Query psy11721
Match_columns 99
No_of_seqs 32 out of 34
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:15:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcv_A Putative glycosyltransf 85.7 0.67 2.3E-05 31.5 3.2 29 9-37 84-112 (240)
2 4fix_A UDP-galactofuranosyl tr 82.3 1.6 5.5E-05 36.7 4.7 32 9-40 268-299 (657)
3 1qg8_A Protein (spore coat pol 80.9 2.2 7.5E-05 29.2 4.3 29 9-37 88-116 (255)
4 1xhb_A Polypeptide N-acetylgal 75.8 2.7 9.4E-05 32.3 3.9 39 9-47 114-152 (472)
5 2z86_A Chondroitin synthase; G 75.4 3.2 0.00011 33.1 4.3 32 9-40 174-205 (625)
6 2nxv_A ATP synthase subunits r 73.3 1.9 6.6E-05 30.7 2.3 28 9-36 74-101 (249)
7 2ffu_A Ppgalnact-2, polypeptid 66.1 5.7 0.00019 31.0 3.8 39 9-47 146-184 (501)
8 2j0a_A Beta-1,3-N-acetylglucos 65.1 4 0.00014 30.7 2.6 25 8-32 92-116 (280)
9 4hg6_A Cellulose synthase subu 63.8 4.8 0.00016 34.2 3.2 43 9-51 238-281 (802)
10 2d7i_A Polypeptide N-acetylgal 63.4 5.4 0.00019 32.2 3.3 42 9-50 196-237 (570)
11 3a5z_B EF-P, elongation factor 53.9 1.9 6.7E-05 31.8 -0.8 33 6-39 79-115 (191)
12 1g6h_A High-affinity branched- 53.5 13 0.00045 27.0 3.7 49 13-64 174-223 (257)
13 3tre_A EF-P, elongation factor 50.9 3.5 0.00012 30.3 0.2 32 7-39 80-115 (191)
14 2yz2_A Putative ABC transporte 48.6 18 0.00061 26.4 3.8 38 13-51 159-197 (266)
15 2z86_A Chondroitin synthase; G 47.3 26 0.00089 27.8 4.7 29 9-37 454-482 (625)
16 1yby_A Translation elongation 47.2 2.4 8.2E-05 32.0 -1.2 32 7-39 105-140 (215)
17 2qi9_C Vitamin B12 import ATP- 47.1 17 0.00057 26.6 3.4 48 13-63 154-202 (249)
18 2zu0_C Probable ATP-dependent 46.2 44 0.0015 24.4 5.5 38 13-51 185-223 (267)
19 2nq2_C Hypothetical ABC transp 45.2 17 0.00058 26.5 3.1 39 13-51 149-188 (253)
20 2olj_A Amino acid ABC transpor 44.8 19 0.00063 26.7 3.3 49 13-64 180-229 (263)
21 3ckj_A Putative uncharacterize 42.7 30 0.001 25.4 4.2 39 9-47 131-171 (329)
22 2pcj_A ABC transporter, lipopr 40.3 32 0.0011 24.3 3.9 48 13-64 161-209 (224)
23 1b0u_A Histidine permease; ABC 39.6 25 0.00085 25.7 3.3 49 13-64 174-223 (262)
24 3tif_A Uncharacterized ABC tra 38.9 27 0.00091 25.0 3.3 49 13-64 166-215 (235)
25 2ihy_A ABC transporter, ATP-bi 38.8 20 0.00067 26.7 2.7 37 13-50 182-221 (279)
26 1vpl_A ABC transporter, ATP-bi 38.0 29 0.001 25.4 3.5 49 13-64 167-216 (256)
27 3f1y_A Mannosyl-3-phosphoglyce 37.8 24 0.00082 27.5 3.1 37 9-45 179-217 (387)
28 1f2t_B RAD50 ABC-ATPase; DNA d 37.6 67 0.0023 21.6 5.0 39 12-51 83-122 (148)
29 1sgw_A Putative ABC transporte 37.2 20 0.00068 25.7 2.4 38 13-51 154-192 (214)
30 3oyy_A EF-P, elongation factor 35.1 5.2 0.00018 29.5 -1.1 31 7-39 78-112 (191)
31 1bkb_A Translation initiation 34.5 12 0.0004 25.7 0.8 31 9-39 84-119 (136)
32 3tui_C Methionine import ATP-b 34.4 27 0.00092 27.7 2.9 39 13-51 184-223 (366)
33 4g1u_C Hemin import ATP-bindin 34.1 35 0.0012 25.1 3.4 41 11-51 166-207 (266)
34 2ixe_A Antigen peptide transpo 32.0 73 0.0025 23.3 4.8 39 13-51 177-216 (271)
35 1ueb_A EF-P, TT0860, elongatio 31.7 5.7 0.00019 29.0 -1.3 31 7-39 75-109 (184)
36 3gfo_A Cobalt import ATP-bindi 30.1 40 0.0014 25.0 3.1 39 13-51 164-203 (275)
