Query psy11724
Match_columns 355
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 17:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 98.2 1.7E-05 5.7E-10 82.9 13.5 171 138-326 138-338 (802)
2 2z86_A Chondroitin synthase; G 97.9 0.0002 6.8E-09 70.8 15.5 109 140-263 93-209 (625)
3 3bcv_A Putative glycosyltransf 97.9 0.00019 6.3E-09 61.0 12.0 103 140-260 5-116 (240)
4 1xhb_A Polypeptide N-acetylgal 97.8 0.00021 7E-09 68.4 13.0 199 136-349 25-255 (472)
5 2d7i_A Polypeptide N-acetylgal 97.7 0.00016 5.6E-09 72.2 11.1 197 139-349 111-335 (570)
6 2ffu_A Ppgalnact-2, polypeptid 97.7 0.00047 1.6E-08 66.9 13.2 200 136-349 62-287 (501)
7 1qg8_A Protein (spore coat pol 97.4 0.0011 3.8E-08 56.8 11.0 158 140-322 1-172 (255)
8 3ckj_A Putative uncharacterize 96.3 0.013 4.5E-07 54.0 8.9 114 140-266 48-171 (329)
9 4fix_A UDP-galactofuranosyl tr 96.2 0.036 1.2E-06 57.2 12.2 121 138-267 178-308 (657)
10 2z86_A Chondroitin synthase; G 95.8 0.052 1.8E-06 53.6 10.7 98 140-255 375-481 (625)
11 3f1y_A Mannosyl-3-phosphoglyce 95.2 0.068 2.3E-06 51.7 9.2 119 139-264 93-217 (387)
12 3l7i_A Teichoic acid biosynthe 94.4 0.0071 2.4E-07 61.8 0.0 97 141-254 3-109 (729)
13 2nxv_A ATP synthase subunits r 94.0 0.53 1.8E-05 41.5 11.2 40 211-255 62-101 (249)
14 2fy7_A Beta-1,4-galactosyltran 93.4 0.44 1.5E-05 44.2 10.0 83 139-245 64-146 (287)
15 2bo4_A Mannosylglycerate synth 87.2 2 6.8E-05 42.0 8.7 66 192-263 58-127 (397)
16 2j0a_A Beta-1,3-N-acetylglucos 55.6 8.2 0.00028 35.6 3.5 27 227-253 92-118 (280)
17 2d0j_A Galactosylgalactosylxyl 45.0 95 0.0032 29.0 8.9 150 140-297 3-175 (246)
18 3oam_A 3-deoxy-manno-octuloson 39.2 58 0.002 28.6 6.3 92 150-256 25-119 (252)
19 1ezi_A CMP-N-acetylneuraminic 37.3 52 0.0018 27.8 5.5 76 176-256 47-125 (228)
20 3k8d_A 3-deoxy-manno-octuloson 28.1 1.1E+02 0.0038 27.6 6.3 81 167-257 53-136 (264)
21 2w82_A ORF18, ARDA; DNA mimic, 27.0 21 0.00072 30.7 1.3 19 1-19 1-19 (165)
22 2p6w_A VP54, putative glycosyl 27.0 69 0.0024 29.7 4.7 68 156-245 22-89 (213)
23 3ug7_A Arsenical pump-driving 26.5 1.8E+02 0.0062 27.0 7.7 41 225-265 304-344 (349)
24 1xpp_A TA1416, DNA-directed RN 22.3 95 0.0032 25.8 4.3 35 135-169 56-91 (115)
25 2wee_A MOBA-related protein; u 21.7 3.2E+02 0.011 22.0 7.4 40 210-252 80-120 (197)
26 2pa8_L DNA-directed RNA polyme 21.0 1.5E+02 0.0052 23.3 5.1 35 135-169 46-82 (92)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=98.15 E-value=1.7e-05 Score=82.94 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=106.5
Q ss_pred CCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------------------C---CCCCCce
Q psy11724 138 LAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------------------L---PIHRRIR 194 (355)
Q Consensus 138 la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------------------L---~~~~~vr 194 (355)
-.|.|.+.|+|....++.+++++.+..++ +-.-.+++|.||.|...+ + ....+++
T Consensus 138 ~~P~VSViIPtyNe~~~lL~~~L~Sl~~q--~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~ 215 (802)
T 4hg6_A 138 ELPTVDILVPSYNEPADMLSVTLAAAKNM--IYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV 215 (802)
T ss_dssp TCCCEEEEEECTTCCHHHHHHHHHHHHTS--SCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHhc--cCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE
Confidence 45789998999988778889998765442 111124789998874311 0 1112355
Q ss_pred EEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh-cCCcccceeEEecCCcc-h
Q psy11724 195 EVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL-DGKHHFGQGLITYANEE-V 272 (355)
Q Consensus 195 viVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~-~g~~~~GQGiI~Y~n~~-~ 272 (355)
.+.-|+. ..+|++|++++.+. .++|||+++|.|+.++++++...+++.+ +.+..+-||-..+.+.. .
