Query psy11721
Match_columns 99
No_of_seqs 32 out of 34
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 17:14:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13632 Glyco_trans_2_3: Glyc 98.9 1.8E-09 3.9E-14 75.5 5.0 83 12-98 1-83 (193)
2 PF13641 Glyco_tranf_2_3: Glyc 97.4 0.00028 6E-09 49.9 4.7 84 9-97 86-169 (228)
3 cd04179 DPM_DPG-synthase_like 95.6 0.028 6E-07 38.1 4.6 80 11-97 81-161 (185)
4 cd04192 GT_2_like_e Subfamily 95.4 0.037 8E-07 38.5 4.6 41 9-49 82-122 (229)
5 PF00535 Glycos_transf_2: Glyc 94.1 0.17 3.8E-06 32.5 5.1 39 11-49 80-119 (169)
6 cd06436 GlcNAc-1-P_transferase 94.1 0.097 2.1E-06 37.0 4.2 53 9-62 89-141 (191)
7 cd06439 CESA_like_1 CESA_like_ 93.1 0.12 2.6E-06 37.1 3.4 42 10-51 110-151 (251)
8 cd06421 CESA_CelA_like CESA_Ce 92.8 0.22 4.8E-06 34.9 4.4 42 9-50 84-126 (234)
9 cd06442 DPM1_like DPM1_like re 91.9 0.16 3.4E-06 35.5 2.7 41 10-50 79-119 (224)
10 cd04190 Chitin_synth_C C-termi 91.1 1.2 2.7E-05 32.9 6.9 87 8-98 72-160 (244)
11 cd06438 EpsO_like EpsO protein 88.7 1.1 2.4E-05 31.0 4.7 51 8-60 80-130 (183)
12 cd06427 CESA_like_2 CESA_like_ 88.3 0.94 2E-05 32.9 4.3 42 9-50 84-127 (241)
13 TIGR03469 HonB hopene-associat 88.2 0.82 1.8E-05 36.6 4.3 41 10-50 134-174 (384)
14 cd06423 CESA_like CESA_like is 87.8 1.5 3.2E-05 27.8 4.5 40 9-48 78-118 (180)
15 cd02510 pp-GalNAc-T pp-GalNAc- 87.5 1 2.3E-05 34.0 4.2 42 9-50 83-124 (299)
16 TIGR01556 rhamnosyltran L-rham 87.5 1.6 3.4E-05 32.5 5.1 29 9-37 73-101 (281)
17 cd02525 Succinoglycan_BP_ExoA 87.0 1.4 3.1E-05 30.8 4.5 39 9-47 81-119 (249)
18 cd06435 CESA_NdvC_like NdvC_li 86.0 1.3 2.9E-05 31.4 3.9 27 10-36 85-111 (236)
19 COG1216 Predicted glycosyltran 85.8 2.1 4.4E-05 33.0 5.1 41 10-50 85-126 (305)
20 cd04185 GT_2_like_b Subfamily 85.1 2.3 5.1E-05 29.4 4.7 40 9-48 79-118 (202)
21 cd04470 S1_EF-P_repeat_1 S1_EF 84.6 0.81 1.8E-05 28.8 2.0 32 7-39 10-45 (61)
22 cd02526 GT2_RfbF_like RfbF is 84.5 3.3 7.1E-05 29.2 5.3 31 9-39 75-108 (237)
23 cd06434 GT2_HAS Hyaluronan syn 84.0 1.7 3.7E-05 30.6 3.7 42 9-50 77-118 (235)
24 PLN02726 dolichyl-phosphate be 83.4 1.9 4.2E-05 31.5 3.9 37 9-45 93-129 (243)
25 cd06437 CESA_CaSu_A2 Cellulose 82.6 2.3 5E-05 30.4 3.9 40 9-48 87-126 (232)
26 cd06420 GT2_Chondriotin_Pol_N 81.6 3.3 7.1E-05 27.9 4.2 30 9-38 79-108 (182)
27 PF02434 Fringe: Fringe-like; 80.5 0.96 2.1E-05 35.0 1.4 25 8-32 85-109 (252)
28 cd06913 beta3GnTL1_like Beta 1 77.6 6.5 0.00014 27.8 4.9 42 9-50 84-126 (219)
29 cd02511 Beta4Glucosyltransfera 73.6 5.4 0.00012 29.0 3.7 30 10-39 72-101 (229)
30 cd04195 GT2_AmsE_like GT2_AmsE 72.8 8.1 0.00018 26.5 4.2 37 9-45 80-117 (201)
31 cd04188 DPG_synthase DPG_synth 72.5 9.8 0.00021 26.7 4.7 40 10-49 83-122 (211)
32 PF13506 Glyco_transf_21: Glyc 72.1 6.9 0.00015 28.4 3.9 33 8-40 30-62 (175)
33 cd00761 Glyco_tranf_GTA_type G 71.9 7 0.00015 24.1 3.5 32 9-40 77-109 (156)
34 cd04186 GT_2_like_c Subfamily 71.6 6.3 0.00014 25.5 3.3 29 9-37 74-102 (166)
35 cd02520 Glucosylceramide_synth 69.3 7.9 0.00017 27.1 3.6 37 9-45 86-122 (196)
36 cd04196 GT_2_like_d Subfamily 67.7 9.4 0.0002 26.1 3.7 28 9-36 79-106 (214)
37 cd06433 GT_2_WfgS_like WfgS an 67.6 13 0.00029 24.7 4.3 27 9-35 75-101 (202)
38 cd04184 GT2_RfbC_Mx_like Myxoc 66.7 11 0.00024 25.7 3.9 27 9-35 83-109 (202)
39 cd02522 GT_2_like_a GT_2_like_ 66.0 17 0.00036 25.2 4.7 41 10-50 73-113 (221)
40 TIGR03111 glyc2_xrt_Gpos1 puta 64.4 16 0.00035 29.9 5.0 42 9-50 131-173 (439)
41 PRK11204 N-glycosyltransferase 62.8 14 0.0003 29.3 4.2 41 9-49 134-175 (420)
42 PRK10073 putative glycosyl tra 61.9 13 0.00027 29.5 3.8 41 9-49 85-127 (328)
43 cd04187 DPM1_like_bac Bacteria 56.8 23 0.00049 24.1 4.0 29 9-37 80-108 (181)
44 PRK14583 hmsR N-glycosyltransf 56.1 24 0.00052 28.8 4.6 39 8-46 154-193 (444)
45 PRK00529 elongation factor P; 55.2 11 0.00024 28.3 2.4 32 7-39 75-110 (186)
46 TIGR03472 HpnI hopanoid biosyn 54.7 20 0.00043 28.5 3.9 36 9-44 126-161 (373)
47 PF01132 EFP: Elongation facto 54.2 2.5 5.5E-05 25.9 -1.0 31 8-39 10-44 (55)
48 cd04191 Glucan_BSP_ModH Glucan 51.6 22 0.00048 27.3 3.6 52 8-61 94-146 (254)
49 cd03292 ABC_FtsE_transporter F 51.6 25 0.00054 25.2 3.7 51 11-64 155-206 (214)
50 COG1122 CbiO ABC-type cobalt t 50.6 29 0.00064 26.9 4.2 55 13-69 159-214 (235)
51 cd03225 ABC_cobalt_CbiO_domain 49.6 26 0.00055 25.1 3.5 50 12-64 154-204 (211)
52 PF10111 Glyco_tranf_2_2: Glyc 49.6 65 0.0014 24.5 5.9 25 9-33 88-112 (281)
53 cd03230 ABC_DR_subfamily_A Thi 49.2 32 0.00068 24.2 3.8 50 12-64 115-165 (173)
54 PF00970 FAD_binding_6: Oxidor 48.4 8.8 0.00019 24.4 0.8 38 59-97 3-41 (99)
55 COG0418 PyrC Dihydroorotase [N 48.1 18 0.00039 30.6 2.8 53 1-64 2-54 (344)
56 cd03259 ABC_Carb_Solutes_like 47.0 28 0.00061 25.0 3.4 52 11-64 149-201 (213)
57 cd03261 ABC_Org_Solvent_Resist 46.3 28 0.00061 25.5 3.3 51 12-64 156-207 (235)
58 TIGR00038 efp translation elon 45.3 20 0.00043 26.9 2.4 31 8-39 75-109 (184)
59 COG4586 ABC-type uncharacteriz 44.4 24 0.00052 29.7 3.0 50 13-64 177-227 (325)
60 cd03293 ABC_NrtD_SsuB_transpor 43.1 34 0.00073 24.8 3.3 51 12-64 151-202 (220)
61 cd03297 ABC_ModC_molybdenum_tr 42.7 34 0.00074 24.7 3.3 51 11-63 150-201 (214)
62 COG1136 SalX ABC-type antimicr 42.3 33 0.00071 27.0 3.3 39 13-51 163-202 (226)
63 cd03301 ABC_MalK_N The N-termi 42.0 40 0.00086 24.2 3.5 50 13-64 151-201 (213)
64 cd03229 ABC_Class3 This class 41.1 41 0.0009 23.7 3.4 39 13-51 121-160 (178)
65 TIGR00960 3a0501s02 Type II (G 39.3 54 0.0012 23.6 3.9 50 12-64 158-208 (216)
66 cd03265 ABC_DrrA DrrA is the A 38.9 46 0.001 24.1 3.5 51 12-64 151-202 (220)
67 cd03294 ABC_Pro_Gly_Bertaine T 38.6 43 0.00094 25.4 3.4 39 13-51 181-220 (269)
68 PLN03153 hypothetical protein; 38.3 33 0.00072 30.6 3.0 26 7-32 208-233 (537)
69 cd03219 ABC_Mj1267_LivG_branch 38.2 49 0.0011 24.1 3.5 49 13-64 164-213 (236)
70 KOG1614|consensus 38.0 73 0.0016 26.5 4.8 72 7-97 125-210 (291)
71 TIGR02673 FtsE cell division A 37.6 58 0.0013 23.3 3.8 49 13-64 158-207 (214)
72 COG1215 Glycosyltransferases, 37.5 82 0.0018 24.5 4.8 32 9-40 137-168 (439)
73 PRK11701 phnK phosphonate C-P 37.4 48 0.001 24.7 3.4 41 11-51 170-211 (258)
74 cd03226 ABC_cobalt_CbiO_domain 37.2 53 0.0012 23.5 3.5 48 13-63 147-195 (205)
75 cd03295 ABC_OpuCA_Osmoprotecti 37.1 47 0.001 24.5 3.3 39 13-51 156-195 (242)
76 PRK12426 elongation factor P; 37.0 32 0.00069 26.4 2.4 30 10-39 77-110 (185)
77 TIGR01277 thiQ thiamine ABC tr 36.1 55 0.0012 23.6 3.5 39 13-51 149-188 (213)
78 TIGR01188 drrA daunorubicin re 36.0 58 0.0013 25.2 3.8 24 13-36 145-169 (302)
79 PRK13915 putative glucosyl-3-p 36.0 66 0.0014 25.4 4.1 36 9-44 115-152 (306)
80 PF14258 DUF4350: Domain of un 35.9 67 0.0015 19.5 3.4 32 9-40 34-66 (70)
81 PF13558 SbcCD_C: Putative exo 35.9 54 0.0012 21.4 3.1 24 12-35 65-89 (90)
82 PF01078 Mg_chelatase: Magnesi 35.6 73 0.0016 24.8 4.2 40 11-50 107-148 (206)
83 cd04463 S1_EF_like S1_EF_like: 35.5 37 0.0008 20.1 2.1 28 11-39 11-42 (55)
84 TIGR03269 met_CoM_red_A2 methy 35.4 48 0.001 27.6 3.4 50 13-64 448-498 (520)
85 cd03214 ABC_Iron-Siderophores_ 35.2 55 0.0012 23.1 3.3 40 12-51 117-157 (180)
86 TIGR02315 ABC_phnC phosphonate 35.2 53 0.0012 24.0 3.3 40 12-51 165-205 (243)
87 TIGR02178 yeiP elongation fact 34.8 41 0.00088 25.8 2.7 30 10-39 77-110 (186)
88 PRK14578 elongation factor P; 34.6 36 0.00078 26.0 2.4 30 10-39 79-112 (187)
89 COG0231 Efp Translation elonga 34.5 30 0.00066 24.9 1.9 31 9-39 78-112 (131)
90 PRK14250 phosphate ABC transpo 34.1 54 0.0012 24.3 3.2 52 11-64 150-202 (241)
91 TIGR03030 CelA cellulose synth 34.0 89 0.0019 27.7 5.0 40 9-48 228-268 (713)
92 PRK13537 nodulation ABC transp 33.9 66 0.0014 25.2 3.8 24 13-36 159-183 (306)
93 PRK10575 iron-hydroxamate tran 33.9 57 0.0012 24.6 3.4 41 11-51 166-207 (265)
94 KOG0065|consensus 33.4 43 0.00093 33.1 3.1 42 4-46 942-984 (1391)
95 TIGR01184 ntrCD nitrate transp 33.2 61 0.0013 23.9 3.4 39 13-51 135-174 (230)
96 cd03255 ABC_MJ0796_Lo1CDE_FtsE 33.0 71 0.0015 22.9 3.6 39 13-51 161-200 (218)
97 TIGR03746 conj_TIGR03746 integ 32.9 24 0.00052 27.8 1.2 26 3-29 137-165 (202)
98 cd03268 ABC_BcrA_bacitracin_re 32.7 73 0.0016 22.8 3.6 48 13-63 147-195 (208)
99 PRK10018 putative glycosyl tra 32.7 63 0.0014 25.2 3.5 28 9-36 85-112 (279)
100 PRK13543 cytochrome c biogenes 32.7 73 0.0016 23.1 3.7 38 13-51 158-196 (214)
101 PRK10419 nikE nickel transport 32.6 58 0.0013 24.7 3.3 40 12-51 171-211 (268)
102 PRK09493 glnQ glutamine ABC tr 32.6 67 0.0015 23.6 3.5 38 13-51 157-195 (240)
103 PRK11288 araG L-arabinose tran 32.2 68 0.0015 26.6 3.8 49 13-64 417-466 (501)
104 PRK13549 xylose transporter AT 32.1 65 0.0014 26.7 3.7 49 13-64 426-475 (506)
105 PRK11614 livF leucine/isoleuci 31.6 71 0.0015 23.4 3.5 38 13-51 158-196 (237)
106 PRK09984 phosphonate/organopho 31.4 68 0.0015 24.0 3.4 39 13-51 173-212 (262)
107 cd03258 ABC_MetN_methionine_tr 31.0 71 0.0015 23.3 3.4 40 12-51 160-200 (233)
108 cd03235 ABC_Metallic_Cations A 31.0 87 0.0019 22.5 3.8 52 13-67 153-205 (213)
109 PRK13548 hmuV hemin importer A 30.5 67 0.0015 24.2 3.3 39 13-51 161-200 (258)
110 PF06540 GMAP: Galanin message 30.4 45 0.00097 22.0 2.0 16 20-35 19-34 (62)
111 PF02493 MORN: MORN repeat; I 30.3 39 0.00085 16.5 1.4 13 40-52 10-22 (23)
112 cd03296 ABC_CysA_sulfate_impor 30.2 71 0.0015 23.5 3.3 40 12-51 156-196 (239)
113 cd03256 ABC_PhnC_transporter A 30.1 76 0.0016 23.1 3.4 51 12-64 164-215 (241)
114 PRK11308 dppF dipeptide transp 30.0 65 0.0014 25.7 3.3 39 13-51 175-214 (327)
115 PRK10762 D-ribose transporter 29.7 81 0.0018 26.1 3.9 49 13-64 416-465 (501)
116 PRK11153 metN DL-methionine tr 29.3 72 0.0016 25.5 3.4 38 13-50 161-199 (343)
117 cd03222 ABC_RNaseL_inhibitor T 29.1 93 0.002 22.8 3.7 56 13-70 92-148 (177)
118 PRK10938 putative molybdenum t 29.0 78 0.0017 26.0 3.6 37 13-50 156-193 (490)
119 PF01076 Mob_Pre: Plasmid reco 28.9 28 0.00061 25.9 1.0 8 13-20 124-131 (196)
120 cd03257 ABC_NikE_OppD_transpor 28.7 81 0.0018 22.7 3.3 39 13-51 166-205 (228)
121 PRK15112 antimicrobial peptide 28.6 76 0.0017 24.0 3.3 39 13-51 170-209 (267)
122 TIGR01166 cbiO cobalt transpor 28.6 78 0.0017 22.4 3.2 37 13-50 148-185 (190)
123 PRK11248 tauB taurine transpor 28.6 78 0.0017 23.9 3.3 38 13-50 149-187 (255)