37 3j16_B RLI1P; ribosome recycli 29.5 38 0.0013 28.3 3.2 51 13-65 488-539 (608)
38 2d2e_A SUFC protein; ABC-ATPas 29.3 84 0.0029 22.5 4.7 38 13-51 164-202 (250)
39 2pjz_A Hypothetical protein ST 29.2 1E+02 0.0035 22.6 5.2 44 13-62 149-193 (263)
40 3ozx_A RNAse L inhibitor; ATP 28.8 41 0.0014 27.5 3.2 53 13-67 406-459 (538)
41 1yqt_A RNAse L inhibitor; ATP- 28.1 41 0.0014 27.3 3.1 49 13-63 422-471 (538)
42 2onk_A Molybdate/tungstate ABC 26.9 28 0.00096 25.2 1.7 50 13-64 147-197 (240)
43 3qf7_A RAD50; ABC-ATPase, ATPa 25.0 85 0.0029 23.9 4.2 38 13-51 306-344 (365)
44 1ji0_A ABC transporter; ATP bi 24.2 61 0.0021 23.1 3.1 49 13-64 160-209 (240)
45 3bk7_A ABC transporter ATP-bin 24.0 56 0.0019 27.2 3.2 49 13-63 492-541 (607)
46 3j16_B RLI1P; ribosome recycli 23.5 86 0.0029 26.2 4.3 49 13-64 242-291 (608)
47 2ghi_A Transport protein; mult 22.4 1.2E+02 0.0042 21.9 4.5 37 13-51 176-213 (260)
48 3kta_B Chromosome segregation 22.0 99 0.0034 21.4 3.8 34 13-47 89-123 (173)
49 1yqt_A RNAse L inhibitor; ATP- 21.6 71 0.0024 25.9 3.3 38 13-51 179-217 (538)
50 3ug7_A Arsenical pump-driving 21.3 64 0.0022 24.4 2.8 36 11-46 309-344 (349)
51 2ff7_A Alpha-hemolysin translo 20.8 1.3E+02 0.0046 21.5 4.4 37 13-51 166-203 (247)
52 3bk7_A ABC transporter ATP-bin 20.5 75 0.0026 26.4 3.3 38 13-51 249-287 (607)
No 1
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=85.70 E-value=0.67 Score=31.47 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=26.4
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+||+.||.|..+.++.+..+++.+...
T Consensus 84 ~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 84 TGEYVAFCDSDDYVDSDMYMTMYNVAQKY 112 (240)
T ss_dssp CSSEEEECCTTCCCCTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHHHHhc
Confidence 45899999999999999999999999863
No 2
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=82.26 E-value=1.6 Score=36.70 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCee
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHH 40 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~ 40 (99)
+.+||+.||+|+.+.++.|..+++++......
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~ 299 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAP 299 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSC
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCc
Confidence 46899999999999999999999999876553
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=80.86 E-value=2.2 Score=29.21 Aligned_cols=29 Identities=0% Similarity=0.095 Sum_probs=26.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
+.+||+.||.|..+.++.+..+++.+...
T Consensus 88 ~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 88 EGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp CCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 46899999999999999999999999865
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=75.79 E-value=2.7 Score=32.31 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=31.6
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT 47 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~ 47 (99)
..+||+.||.|+.+.++.|..+++++..+.....-|.+.