T Consensus 216 ~i~~~~~------~~GKa~alN~gl~~-----a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~ 284 (802)
T 4hg6_A 216 YSTRERN------EHAKAGNMSAALER-----LKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPI 284 (802)
T ss_dssp EEECSSC------CSHHHHHHHHHHHH-----CCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHH
T ss_pred EEEecCC------CCcchHHHHHHHHh-----cCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchH
Confidence 5444432 47899999999984 3689999999999999999999999985 55555667766665432 1
Q ss_pred hhhhhhhhceeecccchhh----HHHhhhccCcceeeecCceEEEeccccccc-ccccc
Q psy11724 273 VNWVTTLADSFRVADDMGK----LRLQFSLFHKPLLSWKGSYVVTQLKTSKKR-SKSVQ 326 (355)
Q Consensus 273 ~nwlttlaD~iRv~DDm~r----~rfq~~~~~rPlfG~HGs~LvVrg~vE~~V-gWD~~ 326 (355)
...+... -|..+.... .+........+. ..|+..+.|-++-+++ |||-.
T Consensus 285 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~~~~~Rr~al~~vGgf~~~ 338 (802)
T 4hg6_A 285 QRNLALG---DRCPPENEMFYGKIHRGLDRWGGAF--FCGSAAVLRRRALDEAGGFAGE 338 (802)
T ss_dssp HHHHTCC---TTSCCTTHHHHHTHHHHHHHTTCCC--CCSSSEEEEHHHHHHHTTCCCS
T ss_pred hhhhhHH---hhhhHHHHHHHHHHHhhHhhcCCce--ecccchhhhHHHHHHcCCcCCC
Confidence 1111111 111111111 111112233343 3688899999988877 57643
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.92 E-value=0.0002 Score=70.82 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=74.7
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCCccCccccch
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSYKTKSGALFK 211 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY~tk~GA~~K 211 (355)
|.|.|.|+|... ++.+++.+.+...+. .-.+++|.||-|...+ +.....++++.-| . ...+|
T Consensus 93 p~vsviIp~~n~-~~~l~~~l~sl~~q~---~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-----~-~~~g~ 162 (625)
T 2z86_A 93 DGLSIVIPTYNR-AKILAITLACLCNQK---TIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQK-----D-YGYQL 162 (625)
T ss_dssp CCEEEEEEESSC-HHHHHHHHHHHHTCC---CSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-----C-CSCCH
T ss_pred CcEEEEEecCCc-HHHHHHHHHHHHhhc---cCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-----C-CCcch
Confidence 678888899876 566777776543321 1137888888775432 2222345555432 2 13569
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCccccee
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQG 263 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQG 263 (355)
++|++.+.+. ..++||++||+|..++++.+..+++.++..+.....|
T Consensus 163 ~~a~N~g~~~-----a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g 209 (625)
T 2z86_A 163 CAVRNLGLRA-----AKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIG 209 (625)
T ss_dssp HHHHHHHHHH-----CCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEEC
T ss_pred hHHHHHHHHh-----CCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEE
Confidence 9999999984 3689999999999999999999999997655443333
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=97.85 E-value=0.00019 Score=60.95 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=71.9
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CC----CCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LP----IHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~----~~~~vrviVVP~eY~tk~GA~~ 210 (355)
|.|.|.|+|... ++.+++.+.+...+ -..+++|.||-|..-+ +. .++++++ +.. + -.+
T Consensus 5 p~vsViIp~yn~-~~~l~~~l~Sl~~q----~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~--i~~----~--n~G 71 (240)
T 3bcv_A 5 PKVSVIVPIYNV-EKYLDQCVQALLAQ----TLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV--IHK----K--NAG 71 (240)
T ss_dssp CSEEEEEEESSC-TTTHHHHHHHHHTC----SSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE--EEC----C--CCC
T ss_pred CcEEEEEecCCC-HHHHHHHHHHHHhC----cCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE--EEC----C--CCC
Confidence 568887888865 36677777765432 2347888888764422 10 1234444 432 2 367
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCccc
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHF 260 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~ 260 (355)
+++|++.+.+. ..++||++||+|..+.++.+..+++.+++.+.++
T Consensus 72 ~~~a~N~g~~~-----a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~ 116 (240)
T 3bcv_A 72 LGMACNSGLDV-----ATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDA 116 (240)
T ss_dssp HHHHHHHHHHH-----CCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSE
T ss_pred hHHHHHHHHHH-----cCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCE
Confidence 89999999984 3679999999999999999999999997644443
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=97.81 E-value=0.00021 Score=68.44 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=111.7
Q ss_pred CCCCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--CC--------CCC-CceEEEecCCCcc
Q psy11724 136 PLLAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--LP--------IHR-RIREVVVPKSYKT 204 (355)
Q Consensus 136 p~la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--L~--------~~~-~vrviVVP~eY~t 204 (355)
+.--|.|.|.|+|.....+.+++.+.+..++--. -..++|.||-|.... .. ..+ +++++-.|+.
