RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1172
(276 letters)
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 177 bits (452), Expect = 1e-55
Identities = 70/118 (59%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
Query: 3 LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
+DI +Y+S KLP+PII D++R LA+ LGMLDP EKD KGMP+T R VF+ P K
Sbjct: 83 SKDINAYNSEE-PTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDK 141
Query: 63 KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
KL+LS LYPATTGRNFDEILRV+ SLQLT K+VATPVDWK G + V P + ++++
Sbjct: 142 KLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAK 199
Score = 106 bits (268), Expect = 3e-28
Identities = 35/52 (67%), Positives = 38/52 (73%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
WGILFSHP DFTPVCTTEL R +L EF +R K+IALS DSVE H W K
Sbjct: 33 WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSK 84
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 175 bits (445), Expect = 2e-54
Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Query: 3 LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
+D++ S G +PYPIIAD+ R LAV+LGM+DP E+ S GMPLTCRAVFII P K
Sbjct: 81 SEDVKCLSGVK---GDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDK 137
Query: 63 KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSE 120
KL+LS LYPATTGRNF EILRV+DSLQLT KKVATP DW+ G V PG+ +++++
Sbjct: 138 KLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADWQPGDRCMVVPGVSAEEAK 195
Score = 108 bits (272), Expect = 1e-28
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
WG+LFSHP DFTPV TTEL RV+QL +F++R K+IALSCD+V H +W +
Sbjct: 31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSE 82
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 173 bits (442), Expect = 4e-54
Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 3 LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
++DI+ Y K PI+ D+ R LA +L ++D EKD G+PLTCR +F I P K
Sbjct: 83 IEDIKYYG----KLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEK 138
Query: 63 KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGK 122
K++ + LYPATTGRN EILRVL SLQLT T VATPV+W G + V P L +
Sbjct: 139 KIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCCVIPTLQDDEISKH 198
Query: 123 L 123
Sbjct: 199 F 199
Score = 108 bits (271), Expect = 1e-28
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
W ILFSHP+DFTPVCTTELA + ++ ++F + CK+I SC+S ESH WI+
Sbjct: 33 WAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIE 84
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 149 bits (377), Expect = 5e-44
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 3 LQDIQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK 62
+ I+ + ++P+PIIAD ++A +LG+L T R VFI+D
Sbjct: 85 KEWIERH-----IGVRIPFPIIADPQGTVARRLGLLHAESATH-----TVRGVFIVDARG 134
Query: 63 KLRLSFLYPATTGRNFDEILRVLDSLQLTDTKKVATPVDWK 103
+R YP GR DEILR++ +L+L D+ K A P DW
Sbjct: 135 VIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWP 175
Score = 105 bits (264), Expect = 2e-27
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
W +LFSHP+DFTPVCTTE + ++F++ +I LS DSV SH W +
Sbjct: 35 WFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKE 86
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 76.1 bits (188), Expect = 5e-17
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G G++ +P++AD +S++ +L + + L R F+ID K+R + +
Sbjct: 92 GGIGQVSFPMVADITKSISRDYDVLFE-----EAIAL--RGAFLIDKNMKVRHAVINDLP 144
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME-IEVRPGLVSK 117
GRN DE+LR++D+L + P W+ G + ++ V++
Sbjct: 145 LGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAE 189
Score = 72.2 bits (178), Expect = 2e-15
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
ILF P DFT VC TE+ + +K+F ++ VI +S DS + H W V +
Sbjct: 35 GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGI 94
Query: 242 G 242
G
Sbjct: 95 G 95
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 74.6 bits (184), Expect = 3e-16
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G G + + +++D +S++ +L + L RA +ID ++ +
Sbjct: 111 GGIGNIKHTLLSDITKSISKDYNVLFD-----DSVSL--RAFVLIDMNGIVQHLLVNNLA 163
