Query psy11724
Match_columns 355
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 17:18:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13641 Glyco_tranf_2_3: Glyc 98.9 2.1E-09 4.6E-14 93.1 7.4 189 140-345 1-203 (228)
2 PF13632 Glyco_trans_2_3: Glyc 98.9 1.6E-09 3.5E-14 92.6 3.8 90 231-324 1-91 (193)
3 COG1215 Glycosyltransferases, 98.5 6.4E-06 1.4E-10 78.7 15.4 169 139-328 53-237 (439)
4 cd06421 CESA_CelA_like CESA_Ce 98.4 4.9E-06 1.1E-10 71.9 12.7 187 140-345 1-204 (234)
5 TIGR03111 glyc2_xrt_Gpos1 puta 98.4 9.9E-06 2.2E-10 80.5 14.9 170 139-327 48-237 (439)
6 PRK11204 N-glycosyltransferase 98.3 4.1E-05 8.8E-10 74.2 18.3 167 139-326 53-230 (420)
7 cd04192 GT_2_like_e Subfamily 98.3 6.4E-06 1.4E-10 70.5 11.3 162 145-324 2-174 (229)
8 cd06438 EpsO_like EpsO protein 98.2 9.3E-06 2E-10 69.4 10.1 169 146-327 3-176 (183)
9 cd06439 CESA_like_1 CESA_like_ 98.2 2.3E-05 5E-10 69.2 12.2 187 138-349 27-226 (251)
10 TIGR03469 HonB hopene-associat 98.2 6.2E-05 1.3E-09 73.4 15.8 181 136-324 36-228 (384)
11 PRK14583 hmsR N-glycosyltransf 98.2 0.00011 2.3E-09 73.1 16.9 167 139-326 74-251 (444)
12 TIGR03030 CelA cellulose synth 98.1 8.2E-05 1.8E-09 79.0 16.2 172 138-327 129-329 (713)
13 TIGR03472 HpnI hopanoid biosyn 98.1 8.1E-05 1.7E-09 72.3 14.6 192 139-346 40-247 (373)
14 cd06436 GlcNAc-1-P_transferase 98.0 8.4E-05 1.8E-09 64.6 12.2 162 146-321 3-178 (191)
15 cd06427 CESA_like_2 CESA_like_ 98.0 9E-05 1.9E-09 66.2 12.2 117 140-269 1-127 (241)
16 cd06435 CESA_NdvC_like NdvC_li 98.0 0.00011 2.4E-09 64.4 11.8 162 144-325 2-178 (236)
17 cd06423 CESA_like CESA_like is 97.9 6E-05 1.3E-09 59.5 7.4 162 146-326 3-175 (180)
18 PRK14716 bacteriophage N4 adso 97.8 0.00019 4.2E-09 74.2 12.1 174 139-327 65-260 (504)
19 PRK11498 bcsA cellulose syntha 97.8 0.00068 1.5E-08 74.4 16.5 170 140-327 260-440 (852)
20 cd02510 pp-GalNAc-T pp-GalNAc- 97.8 0.00021 4.6E-09 66.2 10.5 111 144-268 2-123 (299)
21 cd04179 DPM_DPG-synthase_like 97.8 0.00031 6.6E-09 58.6 10.3 151 151-322 7-167 (185)
22 PF00535 Glycos_transf_2: Glyc 97.7 0.00038 8.3E-09 55.3 10.2 157 144-322 2-169 (169)
23 cd02520 Glucosylceramide_synth 97.7 0.00043 9.4E-09 59.9 11.1 104 141-256 2-114 (196)
24 cd06434 GT2_HAS Hyaluronan syn 97.7 0.00015 3.2E-09 63.1 7.8 161 142-325 2-171 (235)
25 cd06437 CESA_CaSu_A2 Cellulose 97.7 0.00069 1.5E-08 59.7 11.5 170 141-326 2-183 (232)
26 PRK15489 nfrB bacteriophage N4 97.5 0.0027 6E-08 68.5 15.8 163 140-321 71-252 (703)
27 cd02525 Succinoglycan_BP_ExoA 97.5 0.002 4.4E-08 55.9 12.0 110 142-266 2-119 (249)
28 cd04186 GT_2_like_c Subfamily 97.4 0.0033 7.2E-08 50.7 11.4 94 145-255 2-101 (166)
29 PLN02726 dolichyl-phosphate be 97.4 0.0018 3.9E-08 58.2 10.7 163 140-322 9-182 (243)
30 cd06442 DPM1_like DPM1_like re 97.3 0.0019 4.1E-08 55.7 9.4 156 146-322 3-167 (224)
31 cd04184 GT2_RfbC_Mx_like Myxoc 97.3 0.0042 9.1E-08 52.7 11.2 99 140-254 1-109 (202)
32 cd06433 GT_2_WfgS_like WfgS an 97.2 0.0029 6.3E-08 52.5 9.2 105 146-266 4-114 (202)
33 cd04191 Glucan_BSP_ModH Glucan 97.1 0.0071 1.5E-07 56.9 12.1 128 144-280 3-146 (254)
34 PRK05454 glucosyltransferase M 97.1 0.033 7.2E-07 60.1 17.9 133 138-280 122-271 (691)
35 cd04185 GT_2_like_b Subfamily 97.0 0.011 2.5E-07 50.5 11.4 108 146-267 3-118 (202)
36 PRK11234 nfrB bacteriophage N4 97.0 0.022 4.8E-07 61.7 15.6 176 140-329 63-259 (727)
37 cd06420 GT2_Chondriotin_Pol_N 96.8 0.011 2.4E-07 49.3 9.5 95 146-254 3-105 (182)
38 cd04190 Chitin_synth_C C-termi 96.8 0.018 3.9E-07 52.3 11.5 148 154-324 11-167 (244)
39 cd02526 GT2_RfbF_like RfbF is 96.6 0.024 5.1E-07 49.5 10.4 91 146-250 3-97 (237)
40 cd04196 GT_2_like_d Subfamily 96.5 0.075 1.6E-06 45.1 12.3 94 145-254 3-105 (214)
41 cd02522 GT_2_like_a GT_2_like_ 96.3 0.066 1.4E-06 46.1 11.1 109 143-268 2-112 (221)
42 PF13506 Glyco_transf_21: Glyc 96.1 0.021 4.5E-07 50.8 7.5 119 192-325 2-121 (175)
43 cd04195 GT2_AmsE_like GT2_AmsE 96.1 0.069 1.5E-06 45.4 10.3 104 146-265 4-118 (201)
44 PRK10073 putative glycosyl tra 96.0 0.088 1.9E-06 51.0 11.4 103 140-260 6-117 (328)
45 cd00761 Glyco_tranf_GTA_type G 95.9 0.11 2.4E-06 39.9 9.8 98 146-258 3-108 (156)
46 cd04187 DPM1_like_bac Bacteria 95.9 0.3 6.5E-06 41.2 12.9 42 209-255 66-107 (181)
47 cd06913 beta3GnTL1_like Beta 1 95.6 0.42 9.1E-06 41.8 13.3 109 146-266 3-123 (219)
48 TIGR01556 rhamnosyltran L-rham 95.6 0.079 1.7E-06 48.6 8.9 87 154-256 8-101 (281)
49 cd04188 DPG_synthase DPG_synth 95.6 0.32 7E-06 42.3 12.3 104 153-267 9-121 (211)
50 PRK10018 putative glycosyl tra 94.9 0.35 7.5E-06 46.3 11.3 101 140-255 5-112 (279)
51 cd02511 Beta4Glucosyltransfera 94.6 0.22 4.8E-06 44.7 8.7 95 142-257 2-100 (229)
52 PTZ00260 dolichyl-phosphate be 93.5 3.6 7.7E-05 40.2 15.2 102 140-254 70-188 (333)
53 PF10111 Glyco_tranf_2_2: Glyc 93.4 1.1 2.3E-05 42.3 11.2 40 208-252 73-112 (281)
54 PRK13915 putative glucosyl-3-p 93.3 0.51 1.1E-05 45.6 9.0 114 140-263 31-152 (306)
55 PRK10714 undecaprenyl phosphat 93.0 2 4.4E-05 41.7 12.7 106 141-259 7-120 (325)
56 PRK10063 putative glycosyl tra 91.5 4 8.6E-05 38.0 12.2 99 141-252 2-106 (248)
57 PF13704 Glyco_tranf_2_4: Glyc 90.2 1.4 3E-05 34.5 6.8 72 164-244 11-87 (97)
58 COG0463 WcaA Glycosyltransfera 88.1 8.7 0.00019 29.3 9.7 92 140-248 3-102 (291)
59 PLN03180 reversibly glycosylat 82.8 3.6 7.7E-05 41.9 6.7 129 135-291 6-149 (346)
60 COG1216 Predicted glycosyltran 82.7 34 0.00073 32.5 12.9 130 208-345 70-213 (305)
61 PF02434 Fringe: Fringe-like; 80.8 1 2.2E-05 42.7 2.0 29 225-253 83-111 (252)
62 PF03214 RGP: Reversibly glyco 77.5 2.9 6.3E-05 42.5 4.1 108 165-291 26-147 (348)
63 COG2943 MdoH Membrane glycosyl 71.3 1.2E+02 0.0025 33.7 14.2 112 143-266 147-275 (736)
64 PLN03153 hypothetical protein; 65.6 7.5 0.00016 41.7 4.2 29 225-253 207-235 (537)
65 PF13712 Glyco_tranf_2_5: Glyc 60.8 1.2E+02 0.0026 28.1 10.7 130 208-343 39-189 (217)
66 KOG2246|consensus 55.6 14 0.00031 37.5 4.0 43 208-253 150-193 (364)
67 PF05212 DUF707: Protein of un 54.5 48 0.001 33.4 7.3 108 144-269 44-157 (294)
68 PLN02893 Cellulose synthase-li 54.0 57 0.0012 36.5 8.4 91 177-268 246-339 (734)
69 PLN03181 glycosyltransferase; 46.6 75 0.0016 33.8 7.5 68 154-245 148-215 (453)
70 KOG2387|consensus 34.7 1E+02 0.0022 33.4 6.3 31 192-223 363-393 (585)
71 COG0504 PyrG CTP synthase (UTP 32.7 31 0.00068 37.1 2.4 30 193-223 344-373 (533)
72 PF01501 Glyco_transf_8: Glyco 32.0 2.1E+02 0.0044 25.1 7.1 19 225-243 95-113 (250)
73 COG1369 POP5 RNase P/RNase MRP 31.4 1E+02 0.0022 27.5 5.0 72 141-220 18-115 (124)
74 cd04470 S1_EF-P_repeat_1 S1_EF 31.3 38 0.00082 25.9 2.1 33 225-258 9-45 (61)
75 cd04194 GT8_A4GalT_like A4GalT 30.7 1.1E+02 0.0023 28.0 5.3 19 225-243 92-110 (248)
76 KOG4179|consensus 30.4 42 0.00091 35.9 2.8 36 211-252 98-134 (568)
77 PRK06186 hypothetical protein; 28.8 1.1E+02 0.0024 29.5 5.1 30 192-222 53-82 (229)
78 PF01762 Galactosyl_T: Galacto 28.7 37 0.0008 30.2 1.9 37 213-253 69-105 (195)
79 PF09825 BPL_N: Biotin-protein 28.1 1.5E+02 0.0032 30.6 6.1 77 150-261 10-87 (367)
80 cd02515 Glyco_transf_6 Glycosy 27.5 5.4E+02 0.012 25.8 9.7 96 140-241 34-136 (271)
81 PF04666 Glyco_transf_54: N-Ac 27.4 3.9E+02 0.0084 26.7 8.8 113 137-256 49-197 (297)
82 PF03452 Anp1: Anp1; InterPro 26.6 69 0.0015 31.7 3.4 33 212-246 128-160 (269)
83 PF05637 Glyco_transf_34: gala 26.3 54 0.0012 31.0 2.6 72 154-247 24-95 (239)
84 PF02590 SPOUT_MTase: Predicte 26.0 2.8E+02 0.006 25.0 6.9 89 144-254 3-93 (155)
85 PF03314 DUF273: Protein of un 25.4 79 0.0017 30.7 3.5 38 216-255 27-67 (222)
86 PF05679 CHGN: Chondroitin N-a 24.1 8.7E+02 0.019 25.6 11.6 187 140-338 247-451 (499)
87 TIGR03061 pip_yhgE_Nterm YhgE/ 24.1 1.8E+02 0.0039 25.3 5.3 22 104-125 16-37 (164)
88 PF13656 RNA_pol_L_2: RNA poly 22.8 2E+02 0.0044 22.9 4.9 34 136-169 37-72 (77)
89 PRK00317 mobA molybdopterin-gu 20.9 5.6E+02 0.012 22.3 9.0 104 213-336 78-191 (193)
No 1
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.94 E-value=2.1e-09 Score=93.11 Aligned_cols=189 Identities=20% Similarity=0.192 Sum_probs=102.5
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C-C-------CCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L-P-------IHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L-~-------~~~~vrviVVP~eY~tk~GA~~ 210 (355)
|.|-+.|++.+. ++.+++.+.+...+ .+ .+++|.||.|.... . + ..+..++.+++.. ...|...
T Consensus 1 P~v~Vvip~~~~-~~~l~~~l~sl~~~---~~-~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~--~~~g~~~ 73 (228)
T PF13641_consen 1 PRVSVVIPAYNE-DDVLRRCLESLLAQ---DY-PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP--RNPGPGG 73 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTS---HH-HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE------HHHHH
T ss_pred CEEEEEEEecCC-HHHHHHHHHHHHcC---CC-CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC--CCCCcch
Confidence 456665666665 34677777655431 12 56888888864422 1 1 3444555666664 1235678
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchh
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMG 290 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~ 290 (355)
|++|++++.+. .+.+||++||+|++++++.+...+++.++.+..+-+|.+.+.+ ..++++.+.+. +...+..
T Consensus 74 k~~a~n~~~~~-----~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~-~~~~~~~ 145 (228)
T PF13641_consen 74 KARALNEALAA-----ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDN--DRNWLTRLQDL-FFARWHL 145 (228)
T ss_dssp HHHHHHHHHHH--------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETT--CCCEEEE-TT---S-EETT
T ss_pred HHHHHHHHHHh-----cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecC--CCCHHHHHHHH-HHhhhhh
Confidence 99999999984 2489999999999999999999999997666666667776653 45666666654 3333333
Q ss_pred hHHHhhhccCcceeeecCceEEEeccccccc-cccc----chhhhhhhhcCCCCCeeeec
Q psy11724 291 KLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKSV----QKRSKYRQAQQPSQPIVLHP 345 (355)
Q Consensus 291 r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD~----~~~~~~~~~~~~~~~~~~~~ 345 (355)
.++.....++ ....+|+.+++|.++.+++ +||- ++..-.+.+.+-.-+++..|
T Consensus 146 ~~~~~~~~~~--~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 146 RFRSGRRALG--VAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp TS-TT-B------S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred hhhhhhcccc--eeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHHHHHCCCcEEEEC
Confidence 3343333333 3446799999999999999 8886 33333344444444444433
No 2
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=98.86 E-value=1.6e-09 Score=92.60 Aligned_cols=90 Identities=26% Similarity=0.262 Sum_probs=78.4
Q ss_pred eEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchhhHHHhhhccCcceeeecCce
Q psy11724 231 WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSY 310 (355)
Q Consensus 231 WVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~rfq~~~~~rPlfG~HGs~ 310 (355)
||+++|+||.+++|++..+.++.++.+.+++||.+.+.+ ..++++.+++... ..+..+.+.+...+++|.. +||+.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~G~~ 76 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEY-AISHGLSRLSQSSLGRPLF-LSGSG 76 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhh-hhhhhhhHHHHHhcCCCcc-ccCcc
Confidence 899999999999999999999999778899999999753 4678777776654 6777777878788888888 88999
Q ss_pred EEEeccccccc-ccc
Q psy11724 311 VVTQLKTSKKR-SKS 324 (355)
Q Consensus 311 LvVrg~vE~~V-gWD 324 (355)
.++|.+++++| +||
T Consensus 77 ~~~r~~~l~~vg~~~ 91 (193)
T PF13632_consen 77 MLFRREALREVGGFD 91 (193)
T ss_pred eeeeHHHHHHhCccc
Confidence 99999999999 999
No 3
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=6.4e-06 Score=78.72 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=108.9
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C--------CCC-CCceEEEecCCCccCccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L--------PIH-RRIREVVVPKSYKTKSGA 208 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L--------~~~-~~vrviVVP~eY~tk~GA 208 (355)
.|.|.+.|++++-.++.+.+++.+..+ ..-.+++|.||.|.+.+ . ... +.++++ +| +...
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~----~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~-~~-----~~~~ 122 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS----QDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVI-YP-----EKKN 122 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh----CCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEE-ec-----cccC
Confidence 389999899999988888888865433 33345779999984432 1 111 345555 33 2347
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCc--ch--hhhhhhhhceee
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANE--EV--VNWVTTLADSFR 284 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~--~~--~nwlttlaD~iR 284 (355)
.+|++|++++.+. . .+|+|+++|-||.+..|+++.....-++.+.. ++..-++. .. .++++.....-=
T Consensus 123 ~gK~~al~~~l~~----~-~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~~~~ 194 (439)
T COG1215 123 GGKAGALNNGLKR----A-KGDVVVILDADTVPEPDALRELVSPFEDPPVG---AVVGTPRIRNRPDPSNLLGRIQAIEY 194 (439)
T ss_pred ccchHHHHHHHhh----c-CCCEEEEEcCCCCCChhHHHHHHhhhcCCCee---EEeCCceeeecCChhhhcchhcchhh
Confidence 8999999999983 3 39999999999999999999999888754433 33322210 11 344433322221
Q ss_pred cccchhhHHHhhhc-cCcceeeecCceEEEecccccccc-cccchh
Q psy11724 285 VADDMGKLRLQFSL-FHKPLLSWKGSYVVTQLKTSKKRS-KSVQKR 328 (355)
Q Consensus 285 v~DDm~r~rfq~~~-~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~~~ 328 (355)
-.. ..++.+... .+.+.+ ..|+.-+.|-++.+++| |+..+.
T Consensus 195 ~~~--~~~~~~~~~~~g~~~~-~~G~~~~~rr~aL~~~g~~~~~~i 237 (439)
T COG1215 195 LSA--FYFRLRAASKGGLISF-LSGSSSAFRRSALEEVGGWLEDTI 237 (439)
T ss_pred hhh--HHHhhhhhhhcCCeEE-EcceeeeEEHHHHHHhCCCCCCce
Confidence 111 111222222 233444 67999999999999999 887766
No 4
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.42 E-value=4.9e-06 Score=71.87 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=106.2
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCccc--EEEEEEecCCCC--------CCCCCCceEEEecCCCccCcccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLEN--YIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~n--f~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~ 209 (355)
|.|.+.|+|....++.+++++.+... ....+ |++.||.|...+ +.....++++..+. +..
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~----q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~------~~~ 70 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA----IDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPD------NRH 70 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh----cCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCC------CCC
Confidence 35777789998777788888876533 22233 888888664422 11111223333322 245
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc-CCcccceeEEecCCcchhhhhhhhhceeecccc
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD-GKHHFGQGLITYANEEVVNWVTTLADSFRVADD 288 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~-g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DD 288 (355)
+|+++++.+.+. ..++||++||+|+.++++.+..+++.+++ .+..+.+|...+.+.....|+....... ...