124 PRK11247 ssuB aliphatic sulfon 28.5 79 0.0017 24.1 3.4 40 12-51 153-193 (257)
125 cd03216 ABC_Carb_Monos_I This 28.5 98 0.0021 21.7 3.6 38 13-51 103-141 (163)
126 PRK13547 hmuV hemin importer A 28.3 76 0.0016 24.4 3.3 39 13-51 175-214 (272)
127 PRK11264 putative amino-acid A 28.2 99 0.0022 22.7 3.8 39 12-51 164-203 (250)
128 cd03269 ABC_putative_ATPase Th 28.0 97 0.0021 22.2 3.6 50 12-64 148-198 (210)
129 cd03215 ABC_Carb_Monos_II This 28.0 96 0.0021 21.9 3.6 50 12-64 124-174 (182)
130 PF03314 DUF273: Protein of un 27.8 35 0.00076 27.4 1.4 31 6-38 38-69 (222)
131 TIGR03269 met_CoM_red_A2 methy 27.8 77 0.0017 26.3 3.4 39 13-51 189-228 (520)
132 PRK10584 putative ABC transpor 27.8 80 0.0017 22.9 3.2 41 11-51 165-206 (228)
133 PRK13634 cbiO cobalt transport 27.7 83 0.0018 24.3 3.4 39 13-51 166-205 (290)
134 PF13704 Glyco_tranf_2_4: Glyc 27.4 22 0.00048 22.4 0.2 17 7-23 69-85 (97)
135 cd03253 ABCC_ATM1_transporter 27.4 1.2E+02 0.0026 22.0 4.1 37 13-51 158-195 (236)
136 cd03267 ABC_NatA_like Similar 27.3 1E+02 0.0022 22.9 3.7 50 13-64 174-224 (236)
137 PRK11831 putative ABC transpor 27.2 84 0.0018 23.8 3.3 40 11-50 162-202 (269)
138 TIGR02314 ABC_MetN D-methionin 27.1 85 0.0018 25.5 3.5 39 13-51 161-200 (343)
139 PRK15134 microcin C ABC transp 26.9 82 0.0018 26.3 3.4 57 10-68 443-500 (529)
140 TIGR03771 anch_rpt_ABC anchore 26.9 96 0.0021 22.7 3.5 38 13-51 134-172 (223)
141 TIGR02324 CP_lyasePhnL phospho 26.8 95 0.0021 22.4 3.4 39 12-51 169-208 (224)
142 TIGR02323 CP_lyasePhnK phospho 26.5 99 0.0021 22.9 3.5 39 13-51 169-208 (253)
143 TIGR03411 urea_trans_UrtD urea 26.5 1.1E+02 0.0025 22.3 3.8 37 13-51 164-201 (242)
144 PRK09700 D-allose transporter 26.5 93 0.002 25.8 3.7 49 13-64 430-479 (510)
145 TIGR03005 ectoine_ehuA ectoine 26.3 93 0.002 23.1 3.3 39 13-51 167-206 (252)
146 TIGR02770 nickel_nikD nickel i 26.2 93 0.002 22.8 3.3 39 13-51 146-185 (230)
147 cd03266 ABC_NatA_sodium_export 26.1 1.1E+02 0.0023 22.0 3.6 38 13-51 157-195 (218)
148 PRK15439 autoinducer 2 ABC tra 25.7 96 0.0021 25.9 3.6 49 13-64 424-473 (510)
149 TIGR02211 LolD_lipo_ex lipopro 25.5 96 0.0021 22.3 3.2 39 13-51 162-201 (221)
150 PF08262 Lem_TRP: Leucophaea m 25.4 25 0.00055 15.7 0.1 7 83-89 2-8 (10)
151 TIGR03740 galliderm_ABC gallid 25.4 1.2E+02 0.0026 22.0 3.7 38 13-51 145-183 (223)
152 PRK04542 elongation factor P; 25.3 77 0.0017 24.3 2.8 30 10-39 79-112 (189)
153 PRK11300 livG leucine/isoleuci 25.2 1E+02 0.0023 22.7 3.4 40 12-51 173-213 (255)
154 PRK10771 thiQ thiamine transpo 25.2 1E+02 0.0022 22.6 3.3 39 13-51 150-189 (232)
155 PRK14269 phosphate ABC transpo 25.1 1.6E+02 0.0034 21.8 4.4 51 13-67 163-214 (246)
156 PRK11022 dppD dipeptide transp 25.1 95 0.0021 24.7 3.4 39 13-51 174-213 (326)
157 PRK13536 nodulation factor exp 25.0 1.1E+02 0.0024 24.6 3.8 24 13-36 193-217 (340)
158 PRK09473 oppD oligopeptide tra 24.9 91 0.002 24.9 3.3 39 13-51 182-221 (330)
159 PRK10982 galactose/methyl gala 24.9 1E+02 0.0022 25.4 3.6 49 13-64 412-461 (491)
160 PRK13649 cbiO cobalt transport 24.7 1.1E+02 0.0023 23.2 3.5 40 11-51 164-204 (280)
161 TIGR03608 L_ocin_972_ABC putat 24.6 1.1E+02 0.0024 21.6 3.4 40 11-51 153-193 (206)
162 PRK09544 znuC high-affinity zi 24.6 1E+02 0.0022 23.4 3.3 39 13-51 141-180 (251)
163 PTZ00061 DNA-directed RNA poly 24.6 1.4E+02 0.003 23.6 4.1 41 9-51 64-104 (205)
164 cd03298 ABC_ThiQ_thiamine_tran 24.6 1.1E+02 0.0024 21.8 3.4 50 12-63 148-198 (211)
165 PF09050 SNN_linker: Stannin u 24.5 31 0.00068 19.1 0.4 9 17-25 13-21 (26)
166 PRK13638 cbiO cobalt transport 24.3 1.1E+02 0.0024 23.1 3.5 39 12-51 156-195 (271)
167 TIGR02633 xylG D-xylose ABC tr 23.7 1.1E+02 0.0023 25.3 3.5 37 13-50 162-199 (500)
168 PRK13646 cbiO cobalt transport 23.6 1.1E+02 0.0024 23.5 3.4 39 13-51 166-205 (286)
169 cd03233 ABC_PDR_domain1 The pl 23.5 1.2E+02 0.0026 21.9 3.4 51 13-64 139-190 (202)
170 PRK11288 araG L-arabinose tran 23.4 1.1E+02 0.0024 25.3 3.6 38 13-51 161-199 (501)
171 COG1124 DppF ABC-type dipeptid 23.3 79 0.0017 25.7 2.6 54 13-68 162-216 (252)
172 PRK13641 cbiO cobalt transport 23.1 1.3E+02 0.0027 23.2 3.6 38 13-51 166-204 (287)
173 TIGR00968 3a0106s01 sulfate AB 23.1 1.2E+02 0.0026 22.3 3.4 39 13-51 151-190 (237)
174 cd03231 ABC_CcmA_heme_exporter 23.0 1.2E+02 0.0027 21.7 3.4 37 13-50 146-183 (201)
175 cd03218 ABC_YhbG The ABC trans 22.9 1.4E+02 0.003 21.6 3.7 50 12-64 153-203 (232)
176 smart00243 GAS2 Growth-Arrest- 22.8 51 0.0011 22.3 1.2 14 85-98 41-54 (73)
177 PRK13539 cytochrome c biogenes 22.7 1.2E+02 0.0026 21.9 3.3 38 13-51 148-186 (207)
178 TIGR02769 nickel_nikE nickel i 22.6 1.2E+02 0.0025 22.9 3.3 40 12-51 170-210 (265)
179 cd03260 ABC_PstB_phosphate_tra 22.5 1.6E+02 0.0034 21.4 3.9 48 13-64 162-210 (227)
180 PF11444 DUF2895: Protein of u 22.4 48 0.001 25.9 1.2 15 3-17 136-150 (199)
181 TIGR02633 xylG D-xylose ABC tr 22.3 1.3E+02 0.0029 24.8 3.8 49 13-64 424-473 (500)
182 PF13761 DUF4166: Domain of un 22.3 22 0.00047 26.0 -0.7 31 55-87 123-153 (162)
183 TIGR03410 urea_trans_UrtE urea 22.3 1.4E+02 0.003 21.7 3.6 39 13-51 152-191 (230)
184 PRK14247 phosphate ABC transpo 22.2 1.7E+02 0.0037 21.6 4.1 37 13-51 167-204 (250)
185 PRK10982 galactose/methyl gala 22.2 1.3E+02 0.0027 24.9 3.7 38 13-51 155-193 (491)
186 PRK14249 phosphate ABC transpo 22.1 1.7E+02 0.0037 21.6 4.1 49 12-64 167-216 (251)
187 TIGR01187 potA spermidine/putr 21.9 1.2E+02 0.0026 24.0 3.4 40 12-51 120-160 (325)
188 PRK11231 fecE iron-dicitrate t 21.7 1.4E+02 0.003 22.3 3.5 37 13-50 159-196 (255)
189 PRK15134 microcin C ABC transp 21.7 1.2E+02 0.0026 25.3 3.5 39 13-51 177-216 (529)
190 COG1131 CcmA ABC-type multidru 21.7 1.2E+02 0.0026 23.8 3.4 26 13-38 157-183 (293)
191 TIGR01288 nodI ATP-binding ABC 21.5 1.4E+02 0.0031 23.0 3.7 25 12-36 155-180 (303)
192 PRK14245 phosphate ABC transpo 21.5 1.8E+02 0.0039 21.5 4.1 37 13-51 167-204 (250)
193 KOG3708|consensus 21.3 92 0.002 28.5 2.8 44 5-48 93-150 (681)
194 PF12554 MOZART1: Mitotic-spin 21.3 1E+02 0.0022 19.1 2.3 21 19-39 16-36 (48)
195 PRK11629 lolD lipoprotein tran 21.2 1.3E+02 0.0027 22.1 3.2 39 13-51 166-205 (233)
196 PRK13637 cbiO cobalt transport 21.2 1.3E+02 0.0028 23.1 3.4 39 13-51 165-204 (287)
197 PRK14268 phosphate ABC transpo 21.1 1.6E+02 0.0034 22.0 3.8 37 13-51 175-212 (258)
198 PLN03111 DNA-directed RNA poly 21.1 1.7E+02 0.0037 23.0 4.0 40 9-51 66-105 (206)
199 PRK13409 putative ATPase RIL; 20.9 1.3E+02 0.0029 26.2 3.7 51 13-65 474-525 (590)
200 PRK11124 artP arginine transpo 20.8 1.6E+02 0.0035 21.6 3.7 39 12-51 161-200 (242)
201 PF13096 CENP-P: CENP-A-nucleo 20.7 54 0.0012 25.5 1.1 14 11-24 119-132 (177)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 20.4 1.6E+02 0.0035 21.6 3.6 49 13-64 163-212 (224)
203 PRK10895 lipopolysaccharide AB 20.3 1.5E+02 0.0033 21.7 3.4 38 13-51 158-196 (241)
204 PRK10714 undecaprenyl phosphat 20.2 1.7E+02 0.0036 23.2 3.9 29 9-37 90-118 (325)
205 PRK03695 vitamin B12-transport 20.2 1.7E+02 0.0037 21.9 3.7 49 13-64 154-203 (248)
206 cd06197 FNR_like_2 FAD/NAD(P) 20.2 47 0.001 24.5 0.7 34 63-97 3-37 (220)
207 PRK13409 putative ATPase RIL; 20.1 1.7E+02 0.0037 25.5 4.2 48 13-64 233-281 (590)
208 cd03237 ABC_RNaseL_inhibitor_d 20.1 1.4E+02 0.0031 22.6 3.4 39 13-51 136-175 (246)
No 1
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=98.92 E-value=1.8e-09 Score=75.50 Aligned_cols=83 Identities=28% Similarity=0.286 Sum_probs=70.1
Q ss_pred eEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecccchhhhhhhhhhcCcceeeecccE
Q psy11721 12 WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSY 91 (99)
Q Consensus 12 Wi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~DD~~r~~~q~~~~~~P~fG~hGs~ 91 (99)
||+++|+||.++|++++.+.++..+.+..++||-+.+.+. .|+++.+++... ..+..+.+.+...+++|.+ ++|+.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~G~~ 76 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR--GSLLTRLQDFEY-AISHGLSRLSQSSLGRPLF-LSGSG 76 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC--CChhheeehhhh-hhhhhhhHHHHHhcCCCcc-ccCcc
Confidence 8999999999999999999999996677999999998643 688888887764 6677788888778788776 78999
Q ss_pred EEEeecc
Q psy11721 92 VVTQFLS 98 (99)
Q Consensus 92 llvr~~~ 98 (99)
.++|.++
T Consensus 77 ~~~r~~~ 83 (193)
T PF13632_consen 77 MLFRREA 83 (193)
T ss_pred eeeeHHH
Confidence 9998653
No 2
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.42 E-value=0.00028 Score=49.91 Aligned_cols=84 Identities=21% Similarity=0.208 Sum_probs=48.0
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecccchhhhhhhhhhcCcceeeec
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWK 88 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~DD~~r~~~q~~~~~~P~fG~h 88 (99)
+.+||+.||+|+.++++++...+....+....+-+|.+.+.+. .++++.+.+. +.......++...+.++ ....+
T Consensus 86 ~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 160 (228)
T PF13641_consen 86 RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND--RNWLTRLQDL-FFARWHLRFRSGRRALG--VAFLS 160 (228)
T ss_dssp --SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC--CCEEEE-TT---S-EETTTS-TT-B------S-B-
T ss_pred CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC--CCHHHHHHHH-HHhhhhhhhhhhhcccc--eeecc
Confidence 3789999999999999999999999954444555576666653 5777777664 44445445544444443 34468
Q ss_pred ccEEEEeec
Q psy11721 89 GSYVVTQFL 97 (99)
Q Consensus 89 Gs~llvr~~ 97 (99)
|+.+++|.+
T Consensus 161 G~~~~~rr~ 169 (228)
T PF13641_consen 161 GSGMLFRRS 169 (228)
T ss_dssp -TEEEEEHH
T ss_pred CcEEEEEHH
Confidence 999999865
No 3
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.60 E-value=0.028 Score=38.08 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=49.5
Q ss_pred ceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCc-hhhhheeccceeecccchhhhhhhhhhcCcceeeecc
Q psy11721 11 DWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEE-VVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKG 89 (99)
Q Consensus 11 dWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~-~~n~lt~~aDs~Rv~DD~~r~~~q~~~~~~P~fG~hG 89 (99)
+|++.||.|+.+.++.+..+++.+......+..|.-.+.++. ..+++..... -...+ ......++++....|
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~ 153 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGS------RLFNF-LIRLLLGVRISDTQS 153 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHHHHH------HHHHH-HHHHHcCCCCcCCCC
