BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11721
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 38 KHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLR 74
K+HFGQ +E ++ L+ SF++ D G++R
Sbjct: 448 KYHFGQRFPKEVYQEAQEYLARLSQSFQIIDTSGQVR 484
>pdb|3JXH|C Chain C, Ca-Like Domain Of Human Ptprg
Length = 265
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 13 VVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWV 57
VVH ++ET L +R +L L + + L T E+V W+
Sbjct: 169 VVHHEKETFLDPFVLRDLLPASLGSYYRYTGSLTTPPCSEIVEWI 213
>pdb|3JXG|A Chain A, Ca-Like Domain Of Mouse Ptprg
pdb|3JXG|B Chain B, Ca-Like Domain Of Mouse Ptprg
pdb|3JXG|C Chain C, Ca-Like Domain Of Mouse Ptprg
pdb|3JXG|D Chain D, Ca-Like Domain Of Mouse Ptprg
pdb|3KLD|B Chain B, Ptprg Cntn4 Complex
Length = 269
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 13 VVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWV 57
VVH ++ET L +R +L L + + L T E+V W+
Sbjct: 173 VVHHEKETFLDPFILRDLLPASLGSYYRYTGSLTTPPCSEIVEWI 217
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MDHIRLNKIQDW--VVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVN 55
+DH R+ KI + V+++ L+ ++++ L KH F GL +ANE ++
Sbjct: 245 LDHDRIAKIPEGAVVINISRGDLINDDALIEALR----SKHLFAAGLDVFANEPAID 297
>pdb|2GJG|A Chain A, Crystal Structure Of A Pilz-Containing Protein (Pp4397)
From Pseudomonas Putida Kt2440 At 2.25 A Resolution
Length = 248
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 3 HIRLNKIQDWVVHLDEET---LLTENSIRGVLNFVLDGKH 39
H R ++ Q +VVH+D E+ L E R F+ +G+H
Sbjct: 40 HDRSHRFQSYVVHVDRESNTLALDEXIPRDGEKFIENGEH 79
>pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
Synthetase From E. Coli
pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
Synthetase From E. Coli
Length = 498
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 33 FVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADD 69
++L +HH GQ +I +E W+ L D+ V+ +
Sbjct: 225 WLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSXE 261
>pdb|3KYF|A Chain A, Crystal Structure Of P4397 Complexed With C-Di-Gmp
Length = 231
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 3 HIRLNKIQDWVVHLDEET---LLTENSIRGVLNFVLDGKH 39
H R ++ Q +VVH+D E+ L E R F+ +G+H
Sbjct: 32 HDRSHRFQSYVVHVDRESNTLALDEMIPRDGEKFIENGEH 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,156,768
Number of Sequences: 62578
Number of extensions: 115804
Number of successful extensions: 282
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)