T Consensus 71 ~~~~~~n~~~~~-----a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~ 143 (234)
T cd06421 71 AKAGNLNNALAH-----TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNE--QEL 143 (234)
T ss_pred CcHHHHHHHHHh-----CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHH--HHH
Confidence 788999999984 27899999999999999999999999986 3333555555443322221221111100 000
Q ss_pred -hhhHHHhhhccCcceeeecCceEEEecccccccc-ccc----chhhhhhhhcCCCCCeeeec
Q psy11724 289 -MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSV----QKRSKYRQAQQPSQPIVLHP 345 (355)
Q Consensus 289 -m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~----~~~~~~~~~~~~~~~~~~~~ 345 (355)
+......... ......+|+.+++|.++-+++| +|- ++..-..++.+....|+..|
T Consensus 144 ~~~~~~~~~~~--~~~~~~~g~~~~~r~~~~~~ig~~~~~~~~eD~~l~~r~~~~g~~i~~~~ 204 (234)
T cd06421 144 FYGVIQPGRDR--WGAAFCCGSGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred HHHHHHHHHhh--cCCceecCceeeEeHHHHHHhCCCCccceeccHHHHHHHHHcCceEEEec
Confidence 0111111111 1233457888999999888887 552 23333344444444444433
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.36 E-value=9.9e-06 Score=80.52 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=99.8
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------C-CCCCCceEEEecCCCccCcccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------L-PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L-~~~~~vrviVVP~eY~tk~GA~ 209 (355)
.|.|.+.|++.... +.+++.+.+..+ . +-.-.+++|.||.|..-+ + ...+.++++..+++ .
T Consensus 48 ~P~vsVIIP~yNe~-~~l~~~l~sl~~-q-~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~-------~ 117 (439)
T TIGR03111 48 LPDITIIIPVYNSE-DTLFNCIESIYN-Q-TYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSD-------Q 117 (439)
T ss_pred CCCEEEEEEeCCCh-HHHHHHHHHHHh-c-CCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCC-------C
Confidence 47788878888754 567777765422 1 112224567777653311 1 12345666555532 5
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh-cCCcccceeEEecCCcc---hhhhhhhhhceeec
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL-DGKHHFGQGLITYANEE---VVNWVTTLADSFRV 285 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~-~g~~~~GQGiI~Y~n~~---~~nwlttlaD~iRv 285 (355)
+||+||+++.+. ..++||+++|.|+.+++|.+..+++..+ +.+..+..|.+....+. ..++...+ +|-
T Consensus 118 Gka~AlN~gl~~-----s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~---~~~ 189 (439)
T TIGR03111 118 GKAKALNAAIYN-----SIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKL---IRR 189 (439)
T ss_pred CHHHHHHHHHHH-----ccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhH---hHH
Confidence 799999999983 4578999999999999999999998876 34445567776543221 11111111 110
Q ss_pred ccchhhHH------HhhhccCcceeeecCceEEEeccccccc-ccccch
Q psy11724 286 ADDMGKLR------LQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKSVQK 327 (355)
Q Consensus 286 ~DDm~r~r------fq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD~~~ 327 (355)
..-+...+ ..... ...++..+|+..+.|-++-+++ |||..+
T Consensus 190 ~~~~~y~~~~l~~r~~~s~-~~~~~~~sGa~~~~Rr~~l~~vggf~~~~ 237 (439)
T TIGR03111 190 CEYFEYAQAFLAGRNFESQ-VNSLFTLSGAFSAFRRETILKTQLYNSET 237 (439)
T ss_pred hHHHHHHHHHHhhhHHHHh-cCCeEEEccHHHhhhHHHHHHhCCCCCCC
Confidence 00011001 01111 1245668899888888876666 587544
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.34 E-value=4.1e-05 Score=74.22 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=99.6
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC---------CCCCCceEEEecCCCccCcccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL---------PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L---------~~~~~vrviVVP~eY~tk~GA~ 209 (355)
.|.|.+.|++... .+.+++++.+..+ ..-.+++|.||.|...+= ..+++ +.++..+ + -.
T Consensus 53 ~p~vsViIp~yne-~~~i~~~l~sl~~----q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~--v~~i~~~---~--n~ 120 (420)
T PRK11204 53 YPGVSILVPCYNE-GENVEETISHLLA----LRYPNYEVIAINDGSSDNTGEILDRLAAQIPR--LRVIHLA---E--NQ 120 (420)
T ss_pred CCCEEEEEecCCC-HHHHHHHHHHHHh----CCCCCeEEEEEECCCCccHHHHHHHHHHhCCc--EEEEEcC---C--CC
Confidence 4678887887765 3567777765433 223478898888754321 12233 3444422 2 24
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc-CCcccceeEEecCCcchhhhhhhhhceeecccc
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD-GKHHFGQGLITYANEEVVNWVTTLADSFRVADD 288 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~-g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DD 288 (355)
+|+.|++.+.+. ...|+++.+|.|+.+++|++...++..++ .+..+-||.....+ ..+++..+... ....-
T Consensus 121 Gka~aln~g~~~-----a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~--~~~~~~~~~~~-~~~~~ 192 (420)
T PRK11204 121 GKANALNTGAAA-----ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRN--RSTLLGRIQVG-EFSSI 192 (420)
T ss_pred CHHHHHHHHHHH-----cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceecc--chhHHHHHHHH-HHHHh
Confidence 699999999984 46799999999999999999999998853 33334444433332 12333222110 00111
Q ss_pred hhhHHHhhhccCcceeeecCceEEEecccccccc-cccc
Q psy11724 289 MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQ 326 (355)
Q Consensus 289 m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~ 326 (355)
.+..+...+.++++ +...|...+.|-++-+++| ||-.
T Consensus 193 ~~~~~~~~~~~~~~-~~~~G~~~~~rr~~l~~vgg~~~~ 230 (420)
T PRK11204 193 IGLIKRAQRVYGRV-FTVSGVITAFRKSALHEVGYWSTD 230 (420)
T ss_pred hhHHHHHHHHhCCc-eEecceeeeeeHHHHHHhCCCCCC
Confidence 11122223344443 4467888999998887874 6644
No 7
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.34 E-value=6.4e-06 Score=70.53 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=98.4
Q ss_pred EEEecCchHHHHHHHHHHhHHHhhhcCccc--EEEEEEecCCCC-----C---CCCCCceEEEecCCCccCccccchhhh
Q psy11724 145 RIVTRGDYAQLVKDNVARNMARCNEAGLEN--YIIEVVTDKPVG-----L---PIHRRIREVVVPKSYKTKSGALFKARA 214 (355)
Q Consensus 145 rVVTrGd~p~lVr~sV~~~~~~~~~~gL~n--f~V~VVtDk~i~-----L---~~~~~vrviVVP~eY~tk~GA~~KARA 214 (355)
.|+|.+. ++.+++.+.+...+ -..+ ++|.||-|...+ + ...+..++.+++.+= .+..+|+.|
T Consensus 2 iip~~n~-~~~l~~~l~sl~~q----~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~---~~~~g~~~a 73 (229)
T cd04192 2 VIAARNE-AENLPRLLQSLSAL----DYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR---VSISGKKNA 73 (229)
T ss_pred EEEecCc-HHHHHHHHHHHHhC----CCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC---cccchhHHH
Confidence 3677775 56688887754332 1223 788888775422 1 122234455555441 236789999
Q ss_pred hhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchhhHHH
Q psy11724 215 LQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRL 294 (355)
Q Consensus 215 LqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~rf 294 (355)
++++.+. ...|||+++|.|+.+.++.+..+++..++.+..+..|-..+. ...++++..++.-.... .+. ..
T Consensus 74 ~n~g~~~-----~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~ 144 (229)
T cd04192 74 LTTAIKA-----AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF--KGKSLLAKFQRLDWLSL-LGL-IA 144 (229)
T ss_pred HHHHHHH-----hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec--CCccHHHHHHHHHHHHH-HHH-Hh
Confidence 9999973 457999999999999999999999987765555555555443 12345444443211111 111 11
Q ss_pred hhhccCcceeeecCceEEEeccccccc-ccc
Q psy11724 295 QFSLFHKPLLSWKGSYVVTQLKTSKKR-SKS 324 (355)
Q Consensus 295 q~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD 324 (355)
.....+.|.++ +|+.+++|-++-+++ |||
T Consensus 145 ~~~~~~~~~~~-~g~~~~~rr~~~~~~ggf~ 174 (229)
T cd04192 145 GSFGLGKPFMC-NGANMAYRKEAFFEVGGFE 174 (229)
T ss_pred hHHHhcCcccc-ccceEEEEHHHHHHhcCCc
Confidence 22334556554 577788888876666 476
No 8
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=98.24 E-value=9.3e-06 Score=69.36 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=100.1
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----CCCCCCceEEEecCCCccCccccchhhhhhHHHHh
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----LPIHRRIREVVVPKSYKTKSGALFKARALQYCLED 221 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~ 221 (355)
|++... .+.+++.+.+..++. ....+++|.||.|..-+ +.......+++.+.. . ..+|++|++++.+.
T Consensus 3 Ip~~ne-~~~i~~~l~sl~~~~--~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~---~--~~gk~~aln~g~~~ 74 (183)
T cd06438 3 IPAHNE-EAVIGNTVRSLKAQD--YPRELYRIFVVADNCTDDTAQVARAAGATVLERHDP---E--RRGKGYALDFGFRH 74 (183)
T ss_pred Eeccch-HHHHHHHHHHHHhcC--CCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCC---C--CCCHHHHHHHHHHH
Confidence 444443 356777776443221 12246778888775533 111112334333321 2 46799999999884
Q ss_pred cccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhce-eecccchhhHHHhhhccC
Q psy11724 222 NVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS-FRVADDMGKLRLQFSLFH 300 (355)
Q Consensus 222 ~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~-iRv~DDm~r~rfq~~~~~ 300 (355)
-.+...+.+|++++|.|+.+.++.+...++...++ .++.||-..+.+ ...+|++.+... .+...-+. +.....++
T Consensus 75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~-~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 150 (183)
T cd06438 75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAAG-ARVVQAYYNSKN-PDDSWITRLYAFAFLVFNRLR--PLGRSNLG 150 (183)
T ss_pred HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC-CCeeEEEEeeeC-CccCHHHHHHHHHHHHHHHHH--HHHHHHcC
Confidence 21124579999999999999999999999988764 467777655433 123676555422 11111111 11222345
Q ss_pred cceeeecCceEEEecccccccccccch
Q psy11724 301 KPLLSWKGSYVVTQLKTSKKRSKSVQK 327 (355)
Q Consensus 301 rPlfG~HGs~LvVrg~vE~~VgWD~~~ 327 (355)
.+.+ ..|+.++.|-++.++.||+-.+
T Consensus 151 ~~~~-~~G~~~~~rr~~l~~~g~~~~~ 176 (183)
T cd06438 151 LSCQ-LGGTGMCFPWAVLRQAPWAAHS 176 (183)
T ss_pred CCee-ecCchhhhHHHHHHhCCCCCCC
Confidence 4444 4688889999977779998654
No 9
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.21 E-value=2.3e-05 Score=69.20 Aligned_cols=187 Identities=14% Similarity=0.067 Sum_probs=107.9
Q ss_pred CCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC-----CCCCCceEEEecCCCccCccccchh
Q psy11724 138 LAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL-----PIHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 138 la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L-----~~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
-.+.+.+.|+|.+.. +.+.+.+.+...+ ...-..+++.||.|...+- .....-++.++..+ + ..+|+
T Consensus 27 ~~~~isVvip~~n~~-~~l~~~l~si~~q--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~---~--~~g~~ 98 (251)
T cd06439 27 YLPTVTIIIPAYNEE-AVIEAKLENLLAL--DYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP---E--RRGKA 98 (251)
T ss_pred CCCEEEEEEecCCcH-HHHHHHHHHHHhC--cCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC---C--CCChH
Confidence 446788888998864 4466666554331 1111237788887755431 11111034445443 3 36789
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcch----hhhhhhhhceeecccc
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEV----VNWVTTLADSFRVADD 288 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~----~nwlttlaD~iRv~DD 288 (355)
+|++.+.+. + .+|||++||.|+.++++.+..+++..++.+..+-+|-+.+.+... ......+.
T Consensus 99 ~a~n~gi~~----a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------- 165 (251)
T cd06439 99 AALNRALAL----A-TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYE-------- 165 (251)
T ss_pred HHHHHHHHH----c-CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHH--------
Confidence 999999984 2 359999999999999999999999998666667777777653221 11111110
Q ss_pred hhhHHHhhhccCcceeeecCceEEEecccccccccccc----hhhhhhhhcCCCCCeeeeccccc
Q psy11724 289 MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRSKSVQ----KRSKYRQAQQPSQPIVLHPCHIC 349 (355)
Q Consensus 289 m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~VgWD~~----~~~~~~~~~~~~~~~~~~~~~~~ 349 (355)
...+-.....+. ..+.+|..+++|-++.+ +|+.. +..-..++.+-...++..|+-.|
T Consensus 166 -~~~~~~~~~~~~-~~~~~g~~~~~rr~~~~--~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~ 226 (251)
T cd06439 166 -NWLKRAESRLGS-TVGANGAIYAIRRELFR--PLPADTINDDFVLPLRIARQGYRVVYEPDAVA 226 (251)
T ss_pred -HHHHHHHHhcCC-eeeecchHHHhHHHHhc--CCCcccchhHHHHHHHHHHcCCeEEeccccEE
Confidence 001111112233 34567888878777666 33322 21223445555566777665543
No 10
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.19 E-value=6.2e-05 Score=73.45 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=99.3
Q ss_pred CCCCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------C-CCCC-CceEEEecCCCccC
Q psy11724 136 PLLAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------L-PIHR-RIREVVVPKSYKTK 205 (355)
Q Consensus 136 p~la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L-~~~~-~vrviVVP~eY~tk 205 (355)
|...|.|.+.|++++.. +.+.+.+.+..++ ..-.+++|.||-|...+ + ..++ ..++.++..+=. +
T Consensus 36 ~~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q---~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~-~ 110 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEA-DVIGECVTSLLEQ---DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPL-P 110 (384)
T ss_pred CCCCCCEEEEEecCCcH-hHHHHHHHHHHhC---CCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCC-C
Confidence 33567899989999875 4456666544221 11125788888775432 1 1112 113444543211 2
Q ss_pred ccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchh-hhhhhhhceee
Q psy11724 206 SGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVV-NWVTTLADSFR 284 (355)
Q Consensus 206 ~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~-nwlttlaD~iR 284 (355)
.|-.+|+.|++.+.+.-.....++||++++|.|+.++++.+...++..++.+..+..|...+..+... ..+......+
T Consensus 111 ~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~- 189 (384)
T TIGR03469 111 PGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFF- 189 (384)
T ss_pred CCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHH-
Confidence 35678999999988852222234899999999999999999999999886554444444333322111 1110000000
Q ss_pred cccchhhHHHhhhccCcceeeecCceEEEeccccccc-ccc
Q psy11724 285 VADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKS 324 (355)
Q Consensus 285 v~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD 324 (355)
...+-.++..... .+...+..|..+++|-++-+++ |||
T Consensus 190 -~~~~~~~~~~~~~-~~~~~~~~G~~~lirr~~~~~vGGf~ 228 (384)
T TIGR03469 190 -FQKLYPFRWVNDP-RRRTAAAAGGCILIRREALERIGGIA 228 (384)
T ss_pred -HHHhcchhhhcCC-CccceeecceEEEEEHHHHHHcCCHH
Confidence 0000000100011 1123345688899999987777 565
No 11
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.15 E-value=0.00011 Score=73.08 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC---------CCCCCceEEEecCCCccCcccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL---------PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L---------~~~~~vrviVVP~eY~tk~GA~ 209 (355)
.|.|.+.|++.... ..+++++.+..+ ..-++++|.||.|...+= ..++++++ ++.+ + -+
T Consensus 74 ~p~vsViIP~yNE~-~~i~~~l~sll~----q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~v--v~~~---~--n~ 141 (444)
T PRK14583 74 HPLVSILVPCFNEG-LNARETIHAALA----QTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRV--IHLA---H--NQ 141 (444)
T ss_pred CCcEEEEEEeCCCH-HHHHHHHHHHHc----CCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEE--EEeC---C--CC
Confidence 36788878888754 346677765433 233478898888754321 12334444 4432 2 35
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC-CcccceeEEecCCcchhhhhhhhhceeecccc
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG-KHHFGQGLITYANEEVVNWVTTLADSFRVADD 288 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g-~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DD 288 (355)
+|+.|++++.+. .++|+++.+|.|+.+++|++...++..++. +...-||...+.+. .++++.+.. .....-
T Consensus 142 Gka~AlN~gl~~-----a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~--~~~~~~~~~-~e~~~~ 213 (444)
T PRK14583 142 GKAIALRMGAAA-----ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTR--STLIGRVQV-GEFSSI 213 (444)
T ss_pred CHHHHHHHHHHh-----CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCC--CcchhhHHH-HHHHHH
Confidence 799999999974 468999999999999999999998876533 33333444333221 233222110 000000
Q ss_pred hhhHHHhhhccCcceeeecCceEEEecccccccc-cccc
Q psy11724 289 MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQ 326 (355)
Q Consensus 289 m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~ 326 (355)
++..+-..+.++ +.+...|...+.|.++-+++| ||-.
T Consensus 214 ~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~vGg~~~~ 251 (444)
T PRK14583 214 IGLIKRTQRVYG-QVFTVSGVVAAFRRRALADVGYWSPD 251 (444)
T ss_pred HHHHHHHHHHhC-CceEecCceeEEEHHHHHHcCCCCCC
Confidence 111111112333 455678888899999888887 8754
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=98.11 E-value=8.2e-05 Score=79.03 Aligned_cols=172 Identities=12% Similarity=0.172 Sum_probs=100.4
Q ss_pred CCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----------------------CCCCCCceE
Q psy11724 138 LAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----------------------LPIHRRIRE 195 (355)
Q Consensus 138 la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----------------------L~~~~~vrv 195 (355)
-.|.|-+.|+|....++.+++++..... .+-.-++++|.||.|...+ +....+++.
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~--~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~y 206 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKN--MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNY 206 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHh--CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEE
Confidence 3478988899998877888888865422 1122347889999876311 001113444
Q ss_pred EEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh-cCCcccceeEEecCCc-chh
Q psy11724 196 VVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL-DGKHHFGQGLITYANE-EVV 273 (355)
Q Consensus 196 iVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~-~g~~~~GQGiI~Y~n~-~~~ 273 (355)
+.-|+ +..+||+||+++.+. .++|||+.+|.|+.+++|++...+.+.+ +.+-.+-|+.-.|.|. ...