Confidence 899999999999999999999987665555555554444431 0122222111 11111 112225777888888
Q ss_pred cEEEEeec
Q psy11721 90 SYVVTQFL 97 (99)
Q Consensus 90 s~llvr~~ 97 (99)
++.++|.+
T Consensus 154 ~~~~~~r~ 161 (185)
T cd04179 154 GFRLFRRE 161 (185)
T ss_pred ceeeeHHH
Confidence 88877643
No 4
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.35 E-value=0.037 Score=38.46 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=32.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYA 49 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~ 49 (99)
..+||+.+|.|+.+.++.+..++..+......+..|-..+.
T Consensus 82 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 122 (229)
T cd04192 82 KGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF 122 (229)
T ss_pred cCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec
Confidence 57999999999999999999999977765555555555544
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.09 E-value=0.17 Score=32.45 Aligned_cols=39 Identities=8% Similarity=0.278 Sum_probs=29.6
Q ss_pred ceEEEecCccccChhhHHHHHHHHHhCCee-cceeEEEcC
Q psy11721 11 DWVVHLDEETLLTENSIRGVLNFVLDGKHH-FGQGLITYA 49 (99)
Q Consensus 11 dWi~HlDEET~v~~~si~gi~~Fi~~g~~~-~GqGiI~Y~ 49 (99)
+||+.||+|+.+.++++..+++++.+.... ...+...+.
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 119 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYID 119 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEec
Confidence 399999999999999999999999986653 333333333
No 6
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=94.06 E-value=0.097 Score=37.04 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccc
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLAD 62 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aD 62 (99)
+.+||+.+|-|+.++++.++.+..++.+.+-...||-..+-+.. .||++.+.+
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~ 141 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRH-KNLLTILQD 141 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCC-CCHHHHHHH
Confidence 45899999999999999999998887655445666666554432 466655544
No 7
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.09 E-value=0.12 Score=37.10 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=35.1
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
.+||+.||.|+.+.++.+..+++.+.+....+-+|-+.+.+.
T Consensus 110 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~ 151 (251)
T cd06439 110 GEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDG 151 (251)
T ss_pred CCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCC
Confidence 499999999999999999999999976555666777776554
No 8
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.83 E-value=0.22 Score=34.90 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=33.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI~Y~~ 50 (99)
+.+||+.+|.|+.++++.+..+++.+..+.+ .+-+|...+.+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~ 126 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYN 126 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEec
Confidence 5799999999999999999999999987444 45555544433
No 9
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=91.94 E-value=0.16 Score=35.50 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.9
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
.+||+.||.|..++++.+..+++++......+-.|...++.
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~ 119 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEG 119 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecC
Confidence 48999999999999999999999977555555455444443
No 10
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=91.11 E-value=1.2 Score=32.85 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=51.9
Q ss_pred CCCceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEEEcCCCchhhhheeccceeec-ccchhhhhhhhhhcCccee
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLITYANEEVVNWVTTLADSFRV-ADDMGKLRLQFSLFHKPLL 85 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI~Y~~~~~~n~lt~~aDs~Rv-~DD~~r~~~q~~~~~~P~f 85 (99)
.+.++|+.+|-||.+++++|+.++..+...+. ..-+|.+...+.. .|+++.+.+.=-. ..=+. +...+.++. +.
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~-~~~~~~~q~~ey~~~~~~~--~~~~s~~g~-~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKK-QGPLVMYQVFEYAISHWLD--KAFESVFGF-VT 147 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCc-chhHHHhHheehhhhhhhc--ccHHHcCCc-eE
Confidence 37899999999999999999999988764444 3335655444431 3555544431000 00000 111233343 45
Q ss_pred eecccEEEEeecc
Q psy11721 86 SWKGSYVVTQFLS 98 (99)
Q Consensus 86 G~hGs~llvr~~~ 98 (99)
...|.+.+.|.++
T Consensus 148 ~~~G~~~~~R~~~ 160 (244)
T cd04190 148 CLPGCFSMYRIEA 160 (244)
T ss_pred ECCCceEEEEehh
Confidence 6789998888764
No 11
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=88.65 E-value=1.1 Score=31.02 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheec
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTL 60 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~ 60 (99)
.+.+|++.+|-|+.+.++.++.++..+..+. ..-||-..+.+.. .||++.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~-~~v~g~~~~~~~~-~~~~~~~ 130 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGA-RVVQAYYNSKNPD-DSWITRL 130 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCC-CeeEEEEeeeCCc-cCHHHHH
Confidence 3589999999999999999999999887654 4567655544321 2555444
No 12
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=88.34 E-value=0.94 Score=32.86 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=33.6
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCe--ecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKH--HFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~--~~GqGiI~Y~~ 50 (99)
..+||+.+|.|+.+.++.+..+++++.++.. .+.+|-+.+.+
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYN 127 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeC
Confidence 4589999999999999999999998875533 46677766554
No 13
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=88.21 E-value=0.82 Score=36.56 Aligned_cols=41 Identities=5% Similarity=0.063 Sum_probs=31.9
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
.+|++.+|.|+.+.++.++.++..+++....+..|...+..
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~ 174 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC 174 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC
Confidence 68999999999999999999999988655444444444433
No 14
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.81 E-value=1.5 Score=27.82 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHH-hCCeecceeEEEc
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVL-DGKHHFGQGLITY 48 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~-~g~~~~GqGiI~Y 48 (99)
+.+||++||.|+.+.++.+..++.... +.....-.|....
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~ 118 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRV 118 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEE
Confidence 678999999999999999999954444 3333333333333
No 15
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=87.47 E-value=1 Score=33.96 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
..+||+.||.|+.++++.|..+++.+......+.-|.|.+.+
T Consensus 83 ~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~ 124 (299)
T cd02510 83 TGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVID 124 (299)
T ss_pred cCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecccc
Confidence 468999999999999999999999998665544445555543
No 16
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=87.47 E-value=1.6 Score=32.53 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=26.6
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+||+.||+|+.++++.+..++++++..
T Consensus 73 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 73 GVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 67999999999999999999999998754
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.99 E-value=1.4 Score=30.85 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT 47 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~ 47 (99)
+.+|++.||.|+.++++.+..+++++.+.....-.|...
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 119 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPME 119 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEeccee
Confidence 578999999999999999999999887655544444443
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=86.05 E-value=1.3 Score=31.38 Aligned_cols=27 Identities=7% Similarity=0.220 Sum_probs=25.0
Q ss_pred CceEEEecCccccChhhHHHHHHHHHh
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLD 36 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~ 36 (99)
.+||+.+|.|+.+++++|..++++..+
T Consensus 85 ~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (236)
T cd06435 85 AEIIAVIDADYQVEPDWLKRLVPIFDD 111 (236)
T ss_pred CCEEEEEcCCCCcCHHHHHHHHHHhcC
Confidence 699999999999999999999998764
No 19
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=85.76 E-value=2.1 Score=32.99 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=31.9
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEEEcCC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLITYAN 50 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI~Y~~ 50 (99)
++|++-|+.||.+++++|...++-++.-.. -+.+..|....
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 339999999999999999999999985544 45555555444
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.11 E-value=2.3 Score=29.40 Aligned_cols=40 Identities=15% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEc
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITY 48 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y 48 (99)
..+|++.||+|+.+.++.+..+++.+.+....+..|-+.+
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD 118 (202)
T ss_pred CCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc
Confidence 5789999999999999999999998874444443444443
No 21
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=84.62 E-value=0.81 Score=28.77 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=27.0
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++.|+ +||.||. |+.+.|.+...|+.+|..