T Consensus 114 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~ 152 (472)
T 1xhb_A 114 RGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIID 152 (472)
T ss_dssp CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEE
T ss_pred cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeee
Confidence 358999999999999999999999999766543344443
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=75.38 E-value=3.2 Score=33.06 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=28.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCee
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHH 40 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~ 40 (99)
+.+||+.||.|..++++.+..++.++......
T Consensus 174 ~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~ 205 (625)
T 2z86_A 174 KYNYVAILDCDMAPNPLWVQSYMELLAVDDNV 205 (625)
T ss_dssp CSSEEEEECTTEEECTTHHHHHHHHHHHCTTE
T ss_pred CcCEEEEECCCCCCCHHHHHHHHHHHhcCCce
Confidence 46899999999999999999999999865543
No 6
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=73.25 E-value=1.9 Score=30.68 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHh
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLD 36 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~ 36 (99)
+-+|+++||.||.++++.+..+++++..
T Consensus 74 ~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 74 KGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 3589999999999999999999999875
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=66.09 E-value=5.7 Score=31.01 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEE
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT 47 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~ 47 (99)
..+||+.||.|..+.++.|..+++.+..+...+-.+.+.
T Consensus 146 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~ 184 (501)
T 2ffu_A 146 QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIID 184 (501)
T ss_dssp CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeec
Confidence 358999999999999999999999999776644445553
No 8
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=65.09 E-value=4 Score=30.68 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=21.7
Q ss_pred CCCceEEEecCccccChhhHHHHHH
Q psy11721 8 KIQDWVVHLDEETLLTENSIRGVLN 32 (99)
Q Consensus 8 ~~ddWi~HlDEET~v~~~si~gi~~ 32 (99)
.+-+|+++.||||+|-.+.|+..|.
T Consensus 92 ~~~~Wf~~~DDDtyv~~~nL~~~L~ 116 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVNPKALLQLLK 116 (280)
T ss_dssp HTCSEEEEEETTEEECHHHHHHHHT
T ss_pred CCCcEEEEeCCCcEEcHHHHHHHHH
Confidence 4779999999999998888877775
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=63.82 E-value=4.8 Score=34.24 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC-CeecceeEEEcCCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG-KHHFGQGLITYANE 51 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g-~~~~GqGiI~Y~~~ 51 (99)
+.+||+.+|.|+.+++++++.++.++++. +..+-||-..+.+.
T Consensus 238 ~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~ 281 (802)
T 4hg6_A 238 KGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINP 281 (802)
T ss_dssp CCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSC
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCC
Confidence 56899999999999999999999999644 44566776666554
No 10
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=63.39 E-value=5.4 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=33.3
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhCCeecceeEEEcCC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 50 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~ 50 (99)
..+||+.||.|+.+.++.|..+++.+..+......+.|.+.+
T Consensus 196 ~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~ 237 (570)
T 2d7i_A 196 TGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVID 237 (570)
T ss_dssp CSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred CCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccC
Confidence 358999999999999999999999998766544445555444
No 11
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=53.91 E-value=1.9 Score=31.77 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.9
Q ss_pred CcCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 6 LNKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 6 ~~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
|..++.| ++||.||+ |..+.+-.-++|+.+|..
T Consensus 79 Y~dgd~~-~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~ 115 (191)
T 3a5z_B 79 YNDGEFW-HFMNNETFEQLSADAKAIGDNAKWLLDQAE 115 (191)
T ss_dssp EECSSCE-EEECTTTCCEEEECHHHHCTTTTTCCSSEE
T ss_pred EeCCCEE-EEeeCCCCeEEEccHHHhhhHHhhcCCCCE
Confidence 3455666 89999998 899988888999998866
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=53.51 E-value=13 Score=26.98 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.|.+-++. |..||.-.+. .+.+..+||-+
T Consensus 174 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd--~~~~~~~~d~v 223 (257)
T 1g6h_A 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHR--LDIVLNYIDHL 223 (257)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC--CSTTGGGCSEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecC--HHHHHHhCCEE
Confidence 678999998 9999999999999854444 6677766654 23334445533
No 13
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=50.94 E-value=3.5 Score=30.31 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=26.0
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++.| ++||.||+ |.++.+-.-++|+.+|..