T Consensus 207 i~r~~------n~~~KAgnLN~al~~-----a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~ 275 (713)
T TIGR03030 207 ITRPR------NVHAKAGNINNALKH-----TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIE 275 (713)
T ss_pred EECCC------CCCCChHHHHHHHHh-----cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHh
Confidence 43332 246899999999984 4579999999999999999999888875 4343344554333221 111
Q ss_pred hhhhhhhceeecccc----hhhHHHhhhccCcceeeecCceEEEecccccccc-cccch
Q psy11724 274 NWVTTLADSFRVADD----MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQK 327 (355)
Q Consensus 274 nwlttlaD~iRv~DD----m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~~ 327 (355)
..+.. .+ |..+. ++..+-.....+.+. ..|+..++|-++-++|| ||.++
T Consensus 276 ~nl~~-~~--~~~~e~~~f~~~i~~g~~~~~~~~--~~Gs~~~iRR~al~~iGGf~~~~ 329 (713)
T TIGR03030 276 RNLGT-FR--RMPNENELFYGLIQDGNDFWNAAF--FCGSAAVLRREALDEIGGIAGET 329 (713)
T ss_pred hhhHH-HH--HhhhHHHHHHHHHHHHHhhhCCee--ecCceeEEEHHHHHHcCCCCCCC
Confidence 11111 01 01111 011111112223333 35888999999877774 76443
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=98.10 E-value=8.1e-05 Score=72.25 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=109.2
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC---------CCCCCceEEEecCCCccCcccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL---------PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L---------~~~~~vrviVVP~eY~tk~GA~ 209 (355)
.|.|.+.+++++..+. +++++.+... .--.+|+|.|+.|...+- ..+++.++.++... ...|..
T Consensus 40 ~p~VSViiP~~nee~~-l~~~L~Sl~~----q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~--~~~G~~ 112 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPE-LYENLASFCR----QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA--RRHGPN 112 (373)
T ss_pred CCCeEEEEECCCCChh-HHHHHHHHHh----cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC--CCCCCC
Confidence 5779888999988654 5677765433 122357787776654331 12344444333221 133666
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccch
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDM 289 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm 289 (355)
.|..|+..+.+. ..+||++++|.|+.+.++.+..++...++.+..+-+|..... +..++...+.... ....+
T Consensus 113 ~K~~~l~~~~~~-----a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~--~~~~~~~~l~~~~-~~~~~ 184 (373)
T TIGR03472 113 RKVSNLINMLPH-----ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGR--PVPGFWSRLGAMG-INHNF 184 (373)
T ss_pred hHHHHHHHHHHh-----ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCC--CCCCHHHHHHHHH-hhhhh
Confidence 788898877652 469999999999999999999999888755544444532211 1223333222211 01111
Q ss_pred hhHHHhhhccCcceeeecCceEEEeccccccc-cccc------chhhhhhhhcCCCCCeeeecc
Q psy11724 290 GKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKSV------QKRSKYRQAQQPSQPIVLHPC 346 (355)
Q Consensus 290 ~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD~------~~~~~~~~~~~~~~~~~~~~~ 346 (355)
-.-.+....++.+.+ .+|..+++|-++-+++ |||- ++..-.+...+....+++.|+
T Consensus 185 ~~~~~~~~~~~~~~~-~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 185 LPSVMVARALGRARF-CFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hHHHHHHHhccCCcc-ccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecch
Confidence 111111233455555 4688888888876666 5662 333334455555555555554
No 14
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=98.05 E-value=8.4e-05 Score=64.59 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=94.9
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CC-CCCCceEEEecCCCccCccccchhhhhhHHH
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LP-IHRRIREVVVPKSYKTKSGALFKARALQYCL 219 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~-~~~~vrviVVP~eY~tk~GA~~KARALqYa~ 219 (355)
|+|... .+.+++.+.+... .. .+++|.||.|...+ +. .....++.++-.....+ -++|+.|++++.
T Consensus 3 Ip~~Ne-~~~l~~~l~sl~~----~~-~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~--~~Gk~~aln~g~ 74 (191)
T cd06436 3 VPCLNE-EAVIQRTLASLLR----NK-PNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNA--RTGKGDALNAAY 74 (191)
T ss_pred Eecccc-HHHHHHHHHHHHh----CC-CCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcC--CCCHHHHHHHHH
Confidence 455544 3456666654433 22 56788888774432 11 11112333332221112 357999999999
Q ss_pred Hhcc------cccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhcee-eccc-chhh
Q psy11724 220 EDNV------NILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSF-RVAD-DMGK 291 (355)
Q Consensus 220 e~~v------n~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~i-Rv~D-Dm~r 291 (355)
+.-. ++..+++||+++|.|+.++++.+..+..+.++.+-.+.||-+.+-| ...+|++.+.+.- .... -+..
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~ 153 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYN-RHKNLLTILQDLEFFIIIAATQS 153 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEec-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 8411 1222468999999999999999999888877655556677665544 2356766555422 1111 1121
Q ss_pred HHHhhhccCcceeeecCceEEEeccccccc
Q psy11724 292 LRLQFSLFHKPLLSWKGSYVVTQLKTSKKR 321 (355)
Q Consensus 292 ~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V 321 (355)
.| ..++. +..-|...+.|.++.++|
T Consensus 154 ~~---~~~~~--~~~~G~~~~~r~~~l~~v 178 (191)
T cd06436 154 LR---ALTGT--VGLGGNGQFMRLSALDGL 178 (191)
T ss_pred HH---HhcCc--EEECCeeEEEeHHHHHHh
Confidence 12 22332 346689999999999999
No 15
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.02 E-value=9e-05 Score=66.15 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=76.9
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccch
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFK 211 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~K 211 (355)
|.|.|.|++... ++.+.+.+.+...+ ...-.+++|.||.|...+ +......+++++|.. +.++|
T Consensus 1 p~vsIiIp~~Ne-~~~l~~~l~sl~~~--~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~-----~~~G~ 72 (241)
T cd06427 1 PVYTILVPLYKE-AEVLPQLIASLSAL--DYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPS-----QPRTK 72 (241)
T ss_pred CeEEEEEecCCc-HHHHHHHHHHHHhC--cCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCC-----CCCch
Confidence 356676677655 46677777654331 112235677777664322 111124566666653 24689
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC--CcccceeEEecCC
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG--KHHFGQGLITYAN 269 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g--~~~~GQGiI~Y~n 269 (355)
+.|++++.+. ..+|||+++|.|+.+.++.+..++++.+++ +..+++|-+.+.+
T Consensus 73 ~~a~n~g~~~-----a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (241)
T cd06427 73 PKACNYALAF-----ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYN 127 (241)
T ss_pred HHHHHHHHHh-----cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeC
Confidence 9999999984 457999999999999999999999988744 3335577766543
No 16
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.98 E-value=0.00011 Score=64.36 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=91.6
Q ss_pred EEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--C-----C----CCCCceEEEecCCCccCccccchh
Q psy11724 144 IRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--L-----P----IHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 144 irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--L-----~----~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
|.|+|....++.+++++.+... ....++++.||.|..-+ + . ...+++++...+ ..| +|+
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~----q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~----~~G--~~~ 71 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAA----LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEP----LPG--AKA 71 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHh----CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCC----CCC--Cch
Confidence 4467877767788888865432 22346778777764321 1 0 112344332221 123 478
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchhhH
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKL 292 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~ 292 (355)
.|++++.+. ...+.|||++||.|+.++++.+..++++.++.+..+-+|...|.+.. .+++.... ..+...+
T Consensus 72 ~a~n~g~~~---a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-----~~~~~~~ 142 (236)
T cd06435 72 GALNYALER---TAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-----YAEYKGF 142 (236)
T ss_pred HHHHHHHHh---cCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-----hHHHHHH
Confidence 999999984 22347999999999999999999999988753332223333333211 12221110 0011100
Q ss_pred HHhhhcc---CcceeeecCceEEEecccccccc-ccc
Q psy11724 293 RLQFSLF---HKPLLSWKGSYVVTQLKTSKKRS-KSV 325 (355)
Q Consensus 293 rfq~~~~---~rPlfG~HGs~LvVrg~vE~~Vg-WD~ 325 (355)
+..... .......+|+.+++|.++-+++| ||-
T Consensus 143 -~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~ 178 (236)
T cd06435 143 -FDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDE 178 (236)
T ss_pred -HHHHhccccccCceEEecceEEEEHHHHHHhCCCCC
Confidence 000000 00122358999999999999987 874
No 17
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=97.87 E-value=6e-05 Score=59.51 Aligned_cols=162 Identities=19% Similarity=0.127 Sum_probs=89.6
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCC---------CCCCceEEEecCCCccCccccchhhhhh
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLP---------IHRRIREVVVPKSYKTKSGALFKARALQ 216 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~---------~~~~vrviVVP~eY~tk~GA~~KARALq 216 (355)
|+|.... +.+++.+.+..++ ...++++.||.|....-. ..+ ...+++..+ + ..+|++|++
T Consensus 3 ip~~n~~-~~l~~~l~sl~~q----~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~---~--~~g~~~~~n 71 (180)
T cd06423 3 VPAYNEE-AVIERTIESLLAL----DYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDK---E--NGGKAGALN 71 (180)
T ss_pred ecccChH-HHHHHHHHHHHhC----CCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEec---c--cCCchHHHH
Confidence 5555543 6677777655442 225788888877654311 100 112223222 2 477899999
Q ss_pred HHHHhcccccCCCceEEEecCCcccCchhhhhhhhhh-hcCCcccceeEEecCCcchhhhhhhhhceeecccchhhHHHh
Q psy11724 217 YCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFV-LDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQ 295 (355)
Q Consensus 217 Ya~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi-~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~rfq 295 (355)
.+.+. ..++|+++||+|+.+.++.+..++... ++.+..+-.|........ .+|+............... ...
T Consensus 72 ~~~~~-----~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 144 (180)
T cd06423 72 AGLRH-----AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGS-ENLLTRLQAIEYLSIFRLG-RRA 144 (180)
T ss_pred HHHHh-----cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCc-Ccceeccchheecceeeee-eeh
Confidence 99984 278999999999999999999884444 443333333333332211 1333222221111111110 111
Q ss_pred hhccCcceeeecCceEEEecccccccc-cccc
Q psy11724 296 FSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQ 326 (355)
Q Consensus 296 ~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~ 326 (355)
......+ ...+|+..++|.++-+++| ||-.
T Consensus 145 ~~~~~~~-~~~~g~~~~~~~~~~~~~ggf~~~ 175 (180)
T cd06423 145 QSALGGV-LVLSGAFGAFRREALREVGGWDED 175 (180)
T ss_pred hheecce-eecCchHHHHHHHHHHHhCCcccc
Confidence 1122222 3367888889989888888 8754
No 18
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=97.82 E-value=0.00019 Score=74.22 Aligned_cols=174 Identities=19% Similarity=0.147 Sum_probs=100.8
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----C----CCCCCceEEEecCCCccCcccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----L----PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L----~~~~~vrviVVP~eY~tk~GA~ 209 (355)
.|.+.|.|+.. ++.+.+.+.+.+++..+.+ ++|+|.|++|...+ + ..+++++.+++|+. |-.
T Consensus 65 ~p~vaIlIPA~-NE~~vI~~~l~s~L~~ldY---~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~-----gp~ 135 (504)
T PRK14716 65 EKRIAIFVPAW-READVIGRMLEHNLATLDY---ENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHD-----GPT 135 (504)
T ss_pred CCceEEEEecc-CchhHHHHHHHHHHHcCCC---CCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCC-----CCC
Confidence 46777745544 4445566666554333322 68889999854322 1 13566777776543 557
Q ss_pred chhhhhhHHHHhcc--cc--cCCCceEEEecCCcccCchhhhhhhhhhhcCCccccee-EEecCCcchhhhhhh-hhcee
Q psy11724 210 FKARALQYCLEDNV--NI--LSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQG-LITYANEEVVNWVTT-LADSF 283 (355)
Q Consensus 210 ~KARALqYa~e~~v--n~--~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQG-iI~Y~n~~~~nwltt-laD~i 283 (355)
.|+.||+|+.+.-. +. -.+.|+|+.+|-|+.++++.++....... +..+.|. ++.++ ....+|++. .+|-+
T Consensus 136 ~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~--~~~~VQ~pv~~~~-~~~~~~~ag~y~~ef 212 (504)
T PRK14716 136 SKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP--RHDFVQLPVFSLP-RDWGEWVAGTYMDEF 212 (504)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC--CCCEEecceeccC-CchhHHHHHHHHHHH
Confidence 99999999987410 01 12349999999999999999986544433 4456664 44433 244555431 11111
Q ss_pred ecccchhhHHHhhhccCcceeeecCceEEEeccccccc-----c--cccch
Q psy11724 284 RVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-----S--KSVQK 327 (355)
Q Consensus 284 Rv~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-----g--WD~~~ 327 (355)
+.--.+....-..++.++. ..|...+.|-++.+++ | ||-.+
T Consensus 213 --~~~~~~~l~~r~~LG~~~~-~~Gtg~afRR~aLe~l~~~~GG~~fd~~s 260 (504)
T PRK14716 213 --AESHLKDLPVREALGGLIP-SAGVGTAFSRRALERLAAERGGQPFDSDS 260 (504)
T ss_pred --HHHHHHHHHHHHhcCCccc-cCCeeEEeEHHHHHHHHhhcCCCCCCCCC
Confidence 1111111111133444433 5688899999988777 2 87553
No 19
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.80 E-value=0.00068 Score=74.37 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=101.2
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C---CCCCCceEEEecCCCccCccccchhhhh
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L---PIHRRIREVVVPKSYKTKSGALFKARAL 215 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L---~~~~~vrviVVP~eY~tk~GA~~KARAL 215 (355)
|.|-|.|+|.....+.+++++..... .+-.-++|+|.||.|..-+ . ....+++.+..|+ +..+||.||
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~--~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~------n~~gKAGnL 331 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLG--IDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPT------HEHAKAGNI 331 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHh--ccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCC------CCcchHHHH
Confidence 78988889987655678888765422 1222347889999875432 1 1222455544432 246899999
Q ss_pred hHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhh-hcCCcccceeEEecCCc-chhhhhhhhhceeecccchh-hH
Q psy11724 216 QYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFV-LDGKHHFGQGLITYANE-EVVNWVTTLADSFRVADDMG-KL 292 (355)
Q Consensus 216 qYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi-~~g~~~~GQGiI~Y~n~-~~~nwlttlaD~iRv~DDm~-r~ 292 (355)
+++.+. .++|+|+.+|-|++++.+.+...+.+. ++.+-.+-|+-..+-|. .....+..... ..++-. .+
T Consensus 332 N~aL~~-----a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~---~~~e~~~fy 403 (852)
T PRK11498 332 NNALKY-----AKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRK---TPNEGTLFY 403 (852)
T ss_pred HHHHHh-----CCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhh---cccchhHHH
Confidence 999984 478999999999999999999988765 45444444554443221 11111211100 111100 01
Q ss_pred ---HHhhhccCcceeeecCceEEEecccccccc-cccch
Q psy11724 293 ---RLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQK 327 (355)
Q Consensus 293 ---rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~~ 327 (355)
+-......... ..|+..++|-++-++|| ||-++
T Consensus 404 ~~iq~g~~~~~a~~--~~Gs~aviRReaLeeVGGfd~~t 440 (852)
T PRK11498 404 GLVQDGNDMWDATF--FCGSCAVIRRKPLDEIGGIAVET 440 (852)
T ss_pred HHHHhHHHhhcccc--cccceeeeEHHHHHHhcCCCCCc
Confidence 10111112222 46899999999888884 88654
No 20
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.77 E-value=0.00021 Score=66.24 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=72.6
Q ss_pred EEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----C------CCCCCceEEEecCCCccCccccchh
Q psy11724 144 IRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----L------PIHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 144 irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L------~~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
|.|+|+...++.+++.+.+...... .-..++|.||-|...+ + ...+.++++..|+ -.+++
T Consensus 2 IIIp~~N~~~~~l~~~l~Sl~~~~~--~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~-------n~G~~ 72 (299)
T cd02510 2 VIIIFHNEALSTLLRTVHSVINRTP--PELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK-------REGLI 72 (299)
T ss_pred EEEEEecCcHHHHHHHHHHHHhcCc--hhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC-------CCCHH
Confidence 3467777655778888876544221 1113467777654321 1 1223456554332 36788
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecC
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYA 268 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~ 268 (355)
+|.+.+.+. ..++||++||.|+.++++.+...++.++..+..+.-|.+.+.
T Consensus 73 ~a~N~g~~~-----A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~ 123 (299)
T cd02510 73 RARIAGARA-----ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVI 123 (299)
T ss_pred HHHHHHHHH-----ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccc
Confidence 999999984 458999999999999999999999999765544444555543
No 21
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=97.75 E-value=0.00031 Score=58.63 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C--------CCCCCceEEEecCCCccCccccchhhhhhHHHHh
Q psy11724 151 DYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L--------PIHRRIREVVVPKSYKTKSGALFKARALQYCLED 221 (355)
Q Consensus 151 d~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L--------~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~ 221 (355)
+.++.+++.+.+..++-.+ -.+++|.||-+.... . ...+.++++..+. -.+|++|++.+.+.
T Consensus 7 n~~~~l~~~l~sl~~~~~~--~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~-------n~G~~~a~n~g~~~ 77 (185)
T cd04179 7 NEEENIPELVERLLAVLEE--GYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSR-------NFGKGAAVRAGFKA 77 (185)
T ss_pred ChHhhHHHHHHHHHHHhcc--CCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccC-------CCCccHHHHHHHHH
Confidence 3456677777654332210 235677777654321 1 1222333322222 25689999999984
Q ss_pred cccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcc-hhhhhhhhhceeecccchhhHHHhhhccC
Q psy11724 222 NVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEE-VVNWVTTLADSFRVADDMGKLRLQFSLFH 300 (355)
Q Consensus 222 ~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~-~~nwlttlaD~iRv~DDm~r~rfq~~~~~ 300 (355)
..+||+++||.|+.+.++.+...++.+...+.++..|.-.+.++. ..+++..+.. .... .......+
T Consensus 78 -----a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~ 145 (185)
T cd04179 78 -----ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGS------RLFN-FLIRLLLG 145 (185)
T ss_pred -----hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHHHHH------HHHH-HHHHHHcC
Confidence 234999999999999999999999987666666666665443321 1233322221 1111 11122256
Q ss_pred cceeeecCceEEEecccccccc
Q psy11724 301 KPLLSWKGSYVVTQLKTSKKRS 322 (355)
Q Consensus 301 rPlfG~HGs~LvVrg~vE~~Vg 322 (355)
+++....|+..++|.++-++++
T Consensus 146 ~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 146 VRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred CCCcCCCCceeeeHHHHHHHHH
Confidence 7888888999999999999885
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.74 E-value=0.00038 Score=55.34 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=89.7
Q ss_pred EEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----C----CCCCCceEEEecCCCccCccccchhhh
Q psy11724 144 IRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----L----PIHRRIREVVVPKSYKTKSGALFKARA 214 (355)
Q Consensus 144 irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L----~~~~~vrviVVP~eY~tk~GA~~KARA 214 (355)
+.|+|... ++.+++.+.+..++ .-.+++|.||-|..-+ + .....++++--|.. .++++|
T Consensus 2 vvip~~n~-~~~l~~~l~sl~~q----~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n-------~g~~~~ 69 (169)
T PF00535_consen 2 VVIPTYNE-AEYLERTLESLLKQ----TDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPEN-------LGFSAA 69 (169)
T ss_dssp EEEEESS--TTTHHHHHHHHHHH----SGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCC-------SHHHHH
T ss_pred EEEEeeCC-HHHHHHHHHHHhhc----cCCCEEEEEecccccccccccccccccccccccccccccc-------cccccc
Confidence 44677776 67788888766554 3446778888776622 1 12345666555543 378899
Q ss_pred hhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEe-cCCc-chhhhhhhhhceeecccchhhH
Q psy11724 215 LQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT-YANE-EVVNWVTTLADSFRVADDMGKL 292 (355)
Q Consensus 215 LqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~-Y~n~-~~~nwlttlaD~iRv~DDm~r~ 292 (355)
.+.+.+. ..++|+++||+|+.+.++.+...++++++.+.++.-|-.. .... ......... +........
