEFVNE 100 (102)
T ss_pred ccchHHHHHhCCCC--------cC----CEEEEecCCCc-ceee--c--CCCCHHHHHHHHHh
Confidence 45677999999974 33 48999998886 2222 2 13467777776654
No 298
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=45.17 E-value=42 Score=30.26 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=39.9
Q ss_pred CCCCCcEEecCCCCeEEecccCC-CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHH---hCCcEEEEEeCCChHHHHHHH
Q psy1172 157 ALLPGCSLLGCQASLVILECSIP-AFWGILFSHPSDFTPVCTTELARVLQLIKEFE---QRTCKVIALSCDSVESHHDWI 232 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~-gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~---~~gv~Vv~VS~D~~~~~~~~~ 232 (276)
+.+|-|++.|.+|..+..+..-. ++.+.++|+ |..+...+-+..+.-. ..+++|+.|+.+....+.
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~--- 142 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLA--- 142 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHH---
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHH---
Confidence 45899999999999877662222 556665555 4455444433222221 467999999997654432
Q ss_pred HHHHhcccCCeeEEEeeCC
Q psy1172 233 KALVRDCILGLLINLSVDD 251 (276)
Q Consensus 233 ~~~~~~~~~~~~~~~l~D~ 251 (276)
.+... ...++.|.++-|.
T Consensus 143 ~~~~~-k~~~~~F~~vP~~ 160 (274)
T PF04278_consen 143 QENKK-KPEGLQFRFVPDP 160 (274)
T ss_dssp HHTTT--TT-EEEEEE--H
T ss_pred HHhhc-CCcCceEEEcCCH
Confidence 11110 1126678888653
No 299
>PRK10819 transport protein TonB; Provisional
Probab=44.98 E-value=39 Score=29.96 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=27.6
Q ss_pred ccceEEEECCCCcEEEEEecCCCCCC-CHH-HHHHHHHhhcc
Q psy1172 51 TCRAVFIIDPAKKLRLSFLYPATTGR-NFD-EILRVLDSLQL 90 (276)
Q Consensus 51 ~~R~tfiIdp~g~I~~~~~~~~~~~r-~~~-eilr~l~~lq~ 90 (276)
.++.-|.||++|+|..+..-. +.|. .++ +++++++.+.+
T Consensus 182 ~V~V~f~I~~~G~V~~v~V~~-Ssg~~~fD~aal~Avr~wr~ 222 (246)
T PRK10819 182 QVKVKFDVDEDGRVDNVRILS-AEPRNMFEREVKQAMRKWRY 222 (246)
T ss_pred EEEEEEEECCCCCEEEEEEec-cCChHHHHHHHHHHHHhcCC
Confidence 568899999999999988733 3344 354 66777766643
No 300
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=44.05 E-value=54 Score=24.46 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=25.1
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--C--ChHHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--D--SVESHHDWIKAL 235 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D--~~~~~~~~~~~~ 235 (276)
+|-..+||.|++-...|++ +|+.+-.+++ + +...++++....
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 4448899999987666554 5654444444 2 234555555444
No 301
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=43.93 E-value=42 Score=24.66 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=28.1
Q ss_pred ccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 28 DRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 28 ~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
+.++++.||+. ++ ++++++++.+.+.....+.-.-.++.+++.+.|
T Consensus 63 ~~~~~~~~~i~--------~~----Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ--------GF----PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC--------cC----CEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 66899999874 33 589999888732111111122355788877665
No 302
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=43.14 E-value=58 Score=25.70 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=27.9
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--CC--hHHHHHHHHHH
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--DS--VESHHDWIKAL 235 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D~--~~~~~~~~~~~ 235 (276)
+.+|-..+|+.|++-..-|. ++|+.+-.+.+ ++ .+.+.+|.+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 34555899999998766555 45665555554 33 35666666665
No 303
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=43.12 E-value=1.1e+02 Score=27.64 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHH-----HHHHHHHHHHHHhCCcEEEEEeCCChHHHHHH
Q psy1172 157 ALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTE-----LARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231 (276)
Q Consensus 157 ~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~e-----l~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~ 231 (276)
+..|-|++.|.+|+.+..+.. .|+.+.-.|+ ++.+ +..+++...+. ..+++|+.||.+.....
T Consensus 80 ~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~-------s~qedA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl--- 147 (270)
T TIGR00995 80 AGTSVFTVSNAQNEFVLASDN-DGEKSIGLLC-------FRQEDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL--- 147 (270)
T ss_pred cCCceEEEEcCCCCeEEEECC-CCCceEEEEE-------CCHHHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH---
Confidence 458999999999998877733 3433433333 1222 22232222332 35689999999876543
Q ss_pred HHHHHhcccCCeeEEEeeCC
Q psy1172 232 IKALVRDCILGLLINLSVDD 251 (276)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~D~ 251 (276)
..+ ++.|.++.|.
T Consensus 148 ----~~e---~l~F~fiP~~ 160 (270)
T TIGR00995 148 ----KVE---GIGFRFLPDP 160 (270)
T ss_pred ----hhc---CccEEEeCCH
Confidence 122 4688888663
No 304
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=42.72 E-value=47 Score=25.28 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=26.4
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--CC--hHHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--DS--VESHHDWIKAL 235 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D~--~~~~~~~~~~~ 235 (276)
+|-..+||.|++-..-|++ +|+.+--+.+ ++ .+.+++|.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 4448899999988766664 5555444443 33 35566666654
No 305
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=42.72 E-value=47 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=24.7
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~ 234 (276)
.|-.+|||+|.+--.-|. .+|+..-.|.+|......++.++
T Consensus 6 vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~~~ 46 (410)
T PRK12759 6 IYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFYAE 46 (410)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHHHH
Confidence 444899999997655544 46766555666543333344444
No 306
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.72 E-value=78 Score=22.91 Aligned_cols=51 Identities=6% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCceEE-EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy1172 18 KLPYPII-ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLD 86 (276)
Q Consensus 18 ~l~fpll-sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~ 86 (276)
++.|--+ +|.+..+++.|++. ++ ++++++ ++|++ ..+. -.++.+++.+.|+
T Consensus 49 ~v~~~~vd~~~~~~~~~~~~i~--------~~----Pt~~~~-~~g~~-~~~~----G~~~~~~l~~~i~ 100 (101)
T cd02994 49 GINVAKVDVTQEPGLSGRFFVT--------AL----PTIYHA-KDGVF-RRYQ----GPRDKEDLISFIE 100 (101)
T ss_pred CeEEEEEEccCCHhHHHHcCCc--------cc----CEEEEe-CCCCE-EEec----CCCCHHHHHHHHh
Confidence 3444333 46677899999974 34 356665 88985 2222 2456788777664
No 307
>PTZ00062 glutaredoxin; Provisional
Probab=42.50 E-value=69 Score=27.53 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEE---cCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 177 SIPAFWGILFSH---PSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 177 ~~~gk~vvL~f~---pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
....++|+|+.- -+.+||+|++-...|+ +.|+...-+.++
T Consensus 109 li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~ 151 (204)
T PTZ00062 109 LIRNHKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIF 151 (204)
T ss_pred HHhcCCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcC
Confidence 345678888777 1258999987665555 356655556654
No 308
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=41.77 E-value=33 Score=31.33 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=26.8
Q ss_pred eEEEECCCCcEEEEEecCCCCCCCH---HHHHHHHH
Q psy1172 54 AVFIIDPAKKLRLSFLYPATTGRNF---DEILRVLD 86 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~~~r~~---~eilr~l~ 86 (276)
.+|+||++|++++...+...++... +++++.+.