T Consensus 80 ~dgd~~-~FMD~etyEq~~l~~~~lgd~~~~L~eg~~ 115 (191)
T 3tre_A 80 NDGEFW-HFMTSENYEQHAASKEAVAEAKQWLKEEAL 115 (191)
T ss_dssp ECSSCE-EEEESSSCCEEEECHHHHGGGGGGCCTTCE
T ss_pred EcCCcE-EEccCCchHheecchhHhhhHHhhCCCCCE
Confidence 345555 49999988 899999899999998866
No 14
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=48.62 E-value=18 Score=26.45 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|.+-.+. |-.||.-.+.
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd 197 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHD 197 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC
Confidence 678999998 9999999999999854334 6666665553
No 15
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=47.34 E-value=26 Score=27.78 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCceEEEecCccccChhhHHHHHHHHHhC
Q psy11721 9 IQDWVVHLDEETLLTENSIRGVLNFVLDG 37 (99)
Q Consensus 9 ~ddWi~HlDEET~v~~~si~gi~~Fi~~g 37 (99)
..+||+.||.|..+.++.|..+++.+..+
T Consensus 454 ~g~~i~~ld~D~~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 454 RGFYIGQLDSDDFLEPDAVELCLDEFRKD 482 (625)
T ss_dssp CSSEEEECCTTCEECTTHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcccChhHHHHHHHHHHhC
Confidence 45899999999999999999999888644
No 16
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=47.22 E-value=2.4 Score=31.97 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.7
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++.| ++||.||+ |..+.+..-++|+.+|..
T Consensus 105 ~Dgd~y-~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~ 140 (215)
T 1yby_A 105 NDGDLY-YFMDTETFEQLPLGKDKIGDALKFVKENEI 140 (215)
T ss_dssp EETTEE-EEECTTTCCEEEEEHHHHTTTTTTCCTTCE
T ss_pred eCCCEE-EEccCCCCeeEEecHHHhhhHHhhCCCCCE
Confidence 445555 89999998 788888888899998866
No 17
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=47.07 E-value=17 Score=26.62 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
++-|||=|. ||+.+...+++.+.+-.+. |..||.-.+. .+.+..+||-
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd--~~~~~~~~d~ 202 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD--LNHTLRHAHR 202 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC--HHHHHHHCSE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC--HHHHHHhCCE
Confidence 788999998 9999999999999854434 6667666654 3334344443
No 18
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.23 E-value=44 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|..=+.. |-.||.-.+.
T Consensus 185 lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd 223 (267)
T 2zu0_C 185 LCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHY 223 (267)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeC
Confidence 678999998 9999999999999865433 6667665554
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=45.20 E-value=17 Score=26.53 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=29.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.|.+-.+..|-.||.-.+.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 678999998 999999999999985433335566665554
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=44.77 E-value=19 Score=26.66 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=35.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+.+.+++.|.+=... |..||.=.+. .+.+..+||-+
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd--~~~~~~~~d~v 229 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE--MGFAREVGDRV 229 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC--HHHHHHHCSEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC--HHHHHHhCCEE
Confidence 678999998 9999999999999854444 6667766554 33444455544
No 21
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=42.67 E-value=30 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCceEEEecCccc-cChhhHHHHHHHHHhC-CeecceeEEE
Q psy11721 9 IQDWVVHLDEETL-LTENSIRGVLNFVLDG-KHHFGQGLIT 47 (99)
Q Consensus 9 ~ddWi~HlDEET~-v~~~si~gi~~Fi~~g-~~~~GqGiI~ 47 (99)
..+||+.||.|.. +.++.+..+++++... ...+-.|-..