T Consensus 10 ~dg~~~~-FMd~etyeQ~~i~~~~igd~~~~L~e~~~ 45 (61)
T cd04470 10 KDGDNYV-FMDTETYEQIELPKEALGDAAKFLKEGME 45 (61)
T ss_pred eCCCEEE-EeCCCCceEEEECHHHhhhHHhhCcCCCE
Confidence 3456665 9999997 999999999999998876
No 22
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=84.46 E-value=3.3 Score=29.21 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=24.8
Q ss_pred CCceEEEecCccccChhhHHHHH---HHHHhCCe
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVL---NFVLDGKH 39 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~---~Fi~~g~~ 39 (99)
+.+||+.||.|+.++++.+..++ ........
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 108 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSN 108 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCC
Confidence 46999999999999999999995 54443433
No 23
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=84.00 E-value=1.7 Score=30.63 Aligned_cols=42 Identities=24% Similarity=0.109 Sum_probs=33.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
+.++|+.||.|+.+.++.+..+++.+.+..-...+|-+.+.+
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~ 118 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILR 118 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeec
Confidence 679999999999999999999999987444455555555544
No 24
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=83.36 E-value=1.9 Score=31.46 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.6
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGL 45 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGi 45 (99)
+.+||+.||.|..++++.+..+++.+.+....+-.|-
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 4689999999999999999999998876554444443
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=82.57 E-value=2.3 Score=30.37 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEc
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITY 48 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y 48 (99)
+.+||+.+|-|+.+++++|..++.+..+....+-+|-+.+
T Consensus 87 ~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~ 126 (232)
T cd06437 87 KGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH 126 (232)
T ss_pred CCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee
Confidence 5789999999999999999998877655444444443333
No 26
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.61 E-value=3.3 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=26.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGK 38 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~ 38 (99)
..+||+.||.++.+.++.+..+++++..+.
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~ 108 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADHIELAEPGV 108 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHHHHHhCCCc
Confidence 468999999999999999999999884433
No 27
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=80.45 E-value=0.96 Score=34.99 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=20.4
Q ss_pred CCCceEEEecCccccChhhHHHHHH
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLN 32 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~ 32 (99)
.+.+|.++.||||+|..+.++..|.
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~ 109 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLS 109 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHT
T ss_pred CCceEEEEEeCCceecHHHHHHHHh
Confidence 4569999999999999888888876
No 28
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=77.62 E-value=6.5 Score=27.79 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI~Y~~ 50 (99)
..+||+.||.|+.+.++.+...+..+.++.. ..|.++...+.
T Consensus 84 ~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 126 (219)
T cd06913 84 SGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPE 126 (219)
T ss_pred CCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCc
Confidence 4689999999999999999988877765443 34555544433
No 29
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=73.56 E-value=5.4 Score=28.99 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=26.7
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCe
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~ 39 (99)
.+||+.||.|..++++.+..+.+++..+..
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 459999999999999999999999987653
No 30
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.79 E-value=8.1 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCC-eecceeE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGK-HHFGQGL 45 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~-~~~GqGi 45 (99)
..+||+.+|.|..+.++.+..++.++.... ..+-.|.
T Consensus 80 ~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 117 (201)
T cd04195 80 TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117 (201)
T ss_pred CCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEccc
Confidence 468999999999999999999999987543 3443443
No 31
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=72.47 E-value=9.8 Score=26.70 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=31.3
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYA 49 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~ 49 (99)
.+||+.||.|+.++++.+..+++.+.+....+-.|.-...
T Consensus 83 gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~ 122 (211)
T cd04188 83 GDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHL 122 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecc
Confidence 4899999999999999999999997655555545544433
No 32
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=72.10 E-value=6.9 Score=28.39 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCCceEEEecCccccChhhHHHHHHHHHhCCee
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLNFVLDGKHH 40 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~ 40 (99)
-++++++.+|.|+.++++.++.++.-..+.+..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vg 62 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVG 62 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCc
Confidence 578999999999999999999999988775443
No 33
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=71.94 E-value=7 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCceEEEecCccccChhhHHHH-HHHHHhCCee
Q psy11721 9 IQDWVVHLDEETLLTENSIRGV-LNFVLDGKHH 40 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi-~~Fi~~g~~~ 40 (99)
+.+|++.+|.|..++++.+..+ ..+....+..
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~ 109 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEAD 109 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCce
Confidence 5799999999999999999998 4444444443
No 34
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.64 E-value=6.3 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.5
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+|++.+|++..+.++.+..+++.+...
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 57999999999999999999999965544
No 35
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=69.30 E-value=7.9 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGL 45 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGi 45 (99)
..+|++.+|.|+.++++.+..+++.+.+....+-.|.
T Consensus 86 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 122 (196)
T cd02520 86 RYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL 122 (196)
T ss_pred CCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee
Confidence 4689999999999999999999998754433333333
No 36
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.72 E-value=9.4 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHh
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLD 36 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~ 36 (99)
+.+||+.||.|..+.++.+..+++.+..
T Consensus 79 ~g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 79 DGDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred CCCEEEEECCCcccChhHHHHHHHHHhc
Confidence 5799999999999999999999998553
No 37
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.57 E-value=13 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHH
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVL 35 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~ 35 (99)
+.+||+.||.|..+.++.+..++..+.
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~ 101 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFA 101 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHH
Confidence 468999999999999999999996555
No 38
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.69 E-value=11 Score=25.72 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHH
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVL 35 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~ 35 (99)
+.+|++.||.++.++++.+..++..+.
T Consensus 83 ~~d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 83 TGEFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred cCCEEEEECCCCcCChHHHHHHHHHHH
Confidence 468999999999999999999999874
No 39
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.96 E-value=17 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=29.1
Q ss_pred CceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 10 QDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 10 ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
.+||+.+|.|+.++++.+..++..........|.+...+.+
T Consensus 73 ~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 113 (221)
T cd02522 73 GDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDD 113 (221)
T ss_pred CCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecC
Confidence 68999999999999999999755444444444544444443
No 40
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=64.44 E-value=16 Score=29.87 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCC-eecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGK-HHFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~-~~~GqGiI~Y~~ 50 (99)
+.+||+.+|.|+.++++.++.+++..+.+. -....|.+..++
T Consensus 131 ~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~ 173 (439)
T TIGR03111 131 IGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDK 173 (439)
T ss_pred cCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCc
Confidence 468999999999999999999999887444 356677775543
No 41
>PRK11204 N-glycosyltransferase; Provisional
Probab=62.81 E-value=14 Score=29.31 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEEEcC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLITYA 49 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI~Y~ 49 (99)
+.++++-+|.|+.++++++..+++..+...+ ..-||.....
T Consensus 134 ~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~ 175 (420)
T PRK11204 134 RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIR 175 (420)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceec
Confidence 5689999999999999999999998864443 3445543333
No 42
>PRK10073 putative glycosyl transferase; Provisional
Probab=61.88 E-value=13 Score=29.46 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeec--ceeEEEcC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHF--GQGLITYA 49 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~--GqGiI~Y~ 49 (99)
.-+||.+||.|..+.++.+..+++.++++..++ +.+...|.
T Consensus 85 ~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~ 127 (328)
T PRK10073 85 TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFR 127 (328)
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEe
Confidence 458999999999999999999999988665443 34444443
No 43
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=56.76 E-value=23 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=25.2
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+||+.+|.|..++++.+..+++.+..+
T Consensus 80 ~~d~i~~~D~D~~~~~~~l~~l~~~~~~~ 108 (181)
T cd04187 80 RGDAVITMDADLQDPPELIPEMLAKWEEG 108 (181)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999999985443
No 44
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=56.11 E-value=24 Score=28.83 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.5
Q ss_pred CCCceEEEecCccccChhhHHHHHHHHHhCCe-ecceeEE
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLI 46 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~-~~GqGiI 46 (99)
.+.++++-+|-|+.+++++++.++....++.+ ..=||..
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~ 193 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNP 193 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccc
Confidence 35799999999999999999999986664443 3334433
No 45
>PRK00529 elongation factor P; Validated
Probab=55.21 E-value=11 Score=28.28 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.9
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++. +++||+||+ |..+.+...++|+.+|..
T Consensus 75 ~dgd~-~~fMD~etyeq~~l~~~~lg~~~~~L~eg~~ 110 (186)
T PRK00529 75 NDGDG-YVFMDTETYEQIEVPADQVGDAAKFLKEGME 110 (186)
T ss_pred ECCCE-EEEecCCCceeeEcCHHHhHHHHhhccCCCE
Confidence 34455 677999987 899999999999998875
No 46
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=54.68 E-value=20 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeeccee
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQG 44 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqG 44 (99)
+.+||+.+|.|+.+.++.++.++...++.+..+-+|
T Consensus 126 ~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~ 161 (373)
T TIGR03472 126 RHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTC 161 (373)
T ss_pred cCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEec
Confidence 579999999999999999999998876544444444
No 47
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
Probab=54.17 E-value=2.5 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 8 KIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 8 ~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.++. +++||.||. |.++.+...+.|+.+|..
T Consensus 10 dgd~-~~FMd~etyeQi~v~~~~~g~~~~~L~eg~~ 44 (55)
T PF01132_consen 10 DGDN-YVFMDTETYEQIEVPKDQLGDALKFLKEGME 44 (55)
T ss_dssp ESSE-EEEEETTT--EEEEEHHHHTTTGCC--TTEE
T ss_pred CCCE-EEEecCCCceEEEecHHHhChHHhhCcCCCE
Confidence 3444 789999987 999999999999988754
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=51.61 E-value=22 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCCceEEEecCccccChhhHHHHHHHHHhC-CeecceeEEEcCCCchhhhheecc
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLNFVLDG-KHHFGQGLITYANEEVVNWVTTLA 61 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~Fi~~g-~~~~GqGiI~Y~~~~~~n~lt~~a 61 (99)
.+.++|+-||-|+.+.+++|+.++.++... +-.+=|+...+.+. .|+++.+.
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~--~~~~~~~~ 146 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGA--ETLFARLQ 146 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECC--CCHHHHHH
Confidence 356899999999999999999999988743 33455555444333 35555543
No 49
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=51.56 E-value=25 Score=25.17 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=36.2
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
--++-|||=|. +|+.+.+.+.+.|.+-+.. |..||.-.+. .+.+..+||.+
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~--~~~~~~~~d~i 206 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHA--KELVDTTRHRV 206 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC--HHHHHHhCCEE
Confidence 34788999988 9999999999999865443 6566666664 34444455544
No 50
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.60 E-value=29 Score=26.91 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=44.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecccc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADD 69 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~DD 69 (99)
|+=|||=|. +|+...+.+++++.+=....|.-||.-.+. .+++..+||-+=+.+|
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd--~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD--LELVLEYADRVVVLDD 214 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc--HHHHHhhCCEEEEEEC
Confidence 456899998 999999999999998777777788888887 6778888887655554
No 51
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=49.64 E-value=26 Score=25.12 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=36.1
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
-++-|||=|. +|+.+...+.+.|.+-... |..||.-.+. .+.+..+||-+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~--~~~~~~~~d~i 204 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHD--LDLLLELADRV 204 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC--HHHHHHhCCEE
Confidence 4778999988 9999999999999865444 6777777665 33344445543
No 52
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=49.55 E-value=65 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCceEEEecCccccChhhHHHHHHH
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNF 33 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~F 33 (99)
..+||+.+|-|.+++++++..++++
T Consensus 88 ~~d~l~flD~D~i~~~~~i~~~~~~ 112 (281)
T PF10111_consen 88 RGDYLIFLDADCIPSPDFIEKLLNH 112 (281)
T ss_pred CCCEEEEEcCCeeeCHHHHHHHHHH
Confidence 5789999999999999999999995
No 53
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.20 E-value=32 Score=24.22 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=37.0
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|..+.+.+++.+..-... |..+|.-.+. .+.+...+|.+
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~--~~~~~~~~d~i 165 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHI--LEEAERLCDRV 165 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCC--HHHHHHhCCEE
Confidence 4778999988 9999999999999865545 7777777775 33444455544
No 54
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=48.45 E-value=8.8 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=27.1
Q ss_pred eccceeecccchhhhhhhhhhcCcceeeec-ccEEEEeec
Q psy11721 59 TLADSFRVADDMGKLRLQFSLFHKPLLSWK-GSYVVTQFL 97 (99)
Q Consensus 59 ~~aDs~Rv~DD~~r~~~q~~~~~~P~fG~h-Gs~llvr~~ 97 (99)
++.+..+.++|+-.|+|+..- ..+.+.++ |+|+.++..
