RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11721
         (99 letters)



>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2. 
          Members of this family of prokaryotic proteins include
          putative glucosyltransferases, which are involved in
          bacterial capsule biosynthesis.
          Length = 194

 Score = 63.1 bits (154), Expect = 9e-14
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 12 WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMG 71
          W++ LD +T+L  + +R + N +L  +    QG +T  N  V NW+  LAD    A+D G
Sbjct: 1  WILLLDADTVLPPDCLRLIANLMLSPEVALIQGPVTPRN--VRNWLERLADLEF-AEDHG 57

Query: 72 KLRLQFSLFHKPLLSWKGSYVVTQF 96
          K RL        L S  GS  + + 
Sbjct: 58 KDRLFREALGGVLPSV-GSGALFRR 81


>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
          Length = 384

 Score = 31.3 bits (72), Expect = 0.052
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 45  LITYANE---EVVNWVTTLADSFRVADD 69
           LI   N+   EVV+  T L D+F+ ADD
Sbjct: 163 LIVIPNDKLLEVVDKKTPLLDAFKAADD 190


>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
           V transport a variety of intracellular cargo
           processively along actin filaments, such as membraneous
           organelles and mRNA. This catalytic (head) domain has
           ATPase activity and belongs to the larger group of
           P-loop NTPases. Myosins are actin-dependent molecular
           motors that play important roles in muscle contraction,
           cell motility, and organelle transport. The head domain
           is a molecular motor, which utilizes ATP hydrolysis to
           generate directed movement toward the plus end along
           actin filaments. A cyclical interaction between myosin
           and actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle.
          Length = 691

 Score = 29.2 bits (66), Expect = 0.30
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 11  DWVVHLDEETLLTENSIRGVLNF--VLD--GKHHFG-----QGLITYANE 51
           DW+V +  ++L T    +   +F  VLD  G   F      Q  I YANE
Sbjct: 347 DWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396


>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
           Members of this family of prokaryotic proteins include
           putative glucosyltransferase, which are involved in
           bacterial capsule biosynthesis.
          Length = 229

 Score = 28.9 bits (65), Expect = 0.34
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 11  DWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF 64
           D VV LD ++++  +++R +L F L       QG +   N      V  L    
Sbjct: 88  DLVVLLDADSVVDPDTLRRLLPFFLSKGVGAVQGPVFVLNLR--TAVAPLYALE 139


>gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 490

 Score = 27.6 bits (62), Expect = 1.2
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 14/75 (18%)

Query: 15  HLDEETLLTE-------NSIRGVLNFVLDGKHHFGQGLI-TYANEEVVNWVTTL----AD 62
            L     L E         + GVL   L  K    +GLI    N E  + +  L    A 
Sbjct: 86  ALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASLIGGLPVYGAR 145

Query: 63  SFRVADDM--GKLRL 75
                 +   GKLRL
Sbjct: 146 YLEEVVNFLEGKLRL 160


>gnl|CDD|227663 COG5369, COG5369, Uncharacterized conserved protein [Function
          unknown].
          Length = 743

 Score = 24.9 bits (54), Expect = 8.4
 Identities = 8/44 (18%), Positives = 12/44 (27%)

Query: 55 NWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQFLS 98
            V   +     A     LRL  +L         G+Y      +
Sbjct: 34 QGVIDCSQRDEQALFNKSLRLLITLNELEKRDITGTYYFLLVET 77


>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease
           GltK; Provisional.
          Length = 224

 Score = 24.8 bits (54), Expect = 9.8
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 43  QGLITYANEEVVNWVTTLADSFRVADDMGK 72
           QG++ + +  +V +V +LAD FR A  +G+
Sbjct: 161 QGIVLFQDTSLV-YVLSLADFFRTASTIGE 189


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,040,586
Number of extensions: 414946
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 11
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)