T Consensus 131 ~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~ 171 (329)
T 3ckj_A 131 RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYR 171 (329)
T ss_dssp CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEE
T ss_pred CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEec
Confidence 4589999999999 9999999999987643 3344445433
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=40.31 E-value=32 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=35.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+...+++.|.+-.+. |-.||.-.+. .+.. .+||-+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd--~~~~-~~~d~v 209 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHE--RELA-ELTHRT 209 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC--HHHH-TTSSEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCC--HHHH-HhCCEE
Confidence 778999998 9999999999999865445 7677766665 3333 456654
No 23
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.60 E-value=25 Score=25.70 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=34.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.|.+=.+. |-.||.-.+. .+.+..+||-+
T Consensus 174 lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd--~~~~~~~~d~v 223 (262)
T 1b0u_A 174 VLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE--MGFARHVSSHV 223 (262)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC--HHHHHHHCSEE
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC--HHHHHHhCCEE
Confidence 678999998 9999999999999854334 6666666554 33444455544
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.89 E-value=27 Score=25.03 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=36.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.+.+=.+..|..||.=.+.. +. ..+||-+
T Consensus 166 llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~--~~-~~~~d~i 215 (235)
T 3tif_A 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NV-ARFGERI 215 (235)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH--HH-HTTSSEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HH-HHhCCEE
Confidence 678999999 9999999999999865555677787766652 32 2455544
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.80 E-value=20 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=27.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeE--EEcCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGL--ITYAN 50 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGi--I~Y~~ 50 (99)
++-|||=|. ||+.+.+.+++.|.+-... |..| |.=.+
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtH 221 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTH 221 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEES
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEec
Confidence 678999998 9999999999999754333 4455 44444
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.97 E-value=29 Score=25.41 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=33.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.|.+-... |..||.-.+. .+.+..+||-+
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd--~~~~~~~~d~v 216 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHN--MLEVEFLCDRI 216 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECC--HHHHTTTCSEE
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCC--HHHHHHHCCEE
Confidence 678999998 9999999999999853322 5556655553 23344445543
No 27
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=37.84 E-value=24 Score=27.52 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCceEEEecCccc-cChhhHHHHHHHHHhC-CeecceeE
Q psy11721 9 IQDWVVHLDEETL-LTENSIRGVLNFVLDG-KHHFGQGL 45 (99)
Q Consensus 9 ~ddWi~HlDEET~-v~~~si~gi~~Fi~~g-~~~~GqGi 45 (99)
..+||+.||-|.. ++++.|..+++.+..+ ..++-.|.
T Consensus 179 ~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~ 217 (387)
T 3f1y_A 179 RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAA 217 (387)
T ss_dssp CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEE
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEe
Confidence 4689999999999 9999999999999876 34555554
No 28
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=37.59 E-value=67 Score=21.63 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=29.5
Q ss_pred eEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 12 WVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 12 Wi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
=++-|||=|. +|+.+...+.+.|..-... |..||.-.+.
T Consensus 83 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~ 122 (148)
T 1f2t_B 83 SLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD 122 (148)
T ss_dssp SEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESC
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEECh
Confidence 4788999888 9999999999999864333 5556655554
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=37.19 E-value=20 Score=25.68 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=29.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. +|+.+...+++.+.+-... |..||.-.+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd 192 (214)
T 1sgw_A 154 IYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSRE 192 (214)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESS
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 677999998 9999999999999854333 6667665554
No 30
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=35.07 E-value=5.2 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=24.6
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++.| ++|| ||+ |.++.+-.-++|+.+|..
T Consensus 78 ~dgd~~-~FMD-etyEq~~l~~~~lgd~~~~L~eg~~ 112 (191)
T 3oyy_A 78 FADPLY-VFMD-SEFNQYEIEKDDLEGVLTFIEDGMT 112 (191)
T ss_dssp ECSSSE-EEEE-TTCCEEEECGGGCTTTGGGCCTTCC
T ss_pred ecCCEE-EEEe-cChhheeCChHHhhhHHhhCcCCCE
Confidence 344555 5999 987 899999889999998865
No 31
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=34.46 E-value=12 Score=25.74 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=24.8
Q ss_pred CCceEEEecCccc----cChhh-HHHHHHHHHhCCe
Q psy11721 9 IQDWVVHLDEETL----LTENS-IRGVLNFVLDGKH 39 (99)
Q Consensus 9 ~ddWi~HlDEET~----v~~~s-i~gi~~Fi~~g~~ 39 (99)
+++=+++||+||+ |..+. +..+++|+.+|..
T Consensus 84 dg~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~ 119 (136)
T 1bkb_A 84 SGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAE 119 (136)
T ss_dssp CSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCE
T ss_pred cCCEEEEEeCCCCeEEEeccccchhHHHhhCCCCCE
Confidence 4556789999987 67888 8889999987654
No 32
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=34.44 E-value=27 Score=27.65 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+-+.|++.+.+=.+..|-.||.=.+.