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DEILR++D++Q + P +W+ G
Sbjct: 164 IGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKV 197
Score = 70.8 bits (174), Expect = 6e-15
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +L+ +P DFT VC +E+ + + + F +R +++ S DS +H W K + +
Sbjct: 54 YVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGI 113
Query: 242 G 242
G
Sbjct: 114 G 114
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 76.1 bits (188), Expect = 5e-16
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
KV EI+V PGL + +GK++ +PIF++I S+ E + A PGGL+ L P
Sbjct: 236 KVDQEIKVLPGL-RVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAI-GTYLDPS 292
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 72.2 bits (178), Expect = 2e-15
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G G + + +I+D +S+A +L + + L RA +ID ++ +
Sbjct: 90 GGIGNIKHTLISDISKSIARSYDVLFN-----ESVAL--RAFVLIDKQGVVQHLLVNNLA 142
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME-IEVRPGLVSK 117
GR+ DEILR++D+LQ + P +W+ G E ++ V+K
Sbjct: 143 LGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESMKPSEEGVAK 187
Score = 69.5 bits (171), Expect = 1e-14
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +L+ +P DFT VC +E+ + + + F++R +++ S DS +H W K + +
Sbjct: 33 YVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGI 92
Query: 242 G 242
G
Sbjct: 93 G 93
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 73.2 bits (180), Expect = 2e-15
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + P+++D ++ G+ G L R +FIID LR L
Sbjct: 151 GLGPIRIPLLSDLTHQISKDYGVYLEDS----GHTL--RGLFIIDDKGILRQITLNDLPV 204
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DE LR++ + Q TD P WK G E
Sbjct: 205 GRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSE 237
Score = 70.5 bits (173), Expect = 1e-14
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ + F +P DFT VC TE+ ++EF +V+A S DS +H WI R L
Sbjct: 93 YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL 152
Query: 242 G 242
G
Sbjct: 153 G 153
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 72.3 bits (178), Expect = 2e-15
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + P+++D ++ G+ G L R +FIID LR L
Sbjct: 108 GLGPIRIPLLSDLTHQISKDYGVYLEDS----GHTL--RGLFIIDDKGILRQITLNDLPV 161
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DE LR++ + Q TD P WK G E
Sbjct: 162 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 194
Score = 70.0 bits (172), Expect = 1e-14
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ + F +P DFT VC TE+ ++EF +V+A S DS +H WI R L
Sbjct: 50 YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGL 109
Query: 242 G 242
G
Sbjct: 110 G 110
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 73.8 bits (182), Expect = 3e-15
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
KVG EIE+RPG V + G++ +PI + IVSL A ++ A PGGL+ L P
Sbjct: 244 KVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVG-VGTKLDPY 300
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 71.2 bits (175), Expect = 7e-15
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + P+++D ++ G+ + G L R +FIID LR +
Sbjct: 137 GLGPMKIPLLSDLTHQISKDYGVYLEDQ----GHTL--RGLFIIDEKGVLRQITMNDLPV 190
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DE LR++ + Q TD P WK G +
Sbjct: 191 GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSD 223
Score = 70.4 bits (173), Expect = 2e-14
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ + F +P DFT VC TE+ + EF +V+A S DS +H WI + L
Sbjct: 79 YLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGL 138
Query: 242 G 242
G
Sbjct: 139 G 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 72.7 bits (179), Expect = 8e-15
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 103 KVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSLFAEQNELQFAVPGGLIDRFAAALLPG 161
KVG EIE+RPG+ + K KP+ ++IVSL A L+ A PGGLI L P
Sbjct: 242 KVGDEIEIRPGIKVTE-GNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIG-VGTTLDPY 298
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 66.8 bits (164), Expect = 1e-13