T Consensus 25 ~~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~--~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n--- 99 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPR--HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQR--- 99 (472)
T ss_dssp CSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCG--GGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSC---
T ss_pred CcCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcH--hHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCC---
Confidence 3334789888899876557788888765442211 112678888764432 11 223 4555443332
Q ss_pred CccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhh------hhh
Q psy11724 205 KSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNW------VTT 278 (355)
Q Consensus 205 k~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nw------ltt 278 (355)
.++++|++.+.+. ..++||++||+|..++++.+..+++.++++.....-|.+.+-+...... ...
T Consensus 100 ----~G~~~a~N~g~~~-----A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 170 (472)
T 1xhb_A 100 ----SGLIRARLKGAAV-----SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYG 170 (472)
T ss_dssp ----CCHHHHHHHHHHH-----CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEE
T ss_pred ----CChHHHHHHHHHh-----ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccc
Confidence 5699999999984 3489999999999999999999999998655444444443221111100 000
Q ss_pred hhce---eecccchhhHHH--hhhcc--CcceeeecCceEEEecccccccc-cccch-------hhhhhhhcCCCCCeee
Q psy11724 279 LADS---FRVADDMGKLRL--QFSLF--HKPLLSWKGSYVVTQLKTSKKRS-KSVQK-------RSKYRQAQQPSQPIVL 343 (355)
Q Consensus 279 laD~---iRv~DDm~r~rf--q~~~~--~rPlfG~HGs~LvVrg~vE~~Vg-WD~~~-------~~~~~~~~~~~~~~~~ 343 (355)
..++ ++. ..+..-.+ ...-. ......+.|+.++++-++-+++| ||-+- ..-...+.+-.-.++.
T Consensus 171 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~ 249 (472)
T 1xhb_A 171 GFNWKLNFRW-YPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEI 249 (472)
T ss_dssp EECTTCCEEE-EECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEE
T ss_pred eeeccceeec-ccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEE
Confidence 0000 000 00000000 00000 11122356888889999888886 77432 2222444555667888
Q ss_pred eccccc
Q psy11724 344 HPCHIC 349 (355)
Q Consensus 344 ~~~~~~ 349 (355)
.||...
T Consensus 250 ~p~~~v 255 (472)
T 1xhb_A 250 VTCSHV 255 (472)
T ss_dssp EEEEEE
T ss_pred ccCcEE
Confidence 887543
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=97.71 E-value=0.00016 Score=72.22 Aligned_cols=197 Identities=13% Similarity=0.016 Sum_probs=112.9
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-C---------CCCCCceEEEecCCCccCccc
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-L---------PIHRRIREVVVPKSYKTKSGA 208 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-L---------~~~~~vrviVVP~eY~tk~GA 208 (355)
.|.|-|.|+|.....+.+++.+.+.+++--. --.++|.||-|.... - ...++++++--|+ -
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~--~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~-------n 181 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSPP--ELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKK-------R 181 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSCG--GGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSS-------C
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCCc--cCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCC-------C
Confidence 4788888899877556788888766543211 113468777653321 1 1234565544332 2
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhhhhceeecccc
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADD 288 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwlttlaD~iRv~DD 288 (355)
.++++|++.+.+. ..++||++||.|+.++++.+..+++.+++....+..+.|.+.+...........+.+|-+-+
T Consensus 182 ~G~~~A~N~G~~~-----A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~ 256 (570)
T 2d7i_A 182 EGLIRTRMLGASV-----ATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFD 256 (570)
T ss_dssp CCHHHHHHHHHHH-----CCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEEC
T ss_pred CCHHHHHHHHHHh-----cCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCccccccc
Confidence 6799999999984 35799999999999999999999999986554333344544322110000000011111111
Q ss_pred hh----hHHHh----hhccCc--ceeeecCceEEEeccccccc-cccc-------chhhhhhhhcCCCCCeeeeccccc
Q psy11724 289 MG----KLRLQ----FSLFHK--PLLSWKGSYVVTQLKTSKKR-SKSV-------QKRSKYRQAQQPSQPIVLHPCHIC 349 (355)
Q Consensus 289 m~----r~rfq----~~~~~r--PlfG~HGs~LvVrg~vE~~V-gWD~-------~~~~~~~~~~~~~~~~~~~~~~~~ 349 (355)
.. ++... ...... ....+.|+.+++|-++-+++ +||- ++..-..++.+-.-.|+..||..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v 335 (570)
T 2d7i_A 257 WEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRV 335 (570)
T ss_dssp TTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCeEE
Confidence 00 00000 000011 12235688899999988888 5773 334444445556677888888654
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=97.67 E-value=0.00047 Score=66.91 Aligned_cols=200 Identities=14% Similarity=0.069 Sum_probs=112.4
Q ss_pred CCCCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC------CCCCCCceEEEecCCCccCcccc
Q psy11724 136 PLLAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG------LPIHRRIREVVVPKSYKTKSGAL 209 (355)
Q Consensus 136 p~la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~------L~~~~~vrviVVP~eY~tk~GA~ 209 (355)
+.-.|.|.|.|+|.......+.+.+.+.+++-.. . ..++|.||-|.... +...++++++--++ -.