T Consensus 106 ~vf~vd~~G~~vy~~~~d~~t~~~~~~~~~L~~~i~ 141 (295)
T COG3322 106 GVFVVDPSGKLVYSKLVDQETATELPLPESLLEDIR 141 (295)
T ss_pred EEEEECCCCCEEEEeeeccccccccCCcHHHHHHHh
Confidence 8999999999999999987777754 46666665
No 309
>KOG1651|consensus
Probab=41.57 E-value=36 Score=28.39 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.9
Q ss_pred eEEEECCCCcEEEEEecCCC
Q psy1172 54 AVFIIDPAKKLRLSFLYPAT 73 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~ 73 (276)
+=|+||+||.|+..+. |..
T Consensus 138 ~KFLVd~~G~vv~Ry~-ptt 156 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFS-PTT 156 (171)
T ss_pred EEEeECCCCcEEEeeC-CCC
Confidence 6799999999999886 444
No 310
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=41.07 E-value=35 Score=27.78 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=31.7
Q ss_pred hhhHHHhcCCCCCCCCCCceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEE
Q psy1172 3 LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRL 66 (276)
Q Consensus 3 ~~~i~~~~~~~~~~~~l~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~ 66 (276)
+++|.+.+. ..+++|-+.-|...+-..+|... |+ +..-+|+|||.|+|+.
T Consensus 107 l~~i~~~~~----~~~~~f~~~~gn~~~D~~~y~~~--------gi--~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 107 LRDIKSLFP----PQGNPFYAGFGNRITDVISYSAV--------GI--PPSRIFTINPKGEVHQ 156 (157)
T ss_pred HHHHHHhcC----CCCCCEEEEeCCCchhHHHHHHc--------CC--ChhhEEEECCCCcccc
Confidence 445555443 13466655455556777777654 55 4578999999999863
No 311
>KOG1752|consensus
Probab=41.01 E-value=56 Score=24.95 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=14.3
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHH
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARV 203 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l 203 (276)
..++| +.|= .++||+|.. ++.|
T Consensus 12 ~~~~V-VifS-Ks~C~~c~~-~k~l 33 (104)
T KOG1752|consen 12 SENPV-VIFS-KSSCPYCHR-AKEL 33 (104)
T ss_pred hcCCE-EEEE-CCcCchHHH-HHHH
Confidence 34554 4444 699999998 4443
No 312
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=40.89 E-value=84 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=34.7
Q ss_pred cCCCCCcEEecC-CCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHH
Q psy1172 156 AALLPGCSLLGC-QASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLIKEF 210 (276)
Q Consensus 156 G~~aPdF~L~~~-~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~ 210 (276)
|..+|++.+... +++.+.|.+.+ .|++-|++|=...-+ ..+...|.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~---~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAP---AQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCc---hhHHHHHHHHHHHH
Confidence 677899999875 88888877555 478888888733333 34444555555555
No 313
>smart00594 UAS UAS domain.
Probab=40.67 E-value=73 Score=24.52 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=29.5
Q ss_pred CccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCC-cEEEEEecCCCCCCCHHHHHHHH
Q psy1172 27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK-KLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 27 ~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g-~I~~~~~~~~~~~r~~~eilr~l 85 (276)
...++++.|++. |+ +.+.|+||+| ..+..+.....-..+.++++..|
T Consensus 74 eg~~l~~~~~~~--------~~----P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 74 EGQRVSQFYKLD--------SF----PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hHHHHHHhcCcC--------CC----CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 345788888874 44 5899999997 22223333344344678887765
No 314
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=40.65 E-value=64 Score=24.40 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=27.6
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCc--EEEEEeCC--ChHHHHHHHHHH
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTC--KVIALSCD--SVESHHDWIKAL 235 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv--~Vv~VS~D--~~~~~~~~~~~~ 235 (276)
+|-..+|+.|++...-|.+ +|+ +++-+.-+ +.+.+++|.+..
T Consensus 3 iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 4448899999987776664 454 44444434 346777777765
No 315
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=40.64 E-value=42 Score=21.44 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=31.5
Q ss_pred CceEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 20 PYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 20 ~fpllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
+++.+ +++..+.+..-.+... ..+..+|+|.+|++..+.. ..++++.+
T Consensus 8 ~~~~v-~~~~~l~~~~~~~~~~---------~~~~~~V~d~~~~~~G~is--------~~dl~~~l 55 (57)
T PF00571_consen 8 PPITV-SPDDSLEEALEIMRKN---------GISRLPVVDEDGKLVGIIS--------RSDLLKAL 55 (57)
T ss_dssp SSEEE-ETTSBHHHHHHHHHHH---------TSSEEEEESTTSBEEEEEE--------HHHHHHHH
T ss_pred CCEEE-cCcCcHHHHHHHHHHc---------CCcEEEEEecCCEEEEEEE--------HHHHHhhh
Confidence 34444 3445666655544322 2479999999999999887 66777665
No 316
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=40.03 E-value=61 Score=27.79 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe-CCChHHHHHHHHHH
Q psy1172 181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS-CDSVESHHDWIKAL 235 (276)
Q Consensus 181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS-~D~~~~~~~~~~~~ 235 (276)
.--+.+|. ...|+.|..-+..+.. ....+.|+.|. -.+....+.|+..+
T Consensus 109 ~~rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 109 GGRLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred CCeEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 34466666 5899999998888754 34567777775 45677899999888
No 317
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=40.02 E-value=56 Score=28.66 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=28.3
Q ss_pred ccceEEEECCCCcEEEEEecCCCCCCCH-HHHHHHHHhhc
Q psy1172 51 TCRAVFIIDPAKKLRLSFLYPATTGRNF-DEILRVLDSLQ 89 (276)
Q Consensus 51 ~~R~tfiIdp~g~I~~~~~~~~~~~r~~-~eilr~l~~lq 89 (276)
.++..|.||++|.|.-+.+-.-+..+-+ .+.|++++.+.