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + P++AD+ +++A G+LD G+ R VFIIDP KLR +
Sbjct: 96 GLGPMAIPMLADKTKAIARAYGVLDEDS----GVAY--RGVFIIDPNGKLRQIIINDMPI 149
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GRN +E++R++++LQ + P +WK G
Sbjct: 150 GRNVEEVIRLVEALQFVEEHGEVCPANWKKGDA 182
Score = 65.7 bits (161), Expect = 3e-13
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +LF +P DFT VC TE+ + K F + +VI+ SCDS SH W + L
Sbjct: 38 YVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGL 97
Query: 242 G 242
G
Sbjct: 98 G 98
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 66.9 bits (164), Expect = 2e-13
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G G + P++AD+ + ++ G+ D + G R +FIIDP LR +
Sbjct: 128 GGLGHMKIPLLADRKQEISKAYGVFDEED----GNAF--RGLFIIDPNGILRQITINDKP 181
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DE LR+LD+ Q + PV+WK G
Sbjct: 182 VGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQH 215
Score = 64.6 bits (158), Expect = 1e-12
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +LF +P+DFT VC TE+ ++EF R C+VIA S DS SH W + L
Sbjct: 71 YVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGL 130
Query: 242 G 242
G
Sbjct: 131 G 131
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 66.4 bits (163), Expect = 2e-13
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 22/128 (17%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G++ PI+AD+ + + G+L + G+ R +FIIDP + LR +
Sbjct: 96 GLGQMNIPILADKTKCIMKSYGVLKEED----GVAY--RGLFIIDPKQNLRQITVNDLPV 149
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVS 134
GR+ DE LR++ + Q + P +WK G T KP +
Sbjct: 150 GRDVDEALRLVKAFQFVEKHGEVCPANWK----------------PGDKTMKPDPEKSKE 193
Query: 135 LFAEQNEL 142
F +L
Sbjct: 194 YFGAVAKL 201
Score = 64.9 bits (159), Expect = 7e-13
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
W +LF +P DFT VC TE+ + +KEF C+V+A S DS SH W + L
Sbjct: 38 WLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGL 97
Query: 242 G 242
G
Sbjct: 98 G 98
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 66.9 bits (164), Expect = 2e-13
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + P++AD + SL+ G+L E G+ L R +FIIDP +R +
Sbjct: 112 GLGPINIPLLADTNHSLSRDYGVLIEEE----GVAL--RGLFIIDPKGVIRHITINDLPV 165
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVS 134
GRN DE LR++++ Q TD P +W G T KP
Sbjct: 166 GRNVDEALRLVEAFQWTDKNGTVLPCNWT----------------PGAATIKPTVEDSKE 209
Query: 135 LFAEQNE 141
F N+
Sbjct: 210 YFEAANK 216
Score = 65.4 bits (160), Expect = 7e-13
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +L P FT V TE+ + K+FE++ +V+ S DS S W ++ L
Sbjct: 54 YVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGL 113
Query: 242 G 242
G
Sbjct: 114 G 114
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 66.4 bits (163), Expect = 2e-13
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G L P++AD R L+ G+L E G+ R +FIID LR +
Sbjct: 94 GLGPLNIPLLADVTRRLSEDYGVLKTDE----GIAY--RGLFIIDGKGVLRQITVNDLPV 147
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ DE LR++ + Q TD P WK G +
Sbjct: 148 GRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSD 180
Score = 64.9 bits (159), Expect = 6e-13
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +LF +P DFT V TE+ ++F + C+V+ +S DS +H WI ++ L
Sbjct: 36 YVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGL 95
Query: 242 G 242
G
Sbjct: 96 G 96
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 66.5 bits (163), Expect = 2e-13
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G G + + +++D ++ ++ +L L R +FIID +R +
Sbjct: 115 GGIGNVEFTLVSDINKDISKNYNVLYD-----NSFAL--RGLFIIDKNGCVRHQTVNDLP 167
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GRN E+LR +DS+ DT P++WK G +
Sbjct: 168 IGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQK 201
Score = 64.6 bits (158), Expect = 1e-12
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ L +P ++T VC TE+ + IK+FE + +++ +S DSV SH W + +
Sbjct: 58 YCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGI 117
Query: 242 G 242
G
Sbjct: 118 G 118