T Consensus 62 ~~~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~-~-~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~~-------n~ 132 (501)
T 2ffu_A 62 RVDLPATSVVITFHNEARSALLRTVVSVLKKSPP-H-LIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDR-------RE 132 (501)
T ss_dssp CSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCG-G-GEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSS-------CC
T ss_pred CcCCCCEEEEEEeCcCcHHHHHHHHHHHHhhCch-h-hceeEEEEECCCCchHHHHHHhcCCCEEEEECCC-------Cc
Confidence 3334789888899876555778888765543211 1 12578777653321 23344555543333 26
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEEecCCcchhhhhhh---hhceeecc
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTT---LADSFRVA 286 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI~Y~n~~~~nwltt---laD~iRv~ 286 (355)
++++|++.+.+. ..++||++||.|..++++.+...++.+++++..+-.+.+...+......... ....+...
T Consensus 133 G~~~A~N~G~~~-----A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (501)
T 2ffu_A 133 GLMRSRVRGADA-----AQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWN 207 (501)
T ss_dssp HHHHHHHHHHHH-----CCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTT
T ss_pred CHHHHHHHHHHh-----cCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeec
Confidence 799999999984 2589999999999999999999999998766544445443221111000000 00000000
Q ss_pred -----cchhhHHHhhh--ccCccee--eecCceEEEecccccccc-cccchh-------hhhhhhcCCCCCeeeeccccc
Q psy11724 287 -----DDMGKLRLQFS--LFHKPLL--SWKGSYVVTQLKTSKKRS-KSVQKR-------SKYRQAQQPSQPIVLHPCHIC 349 (355)
Q Consensus 287 -----DDm~r~rfq~~--~~~rPlf--G~HGs~LvVrg~vE~~Vg-WD~~~~-------~~~~~~~~~~~~~~~~~~~~~ 349 (355)
..+.......+ ....|+- .+.|+.++++-++-+++| ||-+-. .-...+.+-.-.++..||...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v 287 (501)
T 2ffu_A 208 LVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRV 287 (501)
T ss_dssp CCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEccCcEE
Confidence 00000000000 1112221 345888999999888886 774432 222334445667888887544
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.43 E-value=0.0011 Score=56.82 Aligned_cols=158 Identities=9% Similarity=0.111 Sum_probs=93.0
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--------CCCCCCceEEEecCCC---ccCccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--------LPIHRRIREVVVPKSY---KTKSGA 208 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--------L~~~~~vrviVVP~eY---~tk~GA 208 (355)
|.|.|.|+|... ++.+++.+.+...+ -..+++|.||-|...+ +...++++++.-|..- +.+ -
T Consensus 1 p~vSViIp~yn~-~~~l~~~l~Sl~~q----~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~--n 73 (255)
T 1qg8_A 1 PKVSVIMTSYNK-SDYVAKSISSILSQ----TFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTE--K 73 (255)
T ss_dssp CCEEEEEEESSC-TTTHHHHHHHHHTC----SCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHS--S
T ss_pred CeEEEEEEcCCC-HHHHHHHHHHHHhc----cCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEeccccccccccc--c
Confidence 457777888765 36677777765442 2347888888764321 2123456655444110 002 3
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcC-CcccceeEEecC--Ccchhhhhhhhhceeec
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDG-KHHFGQGLITYA--NEEVVNWVTTLADSFRV 285 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g-~~~~GQGiI~Y~--n~~~~nwlttlaD~iRv 285 (355)
.+++.|.+.+.+. ..++||++||+|..+.++.+..+++..++. +..+..|-..+- ++... . +....+.