T Consensus 70 ~n~~~~~-----a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 140 (169)
T PF00535_consen 70 RNRGIKH-----AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRF----SFWNRFERK 140 (169)
T ss_dssp HHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTS----EEEECCHCH
T ss_pred ccccccc-----cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccch----hhhhhhhhH
Confidence 9999983 2334999999999999999999999998866543333322 2211 111110000 122222222
Q ss_pred HHhhhccCcceeeecCceEEEecccccccc
Q psy11724 293 RLQFSLFHKPLLSWKGSYVVTQLKTSKKRS 322 (355)
Q Consensus 293 rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg 322 (355)
...... .......+|+..++|-++-+++|
T Consensus 141 ~~~~~~-~~~~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 141 IFNNIR-FWKISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp HHHTTH-STTSSEESSSCEEEEEHHHHHCH
T ss_pred HHHhhh-cCCcccccccEEEEEHHHHHhhC
Confidence 322222 23333355667888887776664
No 23
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.72 E-value=0.00043 Score=59.92 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=68.8
Q ss_pred cEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC---------CCCCCceEEEecCCCccCccccch
Q psy11724 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL---------PIHRRIREVVVPKSYKTKSGALFK 211 (355)
Q Consensus 141 ~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L---------~~~~~vrviVVP~eY~tk~GA~~K 211 (355)
.|-|.|++....+ .+.+.+.+..++ -..+|++.||.|....= ..++..++.++..+- +.|.-+|
T Consensus 2 ~vsviip~~n~~~-~l~~~L~sl~~q----~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~ 74 (196)
T cd02520 2 GVSILKPLCGVDP-NLYENLESFFQQ----DYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGE--KVGINPK 74 (196)
T ss_pred CeEEEEecCCCCc-cHHHHHHHHHhc----cCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCC--cCCCCHh
Confidence 4666677776544 366666654331 13468888888765431 123445554454431 2255578
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG 256 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g 256 (355)
++|++.+.+. ..++|++++|.|+.++++.+...++...+.
T Consensus 75 ~~~~n~g~~~-----a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~ 114 (196)
T cd02520 75 VNNLIKGYEE-----ARYDILVISDSDISVPPDYLRRMVAPLMDP 114 (196)
T ss_pred HHHHHHHHHh-----CCCCEEEEECCCceEChhHHHHHHHHhhCC
Confidence 8999888873 347999999999999999999999887543
No 24
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=97.69 E-value=0.00015 Score=63.12 Aligned_cols=161 Identities=18% Similarity=0.064 Sum_probs=96.2
Q ss_pred EEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----C---CCCCCceEEEecCCCccCccccchhh
Q psy11724 142 ICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----L---PIHRRIREVVVPKSYKTKSGALFKAR 213 (355)
Q Consensus 142 I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L---~~~~~vrviVVP~eY~tk~GA~~KAR 213 (355)
|.+.|+|.+..++.+.+.+.+..++- +++|.||.|...+ + ...+.+ .++.. + ..+|++
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~------~~eiivvdd~s~d~~~~~l~~~~~~~~~--~v~~~----~--~~g~~~ 67 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK------PLEIIVVTDGDDEPYLSILSQTVKYGGI--FVITV----P--HPGKRR 67 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC------CCEEEEEeCCCChHHHHHHHhhccCCcE--EEEec----C--CCChHH
Confidence 45667888875577777776543311 5678888765432 1 122223 33322 2 357999
Q ss_pred hhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhc-eeecccchhhH
Q psy11724 214 ALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLAD-SFRVADDMGKL 292 (355)
Q Consensus 214 ALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD-~iRv~DDm~r~ 292 (355)
|++.+.+. .+.|+|++||+|+.+.++.+..+++...+.+....+|.+.+.+.. .+++..+.. .+.... ...
T Consensus 68 a~n~g~~~-----a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ 139 (235)
T cd06434 68 ALAEGIRH-----VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPR-DSKWSFLAAEYLERRN--EEI 139 (235)
T ss_pred HHHHHHHH-----hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCc-ccHHHHHHHHHHHHHH--HHH
Confidence 99999873 378999999999999999999999998855555556655554321 122211211 111011 111
Q ss_pred HHhhhccCcceeeecCceEEEeccccccccccc
Q psy11724 293 RLQFSLFHKPLLSWKGSYVVTQLKTSKKRSKSV 325 (355)
Q Consensus 293 rfq~~~~~rPlfG~HGs~LvVrg~vE~~VgWD~ 325 (355)
+...... .......|..++.|.++.++++++.
T Consensus 140 ~~~~~~~-~~~~~~~G~~~~~rr~~l~~~~~~~ 171 (235)
T cd06434 140 RAAMSYD-GGVPCLSGRTAAYRTEILKDFLFLE 171 (235)
T ss_pred HHHHhhC-CCEEEccCcHHHHHHHHHhhhhhHH
Confidence 1122222 2455567888888888888776553
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.65 E-value=0.00069 Score=59.69 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=93.6
Q ss_pred cEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C---CC------CCCceEEEecCCCccCccccc
Q psy11724 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L---PI------HRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 141 ~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L---~~------~~~vrviVVP~eY~tk~GA~~ 210 (355)
.|-|.|+|... .+.+.+.+.+..++ ......++|.||-|..++ + .. ....++..+...- .+| +
T Consensus 2 ~vSViIp~yNe-~~~l~~~L~sl~~q--~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~--~~G--~ 74 (232)
T cd06437 2 MVTVQLPVFNE-KYVVERLIEAACAL--DYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRAD--RTG--Y 74 (232)
T ss_pred ceEEEEecCCc-HHHHHHHHHHHHhc--CCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCC--CCC--C
Confidence 46676788844 56777777654331 122234566565543322 1 00 1133444454331 223 5
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhce-eecccch
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADS-FRVADDM 289 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~-iRv~DDm 289 (355)
|+.|++.+.+. ..++||+++|.|+.++++.+..+..+..+.+..+-+|-+.+.+. ..+|+..+.+. +....++
T Consensus 75 k~~a~n~g~~~-----a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 148 (232)
T cd06437 75 KAGALAEGMKV-----AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINA-NYSLLTRVQAMSLDYHFTI 148 (232)
T ss_pred chHHHHHHHHh-----CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcC-CCchhhHhhhhhHHhhhhH
Confidence 89999999973 37899999999999999999997776665444444554444321 13454433221 0001111
Q ss_pred hhHHHhhhccCcceeeecCceEEEecccccccc-cccc
Q psy11724 290 GKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS-KSVQ 326 (355)
Q Consensus 290 ~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg-WD~~ 326 (355)
.+.. .....-.++..|...+.|.++-+++| ||-.
T Consensus 149 ~~~~---~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~ 183 (232)
T cd06437 149 EQVA---RSSTGLFFNFNGTAGVWRKECIEDAGGWNHD 183 (232)
T ss_pred hHhh---HhhcCCeEEeccchhhhhHHHHHHhCCCCCC
Confidence 1110 00112223457888888888777775 8753
No 26
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=97.51 E-value=0.0027 Score=68.47 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=100.2
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CC-CCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LP-IHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~-~~~~vrviVVP~eY~tk~GA~~ 210 (355)
+.+-| +|---++.+-+.+.|...+..+.+ ++|+|.|++|..+. +. .++.+++++||.. |-+.
T Consensus 71 ~~vsI-lVPa~nE~~VI~~~v~~ll~~ldY---p~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~-----gp~g 141 (703)
T PRK15489 71 QPLAI-MVPAWKEYDVIAKMIENMLATLDY---RRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHD-----GPTC 141 (703)
T ss_pred CceEE-EEeCCCcHHHHHHHHHHHHhcCCC---CCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCC-----CCCC
Confidence 56665 444445555555556543333333 47889898754444 11 3467899999874 4689
Q ss_pred hhhhhhHHHHh--cccccCCCc--eEEEecCCcccCchhhhhhhhhhhcCCcccceeEEe-cCCcchhhhhhhh-----h
Q psy11724 211 KARALQYCLED--NVNILSGSD--WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT-YANEEVVNWVTTL-----A 280 (355)
Q Consensus 211 KARALqYa~e~--~vn~~~~dd--WVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~-Y~n~~~~nwlttl-----a 280 (355)
|++||||+... +........ =|+..|-|.+++++.++.. +|... +.+++||-++ +.| +..||++.+ +
T Consensus 142 Ka~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~-~~~~~l~~~~~~Efa 218 (703)
T PRK15489 142 KADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLP-RKDLVQLPVLSLER-KWYEWVAGTYMDEFA 218 (703)
T ss_pred HHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcC-CcceeeeeeccCCC-ccccHHHHHHHHHHH
Confidence 99999998874 111222222 2899999999999999865 55543 3378999544 333 456887542 3
Q ss_pred ceeecccchhhHHHhhhccCcceeeecCceEEEeccccccc
Q psy11724 281 DSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR 321 (355)
Q Consensus 281 D~iRv~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V 321 (355)
.++ +-|+-.. ..++-|+ ...|.....|-++.+++
T Consensus 219 ~~~--~~~l~~r----~~l~~~i-pl~Gv~~~frr~aL~~l 252 (703)
T PRK15489 219 EWH--QKDLVVR----ESLTGTV-PSAGVGTCFSRRALLAL 252 (703)
T ss_pred HHh--hhHHHHH----HHcCCce-eccCcceeeeHHHHHHH
Confidence 333 2222211 2344455 57788888888887766
No 27
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.49 E-value=0.002 Score=55.88 Aligned_cols=110 Identities=13% Similarity=0.181 Sum_probs=70.5
Q ss_pred EEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccchhh
Q psy11724 142 ICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFKAR 213 (355)
Q Consensus 142 I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~KAR 213 (355)
+.|.|+|.+. ++.+++.+.+...+ .....+|+|.||-+...+ +.. ...++.++..+ . .++++
T Consensus 2 ~sIiip~~n~-~~~l~~~l~sl~~q--~~~~~~~evivvd~~s~d~~~~~~~~~~~-~~~~v~~i~~~---~---~~~~~ 71 (249)
T cd02525 2 VSIIIPVRNE-EKYIEELLESLLNQ--SYPKDLIEIIVVDGGSTDGTREIVQEYAA-KDPRIRLIDNP---K---RIQSA 71 (249)
T ss_pred EEEEEEcCCc-hhhHHHHHHHHHhc--cCCCCccEEEEEeCCCCccHHHHHHHHHh-cCCeEEEEeCC---C---CCchH
Confidence 4566788776 45567777654321 111247788887654332 111 12234444332 2 35778
Q ss_pred hhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEe
Q psy11724 214 ALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT 266 (355)
Q Consensus 214 ALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~ 266 (355)
|++.+.+. ...||+++||+|+.++++.+..++++.++.+...-.|...
T Consensus 72 a~N~g~~~-----a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 119 (249)
T cd02525 72 GLNIGIRN-----SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPME 119 (249)
T ss_pred HHHHHHHH-----hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEeccee
Confidence 99999984 2689999999999999999999999887766555555544
No 28
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.40 E-value=0.0033 Score=50.71 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=62.8
Q ss_pred EEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CC-CCCCceEEEecCCCccCccccchhhhhhHH
Q psy11724 145 RIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LP-IHRRIREVVVPKSYKTKSGALFKARALQYC 218 (355)
Q Consensus 145 rVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~-~~~~vrviVVP~eY~tk~GA~~KARALqYa 218 (355)
.|+|.+. ++.+++.+.+..+ .....+.+.|+.|.... +. ..+.+++ +-.+ + ..++++|++.+
T Consensus 2 ii~~~~~-~~~l~~~l~sl~~----~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~--~~~~---~--~~g~~~a~n~~ 69 (166)
T cd04186 2 IIVNYNS-LEYLKACLDSLLA----QTYPDFEVIVVDNASTDGSVELLRELFPEVRL--IRNG---E--NLGFGAGNNQG 69 (166)
T ss_pred EEEecCC-HHHHHHHHHHHHh----ccCCCeEEEEEECCCCchHHHHHHHhCCCeEE--EecC---C--CcChHHHhhHH
Confidence 3677777 7778888875433 11256777777764432 11 1112333 2211 2 46789999999
Q ss_pred HHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc
Q psy11724 219 LEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD 255 (355)
Q Consensus 219 ~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~ 255 (355)
.+. + +.+|++++|+|..+.++.+...++...+
T Consensus 70 ~~~----~-~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 70 IRE----A-KGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred Hhh----C-CCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 983 2 7999999999999999999998886554
No 29
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=97.38 E-value=0.0018 Score=58.21 Aligned_cols=163 Identities=14% Similarity=0.069 Sum_probs=94.0
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CC-CCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LP-IHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~-~~~~vrviVVP~eY~tk~GA~~ 210 (355)
+.|.+.|++.... +.+...+....+.+. ...+++|.||-|..-+ +. ..+..++.+++.. + -.+
T Consensus 9 ~~vsVvIp~yne~-~~l~~~l~~l~~~~~--~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~---~--n~G 80 (243)
T PLN02726 9 MKYSIIVPTYNER-LNIALIVYLIFKALQ--DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRP---G--KLG 80 (243)
T ss_pred ceEEEEEccCCch-hhHHHHHHHHHHHhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecC---C--CCC
Confidence 5688877877543 334444332222222 1236788888764422 10 1122355556542 2 467
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcc--hhhhhhhhhceeecccc
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEE--VVNWVTTLADSFRVADD 288 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~--~~nwlttlaD~iRv~DD 288 (355)
|+.|++.+.+. ..++||++||.|..++.+.+...++.+.+.+.++-.|......+. ..+|...+ ...
T Consensus 81 ~~~a~n~g~~~-----a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~------~~~ 149 (243)
T PLN02726 81 LGTAYIHGLKH-----ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKL------TSR 149 (243)
T ss_pred HHHHHHHHHHH-----cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHH------HHH
Confidence 89999999973 357999999999999999999999988766666555543322211 11222111 111
Q ss_pred hhhHHHhhhccCcceeeecCceEEEecccccccc
Q psy11724 289 MGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS 322 (355)
Q Consensus 289 m~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg 322 (355)
.. -.+....++.++-..+|++.+.|-++-++++
T Consensus 150 ~~-~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~ 182 (243)
T PLN02726 150 GA-NVLAQTLLWPGVSDLTGSFRLYKRSALEDLV 182 (243)
T ss_pred HH-HHHHHHHhCCCCCcCCCcccceeHHHHHHHH
Confidence 11 1111222344556678888888888877774
No 30
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=97.29 E-value=0.0019 Score=55.67 Aligned_cols=156 Identities=19% Similarity=0.132 Sum_probs=88.5
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCC-CCC--------CCCCCceEEEecCCCccCccccchhhhhh
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKP-VGL--------PIHRRIREVVVPKSYKTKSGALFKARALQ 216 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~-i~L--------~~~~~vrviVVP~eY~tk~GA~~KARALq 216 (355)
|+|... ++.+.+.+.+..++.. -.+++|.||-|.. .+. ..++.++++..+ + -.++++|++
T Consensus 3 Ip~yn~-~~~l~~~l~sl~~q~~---~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-----~--n~G~~~a~n 71 (224)
T cd06442 3 IPTYNE-RENIPELIERLDAALK---GIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-----G--KRGLGSAYI 71 (224)
T ss_pred Eeccch-hhhHHHHHHHHHHhhc---CCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-----C--CCChHHHHH
Confidence 455554 3445565554433221 2357788886643 211 122233333222 2 367899999
Q ss_pred HHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchhhHHHhh
Q psy11724 217 YCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQF 296 (355)
Q Consensus 217 Ya~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~rfq~ 296 (355)
.+.+. ..+|||++||.|..++++.+..+++.+.+.+.++..|..........+|-...-=..+....+.+
T Consensus 72 ~g~~~-----a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 141 (224)
T cd06442 72 EGFKA-----ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLAR----- 141 (224)
T ss_pred HHHHH-----cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHH-----
Confidence 99984 33599999999999999999999999766566655555444322212221000000001111111
Q ss_pred hccCcceeeecCceEEEecccccccc
Q psy11724 297 SLFHKPLLSWKGSYVVTQLKTSKKRS 322 (355)
Q Consensus 297 ~~~~rPlfG~HGs~LvVrg~vE~~Vg 322 (355)
..+..+.....|++.+++-++-++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 142 LLLGRKVSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred HHcCCCCCCCCCccchhhHHHHHHHh
Confidence 11355666677888888888888885
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=97.28 E-value=0.0042 Score=52.71 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--C--------CCCCCceEEEecCCCccCcccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--L--------PIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--L--------~~~~~vrviVVP~eY~tk~GA~ 209 (355)
|.+.|.|+|.....+.+.+.+.+..++. ..+++|.||-|...+ . ..++.++.+ ..+ + ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~----~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~--~~~---~--~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQT----YPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVV--FRE---E--NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCc----CCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEE--Ecc---c--CC
Confidence 3567778888776466777777654422 236778777654322 1 122334443 222 2 36
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL 254 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~ 254 (355)
++++|++.+.+. ...+|+++||+|..++++.+..+++..+
T Consensus 70 g~~~a~n~g~~~-----a~~d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 70 GISAATNSALEL-----ATGEFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred CHHHHHHHHHHh-----hcCCEEEEECCCCcCChHHHHHHHHHHH
Confidence 789999999983 3469999999999999999999998883
No 32
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.20 E-value=0.0029 Score=52.51 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=63.5
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CCCCCCceEEEecCCCccCccccchhhhhhHHHH
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LPIHRRIREVVVPKSYKTKSGALFKARALQYCLE 220 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e 220 (355)
|+|... ++.+++.+.+... -...+|+|.||-|...+ +.....-...++.. + ..+++.|++.+.+
T Consensus 4 i~~~n~-~~~l~~~l~sl~~----q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~----~--~~g~~~a~n~~~~ 72 (202)
T cd06433 4 TPTYNQ-AETLEETIDSVLS----QTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISE----P--DKGIYDAMNKGIA 72 (202)
T ss_pred Eeccch-HHHHHHHHHHHHh----CCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEec----C--CcCHHHHHHHHHH
Confidence 566655 3566777765433 23346778777543321 11101112333432 2 3578899999998
Q ss_pred hcccccCCCceEEEecCCcccCchhhhhhhhhh-hcCCcccceeEEe
Q psy11724 221 DNVNILSGSDWVVHLDEETLLTENSIRGVLNFV-LDGKHHFGQGLIT 266 (355)
Q Consensus 221 ~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi-~~g~~~~GQGiI~ 266 (355)
. ...+||++||+|..+.++.+...++.. +..+.++-.|-..