T Consensus 3 ~v~~~~~~s~~~~~~~~~~~~-~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELSPDVKIFRFKLPD-PDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEESSSEEEEEEEESS-TTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeCCCeEEEEEEECC-CCcccccCcceEEEEEEc
Confidence 456777889999888888764 34457776 999998864
No 55
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=48.13 E-value=18 Score=30.62 Aligned_cols=53 Identities=28% Similarity=0.509 Sum_probs=38.9
Q ss_pred CCcccCcCCCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 1 MDHIRLNKIQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 1 ~~~~~~~~~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
|...-+.++|||-+||=|.- -+++++- +-.++||--||-+|= +.-+|+++|++
T Consensus 2 ~~~l~i~rPdDwHlHLRdg~-----mL~~V~p---~ts~~f~rAiIMPNL---~pPvtt~~~a~ 54 (344)
T COG0418 2 MQELTIRRPDDWHLHLRDGA-----MLKAVVP---YTSRGFGRAIIMPNL---VPPVTTVADAL 54 (344)
T ss_pred ceeeeccCccceeEEecCcc-----HHHHhhh---hhhhhcceEEEcCCC---CCCcccHHHHH
Confidence 45667899999999998754 4556665 666789999988753 45577777765
No 56
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.04 E-value=28 Score=25.01 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=36.0
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
--++-|||=|. +|..+...+.+.|.+-....|..||.-.+. .+.+..+||.+
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~~d~v 201 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD--QEEALALADRI 201 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC--HHHHHHhcCEE
Confidence 34788999998 999999999999986443346667766665 23334445533
No 57
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.30 E-value=28 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=36.2
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|+.+...+.+.+.+-....|..||.-.+. .+.+..+||-+
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~--~~~~~~~~d~v 207 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD--LDTAFAIADRI 207 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC--HHHHHHhcCEE
Confidence 3677999998 999999999999986544456667766664 33344455544
No 58
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=45.32 E-value=20 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 8 KIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 8 ~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.++. +++||.||+ +..+.+...+.|+.+|..
T Consensus 75 dgd~-~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~ 109 (184)
T TIGR00038 75 DGDS-YVFMDTETYEQIELPKDLLGDAAKFLKENME 109 (184)
T ss_pred CCCE-EEEeCCCCccceEcCHHHHHHHHhhcCCCCE
Confidence 4455 569999988 899999999999999876
No 59
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=44.35 E-value=24 Score=29.71 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
|++|||=|+ +|=..=..|.+|+.+-....+- .|.|+.+. -+=++++||.+
T Consensus 177 VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a-TVllTTH~-~~di~~lc~rv 227 (325)
T COG4586 177 VLFLDEPTVGLDVNAQANIREFLKEYNEERQA-TVLLTTHI-FDDIATLCDRV 227 (325)
T ss_pred EEEecCCccCcchhHHHHHHHHHHHHHHhhCc-eEEEEecc-hhhHHHhhhhe
Confidence 799999999 9999999999999844433333 34444432 23356666654
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.09 E-value=34 Score=24.81 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=35.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|+.+...+.+.|.+-....|..||.-.+. .+.+..++|.+
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~--~~~~~~~~d~i 202 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD--IDEAVFLADRV 202 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC--HHHHHHhCCEE
Confidence 3677999988 999999999999985433445566666654 33344455544
No 61
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.70 E-value=34 Score=24.67 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=36.1
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
--++-|||=|. +|..+.+.+.+.|.+-....|..||.-.+. .+.+..++|.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~--~~~~~~~~d~ 201 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD--LSEAEYLADR 201 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC--HHHHHHhcCE
Confidence 45788999998 999999999999986544456667776665 3333344443
No 62
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=42.35 E-value=33 Score=26.96 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=35.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-.||.|. +|++|-..+++.+.+-.+..|+-||.-.+.
T Consensus 163 iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 163 IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 678899999 999999999999999989999999988875
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=41.98 E-value=40 Score=24.18 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=36.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+.+.|.+-....|..||.-.+. .+.+..++|-+
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~--~~~~~~~~d~i 201 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD--QVEAMTMADRI 201 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhcCeE
Confidence 677899988 999999999999986544456677776665 34444555544
No 64
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.09 E-value=41 Score=23.73 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=30.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|.++...+.+.+.+-....|..+|.-.+.
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456899888 999999999999986555557777777665
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=39.33 E-value=54 Score=23.59 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=35.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|..+.+.+.+.+..-+.. |..||.-.+. .+.+..+||-+
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~--~~~~~~~~d~i 208 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHD--INLVETYRHRT 208 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC--HHHHHHhCCEE
Confidence 4778999988 9999999999999854333 6667776665 33444455543
No 66
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.86 E-value=46 Score=24.09 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=36.0
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|+.+...+.+.+.+-....|..||.-.+. .+.+..++|.+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~--~~~~~~~~d~i 202 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY--MEEAEQLCDRV 202 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHHhCCEE
Confidence 3778999988 999999999999986555556667766654 33344444543
No 67
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.60 E-value=43 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=29.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.|.+-.+..|..||.-.+.
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899988 999999999999985433346666666554
No 68
>PLN03153 hypothetical protein; Provisional
Probab=38.27 E-value=33 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=20.8
Q ss_pred cCCCceEEEecCccccChhhHHHHHH
Q psy11721 7 NKIQDWVVHLDEETLLTENSIRGVLN 32 (99)
Q Consensus 7 ~~~ddWi~HlDEET~v~~~si~gi~~ 32 (99)
..+-+|++++||||++-.+.+...|.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls 233 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLS 233 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHh
Confidence 46779999999999986666666664
No 69
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=38.22 E-value=49 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=34.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+.+.+.+-+. -|..||.-.+. .+.+..++|.+
T Consensus 164 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~--~~~~~~~~d~i 213 (236)
T cd03219 164 LLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHD--MDVVMSLADRV 213 (236)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC--HHHHHHhCCEE
Confidence 677899988 999999999999985443 36667766664 23333445543
No 70
>KOG1614|consensus
Probab=37.99 E-value=73 Score=26.50 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=51.6
Q ss_pred cCCCceEEEec------CccccChhhHHHHHHHHHhCCe---ecceeEEEcCCCchhhhheeccceeecccchhhhhhhh
Q psy11721 7 NKIQDWVVHLD------EETLLTENSIRGVLNFVLDGKH---HFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQF 77 (99)
Q Consensus 7 ~~~ddWi~HlD------EET~v~~~si~gi~~Fi~~g~~---~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~DD~~r~~~q~ 77 (99)
+.+..|-+|.| |=+++|.-+|..|+--.--+.- .-|+-+|.||.++ |--..+
T Consensus 125 aG~kvW~IRiDlhiLd~DGnlvDaA~iAviaaL~hFrrPdvTv~g~ev~ihp~eE-------------------r~PvPL 185 (291)
T KOG1614|consen 125 AGEKVWLIRIDLHILDHDGNLVDAACIAVIAALMHFRRPDVTVGGEEVIIHPVEE-------------------REPVPL 185 (291)
T ss_pred hCCeEEEEEEEEEEEcCCCCeehhHHHHHHHHHHhcCCCCcccccceeEecChhc-------------------cCCcce
Confidence 45678988765 4466999999988775543322 5789999999974 334567
Q ss_pred hhcCcce---eee--cccEEEEeec
Q psy11721 78 SLFHKPL---LSW--KGSYVVTQFL 97 (99)
Q Consensus 78 ~~~~~P~---fG~--hGs~llvr~~ 97 (99)
+..|+|+ ||. +|..+++-+.
T Consensus 186 ~I~HmPIC~tf~ffnkG~ivviDpt 210 (291)
T KOG1614|consen 186 SIHHMPICFTFGFFNKGEIVVIDPT 210 (291)
T ss_pred eeeeccceEEEEEecCceEEEeCCc
Confidence 7788886 565 7888887654
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=37.60 E-value=58 Score=23.31 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+...+.+.|.+-.. -|..||.-.+. .+.+..++|-+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~--~~~~~~~~d~i 207 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHD--LSLVDRVAHRV 207 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC--HHHHHHhcCEE
Confidence 566899888 999999999999986433 26677776665 23344445543
No 72
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.52 E-value=82 Score=24.54 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCee
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHH 40 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~ 40 (99)
+.++|+.+|-||.+.++.++.+.....+....
T Consensus 137 ~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 137 KGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred CCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 38999999999999999999999987766554
No 73
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=37.39 E-value=48 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
--++-|||=|. +|+.+.+.+.+.|..-....|..||.=.+.
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 45788999988 999999999999985444456666665554
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=37.16 E-value=53 Score=23.50 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=32.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
++-|||=|. +|+.+.+.+.+.+.+-... |..||.-.+. .+.+..++|-
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~--~~~~~~~~d~ 195 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHD--YEFLAKVCDR 195 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC--HHHHHHhCCE
Confidence 678999888 9999999999999854333 5556655554 2333344443
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.14 E-value=47 Score=24.50 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=30.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|.++...+++.+.+-...-|..||.-.+.
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 677899888 999999999999986544446677766664
No 76
>PRK12426 elongation factor P; Provisional
Probab=36.96 E-value=32 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=26.0
Q ss_pred CceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 10 QDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 10 ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.+=+++||.||+ |+.+.+.+.++|+.+|..
T Consensus 77 g~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~ 110 (185)
T PRK12426 77 GDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVT 110 (185)
T ss_pred CCeEEEecCCCceEEEeCHHHhhhHHhhccCCCE
Confidence 345689999998 999999999999998875
No 77
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=36.07 E-value=55 Score=23.63 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.|..-....|..||.-.+.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899888 999999999999886544456677776665
No 78
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=36.00 E-value=58 Score=25.23 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHh
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLD 36 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~ 36 (99)
++-|||=|. +|+.+.+.+.+.|.+
T Consensus 145 lllLDEPt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 577999998 999999999998874
No 79
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=35.98 E-value=66 Score=25.40 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=28.9
Q ss_pred CCceEEEecCccc-cChhhHHHHHHHHH-hCCeeccee
Q psy11721 9 IQDWVVHLDEETL-LTENSIRGVLNFVL-DGKHHFGQG 44 (99)
Q Consensus 9 ~ddWi~HlDEET~-v~~~si~gi~~Fi~-~g~~~~GqG 44 (99)
+.+||+.||.|+. .+++.|..++..+. +....+-.|
T Consensus 115 ~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 115 TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 4699999999996 99999999999886 444444444
No 80
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=35.89 E-value=67 Score=19.52 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCceEEEecCccccCh-hhHHHHHHHHHhCCee
Q psy11721 9 IQDWVVHLDEETLLTE-NSIRGVLNFVLDGKHH 40 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~-~si~gi~~Fi~~g~~~ 40 (99)
++.=++.++.+..+++ +.++.+++|++.|.+-
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~l 66 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTL 66 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEE
Confidence 4445677777777885 9999999999999773
No 81
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=35.86 E-value=54 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.6
Q ss_pred eEEEecCc-cccChhhHHHHHHHHH
Q psy11721 12 WVVHLDEE-TLLTENSIRGVLNFVL 35 (99)
Q Consensus 12 Wi~HlDEE-T~v~~~si~gi~~Fi~ 35 (99)
=.+.|||= +.+|++.+..+++++.
T Consensus 65 ~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 65 RLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp SEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 36889999 4599999999999886
No 82
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=35.61 E-value=73 Score=24.75 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=30.8
Q ss_pred ceEEEecCccccChhhHHHHHHHHHhCCe--ecceeEEEcCC
Q psy11721 11 DWVVHLDEETLLTENSIRGVLNFVLDGKH--HFGQGLITYAN 50 (99)
Q Consensus 11 dWi~HlDEET~v~~~si~gi~~Fi~~g~~--~~GqGiI~Y~~ 50 (99)
-=|++|||=...+.+.+..+.+-+++|.- .=..+.++||.
T Consensus 107 ~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa 148 (206)
T PF01078_consen 107 RGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPA 148 (206)
T ss_dssp TSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB-
T ss_pred CCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEec
Confidence 34899999999999999999999998876 23446666665
No 83
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=35.47 E-value=37 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=20.8
Q ss_pred ceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 11 DWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 11 dWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
+=+++||.||. +..+.+ +...|+.+|..
T Consensus 11 ~~~~fMd~etyeq~~v~~~~~-~~~~~l~eg~~ 42 (55)
T cd04463 11 SKPVTMDLETYEVVQVPPPVD-QSFESFEPGEV 42 (55)
T ss_pred CEeEEecCCCceEEEeCHHHh-hHHhhCCCCCE
Confidence 45678999976 666654 57888888766
No 84
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=35.43 E-value=48 Score=27.55 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=38.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+++.|.+=.+..|-.||.-.+. .+.+..+||-+
T Consensus 448 lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd--~~~~~~~~d~i 498 (520)
T TIGR03269 448 IVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD--MDFVLDVCDRA 498 (520)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC--HHHHHHhCCEE
Confidence 677999998 999999999999986555667778887776 34455556544
No 85
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=35.17 E-value=55 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=30.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|.++...+.+.+..=+.+.|-.+|.-.+.