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 65.7 bits (161), Expect = 4e-13
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 15 GDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
G G + +++D + ++ G+L G+ L R +FIIDP ++ +
Sbjct: 116 GLGHMNIALLSDLTKQISRDYGVLLEGP----GLAL--RGLFIIDPNGVIKHLSVNDLPV 169
Query: 75 GRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GR+ +E LR++ + Q + +P +W
Sbjct: 170 GRSVEETLRLVKAFQFVEAHGEVSPANWTPESP 202
Score = 65.0 bits (159), Expect = 9e-13
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCIL 241
+ +LF +P DFT VC TE+ EF C+V+A+S DS SH WI ++ L
Sbjct: 58 YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGL 117
Query: 242 G 242
G
Sbjct: 118 G 118
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 64.9 bits (159), Expect = 5e-13
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
E K+ Y +I D +L + E G+ RA F++DP ++ +
Sbjct: 86 ETIAKIKYAMIGDPTGALTRNFDNMREDE----GLAD--RATFVVDPQGIIQAIEVTAEG 139
Query: 74 TGRNFDEILRVLDSLQLTDTKK-VATPVDWKVGME-IEVRPGLVSK 117
GR+ ++LR + + Q P WK G + LV K
Sbjct: 140 IGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGK 185
Score = 62.9 bits (154), Expect = 3e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
W + F +P+DFT V TEL V +E ++ V ++S D+ +H W +
Sbjct: 32 WSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 84
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 64.9 bits (159), Expect = 6e-13
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
G + Y +I D ++++ Q +L+ G+ R FIIDP ++ +
Sbjct: 87 PAVGSIEYIMIGDPSQTISRQFDVLNEET----GLAD--RGTFIIDPDGVIQAIEINADG 140
Query: 74 TGRNFDEILRVLDSLQLTDTKK-VATPVDWKVGME-IEVRPGLVSK 117
GR+ ++ + + Q P W+ G E ++ +V K
Sbjct: 141 IGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETLKPSLDIVGK 186
Score = 62.9 bits (154), Expect = 2e-12
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
W I+ +P+DF+ VC TEL V + E ++ +V ++S D+ H W +
Sbjct: 33 WSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHEN 85
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 63.4 bits (155), Expect = 1e-12
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
+L P FT +C EL ++ + EFE +A+S +H W
Sbjct: 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQ 90
Score = 54.6 bits (132), Expect = 2e-09
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 17 GKLPYPIIAD--QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATT 74
+P+++D +++ G V + G+ R F++D + +R + +
Sbjct: 91 SGFTFPLLSDFWPHGAVSQAYG----VFNEQAGIAN--RGTFVVDRSGIIRFAEMKQPGE 144
Query: 75 GRNFDEILRVLDSLQ 89
R+ L +L
Sbjct: 145 VRDQRLWTDALAALT 159
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 63.8 bits (156), Expect = 2e-12
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 14 EGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPAT 73
LP+P+++D R L+ G+L+ G+ R FI+DP +++ +
Sbjct: 101 NDLKTLPFPMLSDIKRELSQAAGVLNA-----DGVAD--RVTFIVDPNNEIQFVSATAGS 153
Query: 74 TGRNFDEILRVLDSLQLTDTKKVATPVDWKVGME 107
GRN DE+LRVLD+LQ + ++ +W+ G
Sbjct: 154 VGRNVDEVLRVLDALQ---SDEL-CASNWRKGDP 183
Score = 62.3 bits (152), Expect = 6e-12
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDW 231
W ++F P DFT VC TE+A +L EFE R +++ +S DS +H W
Sbjct: 47 WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW 96
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 50.7 bits (122), Expect = 4e-08
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
+L +P+ FT VCT E+ + +F Q V+ +S D S+ + +
Sbjct: 32 VVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKE 83
Score = 41.8 bits (99), Expect = 5e-05
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGR 76
KL + I++D +R + + + G L RAVF+ID K+R ++ T
Sbjct: 86 KLNFTILSDYNREVVKKYNVAW-EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEP 144
Query: 77 NFDEILRVLDSL 88
+DEI +V+ SL
Sbjct: 145 PYDEIEKVVKSL 156
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 48.8 bits (117), Expect = 2e-07
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
+L P+ F+PVCT EL + + E+ +V+A+S DS +
Sbjct: 35 PAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKD 86
Score = 46.1 bits (110), Expect = 1e-06