T Consensus 73 ~-----a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 114 (202)
T cd06433 73 L-----ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVL 114 (202)
T ss_pred H-----cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeE
Confidence 4 357999999999999999999998555 4444444444433
No 33
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=97.13 E-value=0.0071 Score=56.85 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=86.0
Q ss_pred EEEEecCchHHHHHHHHHHhHHHhhhcC-cccEEEEEEecCCCC-CC-------------CCCCceEEEecCCCccCccc
Q psy11724 144 IRIVTRGDYAQLVKDNVARNMARCNEAG-LENYIIEVVTDKPVG-LP-------------IHRRIREVVVPKSYKTKSGA 208 (355)
Q Consensus 144 irVVTrGd~p~lVr~sV~~~~~~~~~~g-L~nf~V~VVtDk~i~-L~-------------~~~~vrviVVP~eY~tk~GA 208 (355)
|.++|.|..++.+.+++.+..+.+...+ -.+|+|.|+-|...+ +. -.+.+++.++.+. + +.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~---~-~~ 78 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRR---E-NT 78 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC---C-CC
Confidence 5589999999989888875332221122 257889777665442 10 0114677777776 2 24
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh-cCCcccceeEEecCCcchhhhhhhhh
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL-DGKHHFGQGLITYANEEVVNWVTTLA 280 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~-~g~~~~GQGiI~Y~n~~~~nwlttla 280 (355)
-+|+.+|+.+... ...+.++|+.||.|+.+..+.+..++.+.+ +.+..+-|+...+.| ..++++.+.
T Consensus 79 g~Kag~l~~~~~~---~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n--~~~~~~~~~ 146 (254)
T cd04191 79 GRKAGNIADFCRR---WGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIG--AETLFARLQ 146 (254)
T ss_pred CccHHHHHHHHHH---hCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeEC--CCCHHHHHH
Confidence 5699999999973 446789999999999999999999999886 545445555544433 235555444
No 34
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.07 E-value=0.033 Score=60.08 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=90.6
Q ss_pred CCCcEEEEEEecCchHHHHHHHHHHhHHHhhhc-CcccEEEEEEecCCCCC------------C-C-CCCceEEEecCCC
Q psy11724 138 LAPFICIRIVTRGDYAQLVKDNVARNMARCNEA-GLENYIIEVVTDKPVGL------------P-I-HRRIREVVVPKSY 202 (355)
Q Consensus 138 la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~-gL~nf~V~VVtDk~i~L------------~-~-~~~vrviVVP~eY 202 (355)
..+.+-+.+++.+..++.|..++....+-..+. .-.+|+|.|++|...+- . . ....++.+.-+..
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 557899989999999998888877655444332 34689999999855431 0 0 0134666655553
Q ss_pred ccCccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCC--cchhhhhhhhh
Q psy11724 203 KTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN--EEVVNWVTTLA 280 (355)
Q Consensus 203 ~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n--~~~~nwlttla 280 (355)
+ .-+|+..|+.+.+. .-.+.|+++.+|-||+++.|++...+.+.+... +-|+|.=+. .+..|+++.+.
T Consensus 202 n----~~~KaGNl~~~~~~---~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP---~vGlVQt~~~~~n~~slfaR~q 271 (691)
T PRK05454 202 N----VGRKAGNIADFCRR---WGGAYDYMVVLDADSLMSGDTLVRLVRLMEANP---RAGLIQTLPVAVGADTLFARLQ 271 (691)
T ss_pred C----CCccHHHHHHHHHh---cCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCc---CEEEEeCCccCcCCCCHHHHHH
Confidence 3 35699999999883 446789999999999999999999999887322 345554110 12345655554
No 35
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.02 E-value=0.011 Score=50.49 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=63.0
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccchhhhhhH
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFKARALQY 217 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~KARALqY 217 (355)
|+|... ++.+++.+.+..++ -..+++|.||-+..-+ +.....++.+..|+. .+.++|++.
T Consensus 3 I~~~n~-~~~l~~~l~sl~~q----~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n-------~g~~~~~n~ 70 (202)
T cd04185 3 VVTYNR-LDLLKECLDALLAQ----TRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPEN-------LGGAGGFYE 70 (202)
T ss_pred EEeeCC-HHHHHHHHHHHHhc----cCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECccc-------cchhhHHHH
Confidence 677754 35566666654332 1224567666543321 111111344443332 455666666
Q ss_pred HHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEec
Q psy11724 218 CLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITY 267 (355)
Q Consensus 218 a~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y 267 (355)
+.+.. .....||+++||+|+.++++.+...++...+.+..+..|.+.+
T Consensus 71 ~~~~a--~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (202)
T cd04185 71 GVRRA--YELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD 118 (202)
T ss_pred HHHHH--hccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc
Confidence 66642 2457899999999999999999999998875444444443443
No 36
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=96.97 E-value=0.022 Score=61.72 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=100.1
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------C-CCCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------L-PIHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L-~~~~~vrviVVP~eY~tk~GA~~ 210 (355)
+.|-|.|+. =++...+.+.+...+.. ..-++|+|.|++|..++ + ..+++++++++|+. |-+.
T Consensus 63 ~~vsIlVPa-~nE~~vi~~~i~~ll~~---ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~-----g~~g 133 (727)
T PRK11234 63 KPLAIMVPA-WNETGVIGNMAELAATT---LDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARP-----GPTS 133 (727)
T ss_pred CCEEEEEec-CcchhhHHHHHHHHHHh---CCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCC-----CCCC
Confidence 677774444 34444455555433222 22346889999653333 1 13466788777773 3468
Q ss_pred hhhhhhHHHHhc-ccc---cCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhh-hhhceeec
Q psy11724 211 KARALQYCLEDN-VNI---LSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVT-TLADSFRV 285 (355)
Q Consensus 211 KARALqYa~e~~-vn~---~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlt-tlaD~iRv 285 (355)
||.||+++.+.- ... -.+.+-++.+|-|+.++++.++ ..++..+.. ++-|+...+.+..+.+|++ ..++.+..
T Consensus 134 Ka~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~ 211 (727)
T PRK11234 134 KADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-DLIQIPVYPFEREWTHFTSGTYIDEFAE 211 (727)
T ss_pred HHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-CeEeecccCCCccHHHHHHHHHHHHHHH
Confidence 999999999851 001 1234678889999999999998 556665544 7778765533433445541 11222211
Q ss_pred ccchhhHHHhhhccCcceeeecCceEEE-ecc--cccccc----cccchhh
Q psy11724 286 ADDMGKLRLQFSLFHKPLLSWKGSYVVT-QLK--TSKKRS----KSVQKRS 329 (355)
Q Consensus 286 ~DDm~r~rfq~~~~~rPlfG~HGs~LvV-rg~--vE~~Vg----WD~~~~~ 329 (355)
-. ++.......++-|. +.-|+.... |-. +..++| ||..+..
T Consensus 212 ~~--~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lT 259 (727)
T PRK11234 212 LH--GKDVPVREALAGQV-PSAGVGTCFSRRAVTALLEDGDGIAFDVQSLT 259 (727)
T ss_pred Hh--hhhhHHHHHcCCCc-ccCCceEEEecccHHHHHHhcCCCCcCCCcch
Confidence 11 12212233444454 456877777 763 455665 8876653
No 37
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=96.82 E-value=0.011 Score=49.34 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=61.3
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC--------CCCCCceEEEecCCCccCccccchhhhhhH
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL--------PIHRRIREVVVPKSYKTKSGALFKARALQY 217 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L--------~~~~~vrviVVP~eY~tk~GA~~KARALqY 217 (355)
|++. +.++.+++.+.+..++. ..++++.||.|.+..- ......+++.+-. .++..++++|++.
T Consensus 3 ip~~-n~~~~l~~~l~sl~~q~----~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~ 73 (182)
T cd06420 3 ITTY-NRPEALELVLKSVLNQS----ILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQ----EDEGFRKAKIRNK 73 (182)
T ss_pred Eeec-CChHHHHHHHHHHHhcc----CCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEc----CCcchhHHHHHHH
Confidence 4554 45566788877654432 3467788887755331 1111122222211 1223578899999
Q ss_pred HHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh
Q psy11724 218 CLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL 254 (355)
Q Consensus 218 a~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~ 254 (355)
+.+. ..++||++||.|++++++.+...+++..
T Consensus 74 g~~~-----a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 74 AIAA-----AKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHH-----hcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 9973 4579999999999999999999998874
No 38
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.81 E-value=0.018 Score=52.33 Aligned_cols=148 Identities=9% Similarity=0.004 Sum_probs=84.8
Q ss_pred HHHHHHHHHhHHHhhhc------CcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHHHHhc-cc-c
Q psy11724 154 QLVKDNVARNMARCNEA------GLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDN-VN-I 225 (355)
Q Consensus 154 ~lVr~sV~~~~~~~~~~------gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~-vn-~ 225 (355)
..+.+++.+.+++--+. .-.+++|.||.|-... . ..+|+-|..|+.+.- .. .
T Consensus 11 ~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------~--~~gk~~~~~~~~~~~~~~~~ 70 (244)
T cd04190 11 EELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------K--NRGKRDSQLWFFNYFCRVLF 70 (244)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------c--cCcchHHHHHHHHHHHHHhh
Confidence 45666666543322110 0236667777775544 2 134666666544320 01 2
Q ss_pred cCCCceEEEecCCcccCchhhhhhhhhhhcCC-cccceeEEecCCcchhhhhhhhhceeecccchhhHHHhhhccCccee
Q psy11724 226 LSGSDWVVHLDEETLLTENSIRGVLNFVLDGK-HHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLL 304 (355)
Q Consensus 226 ~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~-~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r~rfq~~~~~rPlf 304 (355)
....++|+++|.||.++++.+...+++....+ ...-+|.+...+ ...+|++.+.+.=-..-... -+.+...++.. .
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~-~~~~~~~~~q~~ey~~~~~~-~~~~~s~~g~~-~ 147 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMG-KKQGPLVMYQVFEYAISHWL-DKAFESVFGFV-T 147 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcC-CcchhHHHhHheehhhhhhh-cccHHHcCCce-E
Confidence 46899999999999999999999998885323 223355554333 12466665554210000000 11223445554 4
Q ss_pred eecCceEEEecccccccccc
Q psy11724 305 SWKGSYVVTQLKTSKKRSKS 324 (355)
Q Consensus 305 G~HGs~LvVrg~vE~~VgWD 324 (355)
..+|...+.|.++.++++.+
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~ 167 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGG 167 (244)
T ss_pred ECCCceEEEEehhhcCCccc
Confidence 58999999999998888543
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=96.62 E-value=0.024 Score=49.50 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=57.1
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCC----CCCCceEEEecCCCccCccccchhhhhhHHHHh
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLP----IHRRIREVVVPKSYKTKSGALFKARALQYCLED 221 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~----~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~ 221 (355)
|+|--...+.+++.+.+...+ ++++.||-+.+.+-. ..+..++.++..+ + -+++++|.+.+.+.
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-------~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~---~--n~G~~~a~N~g~~~ 70 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-------VDKVVVVDNSSGNDIELRLRLNSEKIELIHLG---E--NLGIAKALNIGIKA 70 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-------CCEEEEEeCCCCccHHHHhhccCCcEEEEECC---C--ceehHHhhhHHHHH
Confidence 455555447788888765442 455666654332211 1011233334332 2 36789999999884
Q ss_pred cccccCCCceEEEecCCcccCchhhhhhh
Q psy11724 222 NVNILSGSDWVVHLDEETLLTENSIRGVL 250 (355)
Q Consensus 222 ~vn~~~~ddWVvHLDEDTll~edsv~gIl 250 (355)
- .-.+.|||++||+|+.++++.+..++
T Consensus 71 a--~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 71 A--LENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred H--HhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 1 11268999999999999999999885
No 40
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.48 E-value=0.075 Score=45.08 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=61.7
Q ss_pred EEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----C---C-CCCCceEEEecCCCccCccccchhhhh
Q psy11724 145 RIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----L---P-IHRRIREVVVPKSYKTKSGALFKARAL 215 (355)
Q Consensus 145 rVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L---~-~~~~vrviVVP~eY~tk~GA~~KARAL 215 (355)
.|+|.... +.+.+.+.+..++- ..+|+|.||-|..-+ + . .++ .+..+++.+ + -.++++|+
T Consensus 3 vIp~yn~~-~~l~~~l~sl~~q~----~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~---~--~~G~~~~~ 71 (214)
T cd04196 3 LMATYNGE-KYLREQLDSILAQT----YKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNG---K--NLGVARNF 71 (214)
T ss_pred EEEecCcH-HHHHHHHHHHHhCc----CCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCC---C--CccHHHHH
Confidence 46777654 45667776554321 226778888654322 1 1 111 233444433 2 46788999
Q ss_pred hHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh
Q psy11724 216 QYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL 254 (355)
Q Consensus 216 qYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~ 254 (355)
+.+.+ ...++||++||+|..+.++.+..+++.+.
T Consensus 72 n~g~~-----~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 72 ESLLQ-----AADGDYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred HHHHH-----hCCCCEEEEECCCcccChhHHHHHHHHHh
Confidence 99976 35799999999999999999999999854
No 41
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.29 E-value=0.066 Score=46.07 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=65.8
Q ss_pred EEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCC--CCCCCceEEEecCCCccCccccchhhhhhHHHH
Q psy11724 143 CIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGL--PIHRRIREVVVPKSYKTKSGALFKARALQYCLE 220 (355)
Q Consensus 143 ~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L--~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e 220 (355)
.+.|+|.+.. +.+.+.+.+...+. . .+++|.||-|...+- ......++++++.+ ..+++|++.+.+
T Consensus 2 svii~~~n~~-~~l~~~l~sl~~q~---~-~~~evivvdd~s~d~~~~~~~~~~~~~~~~~-------~g~~~a~n~g~~ 69 (221)
T cd02522 2 SIIIPTLNEA-ENLPRLLASLRRLN---P-LPLEIIVVDGGSTDGTVAIARSAGVVVISSP-------KGRARQMNAGAA 69 (221)
T ss_pred EEEEEccCcH-HHHHHHHHHHHhcc---C-CCcEEEEEeCCCCccHHHHHhcCCeEEEeCC-------cCHHHHHHHHHH
Confidence 3446666663 45677776543321 2 567788876544221 10011344555432 457889998887
Q ss_pred hcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecC
Q psy11724 221 DNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYA 268 (355)
Q Consensus 221 ~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~ 268 (355)
. + .++||+++|+|..++++.+..++......+...|.+...+.
T Consensus 70 ~----a-~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 112 (221)
T cd02522 70 A----A-RGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFD 112 (221)
T ss_pred h----c-cCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeec
Confidence 3 2 37999999999999999998875555544444444444433
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=96.15 E-value=0.021 Score=50.84 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=73.8
Q ss_pred CceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcc
Q psy11724 192 RIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEE 271 (355)
Q Consensus 192 ~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~ 271 (355)
+++.+||..+ .-|.-.|.-+|..+.+. ...+|+++++|+|+.++++.++.++...++.+..+--|+-.+. +
T Consensus 2 ~v~~lvv~~~---~~g~N~Kv~nL~~~~~~----~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~--~ 72 (175)
T PF13506_consen 2 HVDRLVVGGP---PRGCNPKVNNLAQGLEA----GAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGV--P 72 (175)
T ss_pred CCCEEEECCC---CCCCChHHHHHHHHHHh----hCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccccc--C
Confidence 4555566655 33456788999999872 4789999999999999999999999998875433222221111 2
Q ss_pred hhhhhhhhhceeecccchhhHHHhhhccCcceeeecCceEEEeccccccc-cccc
Q psy11724 272 VVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKSV 325 (355)
Q Consensus 272 ~~nwlttlaD~iRv~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD~ 325 (355)
..+|-..+.-.+- .+....++. +...-+.|.|+ +++|-++.+++ |++.
T Consensus 73 ~~~~~~~l~~~~~---~~~~~~~~a--~~~~~~~~G~~-m~~rr~~L~~~GG~~~ 121 (175)
T PF13506_consen 73 ARGFWSRLEAAFF---NFLPGVLQA--LGGAPFAWGGS-MAFRREALEEIGGFEA 121 (175)
T ss_pred CcCHHHHHHHHHH---hHHHHHHHH--hcCCCceecce-eeeEHHHHHHcccHHH
Confidence 2344444433332 222222222 56677789666 66666655566 4443
No 43
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.12 E-value=0.069 Score=45.43 Aligned_cols=104 Identities=16% Similarity=0.249 Sum_probs=66.3
Q ss_pred EEecCc-hHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC---------CCCCCCceEEEecCCCccCccccchhhhh
Q psy11724 146 IVTRGD-YAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG---------LPIHRRIREVVVPKSYKTKSGALFKARAL 215 (355)
Q Consensus 146 VVTrGd-~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~---------L~~~~~vrviVVP~eY~tk~GA~~KARAL 215 (355)
|+|.-. .++.+.+.+.+...+- ..++++.||.|.... +.....++++.-|+ -+++++|.
T Consensus 4 ip~~n~~~~~~l~~~l~Sl~~q~----~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~-------n~G~~~a~ 72 (201)
T cd04195 4 MSVYIKEKPEFLREALESILKQT----LPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEK-------NRGLGKAL 72 (201)
T ss_pred EEccccchHHHHHHHHHHHHhcC----CCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCc-------cccHHHHH
Confidence 555543 3467778887664422 225677777664311 11111244433322 36889999
Q ss_pred hHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC-CcccceeEE
Q psy11724 216 QYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG-KHHFGQGLI 265 (355)
Q Consensus 216 qYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g-~~~~GQGiI 265 (355)
+.+.+. ..++||+++|.|..++++.+...+++.+.. +..+..|..