T Consensus 181 ~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~ 220 (244)
T COG0810 181 TVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWR 220 (244)
T ss_pred eEEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhc
Confidence 5799999999999999888433333334 55677777665
No 318
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=39.93 E-value=34 Score=26.57 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=38.1
Q ss_pred cCCCC-eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 177 SIPAF-WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 177 ~~~gk-~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
.++++ -+||+|-|..--+.-..++..|++....+.++.+.|+.|.-+
T Consensus 5 ~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~ 52 (118)
T PF13778_consen 5 QFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGD 52 (118)
T ss_pred HhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCC
Confidence 55554 567777788888888899999999999999999999988543
No 319
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=44 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=21.2
Q ss_pred eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 54 AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
+=|+||.+|.|...+. |.. ..+++...|++|
T Consensus 129 tKFLvdr~G~VV~Rf~-p~t---~P~d~~~~Ie~l 159 (162)
T COG0386 129 TKFLVDRDGNVVKRFS-PKT---KPEDIELAIEKL 159 (162)
T ss_pred EEEEEcCCCcEEEeeC-CCC---ChhhHHHHHHHH
Confidence 7899999999998886 443 234444455544
No 320
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=38.22 E-value=59 Score=22.65 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=25.7
Q ss_pred CCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHH
Q psy1172 168 QASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQ 205 (276)
Q Consensus 168 ~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~ 205 (276)
+|..+.+- ++++..+.|.|- ++ |..|......+..
T Consensus 15 dGGdv~lv-~v~~~~V~V~l~-Ga-C~gC~~s~~Tl~~ 49 (68)
T PF01106_consen 15 DGGDVELV-DVDDGVVYVRLT-GA-CSGCPSSDMTLKQ 49 (68)
T ss_dssp TTEEEEEE-EEETTEEEEEEE-SS-CCSSCCHHHHHHH
T ss_pred cCCcEEEE-EecCCEEEEEEE-eC-CCCCCCHHHHHHH
Confidence 77888887 788887777776 76 7788766655543
No 321
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.93 E-value=98 Score=24.44 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=27.9
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe--CC--ChHHHHHHHHHH
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS--CD--SVESHHDWIKAL 235 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS--~D--~~~~~~~~~~~~ 235 (276)
+.+|-..+|+.|++...-|. ++|+.+-.+. -+ +.+.++.|.+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~ 49 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHc
Confidence 34555889999998766555 4565544444 33 346777777764
No 322
>KOG0914|consensus
Probab=36.77 E-value=22 Score=31.11 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEE
Q psy1172 181 FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKV 217 (276)
Q Consensus 181 k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~V 217 (276)
+.-++.|| +.|.|-|+...|-+.++..+|...+..+
T Consensus 145 t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkF 180 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKF 180 (265)
T ss_pred eEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcc
Confidence 34588899 9999999999999999999997665443
No 323
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=36.45 E-value=94 Score=27.84 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q psy1172 179 PAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD 223 (276)
Q Consensus 179 ~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D 223 (276)
++-+|||.|| -..++.|..--..|..++.+| ..+.++-|...
T Consensus 145 ~~~~VVVHiY-~~~~~~C~~mn~~L~~LA~ky--p~vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIY-EPGFPRCEIMNSCLECLARKY--PEVKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE--TTSCCHHHHHHHHHHHHHH---TTSEEEEEEEC
T ss_pred CCcEEEEEEE-eCCCchHHHHHHHHHHHHHhC--CceEEEEEehh
Confidence 3568999999 788999999999999999998 55788877654
No 324
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=36.43 E-value=47 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=21.7
Q ss_pred ccceEEEECCCCcEEEEEecCCCCCCCHHH-HHHHHHhh
Q psy1172 51 TCRAVFIIDPAKKLRLSFLYPATTGRNFDE-ILRVLDSL 88 (276)
Q Consensus 51 ~~R~tfiIdp~g~I~~~~~~~~~~~r~~~e-ilr~l~~l 88 (276)
.+...|-||+||+|..+..-..+-...+++ ++++|++.
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~ 65 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRA 65 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 568999999999997666644444444544 34455433
No 325
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=36.32 E-value=1.2e+02 Score=23.41 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=29.0
Q ss_pred CCCc-eEEEeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEEecC
Q psy1172 18 KLPY-PIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP 71 (276)
Q Consensus 18 ~l~f-pllsD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~ 71 (276)
.+.| -+-.|.+.++|..||+. |+| +..+. .+|++.......
T Consensus 61 ~v~f~kVdid~~~~la~~f~V~--------sIP----Tli~f-kdGk~v~~~~G~ 102 (111)
T cd02965 61 RFRAAVVGRADEQALAARFGVL--------RTP----ALLFF-RDGRYVGVLAGI 102 (111)
T ss_pred cEEEEEEECCCCHHHHHHcCCC--------cCC----EEEEE-ECCEEEEEEeCc
Confidence 4554 66677888999999985 443 44444 689988877653
No 326
>KOG0913|consensus
Probab=36.09 E-value=8.1 Score=33.95 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=29.5
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEE
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVI 218 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv 218 (276)
-+.|.| ++.|+ +.|||.|..-.+.+.....--.+.|+.|-
T Consensus 37 ~l~gew-mi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~va 76 (248)
T KOG0913|consen 37 LLTGEW-MIEFG-APWCPSCSDLIPHLENFATVSLDLGVKVA 76 (248)
T ss_pred hhchHH-HHHhc-CCCCccccchHHHHhccCCccCCCceeEE
Confidence 356666 56677 89999999999988877666556666543
No 327
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=34.96 E-value=93 Score=23.72 Aligned_cols=43 Identities=7% Similarity=-0.026 Sum_probs=27.9
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--C--ChHHHHHHHHHH
Q psy1172 186 FSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--D--SVESHHDWIKAL 235 (276)
Q Consensus 186 ~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D--~~~~~~~~~~~~ 235 (276)
.+|-...|+.|++-...|. ++|+.+-.+.. + +...+++|.+..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 3454789999998766655 45666555554 3 245666776665
No 328
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=34.83 E-value=23 Score=25.26 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=35.8
Q ss_pred EEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172 185 LFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVD 250 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D 250 (276)
|.+|-...|+-|..-...|.++.. +.++.+-.|.+++.. +|.+++ +..+|++.-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~---~l~~~Y------~~~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDP---ELFEKY------GYRIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTH---HHHHHS------CTSTSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCH---HHHHHh------cCCCCEEEE
Confidence 455668889999977666665332 355888888887433 477788 556676654
No 329
>PRK12359 flavodoxin FldB; Provisional
Probab=32.76 E-value=1.4e+02 Score=24.93 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=29.1
Q ss_pred cCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172 177 SIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS 221 (276)
Q Consensus 177 ~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS 221 (276)
+++||.+.|+-- +++..+.......+..+++.++++|.++++--
T Consensus 76 dl~gK~vAlFG~-Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~ 119 (172)
T PRK12359 76 NLEGKIVALYGM-GDQLGYGEWFLDALGMLHDKLAPKGVKFVGYW 119 (172)
T ss_pred CCCCCEEEEEeC-CCCccchHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 578988775443 55444444445566778888888888887653
No 330
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=32.74 E-value=40 Score=30.24 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=25.4
Q ss_pred eEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhc
Q psy1172 54 AVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQ 89 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq 89 (276)
-||+|+.+|+| |.-..|++..++-+.|++..