T Consensus 74 ~G~~~a~N~gi~~-----a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~~~~~~~ 144 (255)
T 1qg8_A 74 TRYAALINQAIEM-----AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRD-I---VKETVRP 144 (255)
T ss_dssp CHHHHHHHHHHHH-----CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---C-E---EEEEEEC
T ss_pred cCHHHHHHHHHHH-----cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCc-c---hhhccCc
Confidence 6789999999984 377999999999999999999999998754 434434433221 22111 0 1112222
Q ss_pred ccchhhHHHhhhccCcceeeecCceEEEecccccccc
Q psy11724 286 ADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRS 322 (355)
Q Consensus 286 ~DDm~r~rfq~~~~~rPlfG~HGs~LvVrg~vE~~Vg 322 (355)
...+.. .......|+.+++|-++-+++|
T Consensus 145 ~~~~~~---------~~~~~~~~~~~~~rr~~~~~~g 172 (255)
T 1qg8_A 145 AAQVTW---------NAPCAIDHCSVMHRYSVLEKVK 172 (255)
T ss_dssp CCSCBS---------CCTTTSCGGGEEEETHHHHHHH
T ss_pred hHHHHH---------hhcCCCccceEEEEHHHHHhhc
Confidence 222221 1112234667888888888876
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=96.32 E-value=0.013 Score=53.95 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=72.1
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----CCCCCCceEE----EecCCCccCccccch
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----LPIHRRIREV----VVPKSYKTKSGALFK 211 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----L~~~~~vrvi----VVP~eY~tk~GA~~K 211 (355)
+.|.+.|+|... .+.+++.+.+..++. .-..++|.||-|..-+ +-..-..++. +++. ..+ -.+|
T Consensus 48 ~~vSViIp~yN~-~~~l~~~l~sl~~q~---~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~--~~~--n~G~ 119 (329)
T 3ckj_A 48 RTISVVLPALDE-EDTIGSVIDSISPLV---DGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPE--VPI--RPGK 119 (329)
T ss_dssp CCEEEEEEESSC-TTTHHHHHHHHGGGB---TTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTT--SCC--CCSH
T ss_pred CcEEEEEeeCCC-HHHHHHHHHHHHHhh---CCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeecc--CCC--CCCH
Confidence 678887888764 456777777654432 1124678887764422 0000012221 1110 123 4789
Q ss_pred hhhhhHHHHhcccccCCCceEEEecCCcc-cCchhhhhhhhhhh-cCCcccceeEEe
Q psy11724 212 ARALQYCLEDNVNILSGSDWVVHLDEETL-LTENSIRGVLNFVL-DGKHHFGQGLIT 266 (355)
Q Consensus 212 ARALqYa~e~~vn~~~~ddWVvHLDEDTl-l~edsv~gIl~fi~-~g~~~~GQGiI~ 266 (355)
++|++.+.+. ..++||++||.|.. +.++.+..+++.+. +.+.++-.|-..
T Consensus 120 ~~a~n~g~~~-----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~ 171 (329)
T 3ckj_A 120 GEALWRSLAA-----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYR 171 (329)
T ss_dssp HHHHHHHHHH-----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEE
T ss_pred HHHHHHHHHh-----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEec
Confidence 9999999984 35799999999999 89999999999864 445555555443
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=96.19 E-value=0.036 Score=57.18 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=70.9
Q ss_pred CCCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC---CCC------CCCceEEEecCCCccCccc
Q psy11724 138 LAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG---LPI------HRRIREVVVPKSYKTKSGA 208 (355)
Q Consensus 138 la~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~---L~~------~~~vrviVVP~eY~tk~GA 208 (355)
-.+.|.|.|+|-.. ++.+++.+.+...+-. ..-..++|.||-+..-. .+. ...-++.+++.+ + ..++
T Consensus 178 ~~pkVSVVIptYN~-~~~L~~~L~SL~~qt~-~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N-~G~a 253 (657)
T 4fix_A 178 GTANIAVGIPTFNR-PADCVNALRELTADPL-VDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-N-LGGS 253 (657)
T ss_dssp SCCCEEEECCBSSC-HHHHHHHHHHHTTSHH-HHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-C-CHHH
T ss_pred CCCeEEEEEEecCC-HHHHHHHHHHHHcCcc-ccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-C-CCHH
Confidence 45789987888754 4567777765433211 00024567777654321 110 001255556654 2 2124
Q ss_pred cchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcc-cceeEEec
Q psy11724 209 LFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHH-FGQGLITY 267 (355)
Q Consensus 209 ~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~-~GQGiI~Y 267 (355)
....+++++|... .+.|||++||+|+.+.++.+..++++.+..+.. +-.|.+.+
T Consensus 254 ~a~N~Gl~~A~g~-----~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~ 308 (657)
T 4fix_A 254 GGYSRVMYEALKN-----TDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLN 308 (657)
T ss_dssp HHHHHHHHHHHHH-----CCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEE
T ss_pred HHHHHHHHHHHhc-----CCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEec
Confidence 4444555666542 267999999999999999999999999765433 33344443
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.76 E-value=0.052 Score=53.61 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=69.7
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC---------CCCCCCceEEEecCCCccCccccc
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG---------LPIHRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~---------L~~~~~vrviVVP~eY~tk~GA~~ 210 (355)
+.|.|.|+|... .+.+++.+.+..++ -..+++|.||-|..-+ ...+++++++ - .+ -.+
T Consensus 375 ~~vsiii~~yn~-~~~l~~~l~s~~~q----~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~--~----~~--n~G 441 (625)
T 2z86_A 375 PLVSIYIPAYNC-SKYIVRCVESALNQ----TITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI--S----QK--NKG 441 (625)
T ss_dssp CSEEEEEEESSC-TTTHHHHHHHHHSS----SCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEE--E----EC--CCC
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHHHhC----cCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEE--e----CC--CCC
Confidence 678888888765 46677777765432 2357888888764432 1233455554 2 23 357
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD 255 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~ 255 (355)
+++|++.+.+. ..++||++||+|..+.++.+...++..+.