T Consensus 73 N~g~~~-----a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 73 NEGLKH-----CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHHHh-----cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 999983 468999999999999999999999998643 344444443
No 44
>PRK10073 putative glycosyl transferase; Provisional
Probab=95.97 E-value=0.088 Score=50.98 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=70.9
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------C-CCCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------L-PIHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L-~~~~~vrviVVP~eY~tk~GA~~ 210 (355)
|.|.+.|++-.. ++.+++.+.+... --..+++|.||-|..-+ + ...+++++ +-. +| .+
T Consensus 6 p~vSVIIP~yN~-~~~L~~~l~Sl~~----Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~v--i~~----~n--~G 72 (328)
T PRK10073 6 PKLSIIIPLYNA-GKDFRAFMESLIA----QTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRL--LHQ----AN--AG 72 (328)
T ss_pred CeEEEEEeccCC-HHHHHHHHHHHHh----CCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEE--EEC----CC--CC
Confidence 567776676554 3567777776543 22357889888875432 1 12344544 432 32 46
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCccc
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHF 260 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~ 260 (355)
.+.|.+.+.+. ..++||.+||.|..+.++.+...++.+++++.++
T Consensus 73 ~~~arN~gl~~-----a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dv 117 (328)
T PRK10073 73 VSVARNTGLAV-----ATGKYVAFPDADDVVYPTMYETLMTMALEDDLDV 117 (328)
T ss_pred hHHHHHHHHHh-----CCCCEEEEECCCCccChhHHHHHHHHHHhCCCCE
Confidence 78899999973 4679999999999999999999999887665554
No 45
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.94 E-value=0.11 Score=39.93 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCC-----CCCC--ceEEEecCCCccCccccchhhhhhHH
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLP-----IHRR--IREVVVPKSYKTKSGALFKARALQYC 218 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~-----~~~~--vrviVVP~eY~tk~GA~~KARALqYa 218 (355)
+++.|. +..+.+++.+... ....++++.++.+....-. .... .+...++.. +..+++.|++++
T Consensus 3 i~~~~~-~~~l~~~l~s~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~ 72 (156)
T cd00761 3 IPAYNE-EPYLERCLESLLA----QTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINE-----ENQGLAAARNAG 72 (156)
T ss_pred EeecCc-HHHHHHHHHHHHh----CCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEec-----CCCChHHHHHHH
Confidence 455555 4556666654432 2224667888777553311 1000 122223322 257888999999
Q ss_pred HHhcccccCCCceEEEecCCcccCchhhhhhh-hhhhcCCc
Q psy11724 219 LEDNVNILSGSDWVVHLDEETLLTENSIRGVL-NFVLDGKH 258 (355)
Q Consensus 219 ~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl-~fi~~g~~ 258 (355)
.+. . ..+|++++|+|..+..+.+..++ .+....+.
T Consensus 73 ~~~---~--~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 73 LKA---A--RGEYILFLDADDLLLPDWLERLVAELLADPEA 108 (156)
T ss_pred HHH---h--cCCEEEEECCCCccCccHHHHHHHHHhcCCCc
Confidence 984 2 69999999999999999988873 33443333
No 46
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=95.86 E-value=0.3 Score=41.22 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=35.7
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD 255 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~ 255 (355)
.+|++|++.+.+. ..++||+++|.|..++++.+..+++....
T Consensus 66 ~G~~~a~n~g~~~-----a~~d~i~~~D~D~~~~~~~l~~l~~~~~~ 107 (181)
T cd04187 66 FGQQAALLAGLDH-----ARGDAVITMDADLQDPPELIPEMLAKWEE 107 (181)
T ss_pred CCcHHHHHHHHHh-----cCCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5789999999984 34699999999999999999999988543
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=95.61 E-value=0.42 Score=41.80 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=65.7
Q ss_pred EEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CC------CCCCceEEEecCCCccCccccchhhh
Q psy11724 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LP------IHRRIREVVVPKSYKTKSGALFKARA 214 (355)
Q Consensus 146 VVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~------~~~~vrviVVP~eY~tk~GA~~KARA 214 (355)
|+|... .+.+++.+.+...+ ....++++.||-|...+ +. ..+++++++.+..... .++.+-|
T Consensus 3 Ip~yn~-~~~l~~~l~sl~~q---~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~~a 75 (219)
T cd06913 3 LPVHNG-EQWLDECLESVLQQ---DFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPS---PKGVGYA 75 (219)
T ss_pred EeecCc-HHHHHHHHHHHHhC---CCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCC---CccHHHH
Confidence 455544 35677777654321 11125778888764422 11 1234555555544322 3566778
Q ss_pred hhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCc-ccceeEEe
Q psy11724 215 LQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKH-HFGQGLIT 266 (355)
Q Consensus 215 LqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~-~~GQGiI~ 266 (355)
++++.+. ..++|+++||.|++++++.+...+....+... .+|.++..
T Consensus 76 ~N~g~~~-----a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~ 123 (219)
T cd06913 76 KNQAIAQ-----SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRR 123 (219)
T ss_pred HHHHHHh-----cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEe
Confidence 8888873 45799999999999999999887777754332 23444433
No 48
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.56 E-value=0.079 Score=48.61 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHhhhcCcccEEEEEEecCC-CC------CCCCCCceEEEecCCCccCccccchhhhhhHHHHhccccc
Q psy11724 154 QLVKDNVARNMARCNEAGLENYIIEVVTDKP-VG------LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNIL 226 (355)
Q Consensus 154 ~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~-i~------L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~ 226 (355)
+.+++.+.+..++ .++|.||-+.+ .. +...+.+ .++..+ + -++.|.|++.+.+. ...
T Consensus 8 ~~l~~~l~sl~~q-------~~~iiVVDN~S~~~~~~~~~~~~~~~i--~~i~~~---~--N~G~a~a~N~Gi~~--a~~ 71 (281)
T TIGR01556 8 EHLGELITSLPKQ-------VDRIIAVDNSPHSDQPLKNARLRGQKI--ALIHLG---D--NQGIAGAQNQGLDA--SFR 71 (281)
T ss_pred HHHHHHHHHHHhc-------CCEEEEEECcCCCcHhHHHHhccCCCe--EEEECC---C--CcchHHHHHHHHHH--HHH
Confidence 4577777654331 34565555442 11 1222334 444433 2 25667777777663 223
Q ss_pred CCCceEEEecCCcccCchhhhhhhhhhhcC
Q psy11724 227 SGSDWVVHLDEETLLTENSIRGVLNFVLDG 256 (355)
Q Consensus 227 ~~ddWVvHLDEDTll~edsv~gIl~fi~~g 256 (355)
.+.|||++||+|+.++++.+...++.++..
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999999998753
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=95.55 E-value=0.32 Score=42.27 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CC-CCCCceEEEecCCCccCccccchhhhhhHHHHhcc
Q psy11724 153 AQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LP-IHRRIREVVVPKSYKTKSGALFKARALQYCLEDNV 223 (355)
Q Consensus 153 p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~-~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~v 223 (355)
.+.+.+.+.+..+........++++.||-|..-+ +. ..+.. +.++..+ + -.+|+.|++-+.+.
T Consensus 9 ~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~---~--n~G~~~a~~~g~~~-- 80 (211)
T cd04188 9 EKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLP---K--NRGKGGAVRAGMLA-- 80 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcc---c--CCCcHHHHHHHHHH--
Confidence 3445555554433322112346788888664422 11 11111 2233322 2 36788999998874
Q ss_pred cccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEec
Q psy11724 224 NILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITY 267 (355)
Q Consensus 224 n~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y 267 (355)
..++||++||.|..++.+.+..+++...+.+.++..|.-..
T Consensus 81 ---a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~ 121 (211)
T cd04188 81 ---ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAH 121 (211)
T ss_pred ---hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeec
Confidence 24599999999999999999999999765566655565443
No 50
>PRK10018 putative glycosyl transferase; Provisional
Probab=94.88 E-value=0.35 Score=46.29 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCC-------CCCCceEEEecCCCccCccccchh
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLP-------IHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~-------~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
|.|.|.++|..... .+.+++.+...+ -..+|++.||-|...... .....++.++..+ + -.+.+
T Consensus 5 p~VSVIip~yN~~~-~l~~~l~Svl~Q----t~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~---~--n~G~~ 74 (279)
T PRK10018 5 PLISIYMPTWNRQQ-LAIRAIKSVLRQ----DYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND---I--NSGAC 74 (279)
T ss_pred CEEEEEEEeCCCHH-HHHHHHHHHHhC----CCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC---C--CCCHH
Confidence 56777677766543 455777655432 235788888877553211 1012244444433 3 35678
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD 255 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~ 255 (355)
.|.+.+.+. ..++||.+||.|....++.+...+++...
T Consensus 75 ~a~N~gi~~-----a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 75 AVRNQAIML-----AQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHH-----cCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 888988873 46899999999999999999888887653
No 51
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=94.58 E-value=0.22 Score=44.66 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred EEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----CCCCCCceEEEecCCCccCccccchhhhhhH
Q psy11724 142 ICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----LPIHRRIREVVVPKSYKTKSGALFKARALQY 217 (355)
Q Consensus 142 I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----L~~~~~vrviVVP~eY~tk~GA~~KARALqY 217 (355)
|.+.|+|+.. .+.+.+.+.+...++ .+|.||-+..-+ +.....++++.. + ..+.+.|.++
T Consensus 2 isvii~~~Ne-~~~l~~~l~sl~~~~-------~eiivvD~gStD~t~~i~~~~~~~v~~~------~--~~g~~~~~n~ 65 (229)
T cd02511 2 LSVVIITKNE-ERNIERCLESVKWAV-------DEIIVVDSGSTDRTVEIAKEYGAKVYQR------W--WDGFGAQRNF 65 (229)
T ss_pred EEEEEEeCCc-HHHHHHHHHHHhccc-------CEEEEEeCCCCccHHHHHHHcCCEEEEC------C--CCChHHHHHH
Confidence 4555777764 344666665443221 146666543221 111234555433 2 3467888999
Q ss_pred HHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCC
Q psy11724 218 CLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGK 257 (355)
Q Consensus 218 a~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~ 257 (355)
+.+. ...+||++||.|..++++.+..+.+.+++++
T Consensus 66 ~~~~-----a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 66 ALEL-----ATNDWVLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred HHHh-----CCCCEEEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 9973 3456999999999999999999999988654
No 52
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=93.49 E-value=3.6 Score=40.23 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=64.1
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhc----CcccEEEEEEecCCCC--------CCC-----CCCceEEEecCCC
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEA----GLENYIIEVVTDKPVG--------LPI-----HRRIREVVVPKSY 202 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~----gL~nf~V~VVtDk~i~--------L~~-----~~~vrviVVP~eY 202 (355)
+.|.+.|++--. .+.+.+.+.+..+++... .-.+++|.||-|..-+ +.. ..+++++--|+
T Consensus 70 ~~isVVIP~yNe-~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~-- 146 (333)
T PTZ00260 70 VDLSIVIPAYNE-EDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR-- 146 (333)
T ss_pred eEEEEEEeeCCC-HHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC--
Confidence 457775555544 344666665554444321 1225778888774422 111 12344433332
Q ss_pred ccCccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh
Q psy11724 203 KTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL 254 (355)
Q Consensus 203 ~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~ 254 (355)
-++|+.|++.+.+. ..++||+.+|.|+..+.+.+..+++.++
T Consensus 147 -----N~G~~~A~~~Gi~~-----a~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 147 -----NKGKGGAVRIGMLA-----SRGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred -----CCChHHHHHHHHHH-----ccCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 26899999998873 3579999999999999999888888775
No 53
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=93.42 E-value=1.1 Score=42.25 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=35.9
Q ss_pred ccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhh
Q psy11724 208 ALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNF 252 (355)
Q Consensus 208 A~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~f 252 (355)
.-.+|+|.+.+.+. ...+||+++|-|-++.++.+..++++
T Consensus 73 ~f~~a~arN~g~~~-----A~~d~l~flD~D~i~~~~~i~~~~~~ 112 (281)
T PF10111_consen 73 PFSRAKARNIGAKY-----ARGDYLIFLDADCIPSPDFIEKLLNH 112 (281)
T ss_pred CcCHHHHHHHHHHH-----cCCCEEEEEcCCeeeCHHHHHHHHHH
Confidence 56889999999984 47899999999999999999999994
No 54
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=93.27 E-value=0.51 Score=45.64 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=67.2
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----CCCCCCceEEEecCC--CccCccccchhh
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----LPIHRRIREVVVPKS--YKTKSGALFKAR 213 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----L~~~~~vrviVVP~e--Y~tk~GA~~KAR 213 (355)
+.|.+.|++... .+.+.+.+.+..+...+ . ..++|.||-|..-+ +.....+++ ++.. ........+|++
T Consensus 31 ~~vSVVIPayNe-e~~I~~~l~sl~~~~~~-~-~~~EIIVVDDgStD~T~~ia~~~~~~v--~~~~~~~~~~~~n~Gkg~ 105 (306)
T PRK13915 31 RTVSVVLPALNE-EETVGKVVDSIRPLLME-P-LVDELIVIDSGSTDATAERAAAAGARV--VSREEILPELPPRPGKGE 105 (306)
T ss_pred CCEEEEEecCCc-HHHHHHHHHHHHHHhcc-C-CCcEEEEEeCCCccHHHHHHHHhcchh--hcchhhhhccccCCCHHH
Confidence 567786777764 34466666544333221 1 13567776654322 111011221 1211 000012478999
Q ss_pred hhhHHHHhcccccCCCceEEEecCCcc-cCchhhhhhhhhhh-cCCccccee
Q psy11724 214 ALQYCLEDNVNILSGSDWVVHLDEETL-LTENSIRGVLNFVL-DGKHHFGQG 263 (355)
Q Consensus 214 ALqYa~e~~vn~~~~ddWVvHLDEDTl-l~edsv~gIl~fi~-~g~~~~GQG 263 (355)
|++.+.+. ..+|||++||.|+. .+.+.+..+++.+. +++.++-.|
T Consensus 106 A~~~g~~~-----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 106 ALWRSLAA-----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred HHHHHHHh-----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 99998863 46799999999997 89999999998875 555555555
No 55
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=92.98 E-value=2 Score=41.69 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=66.3
Q ss_pred cEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccchh
Q psy11724 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 141 ~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
.+.+.|++.-. .+.+.+.+.+..+.+.... .+|+|.||-|..-+ +......+++++..+ + ..+|+
T Consensus 7 ~vSVVIP~yNE-~~~i~~~l~~l~~~~~~~~-~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~---~--n~G~~ 79 (325)
T PRK10714 7 KVSVVIPVYNE-QESLPELIRRTTAACESLG-KEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLN---R--NYGQH 79 (325)
T ss_pred eEEEEEcccCc-hhhHHHHHHHHHHHHHhCC-CCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeC---C--CCCHH
Confidence 47776666543 3344444443333333322 36788888774422 111123455544332 2 36888
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcc
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHH 259 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~ 259 (355)
.|++-+.+. ..+|||+.||.|...+++.+...++..++| ++
T Consensus 80 ~A~~~G~~~-----A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~-~D 120 (325)
T PRK10714 80 SAIMAGFSH-----VTGDLIITLDADLQNPPEEIPRLVAKADEG-YD 120 (325)
T ss_pred HHHHHHHHh-----CCCCEEEEECCCCCCCHHHHHHHHHHHHhh-CC
Confidence 999988873 367999999999999999999999988754 44
No 56
>PRK10063 putative glycosyl transferase; Provisional
Probab=91.51 E-value=4 Score=37.97 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=55.5
Q ss_pred cEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CCCCC-CceEEEecCCCccCccccchhhh
Q psy11724 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LPIHR-RIREVVVPKSYKTKSGALFKARA 214 (355)
Q Consensus 141 ~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~~~~-~vrviVVP~eY~tk~GA~~KARA 214 (355)
.|-+.++|--. .+.+.+.+.+..+.... .-.++++.||-|..-+ +.... ..++.++-. ++ .+++.|
T Consensus 2 ~vSVIi~~yN~-~~~l~~~l~sl~~~~~~-~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~----~~--~G~~~A 73 (248)
T PRK10063 2 LLSVITVAFRN-LEGIVKTHASLRHLAQD-PGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE----PD--NGIYDA 73 (248)
T ss_pred eEEEEEEeCCC-HHHHHHHHHHHHHHHhC-CCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC----CC--CCHHHH
Confidence 45565677654 44566666554332221 1236778777543211 11110 112333321 22 367889
Q ss_pred hhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhh
Q psy11724 215 LQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNF 252 (355)
Q Consensus 215 LqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~f 252 (355)
++.+.+. ..++||++||.|.++.++.+.-+..+
T Consensus 74 ~N~Gi~~-----a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 74 MNKGIAM-----AQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHHHH-----cCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 9999973 35799999998888887765444333
No 57
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=90.19 E-value=1.4 Score=34.54 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHHhhhcCcccEEEEEEecCCCC-----CCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCC
Q psy11724 164 MARCNEAGLENYIIEVVTDKPVG-----LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEE 238 (355)
Q Consensus 164 ~~~~~~~gL~nf~V~VVtDk~i~-----L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDED 238 (355)
+.++...|..++ .|+.+...+ +...+.++++..+..|+.. ..+..+++.+.+ ...+.+|++|+|-|
T Consensus 11 l~~~~~lG~d~i--~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~---~~~~~~~~~~~~----~~~~~dWvl~~D~D 81 (97)
T PF13704_consen 11 LAHHLALGVDHI--YIYDDGSTDGTREILRALPGVGIIRWVDPYRDE---RRQRAWRNALIE----RAFDADWVLFLDAD 81 (97)
T ss_pred HHHHHHcCCCEE--EEEECCCCccHHHHHHhCCCcEEEEeCCCccch---HHHHHHHHHHHH----hCCCCCEEEEEeee
Confidence 345556777754 444443322 3455668888888776442 333445555554 34688999999999
Q ss_pred cccCch
Q psy11724 239 TLLTEN 244 (355)
Q Consensus 239 Tll~ed 244 (355)
-.+...
T Consensus 82 Efl~~~ 87 (97)
T PF13704_consen 82 EFLVPP 87 (97)
T ss_pred EEEecC
Confidence 886433
No 58
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.15 E-value=8.7 Score=29.31 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=53.7
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccch
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFK 211 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~K 211 (355)
+.+.|.++|.... +.+.+++.+..++.. +++++.||-|..-+ +.. ..-+....... + ..++
T Consensus 3 ~~~siiip~~n~~-~~l~~~l~s~~~q~~----~~~eiivvddgs~d~t~~~~~~~~~-~~~~~~~~~~~---~--~~g~ 71 (291)
T COG0463 3 PKVSVVIPTYNEE-EYLPEALESLLNQTY----KDFEIIVVDDGSTDGTTEIAIEYGA-KDVRVIRLINE---R--NGGL 71 (291)
T ss_pred ccEEEEEeccchh-hhHHHHHHHHHhhhh----cceEEEEEeCCCCCChHHHHHHHhh-hcceEEEeecc---c--CCCh
Confidence 4566766777654 667777766555333 34776666554322 111 00012222111 2 4667
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcccCchhhhh
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRG 248 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~g 248 (355)
+.|++.+.+. .+. +|+.++|.|.. ..+.+..