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFL-YPATTGR 76
+L + +++D +R + + E + RAVFI+ P + ++
Sbjct: 89 RLAFNLLSDYNREVIKLYNVY--HEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEP 146
Query: 77 NFDEILRVLDSLQ 89
++DE++R + +
Sbjct: 147 DYDEVVREANKIA 159
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 45.4 bits (108), Expect = 4e-06
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
W +L+ +P D TP +TE L+ +FEQ V+ +S DSV+SH +
Sbjct: 53 WLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCA 104
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 45.0 bits (107), Expect = 4e-06
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
++ + PS TPVC TE + +++ E V +S D + + ++
Sbjct: 51 VIITVPSLDTPVCETETKKFNEIMAGMEG--VDVTVVSMDLPFAQKRFCES 99
Score = 36.1 bits (84), Expect = 0.005
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 43 KDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL 88
+ + RAVFIID K+ L P T N+DE++ + L
Sbjct: 124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 44.7 bits (106), Expect = 7e-06
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
+L PS T VC + + QL E E V+ +S D + + A GL
Sbjct: 82 VLNIFPSIDTGVCAASVRKFNQLAGELEN--TVVLCISSDLPFAQSRFCGA------EGL 133
Query: 244 LINLSVDDFKEVE 256
+++ + +
Sbjct: 134 SNVITLSTLRGAD 146
Score = 33.1 bits (76), Expect = 0.050
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 19 LPYPIIADQDRSLAV--QLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTG 75
L I R G+ + LT RAV ++D + S L TT
Sbjct: 133 LSNVITLSTLRGADFKQAYGVAI---TEGPLAGLTARAVVVLDGQDNVIYSELVNEITTE 189
Query: 76 RNFDEILRVL 85
N+D L L
Sbjct: 190 PNYDAALAAL 199
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 44.2 bits (105), Expect = 8e-06
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 182 WGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
W +++ +P D TP TTE L+ EF++ K++ +S DSV+SH ++
Sbjct: 37 WLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCA 88
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 43.7 bits (104), Expect = 1e-05
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIK 233
+L+ +P D TP T E + + VI +S D + SH + +
Sbjct: 33 VLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKE 82
Score = 34.5 bits (80), Expect = 0.017
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
KLP+ +++D D+ + G +KG L R F+ID +R + +
Sbjct: 85 KLPFILVSDPDKKIRELYG--------AKGFILPARITFVIDKKGIIRHIYNSQMNPANH 136
Query: 78 FDEILRVLDSLQ 89
+E L+ L ++
Sbjct: 137 VNEALKALKQIK 148
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 43.8 bits (104), Expect = 1e-05
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
+L PS T +C+T+ R + + + V+ +S D + W A
Sbjct: 46 VLSVVPSIDTGICSTQTRRFNEELAGLDN--TVVLTVSMDLPFAQKRWCGA 94
Score = 35.3 bits (82), Expect = 0.009
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 50 LTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL 88
L RAVF++D +R + NF+ + +L
Sbjct: 124 LLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 43.4 bits (103), Expect = 2e-05
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRDCILGL 243
+L PS TPVC T + + V+ +S D + + A G
Sbjct: 48 LLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDLPFAQKRFCGA------EGT 98
Query: 244 LINLSVDDFKE 254
+ F++
Sbjct: 99 ENVMPASAFRD 109
Score = 35.7 bits (83), Expect = 0.006
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 43 KDSKGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSLQ 89
D L RA+ +I + + L P N++ L L +
Sbjct: 120 ADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATS 167
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 43.1 bits (102), Expect = 2e-05
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
+L PS T VC T + + Q + V+ +S D + + A
Sbjct: 47 VLNIFPSIDTGVCATSVRKFNQQAAKLSN--TIVLCISADLPFAQARFCGA 95
Score = 30.4 bits (69), Expect = 0.33
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 27 QDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGR-NFDEILRVL 85
++ +L QLG+ + LT RAV ++D + S L N++ L VL
Sbjct: 108 RNHALHSQLGVD---IQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 164