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4677899987 999999999999985444445577776664
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=35.16 E-value=53 Score=24.00 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|+.+.+.+.+.|.+-.+..|..||.-.+.
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 165 DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4788999988 999999999999986444445666665554
No 87
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=34.78 E-value=41 Score=25.79 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.7
Q ss_pred CceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 10 QDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 10 ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.+=+++||.||+ ++++.+-..++|+.+|..
T Consensus 77 g~~~~FMD~etyEQ~~i~~~~lgd~~~fL~e~~~ 110 (186)
T TIGR02178 77 GEEYVFMDEEDYTPYTFDKDAIEDELLFISEGLS 110 (186)
T ss_pred CCeEEEccCCCcEEEEeCHHHhhhhhhhhhCCCE
Confidence 345689999997 999999999999999863
No 88
>PRK14578 elongation factor P; Provisional
Probab=34.56 E-value=36 Score=26.05 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=25.9
Q ss_pred CceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 10 QDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 10 ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.+=+++||.||+ |..+.+-..++|+.+|..
T Consensus 79 g~~~~FMD~etyEQ~~i~~~~~g~~~~fL~e~~~ 112 (187)
T PRK14578 79 GDRGVFMDLETYEQFEMEEDAFSAIAPFLLDGTE 112 (187)
T ss_pred CCEEEEecCCCcEEEEecHHHhhhHHhhccCCCE
Confidence 455689999998 899999999999999875
No 89
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=34.46 E-value=30 Score=24.87 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.9
Q ss_pred CCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 9 IQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 9 ~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
+.+=+++||.||+ +..+.+...+.|+.+|..
T Consensus 78 dg~~~~FMD~etyeq~~v~~~~~~d~~~~l~eg~~ 112 (131)
T COG0231 78 DGDFYVFMDLETYEQYELPKDQIGDAAKFLKEGME 112 (131)
T ss_pred CCCeEEEccCCCceEEEecchhhhhHHHhcCCCCE
Confidence 4456789999998 899999999999999876
No 90
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.11 E-value=54 Score=24.27 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=35.6
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
--++-|||=|. +|..+.+.+.+.|..-....|-.||.-.+. .+.+..+||.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~--~~~~~~~~d~i 202 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN--MEQAKRIGDYT 202 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc--HHHHHHhCCEE
Confidence 35788999988 999999999999986444456666666554 23333444433
No 91
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=33.97 E-value=89 Score=27.73 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCC-eecceeEEEc
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGK-HHFGQGLITY 48 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~-~~~GqGiI~Y 48 (99)
+.+||+.+|-|+.+++++++..+.+..... -.+-|+--.|
T Consensus 228 ~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f 268 (713)
T TIGR03030 228 DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFF 268 (713)
T ss_pred CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeec
Confidence 458999999999999999999998876443 3454554333
No 92
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=33.93 E-value=66 Score=25.21 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHh
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLD 36 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~ 36 (99)
++-|||=|. +|+.+.+.+.+.|..
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 678999998 999999999999984
No 93
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=33.91 E-value=57 Score=24.58 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=30.9
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
--++-|||=|. +|..+.+.+.+.|.+-....|-.||.-.+.
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34778899888 999999999999986444456666666654
No 94
>KOG0065|consensus
Probab=33.44 E-value=43 Score=33.10 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=33.5
Q ss_pred ccCcCCCceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEE
Q psy11721 4 IRLNKIQDWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLI 46 (99)
Q Consensus 4 ~~~~~~ddWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI 46 (99)
|-|+.+-.=|++|||=|. ||.++-..|+.++++=.. -||-|+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIl 984 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTIL 984 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEE
Confidence 445666777999999999 999999999999985444 566654
No 95
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=33.15 E-value=61 Score=23.90 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=29.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.|.+-.+..|..||.-.+.
T Consensus 135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 135 VLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899887 999999999998875444446667766664
No 96
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=33.01 E-value=71 Score=22.94 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=30.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.+.+-.+..|..||.-.+.
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 677999988 999999999999986544346667766664
No 97
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=32.91 E-value=24 Score=27.83 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=17.2
Q ss_pred cccCcCCCceEEEec---CccccChhhHHH
Q psy11721 3 HIRLNKIQDWVVHLD---EETLLTENSIRG 29 (99)
Q Consensus 3 ~~~~~~~ddWi~HlD---EET~v~~~si~g 29 (99)
.|-.+.+|+|++||| +|++=+ +.|+.
T Consensus 137 rV~~~s~d~W~V~LDl~~~E~~~~-e~VK~ 165 (202)
T TIGR03746 137 RVIVHSDDSWTVNLDLSVDEYYGG-EPVKR 165 (202)
T ss_pred ceEEeCCCceEEEEEEEEEeeeCC-cchhh
Confidence 455678999999999 354443 33443
No 98
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=32.74 E-value=73 Score=22.76 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=32.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
++-|||=|. +|..+.+.+.+.+.+-.. -|..||.-.+. .+.+..++|.
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~--~~~~~~~~d~ 195 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHL--LSEIQKVADR 195 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC--HHHHHHhcCE
Confidence 677999998 999999999998885443 35566655554 3333344443
No 99
>PRK10018 putative glycosyl transferase; Provisional
Probab=32.72 E-value=63 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=25.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHh
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLD 36 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~ 36 (99)
..+||..||.|..+.++.+..+++++..
T Consensus 85 ~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 85 QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 4689999999999999999999998764
No 100
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.69 E-value=73 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=28.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|.++.+.+.+++..-... |..||.=.+.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 196 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHG 196 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 677899888 9999999999999854433 5556555443
No 101
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=32.63 E-value=58 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.9
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|..+.+.+.+.|..-....|-.||.-.+.
T Consensus 171 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 171 KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 4778999987 999999999999985544445566655553
No 102
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=32.59 E-value=67 Score=23.55 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+.+-+.. |..||.-.+.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 195 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHE 195 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 677899888 9999999999999854333 5666666664
No 103
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=32.22 E-value=68 Score=26.59 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=36.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|..+.+.+++.|..=.. .|..||.-.+. .+.+..+||-+
T Consensus 417 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd--~~~~~~~~d~i 466 (501)
T PRK11288 417 VILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSD--LPEVLGVADRI 466 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCC--HHHHHhhCCEE
Confidence 688999999 999999999998875433 37778887776 34444455544
No 104
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=32.12 E-value=65 Score=26.72 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=35.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+.+.+.+.|.+=++ .|..||.-.+. .+.+..+||-+
T Consensus 426 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd--~~~~~~~~d~v 475 (506)
T PRK13549 426 ILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSE--LPEVLGLSDRV 475 (506)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCC--HHHHHHhCCEE
Confidence 678999998 999999999999886443 37677777775 34444455543
No 105
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=31.58 E-value=71 Score=23.38 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=29.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
|+-|||=|. +|.++.+.+.+.+.+-... |..||.-.+.
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 196 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQN 196 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCc
Confidence 677899888 9999999999988853333 6677766654
No 106
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=31.39 E-value=68 Score=24.00 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.|..-+++.|..||.-.+.
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 677999988 999999999999986544446666666654
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.02 E-value=71 Score=23.27 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=31.2
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|+.+...+.+.|.+-+..-|-.||.-.+.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3677999987 999999999999986544456667766664
No 108
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=30.99 E-value=87 Score=22.47 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=35.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVA 67 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~ 67 (99)
++-|||=|. +|+.+.+.+.+.|.+-+. -|.-||.-.+. .+.+..++|.+=+.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~--~~~~~~~~d~i~~l 205 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHD--LGLVLEYFDRVLLL 205 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC--HHHHHHhcCEEEEE
Confidence 567899888 999999999999986433 25556655554 33444556654333
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=30.53 E-value=67 Score=24.17 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=28.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+++.|.+-.+..|..||.-.+.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 677999988 999999999998885432335566655553
No 110
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=30.44 E-value=45 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=13.5
Q ss_pred cccChhhHHHHHHHHH
Q psy11721 20 TLLTENSIRGVLNFVL 35 (99)
Q Consensus 20 T~v~~~si~gi~~Fi~ 35 (99)
++-+++.+|+|++|+.
T Consensus 19 ~l~d~nivrTiiEFLt 34 (62)
T PF06540_consen 19 PLADDNIVRTIIEFLT 34 (62)
T ss_pred CCchhHHHHHHHHHHH
Confidence 3467899999999997
No 111
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=30.35 E-value=39 Score=16.55 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=9.2
Q ss_pred ecceeEEEcCCCc
Q psy11721 40 HFGQGLITYANEE 52 (99)
Q Consensus 40 ~~GqGiI~Y~~~~ 52 (99)
.-|+|+.+|+++.
T Consensus 10 ~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 10 KHGYGVYTFPDGD 22 (23)
T ss_dssp EECEEEEE-TTS-
T ss_pred ccccEEEEeCCCC
Confidence 4589999999874
No 112
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.20 E-value=71 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=30.0
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+.+.+.+.+.|.+=....|..||.=.+.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3778999888 999999999999985443345566665554
No 113
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.15 E-value=76 Score=23.10 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|+.+.+.+.+.+.+-....|..||.-.+. .+.+..++|-+
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~--~~~~~~~~d~v 215 (241)
T cd03256 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ--VDLAREYADRI 215 (241)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHHhCCEE
Confidence 4788999988 999999999999986444446566666664 23333445544
No 114
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=30.01 E-value=65 Score=25.66 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=30.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-+||=|. ||..+-..|++.+.+=.+..|..||.-.+.
T Consensus 175 lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 175 VVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 678999998 999999999998875444556666665554
No 115
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=29.69 E-value=81 Score=26.14 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+.+.|.+-+.. |..||.-.+. ...+..+||-+
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd--~~~~~~~~d~v 465 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSE--MPEVLGMSDRI 465 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCC--HHHHHhhCCEE
Confidence 678999998 9999999999999864434 7777777775 33444445544
No 116
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=29.29 E-value=72 Score=25.47 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. ||+.+.+.+++.+.+=.+..|-.||.-.+
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 788999998 99999999999988433333444554444
No 117
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=29.06 E-value=93 Score=22.79 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=37.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecccch
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDM 70 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~DD~ 70 (99)
++-|||=|. +|+.+.+.+++.+.+-....|..||.=.+. .+.+..+||.+-+.++.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~--~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD--LAVLDYLSDRIHVFEGE 148 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC--HHHHHHhCCEEEEEcCC
Confidence 566799887 999999999999985433333445555444 34555667766555554
No 118
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=28.96 E-value=78 Score=26.03 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. +|+.+.+.+.+.+.+-++. |-.||.-.+
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH 193 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLN 193 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 678999998 9999999999999853332 444444443
No 119
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=28.92 E-value=28 Score=25.88 Aligned_cols=8 Identities=88% Similarity=1.145 Sum_probs=6.9
Q ss_pred EEEecCcc
Q psy11721 13 VVHLDEET 20 (99)
Q Consensus 13 i~HlDEET 20 (99)
++||||.|
T Consensus 124 ~vH~DE~t 131 (196)
T PF01076_consen 124 VVHLDETT 131 (196)
T ss_pred EEECCCCC
Confidence 79999985
No 120
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=28.66 E-value=81 Score=22.66 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+.+.|..=....|-.||.-.+.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 166 LLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 667899888 999999999999985444445566665554
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=28.58 E-value=76 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=29.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+++...+.+.|.+-.+..|-.||.-.+.
T Consensus 170 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 170 VIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 677999988 999999999999886444456566666654
No 122
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=28.57 E-value=78 Score=22.36 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. +|+.+.+.+.+.+.+=+.+ |..||.-.+
T Consensus 148 llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 148 VLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEee
Confidence 678999988 9999999999999854333 566665444
No 123
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=28.55 E-value=78 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=27.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. +|+.+.+.+.+.|..=...-|..||.-.+
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH 187 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 678999988 99999999999887432222444555444
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=28.49 E-value=79 Score=24.14 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=28.1
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|..+...+.+.|..-....|..||.-.+.
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3677899988 999999999998874333334455555443
No 125
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.46 E-value=98 Score=21.67 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.+..-... |.-+|.-.+.
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~ 141 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 567899887 9999999999999754333 4455555443
No 126
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=28.26 E-value=76 Score=24.45 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=29.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+..=....|..||.-.+.
T Consensus 175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 566899888 999999999999985444456676666554
No 127
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=28.24 E-value=99 Score=22.74 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=29.3
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|..+.+.+.+.+..-... |..||.-.+.