T Consensus 233 mtF~Vn~~g~V-----YqkDLG~~t~~~A~ai~~Fd 263 (271)
T PF11453_consen 233 MTFMVNQDGQV-----YQKDLGPDTAAKAAAITSFD 263 (271)
T ss_pred EEEEECCCCcE-----EecccCcchHHHhhhhhccC
Confidence 79999999998 56677888888888877654
No 331
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=32.54 E-value=48 Score=22.47 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=24.2
Q ss_pred HHHhCCCCCCCCCCCCCCcccceEEEECCCCcEEEEE
Q psy1172 32 AVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSF 68 (276)
Q Consensus 32 a~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~ 68 (276)
++.+-++.|...-++-+- +.|-+|.+|.+|+|..+.
T Consensus 23 ~~~~Rvi~Pg~~vTmDyr-~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 23 AETVRVIRPGDAVTMDYR-PDRLNVEVDDDGVITRVR 58 (60)
T ss_pred ccceEEeCCCCcCcccCC-CCcEEEEECCCCcEEEEe
Confidence 555556655443222222 789999999999998765
No 332
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=31.73 E-value=2.3e+02 Score=25.70 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCCCCchhhhccC-CCCCceeeeeechhh-----hchhcccCCCCcccccccCCCCCcEEecCCCCeEEecccCCCC-eE
Q psy1172 111 RPGLVSKDSEGKL-TCKPIFSRIVSLFAE-----QNELQFAVPGGLIDRFAAALLPGCSLLGCQASLVILECSIPAF-WG 183 (276)
Q Consensus 111 ~p~~~~~~~~~~~-~~~~w~~~~~~~~~~-----~~~~~~a~~~~~~~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk-~v 183 (276)
.+=+|.+|++... ..+.|.......... .+......++.+.-...-..+|.+.| |=+- .. .++|+ -+
T Consensus 48 ~~FLS~~Ei~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~TYwP~~SD~~~P~LdL----GWP~-~~-~~~g~Tr~ 121 (284)
T PF07894_consen 48 RDFLSSEEIQYILENAEDPDPGSEEGGGEAEEGDGSADGDSSSGTYWPMQSDTEPPPLDL----GWPE-TP-SYKGVTRA 121 (284)
T ss_pred CCCCCHHHHHHHHHhccCCCCCCccccccccCCCCCccCCCCCcccCCCcCCCCCCCCCC----CCCC-CC-cccCCceE
Confidence 5667777775542 334444433221111 11112222333333334444555544 2111 22 57785 45
Q ss_pred EEEEEc-CCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC---ChHHHHHHHHHHHhcccCCeeEEEeeCCc
Q psy1172 184 ILFSHP-SDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD---SVESHHDWIKALVRDCILGLLINLSVDDF 252 (276)
Q Consensus 184 vL~f~p-a~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 252 (276)
-|.|-| ...-|+|+..+.++.+ +--+||||-+| +.+-.....+.-.+. +.+..++.|..
T Consensus 122 ~vy~qPp~~~~p~IKE~vR~~I~-------~A~kVIAIVMD~FTD~dIf~DLleAa~kR---~VpVYiLLD~~ 184 (284)
T PF07894_consen 122 TVYFQPPKDGQPHIKEVVRRMIQ-------QAQKVIAIVMDVFTDVDIFCDLLEAANKR---GVPVYILLDEQ 184 (284)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHH-------HhcceeEEEeeccccHHHHHHHHHHHHhc---CCcEEEEechh
Confidence 666665 5556666666655553 22468999887 566566666655444 55666666644
No 333
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=31.72 E-value=58 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcccccCCCCcCCCCCCCCcee
Q psy1172 78 FDEILRVLDSLQLTDTKKVATPVDWKVGMEIE 109 (276)
Q Consensus 78 ~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~ 109 (276)
...+++.+++++....-.+..|+.++.|...+
T Consensus 17 ~~l~~hn~~~~~i~~~GrvmiPqeFkrGKsIi 48 (67)
T TIGR02922 17 ELLLMHNLQSFPVNESGRVMIPQEFKRGKSII 48 (67)
T ss_pred HHHHHhhccCCCccccccEEcchHHcCCCeEE
Confidence 45677778888877766799999999998764
No 334
>PF00803 3A: 3A/RNA2 movement protein family; InterPro: IPR000603 This entry includes movement proteins from various viruses. The 3A protein is found in Bromoviruses and Cucumoviruses, whose genomes contain 3 RNA segments. The third segment (RNA 3) contains two proteins, the coat protein and the 3A protein. The function of the 3A protein is uncertain, but has been shown to be involved in cell-to-cell movement of the virus []. The entry also includes movement proteins from Dianthoviruses.
Probab=31.71 E-value=57 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=26.5
Q ss_pred EecCCCCeEEecccCCCCeEEEEEEcCCCCcccHH
Q psy1172 164 LLGCQASLVILECSIPAFWGILFSHPSDFTPVCTT 198 (276)
Q Consensus 164 L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~ 198 (276)
|..++|+.+++. +.|.|.++.|+|...||-+..
T Consensus 109 l~~v~~Q~v~l~--l~~gP~lv~F~p~ysiP~~~~ 141 (234)
T PF00803_consen 109 LEPVDGQEVTLS--LSDGPALVAFYPNYSIPLEDN 141 (234)
T ss_pred ccCcCCeEEEEE--CCCCCEEEEEeCCCceecccc
Confidence 556677888887 567799999999999997765
No 335
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=31.56 E-value=99 Score=23.62 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=25.8
Q ss_pred EcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-C---hHHHHHHHHHH
Q psy1172 188 HPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-S---VESHHDWIKAL 235 (276)
Q Consensus 188 ~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~---~~~~~~~~~~~ 235 (276)
|-...||.|++-...|.+ +|+.+-.++.. + .....+|.+..