T Consensus 184 lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 688999999 999999999999885444445555555543
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=34.13 E-value=35 Score=25.06 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=29.3
Q ss_pred ceEEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 11 DWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 11 dWi~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
-=++-|||=|. ||+.+...+++.+..=.+.-|-.||.-.+.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 34788999998 999999999998874333333455555553
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=32.04 E-value=73 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=30.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|.+-.+.-|-.||.-.+.
T Consensus 177 lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 678999998 999999999999986544346667666654
No 35
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=31.69 E-value=5.7 Score=28.99 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.3
Q ss_pred cCCCceEEEecCccc----cChhhHHHHHHHHHhCCe
Q psy11721 7 NKIQDWVVHLDEETL----LTENSIRGVLNFVLDGKH 39 (99)
Q Consensus 7 ~~~ddWi~HlDEET~----v~~~si~gi~~Fi~~g~~ 39 (99)
..++.| ++||.||+ |.++.+-.- +|+.+|..
T Consensus 75 ~dgd~~-~FMD~etyeq~~l~~~~lgd~-~~L~eg~~ 109 (184)
T 1ueb_A 75 PEGEEM-VFMDLETYEQFAVPRSRVVGA-EFFKEGMT 109 (184)
T ss_dssp EETTEE-EEEETTTCCEEEEEGGGBTTG-GGCCTTCE
T ss_pred eCCCEE-EEeeCCCceeEEcCHHHcChh-hhcCCCCE
Confidence 445666 99999998 788877666 99988876
No 36
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=30.13 E-value=40 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=28.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+.+.+++.|.+=.+.-|-.||.=.+.
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 678999998 999999999998875432225566655553
No 37
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=29.54 E-value=38 Score=28.34 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=36.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFR 65 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~R 65 (99)
++-|||=|. ||..+...+++.|..-.+..|..||.-.+. .+.+..+||-+=
T Consensus 488 lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd--l~~~~~~aDrvi 539 (608)
T 3j16_B 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD--FIMATYLADKVI 539 (608)
T ss_dssp EEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC--HHHHHHHCSEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCEEE
Confidence 678999998 999999999998876444556677776665 344444455443
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=29.32 E-value=84 Score=22.51 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=29.2
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|..-.+ -|-.||.=.+.
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 202 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHY 202 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSS
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 678999998 999999999999985433 25566665554
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=29.22 E-value=1e+02 Score=22.55 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLAD 62 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aD 62 (99)
++-|||=|. ||+.+...+++.+.+-.. .||.-.+. .+.+..+||
T Consensus 149 lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd--~~~~~~~~d 193 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHE--LDMLNLYKE 193 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESC--GGGGGGCTT
T ss_pred EEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcC--HHHHHHhcC
Confidence 788999998 999999999999986543 56555554 234445566
No 40
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=28.75 E-value=41 Score=27.48 Aligned_cols=53 Identities=13% Similarity=0.017 Sum_probs=37.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccceeecc
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVA 67 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~Rv~ 67 (99)
++-|||=|. ||..+...|++.|.+=.+..|-.||.-.+. .+.+..+||-+=+.
T Consensus 406 lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd--l~~~~~~aDri~vl 459 (538)
T 3ozx_A 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD--LSIHDYIADRIIVF 459 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHCSEEEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCEEEEE
Confidence 678999998 999999999999885544556667766665 34455555554333
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=28.10 E-value=41 Score=27.31 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=35.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
++-|||=|. ||..+...|++.|.+=....|-.||.-.+. .+.+..+||-
T Consensus 422 lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd--~~~~~~~~dr 471 (538)
T 1yqt_A 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD--VLMIDYVSDR 471 (538)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC--HHHHHHHCSE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCE
Confidence 788999999 999999999999875444456677777765 3444444443
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=26.89 E-value=28 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.8
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. +|+.+.+.+++.|.+-.+..|..||.-.+. .+.+..+||-+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd--~~~~~~~~d~i 197 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD--LIEAAMLADEV 197 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC--HHHHHHHCSEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHHhCCEE
Confidence 567899988 999999999999975444445566665554 23334445543
No 43
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.02 E-value=85 Score=23.88 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=29.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.+..=.. -|..||.=.+.