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~ 203 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHE 203 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 4788999988 9999999999988854332 5566665554
No 128
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.05 E-value=97 Score=22.17 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=33.3
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
-++-|||=|. +|+.+.+.+.+.+..-... |-.||.=.+. ...+..++|.+
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~--~~~~~~~~d~i 198 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQ--MELVEELCDRV 198 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCC--HHHHHHhhhEE
Confidence 4677999887 9999999999999854433 5556555554 23333445543
No 129
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.02 E-value=96 Score=21.92 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|+.+.+.+.+.+..-... |..+|.=.+. .+.+..++|.+
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~--~~~~~~~~d~v 174 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSE--LDELLGLCDRI 174 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC--HHHHHHhCCEE
Confidence 4778999888 9999999999999854332 5555555454 23344445543
No 130
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=27.83 E-value=35 Score=27.35 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=23.8
Q ss_pred CcCCCceEEEecCccc-cChhhHHHHHHHHHhCC
Q psy11721 6 LNKIQDWVVHLDEETL-LTENSIRGVLNFVLDGK 38 (99)
Q Consensus 6 ~~~~ddWi~HlDEET~-v~~~si~gi~~Fi~~g~ 38 (99)
++...+||+|||-|.. |.++ +-|-+||.++.
T Consensus 38 ~L~~~~~vlflDaDigVvNp~--~~iEefid~~~ 69 (222)
T PF03314_consen 38 ILPEYDWVLFLDADIGVVNPN--RRIEEFIDEGY 69 (222)
T ss_pred HhccCCEEEEEcCCceeecCc--ccHHHhcCCCC
Confidence 5677899999999998 5554 45788886554
No 131
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=27.82 E-value=77 Score=26.32 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=29.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|- ||+.+...+++.+.+=.+..|-.||.=.+.
T Consensus 189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 788999998 999999999998875433345555555553
No 132
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=27.78 E-value=80 Score=22.91 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
--++-|||=|. +|+++...+.+.|..=....|..||.-.+.
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34788999998 999999999999986544567777776665
No 133
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.66 E-value=83 Score=24.29 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=27.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.+.+=....|.-||.-.+.
T Consensus 166 llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 166 VLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 677999998 999999999988874333344455555443
No 134
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=27.44 E-value=22 Score=22.39 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=12.6
Q ss_pred cCCCceEEEecCccccC
Q psy11721 7 NKIQDWVVHLDEETLLT 23 (99)
Q Consensus 7 ~~~ddWi~HlDEET~v~ 23 (99)
..+.+|++|+|=|=.+-
T Consensus 69 ~~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLV 85 (97)
T ss_pred CCCCCEEEEEeeeEEEe
Confidence 35779999999766643
No 135
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.36 E-value=1.2e+02 Score=22.03 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=29.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.+..-.+ |..||.=.+.
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~ 195 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHR 195 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC
Confidence 456899887 999999999999986554 7777766654
No 136
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=27.33 E-value=1e+02 Score=22.85 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=33.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+.+.|.+=.+..|..||.-.+. ...+..++|.+
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~--~~~~~~~~d~i 224 (236)
T cd03267 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY--MKDIEALARRV 224 (236)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC--HHHHHHhCCEE
Confidence 677999988 999999999999985443345556655554 23344445543
No 137
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=27.25 E-value=84 Score=23.80 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=28.5
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
--++-|||=|. +|+.+.+.+.+.|.+-....|-.||.=.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 34788999988 99999999999888533333444554444
No 138
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=27.10 E-value=85 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=30.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+-+.|++.+.+=.+.+|.-||.-.+.
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 677899998 999999999999986544556666665554
No 139
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=26.89 E-value=82 Score=26.31 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=41.0
Q ss_pred CceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeeccc
Q psy11721 10 QDWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVAD 68 (99)
Q Consensus 10 ddWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~D 68 (99)
+--++-|||=|. +|+.+.+.+++.|.+-.+..|..||.=.+. .+.+..+||-+=+.+
T Consensus 443 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd--~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 443 KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD--LHVVRALCHQVIVLR 500 (529)
T ss_pred CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC--HHHHHHhcCeEEEEE
Confidence 446788999998 999999999999986555557677766665 444555566554443
No 140
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=26.88 E-value=96 Score=22.72 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.+.+-+.. |..+|.=.+.
T Consensus 134 llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvii~sH~ 172 (223)
T TIGR03771 134 VLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHD 172 (223)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 567899888 9999999999999854333 5566655553
No 141
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=26.76 E-value=95 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=29.7
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|..+.+.+.+.+..-+. -|..||.-.+.
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~ 208 (224)
T TIGR02324 169 PILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHD 208 (224)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 3778899888 999999999999985432 26566666654
No 142
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=26.54 E-value=99 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=29.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.+..-....|-.||.=.+.
T Consensus 169 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899887 999999999999986544556666665554
No 143
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=26.51 E-value=1.1e+02 Score=22.29 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=28.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.+..-.. +..||.-.+.
T Consensus 164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~ 201 (242)
T TIGR03411 164 LLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHD 201 (242)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECC
Confidence 677999988 999999999999985433 3455655554
No 144
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=26.46 E-value=93 Score=25.79 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=34.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+.+.|.+-... |..||.-.+. .+.+..+||-+
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd--~~~~~~~~d~i 479 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSE--LPEIITVCDRI 479 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCC--HHHHHhhCCEE
Confidence 677999998 9999999999999854333 6566666665 34444555543
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=26.29 E-value=93 Score=23.06 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=29.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.+..-....|..+|.-.+.
T Consensus 167 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 167 VMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 677899887 999999999999885444456666665554
No 146
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=26.20 E-value=93 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=28.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+.+-....|-.||.-.+.
T Consensus 146 vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 185 (230)
T TIGR02770 146 FLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 (230)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 677899887 999999999999885444445555555553
No 147
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=26.12 E-value=1.1e+02 Score=21.98 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=29.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.+.+-+.. |..||.-.+.
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~ 195 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHI 195 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 567899888 9999999999999854333 6677766664
No 148
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=25.69 E-value=96 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=35.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|- ||..+.+.+.+.|.+=.. .|..||.-.+. .+.+..+||-+
T Consensus 424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd--~~~i~~~~d~i 473 (510)
T PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSD--LEEIEQMADRV 473 (510)
T ss_pred EEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCC--HHHHHHhCCEE
Confidence 678999998 999999999999885433 36667777765 34444455544
No 149
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=25.49 E-value=96 Score=22.29 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=29.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.|..-....|..||.-.+.
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 677899987 999999999999885444446666666654
No 150
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=25.41 E-value=25 Score=15.74 Aligned_cols=7 Identities=29% Similarity=0.928 Sum_probs=5.8
Q ss_pred ceeeecc
Q psy11721 83 PLLSWKG 89 (99)
Q Consensus 83 P~fG~hG 89 (99)
|..|+||
T Consensus 2 psmgf~g 8 (10)
T PF08262_consen 2 PSMGFHG 8 (10)
T ss_pred Ccccccc
Confidence 7788887
No 151
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=25.36 E-value=1.2e+02 Score=21.96 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=29.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.+.+-.. -|..||.-.+.
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~ 183 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI 183 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 567899888 999999999999985433 26667766664
No 152
>PRK04542 elongation factor P; Provisional
Probab=25.26 E-value=77 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.4
Q ss_pred CceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 10 QDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 10 ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
.+=+++||.||+ |..+.+....+|+.+|..
T Consensus 79 g~~~~FMd~etyEQ~~i~~~~lgd~~~~L~e~~~ 112 (189)
T PRK04542 79 GDEYVFMDNEDYTPYTFKKDQIEDELLFIPEGMP 112 (189)
T ss_pred CCEEEEecCCCceEEEECHHHhhhHhhhhhcCCE
Confidence 355689999887 899999999999999864
No 153
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=25.23 E-value=1e+02 Score=22.69 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=30.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-++-|||=|. +|..+.+.+.+.|..-++..|-.||.=.+.
T Consensus 173 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 173 EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 4778999988 999999999999986544456566655554
No 154
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=25.21 E-value=1e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=28.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|.++.+.+.+.+.+-.+..|.-||.-.+.
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 566899888 999999999999986544445555555543
No 155
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.11 E-value=1.6e+02 Score=21.79 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=35.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVA 67 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~ 67 (99)
++-|||=|. +|..+...+.+.+..-.+ |-.||.-.+. .+.+...+|-+-+-
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~--~~~~~~~~d~i~~l 214 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHN--MQQGKRVADYTAFF 214 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHHhhCcEEEEE
Confidence 567899888 999999999999986543 5566666664 34444555544333
No 156
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=25.07 E-value=95 Score=24.68 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-+||=|. ||..+-+.|++.+.+=....|..+|.-.+.
T Consensus 174 llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 174 LLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 678999998 999999999998885444456666655554
No 157
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=25.05 E-value=1.1e+02 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHh
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLD 36 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~ 36 (99)
++-|||=|. ||+.+.+.+.+.|.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Confidence 677999998 999999999999984
No 158
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=24.93 E-value=91 Score=24.89 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=31.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-+||=|. ||..+-+.|++.+.+=....|..+|.-.+.
T Consensus 182 llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 182 LLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 466899888 999999999998886555667777776664
No 159
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=24.89 E-value=1e+02 Score=25.41 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=35.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
|+-|||=|. +|..+...+.+.|..=. ..|..||.-.+. .+.+..+||-+
T Consensus 412 illLDEPt~gLD~~~~~~~~~~l~~l~-~~~~tvi~vsHd--~~~~~~~~d~v 461 (491)
T PRK10982 412 ILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSE--MPELLGITDRI 461 (491)
T ss_pred EEEEcCCCcccChhHHHHHHHHHHHHH-HCCCEEEEECCC--hHHHHhhCCEE
Confidence 788999998 99999999999886432 247677777775 34444555544
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.72 E-value=1.1e+02 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=29.0
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
--++-|||=|. +|+.+.+.+.+.|.+-... |..||.-.+.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~ 204 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHL 204 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecc
Confidence 35788999988 9999999999998853322 5555555543
No 161
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.64 E-value=1.1e+02 Score=21.64 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=29.9
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
--++-|||=|. +|+.+.+.+.+.+..-... |..||.=.+.
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~ 193 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHD 193 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 35788999988 9999999999999854333 5666655543
No 162
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=24.62 E-value=1e+02 Score=23.36 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=28.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+.+-....|-.||.-.+.
T Consensus 141 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 141 LLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 677999988 999999999998874333345555555543
No 163
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=24.59 E-value=1.4e+02 Score=23.60 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
+.-||.+-+|+..|+-.+|+.+.+-+. ...+--|||++++.
T Consensus 64 ~~i~VfF~~~~~~vgvk~ir~~~~~~~--~~n~~r~IlV~q~~ 104 (205)
T PTZ00061 64 NRIIVYFADETKKTGVKPIRELTEKME--EHDIQRAILVTQNV 104 (205)
T ss_pred CcEEEEeCCCCCcCCHHHHHHHHHHHh--hcCCceEEEEECCC
Confidence 445998865566899999999988433 34666789999886
No 164
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.58 E-value=1.1e+02 Score=21.83 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=33.7
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
=++-|||=|. +|.++...+.+.+..=....|-.||.=.+. .+.+..++|.
T Consensus 148 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~~d~ 198 (211)
T cd03298 148 PVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ--PEDAKRLAQR 198 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC--HHHHHhhhCE
Confidence 4677899888 999999999999985433445566665553 2333344443
No 165
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=24.55 E-value=31 Score=19.14 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=5.5
Q ss_pred cCccccChh
Q psy11721 17 DEETLLTEN 25 (99)
Q Consensus 17 DEET~v~~~ 25 (99)
||||.|++.
T Consensus 13 deesivgeg 21 (26)
T PF09050_consen 13 DEESIVGEG 21 (26)
T ss_dssp --TTTTTTT
T ss_pred chhhcccCC
Confidence 889988864
No 166
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.30 E-value=1.1e+02 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+.+...+.+.+.+-... |..||.-.+.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~ 195 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHD 195 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3677899988 9999999999998853322 5556655543
No 167
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=23.74 E-value=1.1e+02 Score=25.34 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=27.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. ||+.+...+.+.+.+=+. -|-.||.-.+
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitH 199 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISH 199 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 788999998 999999999998874322 2444555444
No 168
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.61 E-value=1.1e+02 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=28.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+++.+.+=....|..||.-.+.
T Consensus 166 illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 567899888 999999999999885433445555555553
No 169
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.52 E-value=1.2e+02 Score=21.95 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=33.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|..+-+.+.+.+.+-....+--+|...+.. .+.+..++|.+
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~-~~~~~~~~d~i 190 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA-SDEIYDLFDKV 190 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC-HHHHHHhCCeE
Confidence 678999888 9999999999998854443344445554431 23344455544
No 170
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=23.44 E-value=1.1e+02 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=28.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+.+.+.+-+.. |..||.-.+.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd 199 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHR 199 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 678999998 9999999999999853322 5556655553
No 171
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=23.33 E-value=79 Score=25.69 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=46.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeeccc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVAD 68 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~D 68 (99)
++=+||=|. ||...=..|+|...+-++.++-+.|.-.+. .+.+..+||-+=|.|
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd--l~~v~~~cdRi~Vm~ 216 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD--LALVEHMCDRIAVMD 216 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc--HHHHHHHhhheeeee
Confidence 567899988 999999999999999999999999999988 678888888765544
No 172
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.06 E-value=1.3e+02 Score=23.17 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=28.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+.+.+.+.+..=+.. |-.||.-.+.