T Consensus 4 Y~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 4 YGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc
Confidence 337889999987766664 56666666553 2 24455555555
No 336
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=31.24 E-value=20 Score=25.76 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=24.3
Q ss_pred eEEEECCCCcEEEEEecCCC-CCCCHHHHHHHHHh
Q psy1172 54 AVFIIDPAKKLRLSFLYPAT-TGRNFDEILRVLDS 87 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~-~~r~~~eilr~l~~ 87 (276)
..|.||+||.|..=...++. .|...+|+-+.|++
T Consensus 31 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 65 (82)
T PF02563_consen 31 GEYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQ 65 (82)
T ss_dssp CSEE--TTSEEEETTTEEEE-TT--HHHHHHHHHH
T ss_pred cceEECCCCcEeecccceEEECCCCHHHHHHHHHH
Confidence 48999999999887776666 67789999888865
No 337
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.18 E-value=44 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCCceEEEeCcc----HHHHHhCCCCCCCCCCCCCCcccceEEEE
Q psy1172 17 GKLPYPIIADQDR----SLAVQLGMLDPVEKDSKGMPLTCRAVFII 58 (276)
Q Consensus 17 ~~l~fpllsD~~~----~va~~yG~~~~~~~~~~g~~~~~R~tfiI 58 (276)
..+.||=..=..+ .+|+.||+..+.. |.. |.|.++|.
T Consensus 18 ~~~~f~pM~~~~R~~vHdla~~~gl~SeS~----d~E-p~R~V~v~ 58 (59)
T cd06006 18 RSLRFPPMRSPQRAFIHELAKDYGLYSESQ----DPE-PKRSVFVK 58 (59)
T ss_pred CceeCCCCCHHHHHHHHHHHHHcCCeeEec----CCC-CCcEEEEe
Confidence 4456665554443 7899999875543 333 68999884
No 338
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=29.71 E-value=82 Score=21.31 Aligned_cols=52 Identities=10% Similarity=-0.044 Sum_probs=28.8
Q ss_pred EcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172 188 HPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDD 251 (276)
Q Consensus 188 ~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 251 (276)
|-..+||.|.+-.-.|.+ ++..++.+-|+.... ...+.+.. + ...+|.+.+.
T Consensus 4 y~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~~~~--~~~~~~~n----p-~~~vP~L~~~ 55 (71)
T cd03060 4 YSFRRCPYAMRARMALLL-----AGITVELREVELKNK--PAEMLAAS----P-KGTVPVLVLG 55 (71)
T ss_pred EecCCCcHHHHHHHHHHH-----cCCCcEEEEeCCCCC--CHHHHHHC----C-CCCCCEEEEC
Confidence 336789999987666553 234456666655321 12343332 1 1257887654
No 339
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=28.81 E-value=97 Score=24.46 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=26.0
Q ss_pred cceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy1172 52 CRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSL 88 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~l 88 (276)
+.+.||+|.+|.++..-.|..........+.+.+...
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~ 38 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKK 38 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHH
Confidence 4689999999999999999443333445555555433
No 340
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=28.02 E-value=69 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.2
Q ss_pred cceEEEECCCCcEEEEEecC
Q psy1172 52 CRAVFIIDPAKKLRLSFLYP 71 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~~~ 71 (276)
.|..|+.||||.+..+..+|
T Consensus 103 ~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 103 GRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eeEEEEECCCCCEEEEEecc
Confidence 59999999999998887754
No 341
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=27.91 E-value=1.5e+02 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 201 ARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 201 ~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
+...+..+++++.|+.+..+|-|+........+..
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l 164 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQL 164 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhhccCcceeeeecccccccccccccc
Confidence 44666777888899999999999988888888877
No 342
>KOG3559|consensus
Probab=27.72 E-value=1.3e+02 Score=28.85 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred eEEEECCCCcEEEEEecCCC----------CC---------CCHHHHHHHHHhhcccccCCCCcCCCCCCCCceeeCCCC
Q psy1172 54 AVFIIDPAKKLRLSFLYPAT----------TG---------RNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGL 114 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~----------~~---------r~~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~p~~ 114 (276)
=.||+||||+|.+|.-- .+ +| .+.+|+-.+|.+-|...++.+.---+|+.---+-+.-..
T Consensus 91 F~fvva~dGkimYISET-aSvhLGLSQVElTGNsi~eYIH~~D~demna~L~~h~H~qeyeIErsfflrmkCvlakrnag 169 (598)
T KOG3559|consen 91 FIFVVAPDGKIMYISET-ASVHLGLSQVELTGNSIYEYIHPQDHDEMNAVLTAHQHLQEYEIERSFFLRMKCVLAKRNAG 169 (598)
T ss_pred eEEEEeCCCCEEEEecc-eeeeecceeeEeecchhhhhhcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhheecccc
Confidence 47999999999988531 11 11 245777777877777677777777788764333222221
Q ss_pred CchhhhccCCCCCceeeeeechhhhchhcccCCCCcccccccCCCCCcEEec
Q psy1172 115 VSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPGCSLLG 166 (276)
Q Consensus 115 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~G~~aPdF~L~~ 166 (276)
..-.-.+.+-|.+.+=..+.-...++.-+-- .+...+++|..+|.-.++.
T Consensus 170 lt~sg~kvihcSgylKir~y~~~m~p~dscy--qn~glvAvG~slP~saite 219 (598)
T KOG3559|consen 170 LTCSGYKVIHCSGYLKIRQYELDMSPNDSCY--QNVGLVAVGHSLPPSAITE 219 (598)
T ss_pred ccccCcceEeecCcceEEEEeeccCCccchh--heeeeEEecCCCCcccceE
Confidence 1111122234455443333333333321111 1222345777777655543
No 343
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=26.78 E-value=1.1e+02 Score=24.97 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCCh
Q psy1172 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSV 225 (276)
Q Consensus 184 vL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~ 225 (276)
|.+|| .--||+|-.-.+.|.++.+++.+-.++...++....
T Consensus 2 i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 45556 888999999999999999998444445555655443
No 344
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.31 E-value=1.1e+02 Score=23.55 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=31.3
Q ss_pred EecccCCC-CeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC
Q psy1172 173 ILECSIPA-FWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC 222 (276)
Q Consensus 173 ~l~~~~~g-k~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~ 222 (276)
.++ .|.+ ..-++-|+. |+.|. -..+....+++.+.|+++|-+|.
T Consensus 29 ~F~-~y~~~~~elvgf~~---CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 29 AFA-RYDDEDVELVGFFT---CGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccc-cCCCCCeEEEEEee---CCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 344 5654 466777774 55555 56777788888899999999976
No 345
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.08 E-value=75 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.4
Q ss_pred cceEEEECCCCcEEEEEec
Q psy1172 52 CRAVFIIDPAKKLRLSFLY 70 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~~ 70 (276)
.|+.|+.||||.+..+..|
T Consensus 107 ~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 107 QETFFLKDPSGNALEFKAF 125 (125)
T ss_pred eeEEEEECCCCCEEEEeeC
Confidence 4899999999998776543
No 346
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.86 E-value=78 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.2
Q ss_pred cceEEEECCCCcEEEEEe
Q psy1172 52 CRAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~ 69 (276)
.|..++.||||.+..+..
T Consensus 101 ~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 101 QRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred cEEEEEECCCCCEEEEec
Confidence 489999999999877654
No 347
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=25.73 E-value=59 Score=23.12 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.8
Q ss_pred eEEEECCCCcEEEEEe
Q psy1172 54 AVFIIDPAKKLRLSFL 69 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~ 69 (276)
.++++|++|+|.+.-.