T Consensus 442 ~~~a~n~g~~~-----a~g~~i~~ld~D~~~~~~~l~~~~~~~~~ 481 (625)
T 2z86_A 442 IGSASNTAVRL-----CRGFYIGQLDSDDFLEPDAVELCLDEFRK 481 (625)
T ss_dssp HHHHHHHHHHH-----CCSSEEEECCTTCEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----cCCCEEEEECCCcccChhHHHHHHHHHHh
Confidence 89999999984 36799999999999999999999988753
No 11
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=95.22 E-value=0.068 Score=51.66 Aligned_cols=119 Identities=18% Similarity=0.064 Sum_probs=74.4
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC----CCCCCCceEEEecCCCccCccccchhhh
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG----LPIHRRIREVVVPKSYKTKSGALFKARA 214 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~----L~~~~~vrviVVP~eY~tk~GA~~KARA 214 (355)
.+.|.+.|+|... .+.+.+.+.+....++..+ .+++|.||-|..-+ +-..-..+++.-..-+-...+..+|++|
T Consensus 93 ~p~vSVVIP~yNe-~~~l~~~l~sl~~~l~~~~-~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNV-ADTVGGIIDEIHALNERAP-LIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSC-TTTHHHHHHHHHHHHHHSC-CCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCC-HHHHHHHHHHHHHHHhcCC-CCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence 3678887888765 3456666665544343322 35678888764422 1011112332111111111235789999
Q ss_pred hhHHHHhcccccCCCceEEEecCCcc-cCchhhhhhhhhhhcC-CcccceeE
Q psy11724 215 LQYCLEDNVNILSGSDWVVHLDEETL-LTENSIRGVLNFVLDG-KHHFGQGL 264 (355)
Q Consensus 215 LqYa~e~~vn~~~~ddWVvHLDEDTl-l~edsv~gIl~fi~~g-~~~~GQGi 264 (355)
++.+.+. + .++||++||.|.. ++++.+..+++.++++ +.++-.|.
T Consensus 171 ~n~G~~~----A-~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~ 217 (387)
T 3f1y_A 171 MWRALSV----T-RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAA 217 (387)
T ss_dssp HHHHTTT----C-CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEE
T ss_pred HHHHHHh----c-CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEe
Confidence 9999973 2 5899999999999 8999999999999765 55665664
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=94.40 E-value=0.0071 Score=61.79 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred cEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC-----CCC-----CCCceEEEecCCCccCccccc
Q psy11724 141 FICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG-----LPI-----HRRIREVVVPKSYKTKSGALF 210 (355)
Q Consensus 141 ~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~-----L~~-----~~~vrviVVP~eY~tk~GA~~ 210 (355)
.|.|.|+|... ++.+++.+.+..++- ..+++|.||-|..-+ +.. .+++++ +..+ + -.+
T Consensus 3 ~vSVIIp~yN~-~~~L~~~L~Sll~Qt----~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~--i~~~---~--n~G 70 (729)
T 3l7i_A 3 KLTIIVTYYNA-EEYITGCLESIKQQR----TQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRF--IDLD---E--NSG 70 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEcCCC-HHHHHHHHHHHHhCC----CCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEE--EECC---C--CCC
Confidence 45665677654 356777777654433 236778777653321 111 123444 4332 2 256
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhh
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVL 254 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~ 254 (355)
.+.|.+.+.+. ..++||++||+|..+.++.+..+++.++
T Consensus 71 ~~~arN~gi~~-----A~gdyI~flD~Dd~~~p~~l~~l~~~l~ 109 (729)
T 3l7i_A 71 HAHARNIALEE-----VETPYFMFLDADDELASYAITFYLEKFN 109 (729)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHh-----ccCCEEEEECCCCCCChhHHHHHHHHhc