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 43.0 bits (102), Expect = 2e-05
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
++ PS T VC + + + + V+ +S D + W +
Sbjct: 50 LISVVPSIDTGVCDQQTRKFNS---DASKEEGIVLTISADLPFAQKRWCAS 97
Score = 32.6 bits (75), Expect = 0.060
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 46 KGMPLTCRAVFIIDPAKKLRLSFLYP-ATTGRNFDEILRVLDSL 88
+ + L RAVF++D K+ + T +FD L ++
Sbjct: 123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI 166
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 38.0 bits (89), Expect = 0.001
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
I+ PS T VC + R + + V +S D + W A
Sbjct: 48 IISVIPSIDTGVCDAQTRRFNEEAAKLGD--VNVYTISADLPFAQARWCGA 96
Score = 33.8 bits (78), Expect = 0.027
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 46 KGMPLTCRAVFIIDPAKKLRLSFLYPATTG-RNFDEILRVLDSL 88
K + L R+VF++D K+ + T N+++ + +L
Sbjct: 122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 37.5 bits (87), Expect = 0.002
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKA 234
++ + S L K+I ++ DS S
Sbjct: 52 LIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDSPSSLARARHE 102
Score = 36.0 bits (83), Expect = 0.008
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 43 KDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG-RNFDEILRVLDSLQLTDTKKVATPVD 101
+ T A+ + D A + S T +FD I ++L + + A +
Sbjct: 128 TEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE-----QQAMAAE 182
Query: 102 WKVGMEIEVRPGLVSKDSE 120
+ + + K +E
Sbjct: 183 REAAEARQEQDAEREKGTE 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 34/271 (12%), Positives = 79/271 (29%), Gaps = 85/271 (31%)
Query: 41 VEKDSKGMPLTCRAV-------FIIDPAKKLRLSFLYPATTGRNFDEIL----------R 83
++ ++ + + F+ + K + D I+ R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 84 VLDSLQLTDTKKVATPV--------DWKVGMEIEVRPGLVSKDSEGKLTCKPIFSRIVSL 135
+ +L + V V + + I+ S + + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 136 FAEQN--------ELQFAV----PGGLIDRFAAALLPGCSLLGC-QASLVI-------LE 175
FA+ N +L+ A+ P + L+ G +LG + + + ++
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNV------LIDG--VLGSGKTWVALDVCLSYKVQ 177
Query: 176 CSIP--AFWGILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHH---- 229
C + FW + + C + + L Q+ I + S H
Sbjct: 178 CKMDFKIFW-LNLKN-------CNSPETVLEML-----QKLLYQIDPNWTSRSDHSSNIK 224
Query: 230 ---DWIKALVRDCIL------GLLINLSVDD 251
I+A +R + LL+ + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLV---LLN 252
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 34.9 bits (81), Expect = 0.011
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 184 ILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESH 228
+ F +P TP T + + +E ++ V LS DSV S
Sbjct: 39 VFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSADSVTSQ 82
Score = 26.1 bits (58), Expect = 10.0
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAK-KLRLSFLYPAT-TG 75
LPY +++D R LG K + + R+ FI K K + + P
Sbjct: 90 NLPYHLLSDPKREFIGLLG-----AKKTPLS-GSIRSHFIFVDGKLKFKRVKISPEVSVN 143
Query: 76 RNFDEILRVLDSLQ 89
E+L V + +
Sbjct: 144 DAKKEVLEVAEKFK 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.020
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 39 DPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRNFDEILRVLDS---LQLTDTKK 95
D + KD L V AK +++ +Y G + LRVL ++ D
Sbjct: 437 DLINKD-----LVKNNVSF--NAKDIQIP-VYDTFDGSD----LRVLSGSISERIVDC-- 482
Query: 96 VAT-PVDWKVGMEIEVR------PG-------LVSKDSEGK 122
+ PV W+ + + PG L ++ +G
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 32.7 bits (74), Expect = 0.16
Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 84/262 (32%)
Query: 6 IQSYSSCGEGDGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLR 65
++ EG +P P+++ + + Q+ D V K + +P K++
Sbjct: 324 LEDSLENNEG---VPSPMLSISNLTQE-QV--QDYVNKTNSHLP----------AGKQVE 367
Query: 66 LSFLY--PATTGRNFDEIL----RVLDSLQLTDTKKVATPVDWKVGMEIEVRPGLVSKDS 119
+S L +N ++ + L L LT K A G++ P S
Sbjct: 368 IS-LVNGA----KNL--VVSGPPQSLYGLNLTLRKAKAPS-----GLDQSRIPF-----S 410
Query: 120 EGKLTCK----PIFS------------RIVSLFAEQNEL----QFAVP------GGLIDR 153