T Consensus 7 ~i~v~D~~~~i~~~N~ 22 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQ 22 (110)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred eeEEECCCCEEEEEHH
Confidence 7899999999977654
No 348
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=25.48 E-value=42 Score=20.01 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=13.9
Q ss_pred cEEecCCCCeEEecccCC
Q psy1172 162 CSLLGCQASLVILECSIP 179 (276)
Q Consensus 162 F~L~~~~G~~v~l~~~~~ 179 (276)
-.|.|++|+.+.|.++|.
T Consensus 13 n~l~Dv~G~~Inl~~dFe 30 (32)
T PF10813_consen 13 NPLKDVKGNPINLYKDFE 30 (32)
T ss_pred CcccccCCCEEechhccc
Confidence 357788999998887764
No 349
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.25 E-value=77 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.7
Q ss_pred cceEEEECCCCcEEEEEec
Q psy1172 52 CRAVFIIDPAKKLRLSFLY 70 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~~ 70 (276)
.|+.++.||+|.+..+..|
T Consensus 107 ~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 107 ITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred ccEEEEECCCCCEEEeeeC
Confidence 4789999999998877654
No 350
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=24.76 E-value=1e+02 Score=31.09 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=37.8
Q ss_pred cccccCCCCCcEEecC-CCCeEEecccC--CCCeEEEEEEcCCCCcccHHHHHHHHHHH
Q psy1172 152 DRFAAALLPGCSLLGC-QASLVILECSI--PAFWGILFSHPSDFTPVCTTELARVLQLI 207 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~-~G~~v~l~~~~--~gk~vvL~f~pa~~cp~C~~el~~l~~~~ 207 (276)
.+.+|..+|++.+... +++.+.|.+.+ .|++.||.|-...-.+.....+..|.+..
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 4678999999999875 77777666455 68898888874444455555444444433
No 351
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.19 E-value=1e+02 Score=23.06 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=20.6
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEE
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIAL 220 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~V 220 (276)
|| -.+||.|..++..+...-. ...++++.+
T Consensus 2 ~Y-Dg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 2 FY-DGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred EE-CCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 56 7789999999988886510 123556655
No 352
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=24.11 E-value=1.4e+02 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=22.1
Q ss_pred eEEEECCCCcEEEEEe--cCCCCCCC---HHHHHHHHHhhc
Q psy1172 54 AVFIIDPAKKLRLSFL--YPATTGRN---FDEILRVLDSLQ 89 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~--~~~~~~r~---~~eilr~l~~lq 89 (276)
.+||+|++|++.+... ++...+.. ..++.+.+..++
T Consensus 52 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
T PF05228_consen 52 LIFILDPDGRVLYSSSKGYDFEPGSFDPIPPSLSQLISDLR 92 (161)
T ss_pred EEEEEcCCCCEEEEeccCcccCccccccccHHHHHHHHHHH
Confidence 8999999999998443 33333332 134555555544
No 353
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=24.05 E-value=61 Score=27.18 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHHHhhcccccCCCCcCCCCCCCCceeeC
Q psy1172 47 GMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVR 111 (276)
Q Consensus 47 g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l~~lq~~~~~~~~~p~~w~~g~~~~~~ 111 (276)
|..++.-.+|+.+ +|.+..++. ...-..+++++++-++++....+-.+-.|-.=--|.+||+-
T Consensus 27 ggNIt~~q~~~~~-~g~~~~iYm-EiEgi~d~e~l~~~lks~d~v~ev~i~~sle~iyGKRvIii 89 (218)
T COG1707 27 GGNITYAQQFLEK-DGEKALIYM-EIEGIDDFEKLLERLKSFDYVIEVEIHRSLEEIYGKRVIII 89 (218)
T ss_pred CCceEeeehhhhc-cCceEEEEE-EeeCCCCHHHHHHHhhccceEEEeeecchHHHHhCcEEEEE
Confidence 3344666778775 888888776 67767789999999999887665444444444446666543
No 354
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=23.94 E-value=2.2e+02 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172 204 LQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFK 253 (276)
Q Consensus 204 ~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 253 (276)
++..+.|+..|+.|+.+|..+.+...++.+..+ -+..++....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~------~k~~vl~G~SG 45 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK------GKTSVLLGQSG 45 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT------TSEEEEECSTT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc------CCEEEEECCCC
Confidence 456677888999999999988777778887773 24566655443
No 355
>PRK06184 hypothetical protein; Provisional
Probab=22.95 E-value=72 Score=30.90 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccccCCCCCcEEecCCCCeEEecccCC-CCeEEEEEE
Q psy1172 153 RFAAALLPGCSLLGCQASLVILECSIP-AFWGILFSH 188 (276)
Q Consensus 153 ~~~G~~aPdF~L~~~~G~~v~l~~~~~-gk~vvL~f~ 188 (276)
+.+|..+|+..+...+|+.+++.+.+. +++++|.|=
T Consensus 386 ~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~ 422 (502)
T PRK06184 386 LRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFG 422 (502)
T ss_pred CCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEec
Confidence 468999999999777777777776776 578888754
No 356
>PLN00115 pollen allergen group 3; Provisional
Probab=22.87 E-value=39 Score=26.48 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=10.0
Q ss_pred CCcCCCCCCCCc
Q psy1172 96 VATPVDWKVGME 107 (276)
Q Consensus 96 ~~~p~~w~~g~~ 107 (276)
.+.|+||++|.-
T Consensus 100 nViPa~Wk~G~t 111 (118)
T PLN00115 100 DVIPESFKAGSV 111 (118)
T ss_pred ceECCCCCCCCE
Confidence 568999999974
No 357
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=22.59 E-value=73 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.1
Q ss_pred ceEEEECCCCcEEEEEe
Q psy1172 53 RAVFIIDPAKKLRLSFL 69 (276)
Q Consensus 53 R~tfiIdp~g~I~~~~~ 69 (276)
=++|++|++|+|.++-.
T Consensus 12 ~~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 12 DGIFVIDEDGRILYVNQ 28 (113)
T ss_dssp SEEEEEETTSBEEEECH
T ss_pred ceEEEEeCcCeEEEECH
Confidence 38999999999977653
No 358
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.56 E-value=2.1e+02 Score=22.53 Aligned_cols=43 Identities=5% Similarity=-0.078 Sum_probs=27.7
Q ss_pred EEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeC--C--ChHHHHHHHHHH
Q psy1172 186 FSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSC--D--SVESHHDWIKAL 235 (276)
Q Consensus 186 ~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~--D--~~~~~~~~~~~~ 235 (276)
.+|-..+|+.|++-..-|. ++|+.+-.+.. + +.+.++.|.+..