T Consensus 72 ~~~~~~~~~~----~~~-~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 72 GAARNAGLEY----ARG-DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred HHHHHhhHHh----ccC-CEEEEEccCCC-CCHHHHH
Confidence 7888888773 333 99999999999 8877766
No 59
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=82.85 E-value=3.6 Score=41.91 Aligned_cols=129 Identities=20% Similarity=0.282 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccC---------
Q psy11724 135 SPLLAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTK--------- 205 (355)
Q Consensus 135 ~p~la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk--------- 205 (355)
.+++..-|+|+|.|-.+. .--+.-. ..+..|++.+|+|.+-.= .+.+|+.|..+
T Consensus 6 ~~~~~~evdIVi~TI~~~--~fL~~~r--------~~l~~~h~iiV~d~D~~~-------~~~~~~G~d~~vy~r~d~~~ 68 (346)
T PLN03180 6 APLLKDELDIVIPTIRNL--DFLEMWR--------PFFQPYHLIIVQDGDPSK-------EIKVPEGFDYELYNRNDINR 68 (346)
T ss_pred CCCCCCcceEEEeccCch--hHHHHHH--------HhcCcccEEEEecCCccc-------ceeccCCCceeecCHHHHHh
Confidence 455777899988886651 2212221 335677888888733221 13344433322
Q ss_pred -cc-----ccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhh
Q psy11724 206 -SG-----ALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTL 279 (355)
Q Consensus 206 -~G-----A~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttl 279 (355)
-| --||+.|-.++=- ..++.+.|+.+|||++.-.|-=-..+||.+. |+.+.. +. ....|+-++
T Consensus 69 ~Lg~~~~~Ip~~~~a~R~fGy----L~s~~~yivsiDDD~~Pa~d~~g~~i~~~~q---H~~NL~-~p---stp~~fNtL 137 (346)
T PLN03180 69 ILGPKASCISFKDSACRCFGY----LVSKKKYIFTIDDDCFVAKDPSGKLINALEQ---HIKNLL-SP---STPFFFNTL 137 (346)
T ss_pred hhcccccccccCcccchhhhh----eeecceEEEEECCCCCCCCCCccccccHHHH---HHHhcC-CC---CCCceeecc
Confidence 11 1233333333322 5668999999999999865521112244432 222222 32 346677789
Q ss_pred hceeecccchhh
Q psy11724 280 ADSFRVADDMGK 291 (355)
Q Consensus 280 aD~iRv~DDm~r 291 (355)
-|.+|.+.|+-|
T Consensus 138 Ydp~r~g~~fvR 149 (346)
T PLN03180 138 YDPYREGADFVR 149 (346)
T ss_pred cccCccCCcccC
Confidence 999999999874
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=82.75 E-value=34 Score=32.51 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=67.8
Q ss_pred ccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhh------c
Q psy11724 208 ALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLA------D 281 (355)
Q Consensus 208 A~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttla------D 281 (355)
|-+-.++..+|... .++|++.|+.||.++.+++...++.+++-+....-|...++. .....+.... .
T Consensus 70 agg~n~g~~~a~~~------~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 142 (305)
T COG1216 70 AGGFNRGIKYALAK------GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNY-DESLYIDRRGGESDGLT 142 (305)
T ss_pred hhhhhHHHHHHhcC------CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecC-CCCcchheecccccccc
Confidence 45545666666652 233999999999999999999999998655554444444321 1112211111 0
Q ss_pred eeecccchhhHHHhhhccCcceee-ecCceEEEeccccccccc-cc------chhhhhhhhcCCCCCeeeec
Q psy11724 282 SFRVADDMGKLRLQFSLFHKPLLS-WKGSYVVTQLKTSKKRSK-SV------QKRSKYRQAQQPSQPIVLHP 345 (355)
Q Consensus 282 ~iRv~DDm~r~rfq~~~~~rPlfG-~HGs~LvVrg~vE~~VgW-D~------~~~~~~~~~~~~~~~~~~~~ 345 (355)
..+..........-+.- .-.+.+ .-|..++++.++-++||- |- ++.---+.+.+-..|++.-|
T Consensus 143 ~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p 213 (305)
T COG1216 143 GGWRASPLLEIAPDLSS-YLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVP 213 (305)
T ss_pred ccceecccccccccccc-hhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEee
Confidence 01111111000000000 001222 568889999999999984 32 23333344555554554433
No 61
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=80.82 E-value=1 Score=42.72 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=22.4
Q ss_pred ccCCCceEEEecCCcccCchhhhhhhhhh
Q psy11724 225 ILSGSDWVVHLDEETLLTENSIRGVLNFV 253 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTll~edsv~gIl~fi 253 (355)
+..+.+|.++.||||++..+.++..|.-.
T Consensus 83 ~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~ 111 (252)
T PF02434_consen 83 LNSDKDWFCFADDDTYVNVENLRRLLSKY 111 (252)
T ss_dssp HHHT-SEEEEEETTEEE-HHHHHHHHTTS
T ss_pred hcCCceEEEEEeCCceecHHHHHHHHhhC
Confidence 34566999999999999999988877654
No 62
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=77.48 E-value=2.9 Score=42.54 Aligned_cols=108 Identities=22% Similarity=0.345 Sum_probs=65.1
Q ss_pred HHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccC----------cc----ccchhhhhhHHHHhcccccCCCc
Q psy11724 165 ARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTK----------SG----ALFKARALQYCLEDNVNILSGSD 230 (355)
Q Consensus 165 ~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk----------~G----A~~KARALqYa~e~~vn~~~~dd 230 (355)
+.| |.-+..|++.||-|.+.. .++=||..|..+ -| .-||+.|-.++=- ..++.+
T Consensus 26 ~~w-r~~~~~~hliiv~d~~~~-------~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a~R~fGy----L~s~~~ 93 (348)
T PF03214_consen 26 EEW-RPFFSPYHLIIVQDPDPN-------EEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDACRNFGY----LVSKKD 93 (348)
T ss_pred HHH-HHhhcceeEEEEeCCCcc-------ccccCCcccceeeecHhhHHhhcCCcccccccccchhhhHh----hhcccc
Confidence 344 367778999999986533 112234433221 11 3566666555543 677889
Q ss_pred eEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccchhh
Q psy11724 231 WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGK 291 (355)
Q Consensus 231 WVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DDm~r 291 (355)
.|+.+|||++.-.|..-.-++-++. | ++=+.+. ....|+-++-|-+|.+.|+-|
T Consensus 94 yivsiDDD~~P~~D~~g~~~~~v~q---h-~~~~~~~---st~~~fNtLyd~~~e~~~f~R 147 (348)
T PF03214_consen 94 YIVSIDDDCLPAKDDFGTHIDAVAQ---H-VENLSTP---STPFFFNTLYDPYREGADFPR 147 (348)
T ss_pred eEEEEccccccccCCccceehhhhc---c-ceeeecc---CchhhhhhhcccccccCcccC
Confidence 9999999999865543222222221 1 1222232 345677799999999999764
No 63
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.27 E-value=1.2e+02 Score=33.68 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=68.3
Q ss_pred EEEEEecCchHHHHHHHHHHhHHHhhh-cCcccEEEEEEecCCCC---CC-----------CCCCceEEEecCCCcc-Cc
Q psy11724 143 CIRIVTRGDYAQLVKDNVARNMARCNE-AGLENYIIEVVTDKPVG---LP-----------IHRRIREVVVPKSYKT-KS 206 (355)
Q Consensus 143 ~irVVTrGd~p~lVr~sV~~~~~~~~~-~gL~nf~V~VVtDk~i~---L~-----------~~~~vrviVVP~eY~t-k~ 206 (355)
-|..+|=-..+.+|=-.+.-.-+-+++ .-+|+|.+-|++|...+ +. -....|+. ||. +.
T Consensus 147 AilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~if-----YRrRr~ 221 (736)
T COG2943 147 AILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIF-----YRRRRR 221 (736)
T ss_pred eEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCcee-----eehHhh
Confidence 444566555555544333322122223 56889999999986544 21 01112332 222 12
Q ss_pred cccchhhhh-hHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEe
Q psy11724 207 GALFKARAL-QYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLIT 266 (355)
Q Consensus 207 GA~~KARAL-qYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~ 266 (355)
..+-||.-+ +||++ --+..+..+.||-||+++.|++-....-.|... +.|+|-
T Consensus 222 n~~RKaGNIaDfcrR----wG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P---~aGlIQ 275 (736)
T COG2943 222 NVKRKAGNIADFCRR----WGSAYSYMLVLDADSVMTGDCLVRLVRLMEANP---DAGLIQ 275 (736)
T ss_pred hhcccccCHHHHHHH----hCcccceEEEeecccccCchHHHHHHHHHhhCC---CCceee
Confidence 245555544 57776 556788999999999999999999999998643 457765
No 64
>PLN03153 hypothetical protein; Provisional
Probab=65.65 E-value=7.5 Score=41.69 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.0
Q ss_pred ccCCCceEEEecCCcccCchhhhhhhhhh
Q psy11724 225 ILSGSDWVVHLDEETLLTENSIRGVLNFV 253 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTll~edsv~gIl~fi 253 (355)
...+-+|++++||||++-.+.+...|+-.
T Consensus 207 ~~pd~kWfVf~DDDTyf~~~NLv~~Ls~Y 235 (537)
T PLN03153 207 GLPDVRWFVLGDDDTIFNADNLVAVLSKY 235 (537)
T ss_pred hCCCCCEEEEecCCccccHHHHHHHHhhc
Confidence 56789999999999998888877776544
No 65
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=60.80 E-value=1.2e+02 Score=28.10 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=63.2
Q ss_pred ccchhhhhhHHHHhcccccCCCceEEEecCCccc-CchhhhhhhhhhhcCCcccc-eeEEecC--Ccchhhhhhhh----
Q psy11724 208 ALFKARALQYCLEDNVNILSGSDWVVHLDEETLL-TENSIRGVLNFVLDGKHHFG-QGLITYA--NEEVVNWVTTL---- 279 (355)
Q Consensus 208 A~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll-~edsv~gIl~fi~~g~~~~G-QGiI~Y~--n~~~~nwlttl---- 279 (355)
+..-++|+|.|.+. ++.++.+||.+|+.+ +++.+..+++..+..+ .+| -|++--. .....-|-...
T Consensus 39 ~~s~~~~yN~a~~~-----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~-~~G~iGvaG~~~~~~~~~~w~~~~~~g~ 112 (217)
T PF13712_consen 39 AKSMAAAYNEAMEK-----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP-NIGMIGVAGSKRLPPNGVWWESPNKVGK 112 (217)
T ss_dssp -S-TTTHHHHHGGG-------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T-TEEEEESEEEESS-S-TTS---EEEEEE
T ss_pred CcCHHHHHHHHHHh-----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC-CccEEEeecCCcCCCCCccccccccccc
Confidence 45556899999983 677899999999997 5677888999884323 322 1332211 11122232110
Q ss_pred -hceeeccc--c---hhhHHHhh--hccCcceeeecCceEEEecccc---c--ccccccchhhhhhhhcCCCCCeee
Q psy11724 280 -ADSFRVAD--D---MGKLRLQF--SLFHKPLLSWKGSYVVTQLKTS---K--KRSKSVQKRSKYRQAQQPSQPIVL 343 (355)
Q Consensus 280 -aD~iRv~D--D---m~r~rfq~--~~~~rPlfG~HGs~LvVrg~vE---~--~VgWD~~~~~~~~~~~~~~~~~~~ 343 (355)
....|..+ . .+..+++. ..--.|+-.+=|-+|++|.++. . --||.+-..+--+++.+-...++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~ 189 (217)
T PF13712_consen 113 VREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVPRFDEDLFTGFHFYDVDQCLEARRAGYRVVV 189 (217)
T ss_dssp TTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB-----SS--SSSSHHHHHHHHHHHTT-EEEE
T ss_pred ccccccccccccccccccccccccccCCceeEEEecceEEEEEcccCCCCccccCCcchHHHHHHHHHHHhCCEEEe
Confidence 11122111 1 11111111 1134678889999999999998 1 256655555555555554444433
No 66
>KOG2246|consensus
Probab=55.65 E-value=14 Score=37.48 Aligned_cols=43 Identities=30% Similarity=0.527 Sum_probs=36.3
Q ss_pred ccchhh-hhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhh
Q psy11724 208 ALFKAR-ALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFV 253 (355)
Q Consensus 208 A~~KAR-ALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi 253 (355)
+-.|+| |.+|.+++ +..+-||.+-=||||.+--|-++..|+-.
T Consensus 150 ~~~ktr~~~~yv~~~---~~~~~dWf~~aDDDTy~i~eNLr~~L~~y 193 (364)
T KOG2246|consen 150 LWRKTRIAFKYVYDH---ILKDYDWFLKADDDTYFIMENLRYVLSKY 193 (364)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCeEEeccCCeEEeHHHHHHHHhhc
Confidence 677887 78888874 89999999999999998888888877654
No 67
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=54.54 E-value=48 Score=33.36 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=70.4
Q ss_pred EEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEE-----ecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHH
Q psy11724 144 IRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVV-----TDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYC 218 (355)
Q Consensus 144 irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VV-----tDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa 218 (355)
+...|+|.+. |.+|+..+. +-.+||.|-.. +|+-..++-+.++--+.+.+ .|| = -||
T Consensus 44 Lla~~VG~kq---k~~vd~~v~----Kf~~nF~i~LfhYDg~vd~w~~~~ws~~aiHv~~~k--qtK--w-------w~a 105 (294)
T PF05212_consen 44 LLAMTVGIKQ---KDNVDAIVK----KFSDNFDIMLFHYDGRVDEWDDFEWSDRAIHVSARK--QTK--W-------WFA 105 (294)
T ss_pred EEEEEecHHH---HhhhhHHHh----hhccCceEEEEEecCCcCchhhcccccceEEEEecc--ceE--E-------eeh
Confidence 3379999865 445543333 33568866554 34445565333332322222 333 2 223
Q ss_pred HHh-cccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCC
Q psy11724 219 LED-NVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYAN 269 (355)
Q Consensus 219 ~e~-~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n 269 (355)
.+. .-.++...|+|...|||-.++..++..-++.+++-+-.+.|-.+...+
T Consensus 106 krfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~ 157 (294)
T PF05212_consen 106 KRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDS 157 (294)
T ss_pred hhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCC
Confidence 221 225889999999999999999999999999999888899999888543
No 68
>PLN02893 Cellulose synthase-like protein
Probab=53.97 E-value=57 Score=36.50 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=64.0
Q ss_pred EEEEecCCCC--CCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCccc-Cchhhhhhhhhh
Q psy11724 177 IEVVTDKPVG--LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLL-TENSIRGVLNFV 253 (355)
Q Consensus 177 V~VVtDk~i~--L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll-~edsv~gIl~fi 253 (355)
|.|+.|.+.+ ..+...=+.+.|=||=|..-.--+||.||+.++++. +..++.+.|+-+|-|... +.++++.-+-|.
T Consensus 246 vqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS-~~~TngpfIl~lDcD~y~n~p~~l~~amcff 324 (734)
T PLN02893 246 IQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVS-ATMTNAPIILTLDCDMYSNDPQTPLRALCYL 324 (734)
T ss_pred eeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhh-cccCCCCEEEEecCCcCCCchhHHHHHHHHh
Confidence 7788876533 233344478888888443334689999999999863 356899999999999997 568899888888
Q ss_pred hcCCcccceeEEecC
Q psy11724 254 LDGKHHFGQGLITYA 268 (355)
Q Consensus 254 ~~g~~~~GQGiI~Y~ 268 (355)
.+.+..=--|.+-+|
T Consensus 325 ~Dp~~~~~vafVQfP 339 (734)
T PLN02893 325 LDPSMDPKLGYVQFP 339 (734)
T ss_pred cCCCcCCceEEEeCc
Confidence 653322223455554
No 69
>PLN03181 glycosyltransferase; Provisional
Probab=46.56 E-value=75 Score=33.76 Aligned_cols=68 Identities=10% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEE
Q psy11724 154 QLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVV 233 (355)
Q Consensus 154 ~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVv 233 (355)
..+.+.+.--++||++.|.+.|...+..++. .|. .=.|-=|++=|.. -.-+-+|+-
T Consensus 148 ~~LlriikNR~dYArrHGY~lf~~~a~Ld~~-------------~p~-------~WaKipalRaAM~----a~PeAEWfW 203 (453)
T PLN03181 148 HLLLRFFKNKVDYCRIHGYDIFYNNALLHPK-------------MNS-------YWAKLPVVRAAML----AHPEAEWIW 203 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeccccCcc-------------Cch-------hhhHHHHHHHHHH----HCCCceEEE
Confidence 4567777767789999998866444422110 122 3345556665655 234689999
Q ss_pred EecCCcccCchh
Q psy11724 234 HLDEETLLTENS 245 (355)
Q Consensus 234 HLDEDTll~eds 245 (355)
+||.|+++++-+
T Consensus 204 WLDsDALIMNp~ 215 (453)
T PLN03181 204 WVDSDAVFTDMD 215 (453)
T ss_pred EecCCceeecCC
Confidence 999999976543
No 70
>KOG2387|consensus
Probab=34.72 E-value=1e+02 Score=33.40 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=27.9
Q ss_pred CceEEEecCCCccCccccchhhhhhHHHHhcc
Q psy11724 192 RIREVVVPKSYKTKSGALFKARALQYCLEDNV 223 (355)
Q Consensus 192 ~vrviVVP~eY~tk~GA~~KARALqYa~e~~v 223 (355)
.+.-|+||-.|-.. |..+|-.|.+||||+++
T Consensus 363 ~adGilvPGGFG~R-GveG~i~Aak~ARen~i 393 (585)
T KOG2387|consen 363 SADGILVPGGFGDR-GVEGKILAAKWARENKI 393 (585)
T ss_pred cCCeEEeCCccccc-chhHHHHHHHHHHhcCC
Confidence 38889999999988 99999999999999754
No 71
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=32.73 E-value=31 Score=37.09 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=27.2
Q ss_pred ceEEEecCCCccCccccchhhhhhHHHHhcc
Q psy11724 193 IREVVVPKSYKTKSGALFKARALQYCLEDNV 223 (355)
Q Consensus 193 vrviVVP~eY~tk~GA~~KARALqYa~e~~v 223 (355)
+.=++||-.|-.+ |.-+|-+|.+||||+++
T Consensus 344 ~dgIlVPGGFG~R-G~eGkI~Ai~yAREn~i 373 (533)
T COG0504 344 VDGILVPGGFGYR-GVEGKIAAIRYARENNI 373 (533)
T ss_pred CCEEEeCCCCCcC-chHHHHHHHHHHHhcCC
Confidence 7889999999987 89999999999999744
No 72
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=31.95 E-value=2.1e+02 Score=25.10 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.0
Q ss_pred ccCCCceEEEecCCcccCc
Q psy11724 225 ILSGSDWVVHLDEETLLTE 243 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTll~e 243 (355)
.+.+-|.|++||.|+++..
T Consensus 95 ll~~~drilyLD~D~lv~~ 113 (250)
T PF01501_consen 95 LLPDYDRILYLDADTLVLG 113 (250)
T ss_dssp HSTTSSEEEEE-TTEEESS
T ss_pred HHhhcCeEEEEcCCeeeec
Confidence 4478899999999999854
No 73
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=31.36 E-value=1e+02 Score=27.54 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=52.4
Q ss_pred cEEEEE-----EecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC------------------C---CCCCCce
Q psy11724 141 FICIRI-----VTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG------------------L---PIHRRIR 194 (355)
Q Consensus 141 ~I~irV-----VTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~------------------L---~~~~~vr 194 (355)
||.|.| +|+|+-.+++++++.++ +-+.|+-+...++|.-.... | .....-+
T Consensus 18 Yiaf~vise~~i~~~~l~~~I~~s~l~l---lG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~~~~g~r 94 (124)
T COG1369 18 YIAFEVISEEEITRGELVRLIRRSLLSL---LGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAREVNGKR 94 (124)
T ss_pred EEEEEEeccccCChhHHHHHHHHHHHHH---cCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHHHhCCce
Confidence 777766 78888888898888754 55778888877777643211 1 1234578
Q ss_pred EEEecCCCccCccccchhhhhhHHHH
Q psy11724 195 EVVVPKSYKTKSGALFKARALQYCLE 220 (355)
Q Consensus 195 viVVP~eY~tk~GA~~KARALqYa~e 220 (355)
++++|.. .||+.= +|-++|.+
T Consensus 95 v~I~~lg---vSGTIK--ka~~~~l~ 115 (124)
T COG1369 95 VIIVVLG---VSGTIK--KAKRKFLR 115 (124)
T ss_pred EEEEEee---ccccHH--HHHHHHhc
Confidence 9999998 889887 67788887
No 74
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=31.35 E-value=38 Score=25.90 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=24.8
Q ss_pred ccCCCceEEEecCCcc----cCchhhhhhhhhhhcCCc
Q psy11724 225 ILSGSDWVVHLDEETL----LTENSIRGVLNFVLDGKH 258 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTl----l~edsv~gIl~fi~~g~~ 258 (355)
|..++.|+ |||.||. ++.+.+-+..+|+.+|..