Confidence 78899999873 3679999999999999999999999988
No 13
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.96 E-value=0.53 Score=41.48 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhc
Q psy11724 211 KARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLD 255 (355)
Q Consensus 211 KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~ 255 (355)
.|+|.+.+.+. + .++|+++||.|+.++++.+..++++.++
T Consensus 62 ~a~a~N~Gi~~----A-~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 62 GFSWHKQMLPR----C-KGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTTHHHHHGGG----C-CSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----c-CCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 47888988873 2 4799999999999999999999999875
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=93.38 E-value=0.44 Score=44.22 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=53.8
Q ss_pred CCcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHH
Q psy11724 139 APFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYC 218 (355)
Q Consensus 139 a~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa 218 (355)
.+.|-|.|+|+.. ++.+++.+.+....+.+. -.+|+|.||-|.. ++...||+|++.+
T Consensus 64 ~~~VSIIIP~yN~-~~~L~~~L~sl~~~l~q~-~~~~EIiVVdds~---------------------d~~f~~a~a~N~G 120 (287)
T 2fy7_A 64 PHKVAIIIPFRNR-QEHLKYWLYYLHPVLQRQ-QLDYGIYVINQAG---------------------DTIFNRAKLLNVG 120 (287)
T ss_dssp SCEEEEEEEESSC-HHHHHHHHHHHHHHHHHT-TCEEEEEEEEECS---------------------SSCCCHHHHHHHH
T ss_pred CCcEEEEEeeCCC-HHHHHHHHHHHHHHHHHh-cCCceEEEEEeCC---------------------CCccchhhhhhhH
Confidence 3678887888864 456777776554322222 2467888877621 1123477888877
Q ss_pred HHhcccccCCCceEEEecCCcccCchh
Q psy11724 219 LEDNVNILSGSDWVVHLDEETLLTENS 245 (355)
Q Consensus 219 ~e~~vn~~~~ddWVvHLDEDTll~eds 245 (355)
..... ....++|+++||.|+++.++.
T Consensus 121 ~~~al-~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 121 FQEAL-KDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHH-HHSCCCEEEEECTTEEESBTT
T ss_pred HHHHH-HhCCCCEEEEECCCcccCCCc
Confidence 62110 135689999999999998886
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=87.16 E-value=2 Score=41.97 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=46.3
Q ss_pred CceEEEecCCCccCcc--ccchhhhhhHHHHhcccc-cCCCceEEEecCCcc-cCchhhhhhhhhhhcCCccccee
Q psy11724 192 RIREVVVPKSYKTKSG--ALFKARALQYCLEDNVNI-LSGSDWVVHLDEETL-LTENSIRGVLNFVLDGKHHFGQG 263 (355)
Q Consensus 192 ~vrviVVP~eY~tk~G--A~~KARALqYa~e~~vn~-~~~ddWVvHLDEDTl-l~edsv~gIl~fi~~g~~~~GQG 263 (355)
++++++++.. ..| -.+|+.|++-..+. .. ...+|||++||-|.- .+++.+...++.++.| +++-.|
T Consensus 58 g~~vi~~~~~---r~~~~n~GkG~Al~~G~~~--Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g-~D~V~g 127 (397)
T 2bo4_A 58 GTPVSVRLQE---RLGTLRPGKGDGMNTALRY--FLEETQWERIHFYDADITSFGPDWITKAEEAADFG-YGLVRH 127 (397)
T ss_dssp SCCEEEEECC---CCSSSSSSHHHHHHHHHHH--HHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCeEEEEecc---cCCCCCCCHHHHHHHHHHH--HHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcC-CCEEEE
Confidence 4666665421 002 37899998888732 11 346899999999996 8999999999988764 665555
No 16
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=55.65 E-value=8.2 Score=35.57 Aligned_cols=27 Identities=22% Similarity=0.580 Sum_probs=23.5
Q ss_pred CCCceEEEecCCcccCchhhhhhhhhh
Q psy11724 227 SGSDWVVHLDEETLLTENSIRGVLNFV 253 (355)
Q Consensus 227 ~~ddWVvHLDEDTll~edsv~gIl~fi 253 (355)
.+-+|+++.||||.+..+.++..|.-.