T Consensus 166 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~ 204 (287)
T PRK13641 166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHN 204 (287)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 577999998 9999999999998853322 5566655553
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=23.06 E-value=1.2e+02 Score=22.34 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=29.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|.++.+.+++.+.+-....|..||.-.+.
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~ 190 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899888 999999999999986443445556555553
No 174
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=23.05 E-value=1.2e+02 Score=21.71 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=28.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. +|..+.+.+.+.+.+-..+ |..+|.-.+
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH 183 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTH 183 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 566899888 9999999999999754333 666666555
No 175
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=22.92 E-value=1.4e+02 Score=21.65 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=33.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
=++-|||=|. +|..+.+.+.+.+.+-.. -|..||.-.+. .+.+..++|.+
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~--~~~~~~~~d~i 203 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHN--VRETLSITDRA 203 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC--HHHHHHhCCEE
Confidence 3677999988 999999999998875433 35666666554 23333444443
No 176
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=22.85 E-value=51 Score=22.33 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=10.9
Q ss_pred eeecccEEEEeecc
Q psy11721 85 LSWKGSYVVTQFLS 98 (99)
Q Consensus 85 fG~hGs~llvr~~~ 98 (99)
.-+.+|+++||+|.
T Consensus 41 vRil~~~VMVRVGG 54 (73)
T smart00243 41 VRILRSTVMVRVGG 54 (73)
T ss_pred EEEeCCeEEEEECC
Confidence 34578999999974
No 177
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.73 E-value=1.2e+02 Score=21.92 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=28.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.+..-+.. |..||.=.+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~ 186 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHI 186 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 577899887 9999999999999854433 6666655553
No 178
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=22.55 E-value=1.2e+02 Score=22.90 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+.+...+++.+.+-....|-.||.-.+.
T Consensus 170 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 170 KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3777899888 999999999998885443445555555553
No 179
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=22.52 E-value=1.6e+02 Score=21.37 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+.+.|.+-.+. ..||.-.+. .+.+..++|.+
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~--~~~~~~~~d~i 210 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHN--MQQAARVADRT 210 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEecc--HHHHHHhCCEE
Confidence 567899888 9999999999999865444 455555554 33444455543
No 180
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=22.36 E-value=48 Score=25.93 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.5
Q ss_pred cccCcCCCceEEEec
Q psy11721 3 HIRLNKIQDWVVHLD 17 (99)
Q Consensus 3 ~~~~~~~ddWi~HlD 17 (99)
.|-.+.+|.|+++||
T Consensus 136 rV~~~s~d~W~V~LD 150 (199)
T PF11444_consen 136 RVKVLSPDSWTVWLD 150 (199)
T ss_pred ceEEeCCCcEEEEEE
Confidence 455678999999999
No 181
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=22.35 E-value=1.3e+02 Score=24.76 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=35.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+.+.+.+.+.+=... |..||.-.+. .+.+..+||-+
T Consensus 424 lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd--~~~~~~~~d~v 473 (500)
T TIGR02633 424 VLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSE--LAEVLGLSDRV 473 (500)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCC--HHHHHHhCCEE
Confidence 678999998 9999999999988754433 6667777775 34444455544
No 182
>PF13761 DUF4166: Domain of unknown function (DUF4166)
Probab=22.35 E-value=22 Score=25.95 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=25.7
Q ss_pred hhheeccceeecccchhhhhhhhhhcCcceeee
Q psy11721 55 NWVTTLADSFRVADDMGKLRLQFSLFHKPLLSW 87 (99)
Q Consensus 55 n~lt~~aDs~Rv~DD~~r~~~q~~~~~~P~fG~ 87 (99)
-||+--+.+.=..|| ++|+|..++ +.|++|-
T Consensus 123 ~~L~p~~~~~E~~d~-~~f~f~V~v-~~Pl~G~ 153 (162)
T PF13761_consen 123 RWLTPRAEAREHYDD-GRFRFDVEV-SNPLLGP 153 (162)
T ss_pred cccCCcEEEEEEEeC-CEEEEEEEE-ECCceee
Confidence 456666777778888 999999999 8999885
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=22.30 E-value=1.4e+02 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+.+.+.+.+.+-....|-.||.-.+.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 456798887 999999999999986444445566665554
No 184
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.20 E-value=1.7e+02 Score=21.57 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+.+.+..-.. |..+|.-.+.
T Consensus 167 lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~ 204 (250)
T PRK14247 167 VLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHF 204 (250)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 566899888 999999999999986432 5455555443
No 185
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=22.20 E-value=1.3e+02 Score=24.88 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=28.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+.+.|.+-.. -|..||.-.+.
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~ 193 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHK 193 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 788999998 999999999999875322 25556655553
No 186
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.13 E-value=1.7e+02 Score=21.64 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=33.4
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
-++-|||=|. +|+.+...+.+.|..-+ . |-.||.-.+. .+.+..+||.+
T Consensus 167 ~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~--~~~~~~~~d~i 216 (251)
T PRK14249 167 EVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHN--MQQAARASDWT 216 (251)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCC--HHHHHhhCCEE
Confidence 4677899887 99999999999887543 2 5567776664 23333444443
No 187
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.89 E-value=1.2e+02 Score=23.95 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=29.4
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+.+-+.+.+.+.+=.+..|..+|.-.+.
T Consensus 120 ~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4788999988 999999999998875433445555555543
No 188
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=21.75 E-value=1.4e+02 Score=22.26 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
++-|||=|. +|..+.+.+++.+.+-... |..||.-.+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH 196 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLH 196 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 567899888 9999999999999853322 555555555
No 189
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=21.68 E-value=1.2e+02 Score=25.29 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+.+.+++.+.+-++..|-.||.=.+.
T Consensus 177 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 177 LLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred EEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 678999998 999999999999986433345555555443
No 190
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=21.67 E-value=1.2e+02 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGK 38 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~ 38 (99)
++.|||=|. ||+.+...+.+.|..=+
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 688999998 99999999999998433
No 191
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=21.52 E-value=1.4e+02 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.8
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHh
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLD 36 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~ 36 (99)
=++-|||=|. +|+.+.+.+.+.+.+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 4678999988 999999999998874
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.45 E-value=1.8e+02 Score=21.51 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+..-+. |..||.-.+.
T Consensus 167 lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~ 204 (250)
T PRK14245 167 VLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHN 204 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCC
Confidence 677899888 999999999999986533 4456655553
No 193
>KOG3708|consensus
Probab=21.27 E-value=92 Score=28.54 Aligned_cols=44 Identities=11% Similarity=0.345 Sum_probs=36.9
Q ss_pred cCcCCCceEEEecCccccChhhHHHHHHHHH--------------hCCeecceeEEEc
Q psy11721 5 RLNKIQDWVVHLDEETLLTENSIRGVLNFVL--------------DGKHHFGQGLITY 48 (99)
Q Consensus 5 ~~~~~ddWi~HlDEET~v~~~si~gi~~Fi~--------------~g~~~~GqGiI~Y 48 (99)
++.+++||.+-+-|.|+|+.--+..++++.. .|.|+.+-|++.-
T Consensus 93 ~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs~rC~l~~G~LLS 150 (681)
T KOG3708|consen 93 MVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGSGRCRLDTGMLLS 150 (681)
T ss_pred hhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCccCccccccceeec
Confidence 4778999999999999999999999998875 3456777777764
No 194
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.25 E-value=1e+02 Score=19.08 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.0
Q ss_pred ccccChhhHHHHHHHHHhCCe
Q psy11721 19 ETLLTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 19 ET~v~~~si~gi~~Fi~~g~~ 39 (99)
+|.+|.+|+.-|++-|+.|..
T Consensus 16 ntgLd~etL~ici~L~e~GVn 36 (48)
T PF12554_consen 16 NTGLDRETLSICIELCENGVN 36 (48)
T ss_pred cCCCCHHHHHHHHHHHHCCCC
Confidence 478999999999999998865
No 195
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=21.24 E-value=1.3e+02 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+.+.|..-...-|..||.-.+.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 567999888 999999999999985433346667766664
No 196
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.15 E-value=1.3e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||..+-..+++.+.+=.+..|-.||.-.+.
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 678999988 999999999998875433445556655554
No 197
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.13 E-value=1.6e+02 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.+..-++ |-.||.-.+.
T Consensus 175 llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~ 212 (258)
T PRK14268 175 IILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHN 212 (258)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECC
Confidence 677899888 999999999999986432 4445544443
No 198
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=21.11 E-value=1.7e+02 Score=23.04 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
+.-||++ .||..|+-.+|+.+.+-+ ....+=-||+++.+.
T Consensus 66 ~~i~V~F-~~~~kvgvk~ir~~~~~~--~~e~~~r~IlV~q~~ 105 (206)
T PLN03111 66 KKILVFF-PEEEKVGVKTIKTYAERM--KDENVSRAILVLQSK 105 (206)
T ss_pred CcEEEEe-CCCCccCHHHHHHHHHHH--hhcCcceEEEEECCC
Confidence 4459988 566689999999999843 334566789999876
No 199
>PRK13409 putative ATPase RIL; Provisional
Probab=20.90 E-value=1.3e+02 Score=26.17 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=37.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFR 65 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~R 65 (99)
++-|||=|- ||..+...+++.|.+=....|..||.-.+. .+.+..+||-+=
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD--~~~~~~~aDrvi 525 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD--IYMIDYISDRLM 525 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCEEE
Confidence 677999998 999999999999986555556677777765 344445555443
No 200
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=20.79 E-value=1.6e+02 Score=21.58 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=28.1
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+++.+.+.+.|..=+. -|-.+|.-.+.
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~ 200 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHE 200 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 3677899888 999999999999985332 25555555443
No 201
>PF13096 CENP-P: CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
Probab=20.69 E-value=54 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.6
Q ss_pred ceEEEecCccccCh
Q psy11721 11 DWVVHLDEETLLTE 24 (99)
Q Consensus 11 dWi~HlDEET~v~~ 24 (99)
.|.+|+|||-.+.+
T Consensus 119 vW~i~IdeeG~v~P 132 (177)
T PF13096_consen 119 VWKIHIDEEGKVLP 132 (177)
T ss_pred EEEEEECCCCceee
Confidence 79999999977654
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=20.38 E-value=1.6e+02 Score=21.58 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|..+.+.+.+.+.+-... |-.||.=.+. .+.+..++|.+
T Consensus 163 llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~--~~~~~~~~d~i 212 (224)
T cd03220 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHD--PSSIKRLCDRA 212 (224)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC--HHHHHHhCCEE
Confidence 567899887 9999999999988753333 4455554444 33344445533
No 203
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=20.32 E-value=1.5e+02 Score=21.70 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+.+.+.+-+. .|-.||.-.+.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~ 196 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHN 196 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcC
Confidence 567899887 999999988888875332 35566666654
No 204
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.21 E-value=1.7e+02 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+|++.||.|...+++.+..+++.+++|
T Consensus 90 ~gd~vv~~DaD~q~~p~~i~~l~~~~~~~ 118 (325)
T PRK10714 90 TGDLIITLDADLQNPPEEIPRLVAKADEG 118 (325)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999988765
No 205
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=20.20 E-value=1.7e+02 Score=21.86 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+.+.+.+-+.+ |..||.-.+. .+.+..+||.+
T Consensus 154 llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~--~~~~~~~~d~i 203 (248)
T PRK03695 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHD--LNHTLRHADRV 203 (248)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecC--HHHHHHhCCEE
Confidence 777899888 9999999999999854433 5556555554 23333445544
No 206
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=20.17 E-value=47 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=25.9
Q ss_pred eeecccchhhhhhhhhhcCcceeeec-ccEEEEeec
Q psy11721 63 SFRVADDMGKLRLQFSLFHKPLLSWK-GSYVVTQFL 97 (99)
Q Consensus 63 s~Rv~DD~~r~~~q~~~~~~P~fG~h-Gs~llvr~~ 97 (99)
+...++|+.+|+|+..- ..+.++|+ |.|+.++..
T Consensus 3 ~~~~s~~v~~~~l~~~~-~~~~~~~~pGQ~v~l~~~ 37 (220)
T cd06197 3 SEVITPTLTRFTFELSP-PDVVGKWTPGQYITLDFS 37 (220)
T ss_pred ceecccceeEEEEEecC-CccccccCCCceEEEEcc
Confidence 44568899899888765 45678885 999998853
No 207
>PRK13409 putative ATPase RIL; Provisional
Probab=20.13 E-value=1.7e+02 Score=25.53 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=33.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||..+...++++|..=.. |-.||.-.+. .+.+..++|-+
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd--~~~l~~~~D~v 281 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHD--LAVLDYLADNV 281 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCC--HHHHHHhCCEE
Confidence 788999888 999999999999985433 6666666554 33344444433
No 208
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.06 E-value=1.4e+02 Score=22.57 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=27.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|..+...+++.|..=....|..||.=.+.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899888 999999999888874333334455544443
Done!