RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11721
(99 letters)
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 30.0 bits (68), Expect = 0.086
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LIT NE ++ +L +F ADD
Sbjct: 161 LITIPNEKLLTILGKDASLLAAFAKADD 188
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 30.0 bits (68), Expect = 0.090
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LI N+ ++ + +L D+FR AD+
Sbjct: 161 LIVIPNDRLLQMGDAAVSLMDAFRSADE 188
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 30.0 bits (68), Expect = 0.10
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LI N+ ++V+ T + ++F+ AD+
Sbjct: 167 LIVIPNDRLLDIVDKSTPMMEAFKEADN 194
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 29.9 bits (68), Expect = 0.11
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LI N+ E+V+ T + ++FR AD+
Sbjct: 161 LIVIPNDRILEIVDKNTPMLEAFREADN 188
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 29.9 bits (68), Expect = 0.11
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
I N+ E+ N T+ D+F+ D
Sbjct: 157 YIVIHNDKIKELSNRTLTIKDAFKEVDS 184
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LIT NE ++ +L +F ADD
Sbjct: 161 LITIPNEKLLTILGKDASLLAAFAKADD 188
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 29.5 bits (67), Expect = 0.13
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 45 LITYANE---EVVNWVTTLADSFRVADD 69
LI +N E + + D+F AD+
Sbjct: 171 LIKISNNKLMEELPRDVKIKDAFLKADE 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
2adb_A
Length = 164
Score = 28.9 bits (64), Expect = 0.18
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 25 NSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFS 78
+ VL + K++ Q L+ YA+ D + + LR+ FS
Sbjct: 68 SKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.75
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 37 GKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFH 81
G G G+ Y + V AD+ D G FS+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNH-FKDTYG-----FSILD 1663
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide
binding, RNA recognition motif; 1.40A {Homo sapiens}
PDB: 3zzz_A
Length = 130
Score = 26.1 bits (57), Expect = 1.4
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 30 VLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFS 78
VL + K++ Q L+ YA+ D + + LR+ FS
Sbjct: 55 VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 25.7 bits (57), Expect = 2.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 45 LITYANEEVVNWV--TTLADSFRVADD 69
L+ NE++ V L +F+VAD+
Sbjct: 187 LVVIPNEKLFEIVPNMPLKLAFKVADE 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,548,822
Number of extensions: 78909
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 14
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)