BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11724
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01346|EGH_DROME Beta-1,4-mannosyltransferase egh OS=Drosophila melanogaster GN=egh
PE=2 SV=1
Length = 457
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/237 (76%), Positives = 204/237 (86%)
Query: 86 DPWVRYGFFGCSILYILRYLTFLPLPQVLFNFAGLVFYNAFPDKVVLKGSPLLAPFICIR 145
DPW YG +LY+LR+LT L LPQVLFNF GLVFYNAFP+KVVLKGSPLLAPFICIR
Sbjct: 39 DPWTEYGQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIR 98
Query: 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTK 205
+VTRGD+ LVK NV RNM C + GLEN++IEVVTDK V L HRRIRE+VVPK YKT+
Sbjct: 99 VVTRGDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTR 158
Query: 206 SGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLI 265
+GALFK+RALQYCLEDNVN+L+ SDW+VHLDEETLLTENS+RG++NFVLDGKH FGQGLI
Sbjct: 159 TGALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLI 218
Query: 266 TYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS 322
TYANE VVNW+TTLADSFRV+DDMGKLRLQF LFHKPL SWKGSYVVTQ+ + S
Sbjct: 219 TYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVS 275
>sp|Q03562|BRE3_CAEEL Beta-1,4-mannosyltransferase bre-3 OS=Caenorhabditis elegans
GN=bre-3 PE=2 SV=2
Length = 455
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/243 (63%), Positives = 186/243 (76%), Gaps = 3/243 (1%)
Query: 80 TPESTFDPWVRYGFFGCSILYILRYLTFLPLPQVLFNFAGLVFYNAFPDKVVLKGSPLLA 139
PES P YG LY+LR+ L LPQ L N GL+ +NAF +KV LK +PLL+
Sbjct: 36 VPES---PVASYGLIWTVCLYLLRFTALLVLPQCLCNLGGLMMFNAFREKVQLKAAPLLS 92
Query: 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVP 199
PF+C R+VT+G++ LVK+N+ NM C EAG+EN+I EVVTDK + LP + R+REVVVP
Sbjct: 93 PFVCFRVVTKGNFPLLVKENIDTNMKTCFEAGMENFIFEVVTDKAINLPPNPRVREVVVP 152
Query: 200 KSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHH 259
YKTKSGA FKARALQYCLED+VNIL +DW+VHLDEETLLT N+I G+LNF DGKH
Sbjct: 153 TVYKTKSGAKFKARALQYCLEDDVNILQPTDWIVHLDEETLLTTNAICGILNFCEDGKHQ 212
Query: 260 FGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSK 319
FGQG+ITYAN ++VNW+TTL+DSFRVADDMGKLR QF LFHKPL WKGSYVVTQ++ +
Sbjct: 213 FGQGVITYANGDIVNWLTTLSDSFRVADDMGKLRFQFKLFHKPLFGWKGSYVVTQVEAER 272
Query: 320 KRS 322
S
Sbjct: 273 DVS 275
>sp|A8XAC4|BRE3_CAEBR Beta-1,4-mannosyltransferase bre-3 OS=Caenorhabditis briggsae
GN=bre-3 PE=3 SV=1
Length = 455
Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 153/242 (63%), Positives = 187/242 (77%), Gaps = 3/242 (1%)
Query: 81 PESTFDPWVRYGFFGCSILYILRYLTFLPLPQVLFNFAGLVFYNAFPDKVVLKGSPLLAP 140
PES P YG LY+LR+ L LPQ L N GL+ +NAF +KV LK +PLL+P
Sbjct: 37 PES---PVASYGLVWTICLYLLRFTALLVLPQCLCNLCGLMMFNAFREKVQLKAAPLLSP 93
Query: 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPK 200
F+C R+VT+G++ LVK+N+ NM C EAG+EN+I EVVTDK + LP + R+REVVVP
Sbjct: 94 FVCFRVVTKGNFPLLVKENIDANMKTCFEAGMENFIFEVVTDKAINLPPNPRVREVVVPT 153
Query: 201 SYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHF 260
+Y+TKSGA FKARALQYCLED+VNIL +DW+VHLDEETLLT N+I G+LNF DGKH F
Sbjct: 154 AYRTKSGAKFKARALQYCLEDDVNILQPTDWIVHLDEETLLTTNAICGILNFCEDGKHQF 213
Query: 261 GQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKK 320
GQG+ITYAN ++VNW+TTL+DSFRVADDMGKLR QF LFHKPL WKGSYVVTQ++ +
Sbjct: 214 GQGVITYANGDIVNWLTTLSDSFRVADDMGKLRFQFKLFHKPLFGWKGSYVVTQVEAERD 273
Query: 321 RS 322
S
Sbjct: 274 VS 275
>sp|Q9UIL8|PHF11_HUMAN PHD finger protein 11 OS=Homo sapiens GN=PHF11 PE=1 SV=3
Length = 331
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 164 MARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDN- 222
+ +C EAGL NY++E + DK +P + + E Y+ ALF R ED
Sbjct: 221 LKKCKEAGLLNYLLEEILDKVHSIP-EKLMDETTSESDYEEIGSALFDCRL----FEDTF 275
Query: 223 VNILSGSDWVVHLDEE 238
VN + + +H ++
Sbjct: 276 VNFQAAIEKKIHASQQ 291
>sp|A6VU33|PNP_MARMS Polyribonucleotide nucleotidyltransferase OS=Marinomonas sp.
(strain MWYL1) GN=pnp PE=3 SV=1
Length = 702
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 187 LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSI 246
L IH E V K YK K L + A VNIL G D +VH+ + + E I
Sbjct: 610 LKIHEITAEAEVDKLYKGKVVRLAEFGAF-------VNILPGKDGLVHISQ---IAEERI 659
Query: 247 RGVLNFVLDGKH 258
R V +F+ +G+
Sbjct: 660 RAVTDFLSEGQE 671
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,141,409
Number of Sequences: 539616
Number of extensions: 5857153
Number of successful extensions: 15458
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15455
Number of HSP's gapped (non-prelim): 7
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)