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 3454789999998655444 46665555543 3 346777887775
No 359
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=68 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCCcc
Q psy1172 191 DFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDDFK 253 (276)
Q Consensus 191 ~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 253 (276)
+|||+|.+-.--+ -++.--+++..+-.|+.+..-+++-+. ..|++.-+++
T Consensus 7 dHCPfcvrarmi~-----Gl~nipve~~vL~nDDe~Tp~rmiG~K--------qVPiL~Kedg 56 (215)
T COG2999 7 DHCPFCVRARMIF-----GLKNIPVELHVLLNDDEETPIRMIGQK--------QVPILQKEDG 56 (215)
T ss_pred ccChHHHHHHHHh-----hccCCChhhheeccCcccChhhhhccc--------ccceEEcccc
Confidence 7899999753321 122334566666667776655554333 4666655443
No 360
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=22.13 E-value=1.6e+02 Score=21.55 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHH
Q psy1172 198 TELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKAL 235 (276)
Q Consensus 198 ~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~ 235 (276)
...+.+.+..++++++|+.++.+|.......+.+.+.+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 34466777778888889999999988877777777776
No 361
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=88 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=15.9
Q ss_pred EEEEcCCCCcccHHHHHHHHHH
Q psy1172 185 LFSHPSDFTPVCTTELARVLQL 206 (276)
Q Consensus 185 L~f~pa~~cp~C~~el~~l~~~ 206 (276)
..|+ +..||.|..-...|+.+
T Consensus 5 ~lfg-sn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFG-SNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeec-cccCcchHHHHHHHHHc
Confidence 4567 89999999777666654
No 362
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=21.77 E-value=5.5e+02 Score=25.03 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=35.2
Q ss_pred cccccCCCCCcEEecCCCCeEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy1172 152 DRFAAALLPGCSLLGCQASLVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALS 221 (276)
Q Consensus 152 ~~~~G~~aPdF~L~~~~G~~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS 221 (276)
.+.+|+.+|+..+.+.+|....+.+...+++++|.|-.. |.. .+. ....+.+...+..++.+.
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~~~~---~~~--~~~--~~~~~~~~~~~~~~~~~~ 472 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGWGCD---PLA--GLS--DEQRARWRALGARFVQVV 472 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCCceEEEEecCC---chh--cCC--HHHHHHHHHcCCeEEEEe
Confidence 456899999999877665544455233456778766311 211 111 111123456677777764
No 363
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.72 E-value=2.2e+02 Score=21.56 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeC
Q psy1172 201 ARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVD 250 (276)
Q Consensus 201 ~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D 250 (276)
+++.+..+..+++|+.+|+|+.+.+ +.++.++.. ...++++.+
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~-----~~~~~~p~~ 99 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGGK--LLEMAREHG-----VPVIIIPKG 99 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcC-----CcEEECCCC
Confidence 3444555566778999999986653 455555441 234666654
No 364
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=2.2e+02 Score=21.31 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=24.5
Q ss_pred CCCCeEEecccCCC--CeEEEEEEcCCCCcccHHHHHHHHH
Q psy1172 167 CQASLVILECSIPA--FWGILFSHPSDFTPVCTTELARVLQ 205 (276)
Q Consensus 167 ~~G~~v~l~~~~~g--k~vvL~f~pa~~cp~C~~el~~l~~ 205 (276)
.+|..+.+- +++. ..|+|-|- ++ |..|....-.|..
T Consensus 28 ~dGGdve~~-~i~~~~g~V~l~l~-Ga-C~gC~sS~~TLk~ 65 (93)
T COG0694 28 MDGGDVELV-GIDEEDGVVYLRLG-GA-CSGCPSSTVTLKN 65 (93)
T ss_pred ccCCeEEEE-EEecCCCeEEEEeC-Cc-CCCCcccHHHHHH
Confidence 378888887 6663 34555454 66 9999988776666
No 365
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.62 E-value=98 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.4
Q ss_pred cceEEEECCCCcEEEEEec
Q psy1172 52 CRAVFIIDPAKKLRLSFLY 70 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~~~~ 70 (276)
.|..+|.||+|.+..+..|
T Consensus 104 ~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 104 SREFTARDPEGNLWTFGTY 122 (122)
T ss_pred cEEEEEECCCCCEEEEecC
Confidence 3788899999998877654
No 366
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=21.49 E-value=3.4e+02 Score=21.89 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=37.4
Q ss_pred EeCccHHHHHhCCCCCCCCCCCCCCcccceEEEECCCCcE-EEEEecCC----CCCCCHHHHHHHHHhhcccccCC---C
Q psy1172 25 ADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKL-RLSFLYPA----TTGRNFDEILRVLDSLQLTDTKK---V 96 (276)
Q Consensus 25 sD~~~~va~~yG~~~~~~~~~~g~~~~~R~tfiIdp~g~I-~~~~~~~~----~~~r~~~eilr~l~~lq~~~~~~---~ 96 (276)
.|...+++..|++.. . .++|++=.+|.+ ........ ..-.+.++++.+++.+......| +
T Consensus 63 VDe~~dla~~y~I~~--------~----~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~ 130 (142)
T PLN00410 63 ITEVPDFNTMYELYD--------P----CTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLV 130 (142)
T ss_pred CCCCHHHHHHcCccC--------C----CcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 356669999999852 1 355544457764 22222111 01246789999998876554433 4
Q ss_pred CcCCCC
Q psy1172 97 ATPVDW 102 (276)
Q Consensus 97 ~~p~~w 102 (276)
.+|-+.
T Consensus 131 ~~~~~~ 136 (142)
T PLN00410 131 ISPKDY 136 (142)
T ss_pred ECCCcc
Confidence 445443
No 367
>PRK04011 peptide chain release factor 1; Provisional
Probab=21.36 E-value=1.4e+02 Score=28.47 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCcccHHH------HHHHHHHHHHHHhCCcEEEEEeCCChH
Q psy1172 191 DFTPVCTTE------LARVLQLIKEFEQRTCKVIALSCDSVE 226 (276)
Q Consensus 191 ~~cp~C~~e------l~~l~~~~~~~~~~gv~Vv~VS~D~~~ 226 (276)
..||.|..+ -+.+..+.+..+..|.+|..||.+.++
T Consensus 351 ~~c~~~~~~~~~~~~~~~v~~l~e~a~~~g~~v~iis~~~e~ 392 (411)
T PRK04011 351 KTCPKCGSELEIVEEEDIIEELSELAEQSGTKVEVISTDTEE 392 (411)
T ss_pred ccCcccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChh
Confidence 457777544 345677778888899999999987654
No 368
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=21.02 E-value=3.9e+02 Score=20.44 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCC-ChHHHHHHHHHH
Q psy1172 180 AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCD-SVESHHDWIKAL 235 (276)
Q Consensus 180 gk~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D-~~~~~~~~~~~~ 235 (276)
.++++|+=. ++.||.-..-..+|++.++...+. +.++-|-+- ......+-++++
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~vSn~IAe~~ 73 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPVSNAIAEDF 73 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHH
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchhHHHHHHHh
Confidence 567777777 888999999999999988887554 777777653 333333334444
No 369
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.91 E-value=2.3e+02 Score=19.42 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred EEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCChHHHHHHHHHHHhcccCCeeEEEeeCC
Q psy1172 187 SHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGLLINLSVDD 251 (276)
Q Consensus 187 f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 251 (276)
.|-..+||.|.+-.-.|.+. +..++++-|+.+. ....++.+.. + ...+|++.|.