E KL P+ S I + N +P G +
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 154 FAAALLPGCSLLGCQASLVILECSIPAFWGIL----FSHPSDFTPVCTTELARVLQLIKE 209
+ ++ +V +P W +H DF P + + L
Sbjct: 471 LSGSISE---------RIVDCIIRLPVKWETTTQFKATHILDFGP---GGASGLGVLTHR 518
Query: 210 FEQRT-CKVIALSCDSVESHHD 230
+ T +VI +++ + D
Sbjct: 519 NKDGTGVRVIVAG--TLDINPD 538
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 30.1 bits (68), Expect = 0.45
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG 75
D L YP I D A LG + +P T ++D + FL T
Sbjct: 120 DNGLDYPSIYDPPFMTAASLGGVPA-----SVIPTT----IVLDKQHRPAAVFLREVT-- 168
Query: 76 RNFDEILRVLDSL 88
++L V L
Sbjct: 169 --SKDVLDVALPL 179
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG 75
D LP+ ++ D D+++ G + P + +I ++ +++
Sbjct: 83 DYGLPFTVMYDADKAVGQAFGT--------QVYPTS----VLIGKKGEILKTYV----GE 126
Query: 76 RNFDEILRVLDSL 88
+F ++ + +D+
Sbjct: 127 PDFGKLYQEIDTA 139
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 27.7 bits (62), Expect = 3.0
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 16 DGKLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTG 75
P++ D D+ + G G+P T F+ID + +
Sbjct: 83 KTGFTLPVLLDADKRVGKLYGT--------TGVPET----FVIDRHGVILKKVVGAME-- 128
Query: 76 RNFDEILRVLDSL 88
+ E++ L++
Sbjct: 129 WDHPEVIAFLNNE 141
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 27.9 bits (62), Expect = 3.6
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 210 FEQRTCKVIA-LSCDSV-ESHH-DWIKALVRDCILGLLINLSVDDFKEV 255
+ Q+ +A L S E HH ++++ + LS ++++V
Sbjct: 160 YLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQV 208
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A
{Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A*
3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A
2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A*
2ovv_A* 2ovy_A* ...
Length = 331
Score = 27.4 bits (61), Expect = 4.5
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 210 FEQRTCKVIA-LSCDSV-ESHH-DWIKALVRDCILGLLINLSVDDFKEV 255
+ Q+ +A L S E HH ++++ + LS ++++V
Sbjct: 129 YLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQV 177
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for
structural genomics of infec diseases, csgid; 2.01A
{Staphylococcus aureus subsp}
Length = 341
Score = 27.5 bits (61), Expect = 5.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 215 CKVIALSCDSVESHHDWIKALVR 237
C V+ L + ++ H D +A V+
Sbjct: 237 CCVLVLRGELLDQHKDVAQAFVQ 259
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 26.5 bits (59), Expect = 6.0
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 14/71 (19%)
Query: 18 KLPYPIIADQDRSLAVQLGMLDPVEKDSKGMPLTCRAVFIIDPAKKLRLSFLYPATTGRN 77
L + + D D + + P F+ T +
Sbjct: 78 NLNFTNLNDADGVIWARYN--------VPWQPAF----VFYRADGTST--FVNNPTAAMS 123
Query: 78 FDEILRVLDSL 88
DE+ + +L
Sbjct: 124 QDELSGRVAAL 134
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 27.1 bits (61), Expect = 6.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 137 AEQNELQFAVPGGL----IDRFAAALLPGCS 163
A++ +L V +D+ A + P S
Sbjct: 1 AQRVQLTATVSENQLGQRLDQALAEMFPDYS 31
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 26.8 bits (60), Expect = 6.2
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 183 GILFSHPSDFTPVCTTELARVLQLIKEFEQRTCKVIALSCDSVESHHD------WIKAL- 235
GILFS F P + L L +F++ IA C +V +D W K +
Sbjct: 45 GILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIA--CIAV---NDPFVMAAWGKTVD 99
Query: 236 VRDCI-------------LGLLINLSVDDFKEVEGRSRRF 262
I LG ++ S RSRR+
Sbjct: 100 PEHKIRMLADMHGEFTRALGTELDSSKMLGNN---RSRRY 136
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 26.5 bits (59), Expect = 7.2
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 196 CTTELARVLQLIKEFEQRTCKVIALSCDSVESHHDWIKALVRD 238
C E ++ + + +V A + + +W+K +
Sbjct: 46 CQQETPKLYDWWLKNRAKGIQVYAANIE--RKDEEWLKFIRSK 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.423
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,263,883
Number of extensions: 247962
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 90
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)