RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11721
         (99 letters)



>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 198

 Score = 24.1 bits (52), Expect = 3.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 52  EVVNWVTTLADSFRVADD 69
           ++ +   +L D+FR AD+
Sbjct: 161 QMGDAAVSLMDAFRSADE 178


>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter
          lyticus, strain m497-1 [TaxId: 224]}
          Length = 263

 Score = 24.2 bits (51), Expect = 3.9
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 24 ENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLA 61
           + IR V  +   G       L+     +   +  T  
Sbjct: 19 RDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAH 56


>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
           maritima [TaxId: 2336]}
          Length = 194

 Score = 23.8 bits (51), Expect = 4.1
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 52  EVVNWVTTLADSFRVADD 69
           E +     + D+F  AD+
Sbjct: 160 EELPRDVKIKDAFLKADE 177


>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 198

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 52  EVVNWVTTLADSFRVADD 69
            ++    +L  +F  ADD
Sbjct: 161 TILGKDASLLAAFAKADD 178


>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId:
           10923]}
          Length = 157

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 55  NWVTTLADSFRVADDMGKLRLQFS 78
           NW+   +   ++ +D+ KLR+  S
Sbjct: 80  NWLADTSRPAKLDEDVNKLRMMLS 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,408
Number of extensions: 14489
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 5
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)