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~-~~~~~~~~~~----p-~~~vP~l~~~ 57 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGS-PKRDKFLEKG----G-KVQVPYLVDP 57 (77)
T ss_pred EecCCCCchHHHHHHHHHHc-----CCcEEEEECCCCh-HHHHHHHHhC----C-CCcccEEEeC
Confidence 44367899999766555531 2234555553322 1223444333 1 1257888653
No 370
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=20.83 E-value=2.4e+02 Score=21.38 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCC--------hHHHHHHHHHH
Q psy1172 201 ARVLQLIKEFEQRTCKVIALSCDS--------VESHHDWIKAL 235 (276)
Q Consensus 201 ~~l~~~~~~~~~~gv~Vv~VS~D~--------~~~~~~~~~~~ 235 (276)
|...+..+.++++|+.++.+|-.+ ....+++.+++
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~ 70 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL 70 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC
Confidence 455667777777888888887765 44445555554
No 371
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=20.81 E-value=85 Score=21.90 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=12.6
Q ss_pred eEEEECCCCcEEEEEe
Q psy1172 54 AVFIIDPAKKLRLSFL 69 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~ 69 (276)
++|++|++|+|.++-.
T Consensus 3 ~i~i~d~~g~i~~~N~ 18 (104)
T PF13426_consen 3 GIFILDPDGRILYVNP 18 (104)
T ss_dssp EEEEEETTSBEEEE-H
T ss_pred EEEEECCcCcEEehhH
Confidence 6899999999977543
No 372
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.71 E-value=99 Score=22.17 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=11.6
Q ss_pred cceEEEECCCCcEEEE
Q psy1172 52 CRAVFIIDPAKKLRLS 67 (276)
Q Consensus 52 ~R~tfiIdp~g~I~~~ 67 (276)
.|..+|+||+|.+..+
T Consensus 92 ~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEEE-TTS-EEEE
T ss_pred eEEEEEECCCCCEEEe
Confidence 4899999999987654
No 373
>PF04486 SchA_CurD: SchA/CurD like domain; InterPro: IPR007575 Proteins having this domain have been identified mainly in species of the Streptomyces genus. Two of them are known to be part of gene clusters involved in the synthesis of polyketide-based spore pigments, homologous to clusters involved in the synthesis of polyketide antibiotics. Their function is unknown, but they has been speculated to contain a NAD(P) binding site []. Many of these proteins contain two copies of the domain.
Probab=20.43 E-value=2.1e+02 Score=22.27 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCCCceEEEeCccHHHHHhC-CCCCCCCCCCCCCcccceEEEECCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy1172 17 GKLPYPIIADQDRSLAVQLG-MLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVL 85 (276)
Q Consensus 17 ~~l~fpllsD~~~~va~~yG-~~~~~~~~~~g~~~~~R~tfiIdp~g~I~~~~~~~~~~~r~~~eilr~l 85 (276)
+-|.||+=.-...++|+.+- -..+......+.+ -.|++.++-.|-+||.+.+- .+...++|-+
T Consensus 4 hALtypvkpG~g~~vA~llA~~~~~~a~~d~~~~-l~~TtvF~~dd~VVR~vdv~-----Gdl~a~~rh~ 67 (114)
T PF04486_consen 4 HALTYPVKPGSGDAVARLLASYQDPAAAGDPATR-LLRTTVFQRDDRVVRVVDVE-----GDLDAALRHL 67 (114)
T ss_pred EEEEeecCCCcHHHHHHHHccCCChhhccCCCCc-eEEEEEEEECCEEEEEEEec-----CCHHHHHHHh
Confidence 45889999988999999886 3233222222223 36888888779999999872 2355555554
No 374
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=20.38 E-value=1.7e+02 Score=25.40 Aligned_cols=49 Identities=16% Similarity=-0.008 Sum_probs=26.1
Q ss_pred ccCCCCCcEEecCCCC------eEEecccCCCCeEEEEEEcCCCCcccHHHHHHHHHHHHH
Q psy1172 155 AAALLPGCSLLGCQAS------LVILECSIPAFWGILFSHPSDFTPVCTTELARVLQLIKE 209 (276)
Q Consensus 155 ~G~~aPdF~L~~~~G~------~v~l~~~~~gk~vvL~f~pa~~cp~C~~el~~l~~~~~~ 209 (276)
.|..--||-|.+.++. .++|. .++ +-.||.+=+---.+.+.+|.++.++
T Consensus 101 ~g~sR~Dfll~~~~~~~~vEVKsvtL~---~~~---~a~FPDApT~RG~kHL~eL~~l~~~ 155 (215)
T PF03749_consen 101 YGNSRFDFLLEDNGGKCYVEVKSVTLV---EDG---IAMFPDAPTERGRKHLRELAELAEE 155 (215)
T ss_pred eCCccEEEEEEcCCCCEEEEEeeeEec---cCC---cccCCCccchHHHHHHHHHHHHHhc
Confidence 5555567777765553 12333 111 2266666555555666666655543
No 375
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.29 E-value=4e+02 Score=20.36 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=25.1
Q ss_pred eEEEEEEcCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q psy1172 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDS 224 (276)
Q Consensus 182 ~vvL~f~pa~~cp~C~~el~~l~~~~~~~~~~gv~Vv~VS~D~ 224 (276)
..+++++ .+-.+.... ...+..++++++++.|+.|.+.+
T Consensus 104 ~~~iili-TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 104 PKVIIVL-TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CeEEEEE-CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccc
Confidence 3444555 444554433 45566677778899999998875
No 376
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=20.21 E-value=1.1e+02 Score=25.05 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=28.9
Q ss_pred eEEEECCCCcEEEEEecCCC-CCCCHHHHHHHHHh
Q psy1172 54 AVFIIDPAKKLRLSFLYPAT-TGRNFDEILRVLDS 87 (276)
Q Consensus 54 ~tfiIdp~g~I~~~~~~~~~-~~r~~~eilr~l~~ 87 (276)
..+.||+||.|..=+..++. .|+..+|+-+.|.+
T Consensus 21 ~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 55 (165)
T TIGR03027 21 GSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEE 55 (165)
T ss_pred cceEECCCCeEeecccCeEEECCCCHHHHHHHHHH
Confidence 46899999999998888877 77899999888865
Done!