T Consensus 9 Y~dg~~~~-FMd~etyeQ~~i~~~~igd~~~~L~e~~~ 45 (61)
T cd04470 9 YKDGDNYV-FMDTETYEQIELPKEALGDAAKFLKEGME 45 (61)
T ss_pred EeCCCEEE-EeCCCCceEEEECHHHhhhHHhhCcCCCE
Confidence 44555555 9999987 788888888999987653
No 75
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=30.70 E-value=1.1e+02 Score=27.99 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.3
Q ss_pred ccCCCceEEEecCCcccCc
Q psy11724 225 ILSGSDWVVHLDEETLLTE 243 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTll~e 243 (355)
.+.+-+.|++||-|+++..
T Consensus 92 ll~~~~rvlylD~D~lv~~ 110 (248)
T cd04194 92 LLPDYDKVLYLDADIIVLG 110 (248)
T ss_pred HhcccCEEEEEeCCEEecC
Confidence 4446899999999998754
No 76
>KOG4179|consensus
Probab=30.43 E-value=42 Score=35.85 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=28.3
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCccc-Cchhhhhhhhh
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLL-TENSIRGVLNF 252 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll-~edsv~gIl~f 252 (355)
|--|++|+++ .+.|.|+|+|+|.++ ..+|+.-.++-
T Consensus 98 Keea~~~~r~------~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 98 KEEALNWARS------GWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred HHHHHHHHHh------hhcceeEEeehhheeeCCchHhHHHhc
Confidence 6789999998 367899999999997 55676655544
No 77
>PRK06186 hypothetical protein; Validated
Probab=28.83 E-value=1.1e+02 Score=29.52 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=26.0
Q ss_pred CceEEEecCCCccCccccchhhhhhHHHHhc
Q psy11724 192 RIREVVVPKSYKTKSGALFKARALQYCLEDN 222 (355)
Q Consensus 192 ~vrviVVP~eY~tk~GA~~KARALqYa~e~~ 222 (355)
.+.=|+||..|-.+ |..+|=+|++||||++
T Consensus 53 ~~dgilvpgGfg~r-g~~Gki~ai~~Are~~ 82 (229)
T PRK06186 53 GFDGIWCVPGSPYR-NDDGALTAIRFARENG 82 (229)
T ss_pred hCCeeEeCCCCCcc-cHhHHHHHHHHHHHcC
Confidence 46778899999876 8999999999999984
No 78
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=28.72 E-value=37 Score=30.15 Aligned_cols=37 Identities=11% Similarity=0.366 Sum_probs=29.3
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhh
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFV 253 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi 253 (355)
-+++|+.+ .-..-++|+..|||+.++.+.+...+.-.
T Consensus 69 ~~~~w~~~----~c~~~~~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 69 AGLKWASK----HCPNAKYVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred HHHHHHHh----hCCchhheeecCcEEEEehHHhhhhhhhc
Confidence 47899987 33458999999999999988876666554
No 79
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=28.07 E-value=1.5e+02 Score=30.59 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCC-CCCceEEEecCCCccCccccchhhhhhHHHHhcccccCC
Q psy11724 150 GDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPI-HRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSG 228 (355)
Q Consensus 150 Gd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~-~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ 228 (355)
|.-++.|++.+.. +++....+|.|.-|+.+.+.-.. ......+|.|-. +++.||+.
T Consensus 10 G~~~~sv~~~~~~----Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG-----------~d~~y~~~-------- 66 (367)
T PF09825_consen 10 GTSPESVRHTLES----LRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGG-----------ADLPYCRS-------- 66 (367)
T ss_pred CCCHHHHHHHHHH----HHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCC-----------cchHHHHh--------
Confidence 3445667766653 33344458888888876654322 245789999943 67888865
Q ss_pred CceEEEecCCcccCchhhhhhhhhhhcCCcccc
Q psy11724 229 SDWVVHLDEETLLTENSIRGVLNFVLDGKHHFG 261 (355)
Q Consensus 229 ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~G 261 (355)
+++.-.+.|-+|+++|+..+|
T Consensus 67 ------------l~~~g~~~Ir~fV~~GG~YlG 87 (367)
T PF09825_consen 67 ------------LNGEGNRRIRQFVENGGGYLG 87 (367)
T ss_pred ------------hChHHHHHHHHHHHcCCcEEE
Confidence 234467778899988776644
No 80
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=27.51 E-value=5.4e+02 Score=25.83 Aligned_cols=96 Identities=18% Similarity=0.336 Sum_probs=71.4
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccE--EEEEEecCCCCCC-----CCCCceEEEecCCCccCccccchh
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENY--IIEVVTDKPVGLP-----IHRRIREVVVPKSYKTKSGALFKA 212 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf--~V~VVtDk~i~L~-----~~~~vrviVVP~eY~tk~GA~~KA 212 (355)
-.|-+.+...|.|-.-+++=+.++ ++.-|.++ ++-|-||.+..+| ..+.++++-|+++-+-.+-++..-
T Consensus 34 ~tIgl~vfatGkY~~f~~~F~~SA----Ek~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm 109 (271)
T cd02515 34 ITIGLTVFAVGKYTEFLERFLESA----EKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRM 109 (271)
T ss_pred CEEEEEEEEeccHHHHHHHHHHHH----HHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCcHHHHHHH
Confidence 367787889999988887777543 34334444 5788999887655 357799999999988877777766
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCccc
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEETLL 241 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDTll 241 (355)
..+.-+.+. -...+-|.+.++|-|+..
T Consensus 110 ~~~~~~~~~--~~~~e~DYlF~~dvd~~F 136 (271)
T cd02515 110 KTLADHIAD--RIGHEVDYLFCMDVDMVF 136 (271)
T ss_pred HHHHHHHHH--hhcccCCEEEEeeCCceE
Confidence 666666553 256789999999999984
No 81
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.36 E-value=3.9e+02 Score=26.67 Aligned_cols=113 Identities=17% Similarity=0.280 Sum_probs=65.0
Q ss_pred CCCCcEEEEEEecCchHHH-HHHHHHHhHHHhhhcCcccEEEEEE-ecCCCC-CC--------------CCCCceEEEec
Q psy11724 137 LLAPFICIRIVTRGDYAQL-VKDNVARNMARCNEAGLENYIIEVV-TDKPVG-LP--------------IHRRIREVVVP 199 (355)
Q Consensus 137 ~la~~I~irVVTrGd~p~l-Vr~sV~~~~~~~~~~gL~nf~V~VV-tDk~i~-L~--------------~~~~vrviVVP 199 (355)
.....+||=|+|+....+. +..++.+.++.+-+.-.++..|.|. +|.+-. .+ .+..+.+|..|
T Consensus 49 ~~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p 128 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPP 128 (297)
T ss_pred CCCCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecc
Confidence 3344589999887743333 5566655555443333445555553 332211 11 12345667677
Q ss_pred CCCccCc------------cccchhh-------hhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC
Q psy11724 200 KSYKTKS------------GALFKAR-------ALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG 256 (355)
Q Consensus 200 ~eY~tk~------------GA~~KAR-------ALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g 256 (355)
.+|-..- +..+..+ .++||.. ..+|++-|.||.+..++.+..|.+++..-
T Consensus 129 ~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~-------~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 129 PSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQN-------LGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred cccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHh-------cCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 7644321 1112222 3445543 46799999999999999999999999743
No 82
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=26.57 E-value=69 Score=31.67 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=23.9
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcccCchhh
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETLLTENSI 246 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv 246 (355)
|||=+|.+-. ..--+..||+.||-|-.-++.++
T Consensus 128 AraRN~LL~~--aL~p~~swVlWlDaDIv~~P~~l 160 (269)
T PF03452_consen 128 ARARNFLLSS--ALGPWHSWVLWLDADIVETPPTL 160 (269)
T ss_pred HHHHHHHHHh--hcCCcccEEEEEecCcccCChHH
Confidence 4555777663 23349999999999999766664
No 83
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=26.25 E-value=54 Score=31.01 Aligned_cols=72 Identities=17% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEE
Q psy11724 154 QLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVV 233 (355)
Q Consensus 154 ~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVv 233 (355)
+.+++++.--.+||.+.|-. +.++......-++ ..++=.|-=||+=+.+. + -+.+||.
T Consensus 24 ~~~~~~~~Nr~~Ya~~HgY~---~~~~~~~~~~~~~---------------~~~~W~K~~~lr~~m~~---~-P~~~wv~ 81 (239)
T PF05637_consen 24 SYLKKSIQNRVDYARRHGYD---LYYRNIQEYDDPE---------------RPGSWAKIPALRAAMKK---Y-PEAEWVW 81 (239)
T ss_dssp ---------HHHHHHHHT-E---EEEE-S--S--SH---------------HHHHHTHHHHHHHHHHH-----TT-SEEE
T ss_pred cccchhHHHHHHHHHhcCCE---EEEEChHHcCCCC---------------CChhhHHHHHHHHHHHh---C-CCCCEEE
Confidence 34666666556788887766 4443222211111 01123355566555542 2 3579999
Q ss_pred EecCCcccCchhhh
Q psy11724 234 HLDEETLLTENSIR 247 (355)
Q Consensus 234 HLDEDTll~edsv~ 247 (355)
+||.|+++.+-++.
T Consensus 82 ~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 82 WLDSDALIMNPDFS 95 (239)
T ss_dssp EE-TTEEE------
T ss_pred EEcCCeEEEecccc
Confidence 99999998765543
No 84
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=26.01 E-value=2.8e+02 Score=25.01 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=45.6
Q ss_pred EEEEecCchHHH-HHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHHHHhc
Q psy11724 144 IRIVTRGDYAQL-VKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDN 222 (355)
Q Consensus 144 irVVTrGd~p~l-Vr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~ 222 (355)
|+|+++|-..+. +++.+.+ |..+ +. ....+.++.||.+=..+++..-+..+.|-.+-.
T Consensus 3 i~i~~vGk~k~~~~~~~~~e---Y~kR--l~---------------~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il- 61 (155)
T PF02590_consen 3 IRIIAVGKLKEKFLKELIEE---YLKR--LS---------------RYAKLEIIELKEEKIAKAQSIEKIKEKEGERIL- 61 (155)
T ss_dssp EEEEEESSS-SHHHHHHHHH---HHHH--HC---------------TTSEEEEEEE------TCHHHHHHHHHHHHHHH-
T ss_pred EEEEEEeccCcHHHHHHHHH---HHHH--cC---------------ccCceeEEEeccccccccccHHHHHHHHHHHHH-
Confidence 567777855443 6777764 4443 11 111234444555522222334444444444332
Q ss_pred ccccCCCceEEEecCCcc-cCchhhhhhhhhhh
Q psy11724 223 VNILSGSDWVVHLDEETL-LTENSIRGVLNFVL 254 (355)
Q Consensus 223 vn~~~~ddWVvHLDEDTl-l~edsv~gIl~fi~ 254 (355)
....++++++-||++-- ++.+.+...++-..
T Consensus 62 -~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~ 93 (155)
T PF02590_consen 62 -KKIPPNDYVILLDERGKQLSSEEFAKKLERWM 93 (155)
T ss_dssp -CTSHTTSEEEEE-TTSEE--HHHHHHHHHHHH
T ss_pred -hhccCCCEEEEEcCCCccCChHHHHHHHHHHH
Confidence 46678999999999987 78877777666654
No 85
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=25.37 E-value=79 Score=30.75 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=27.1
Q ss_pred hHHHHhcc--cccCCCceEEEecCCccc-Cchhhhhhhhhhhc
Q psy11724 216 QYCLEDNV--NILSGSDWVVHLDEETLL-TENSIRGVLNFVLD 255 (355)
Q Consensus 216 qYa~e~~v--n~~~~ddWVvHLDEDTll-~edsv~gIl~fi~~ 255 (355)
.++|++-+ -++...+||+|||-|..+ +++- .|-||+..
T Consensus 27 ~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~--~iEefid~ 67 (222)
T PF03314_consen 27 KFFRRHCVVAKILPEYDWVLFLDADIGVVNPNR--RIEEFIDE 67 (222)
T ss_pred HHHHHHHHHHHHhccCCEEEEEcCCceeecCcc--cHHHhcCC
Confidence 36777633 378889999999999985 5443 35677753
No 86
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=24.08 E-value=8.7e+02 Score=25.65 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=108.6
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-------------CC-CCCCceEEEecCCCccC
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-------------LP-IHRRIREVVVPKSYKTK 205 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-------------L~-~~~~vrviVVP~eY~tk 205 (355)
..|-|.|+-.|.+.+.+++=+..-.+.|.+..=..+.+.|+--++.+ +. ..+..++-+++..
T Consensus 247 ~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~---- 322 (499)
T PF05679_consen 247 TRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK---- 322 (499)
T ss_pred CEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec----
Confidence 45677677777756677776665555565543334444443322111 11 2344555556554
Q ss_pred ccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccce-eEEecCCcchhhhhhhhhceee
Q psy11724 206 SGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQ-GLITYANEEVVNWVTTLADSFR 284 (355)
Q Consensus 206 ~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQ-GiI~Y~n~~~~nwlttlaD~iR 284 (355)
+|.--+++||+-+.+ ....|+=+.+.|=|..++.+.+..|=-....|+-.|-= .---|++..+-.-.....|.+.
T Consensus 323 ~~~fsr~~~Ld~g~~----~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs~y~p~~~~~~~~~~~~~~~ 398 (499)
T PF05679_consen 323 TGEFSRGAALDVGAK----KFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFSQYNPDIVYAGKPPEPDQFD 398 (499)
T ss_pred CCCccHHHHHHhhcc----cCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeeccccCCcccccCCCCccccCc
Confidence 345667799998887 45789999999999999999997776555544422100 0011222111111344567788
Q ss_pred cccchhhHHHhhhccCcceeee-cCceEEE--ecccccccccccchhhhhhhhcCCC
Q psy11724 285 VADDMGKLRLQFSLFHKPLLSW-KGSYVVT--QLKTSKKRSKSVQKRSKYRQAQQPS 338 (355)
Q Consensus 285 v~DDm~r~rfq~~~~~rPlfG~-HGs~LvV--rg~vE~~VgWD~~~~~~~~~~~~~~ 338 (355)
+..+-|.++-+ +-=++++ +.-|+-+ .+.-+..-||-.++..-|+..-+-+
T Consensus 399 i~~~~G~w~~~----gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~ 451 (499)
T PF05679_consen 399 ISKDTGFWRRF----GFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSG 451 (499)
T ss_pred cCCCCCccccC----CCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCC
Confidence 88888866522 2223333 4556666 5556677889988876666544433
No 87
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=24.06 E-value=1.8e+02 Score=25.34 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHhcchhHHHHHHHhhhhhcc
Q psy11724 104 YLTFLPLPQVLFNFAGLVFYNA 125 (355)
Q Consensus 104 ~lw~L~lP~~l~~~~Gl~~~n~ 125 (355)
++.++.+|.+++.++|+..++.
T Consensus 16 li~~~~~P~i~~~~~~~a~~~~ 37 (164)
T TIGR03061 16 LIAIMLIPLLYGGLFLWAFWDP 37 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc
Confidence 5566778998888888877654
No 88
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=22.85 E-value=2e+02 Score=22.93 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEEecCc--hHHHHHHHHHHhHHHhhh
Q psy11724 136 PLLAPFICIRIVTRGD--YAQLVKDNVARNMARCNE 169 (355)
Q Consensus 136 p~la~~I~irVVTrGd--~p~lVr~sV~~~~~~~~~ 169 (355)
.++.+.+.++|-|+|+ -.+++++++....+.|..
T Consensus 37 HPl~~~i~l~Iqt~~~~~p~~~l~~a~~~l~~~~~~ 72 (77)
T PF13656_consen 37 HPLENKINLRIQTKGGITPIEALKKALEDLIKICEE 72 (77)
T ss_dssp ETTSSEEEEEEEESTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467899999999986 456688888877776654
No 89
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=20.92 E-value=5.6e+02 Score=22.30 Aligned_cols=104 Identities=11% Similarity=0.150 Sum_probs=54.9
Q ss_pred hhhhHHHHhcccccCCCceEEEecCCc-ccCchhhhhhhhhhhcCCcc--------cceeEE-ecCCcchhhhhhhhhce
Q psy11724 213 RALQYCLEDNVNILSGSDWVVHLDEET-LLTENSIRGVLNFVLDGKHH--------FGQGLI-TYANEEVVNWVTTLADS 282 (355)
Q Consensus 213 RALqYa~e~~vn~~~~ddWVvHLDEDT-ll~edsv~gIl~fi~~g~~~--------~GQGiI-~Y~n~~~~nwlttlaD~ 282 (355)
.++.-+.+. .+.+|++.++-|. +++.+.+..+++...+.+.. .|+-+. .|+ +..+..+.+.
T Consensus 78 ~~i~~~l~~-----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~Pl~~~~~----~~~~~~l~~~ 148 (193)
T PRK00317 78 AGILAGLKQ-----ARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAWAHDGGRLHPTFALYS----VALLPDLEAY 148 (193)
T ss_pred HHHHHHHHh-----cCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEEEeeCCcceeEEEEEe----HHHHHHHHHH
Confidence 345555552 2468999999888 68999999999865433221 122221 233 2333333333
Q ss_pred eecccchhhHHHhhhccCcceeeecCceEEEecccccccccccchhhhhhhhcC
Q psy11724 283 FRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRSKSVQKRSKYRQAQQ 336 (355)
Q Consensus 283 iRv~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~VgWD~~~~~~~~~~~~ 336 (355)
+. ..|.+ .+-.++..+ ...+.-+.+..+-.|.-|...|+++++
T Consensus 149 l~-~g~~~-~~~~l~~~~---------~~~v~~~~~~~~~~dinTped~~~~~~ 191 (193)
T PRK00317 149 LA-AGERK-VMAFYARHG---------GVAVDFSDPKDAFFNINTPEDLAQLEE 191 (193)
T ss_pred HH-cCCch-HHHHHHHCC---------cEEEeCCCCCCccCcCCCHHHHHHHHh
Confidence 31 22333 221222221 112222223456789999999988764
Done!