T Consensus 306 ~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~ 344 (365)
T 3qf7_A 306 AFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHD 344 (365)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESC
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 788999998 999999999999885433 36666665554
No 44
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.18 E-value=61 Score=23.11 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=33.4
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.|.+-.+ -|-.||.-.+. .+.+..+||-+
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd--~~~~~~~~d~v 209 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQN--ALGALKVAHYG 209 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESC--HHHHHHHCSEE
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC--HHHHHHhCCEE
Confidence 678999998 999999999999985433 25556665554 23334445543
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=23.99 E-value=56 Score=27.19 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=34.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheeccce
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS 63 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs 63 (99)
++-|||=|. ||..+...+++.|..=.+..|-.||.-.+. .+.+..+||-
T Consensus 492 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd--~~~~~~~adr 541 (607)
T 3bk7_A 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD--VLMIDYVSDR 541 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHCSE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCE
Confidence 788999998 999999999998875433446667666664 3444444443
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=23.53 E-value=86 Score=26.16 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=33.3
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCCchhhhheecccee
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~~~~n~lt~~aDs~ 64 (99)
++-|||=|. ||+.+...+++.|..=... |..||.=.+. .+.+..+||-+
T Consensus 242 llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd--l~~~~~~~drv 291 (608)
T 3j16_B 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHD--LSVLDYLSDFV 291 (608)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSC--HHHHHHHCSEE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC--HHHHHHhCCEE
Confidence 788999998 9999999999998854332 5566655553 23344444443
No 47
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.39 E-value=1.2e+02 Score=21.87 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=28.7
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|.+-.. |..||.-.+.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~ 213 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHR 213 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC
Confidence 678999998 999999999999985432 5566666554
No 48
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=22.03 E-value=99 Score=21.37 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=25.1
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEE
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLIT 47 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~ 47 (99)
++-|||=|. +|+.+.+.++++|..-... +|-|++
T Consensus 89 ~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivi 123 (173)
T 3kta_B 89 FYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVI 123 (173)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEE
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEE
Confidence 567899887 9999999999999854332 454443
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=21.60 E-value=71 Score=25.92 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=28.5
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|..=.. .|-.||.=.+.
T Consensus 179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd 217 (538)
T 1yqt_A 179 FYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD 217 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 788999998 999999999998874333 25566655553
No 50
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=21.33 E-value=64 Score=24.36 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=21.3
Q ss_pred ceEEEecCccccChhhHHHHHHHHHhCCeecceeEE
Q psy11721 11 DWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLI 46 (99)
Q Consensus 11 dWi~HlDEET~v~~~si~gi~~Fi~~g~~~~GqGiI 46 (99)
-..+=++.+-..+.+.++.+++.+..+.+.+||+|-
T Consensus 309 l~~iPl~~~e~~g~~~L~~~~~~l~~~~~~~~~~~~ 344 (349)
T 3ug7_A 309 IAYVPLLRTEAKGIETLKQIAKILYGEEEKEEQKIE 344 (349)
T ss_dssp EEEEECCSSCSCSHHHHHHHHHHHC-----------
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHcCCCCccccccc
Confidence 345667888889999999999999888889999983
No 51
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.77 E-value=1.3e+02 Score=21.50 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.0
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+.+.+++.|.+=. . |-.||.-.+.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~ 203 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHR 203 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCC
Confidence 678999999 99999999999998542 2 5667666654
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=20.46 E-value=75 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=28.6
Q ss_pred EEEecCccc-cChhhHHHHHHHHHhCCeecceeEEEcCCC
Q psy11721 13 VVHLDEETL-LTENSIRGVLNFVLDGKHHFGQGLITYANE 51 (99)
Q Consensus 13 i~HlDEET~-v~~~si~gi~~Fi~~g~~~~GqGiI~Y~~~ 51 (99)
++-|||=|. ||+.+...+++.|..=.+. |..||.-.+.
T Consensus 249 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHd 287 (607)
T 3bk7_A 249 FYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHD 287 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 788999998 9999999999988743332 5566665554
Done!