T Consensus 92 ~~~~Wf~~~DDDtyv~~~nL~~~L~~~ 118 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVNPKALLQLLKTF 118 (280)
T ss_dssp HTCSEEEEEETTEEECHHHHHHHHTTS
T ss_pred CCCcEEEEeCCCcEEcHHHHHHHHHhC
Confidence 478999999999999999988877654
No 17
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=45.01 E-value=95 Score=29.02 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=75.5
Q ss_pred CcEEEEEEecCchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCCCC---------CCCCceEEEec--CCCccC---
Q psy11724 140 PFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLP---------IHRRIREVVVP--KSYKTK--- 205 (355)
Q Consensus 140 ~~I~irVVTrGd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~---------~~~~vrviVVP--~eY~tk--- 205 (355)
|.|+++-+|...--++. -+-+.++++.- ..+ ..|+|.|.+..-. +.-.-+.+.++ ++|+.+
T Consensus 3 p~I~vVTPTy~R~~Q~a--~LtRLa~TL~~--Vp~-l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~~~~~~~~~~p 77 (246)
T 2d0j_A 3 PTIYAITPTYSRPVQKA--ELTRLANTFRQ--VAQ-LHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYKRPGLP 77 (246)
T ss_dssp CCEEEEEEECCSTTHHH--HHHHHHHHHTT--STT-EEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCCCCC----CCC
T ss_pred CEEEEEeCCCCccchhH--HHHHHHHHHhc--CCc-eEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCCccccCCCCCc
Confidence 45666567766522221 12233344432 235 5788887643311 10113455554 567653
Q ss_pred ccccchhhhhhHHHHhcccccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccc---------eeEEecCCcchhhhh
Q psy11724 206 SGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFG---------QGLITYANEEVVNWV 276 (355)
Q Consensus 206 ~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~G---------QGiI~Y~n~~~~nwl 276 (355)
.|..-.-+||+|=++++......+-=|+|.|||+.-+-+-+..+ -.++.-+ .+- +|-+. .++.+.-|.
T Consensus 78 rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~em-R~i~~vg-vWPVglvg~~~~EgPv~-~~gkVvGw~ 154 (246)
T 2d0j_A 78 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEM-RTTRKVS-VWPVGLVGGRRYERPLV-ENGKVVGWY 154 (246)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHH-TTCSSEE-ECCEEEETTEEEEEEEE-ETTEEEEEE
T ss_pred chHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHH-hhhceee-EEEEEeecCcceeccee-eCCEeccee
Confidence 24334457999999863211234566899999998776555332 1221000 011 22232 244555566
Q ss_pred hhhhceeecccchhhHHHhhh
Q psy11724 277 TTLADSFRVADDMGKLRLQFS 297 (355)
Q Consensus 277 ttlaD~iRv~DDm~r~rfq~~ 297 (355)
+.-...-|+.=||+-|.+-.+
T Consensus 155 t~w~~~R~fpiDmAGFA~N~~ 175 (246)
T 2d0j_A 155 TGWRADRPFAIDMAGFAVSLQ 175 (246)
T ss_dssp CSSCTTSTTCCCGGGEEEEHH
T ss_pred cccCCCCcCcccceeeEeehh
Confidence 554455677888886666555
No 18
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=39.25 E-value=58 Score=28.61 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=50.5
Q ss_pred CchHHHHHHHHHHhHHHhhhcCcccEEEEEEecCCCC--CCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccC
Q psy11724 150 GDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVG--LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILS 227 (355)
Q Consensus 150 Gd~p~lVr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~--L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~ 227 (355)
++.| ++.+.+. .+...+.+ .|.|+++.+.- +-...+++++.++.+. . .+-+|+.+-+... ...
T Consensus 25 ~GkP-li~~~l~----~l~~~~~~--~ivVv~~~~~i~~~~~~~g~~v~~~~~~~--~---~Gt~~~~~~~~~l---~~~ 89 (252)
T 3oam_A 25 GGKP-MIQWVYE----QAMQAGAD--RVIIATDDERVEQAVQAFGGVVCMTSPNH--Q---SGTERLAEVVAKM---AIP 89 (252)
T ss_dssp TTEE-HHHHHHH----HHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEECCTTC--C---SHHHHHHHHHHHT---TCC
T ss_pred CCEE-HHHHHHH----HHHhCCCC--eEEEECCHHHHHHHHHHcCCEEEEcCCCC--C---CcHHHHHHHHHhc---CcC
Confidence 4444 4444443 33344544 46677753210 0011235666554432 2 3345654433321 123
Q ss_pred CCceEEEecCCc-ccCchhhhhhhhhhhcC
Q psy11724 228 GSDWVVHLDEET-LLTENSIRGVLNFVLDG 256 (355)
Q Consensus 228 ~ddWVvHLDEDT-ll~edsv~gIl~fi~~g 256 (355)
++++++.++-|+ +++.+.+..++++..+.
T Consensus 90 ~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~ 119 (252)
T 3oam_A 90 ADHIVVNVQGDEPLIPPAIIRQVADNLAAC 119 (252)
T ss_dssp TTSEEEECCTTCTTCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCeeecCHHHHHHHHHHHHhc
Confidence 568888888888 78999999999987653
No 19
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=37.30 E-value=52 Score=27.82 Aligned_cols=76 Identities=22% Similarity=0.164 Sum_probs=42.0
Q ss_pred EEEEEecCCC--CCCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCc-ccCchhhhhhhhh
Q psy11724 176 IIEVVTDKPV--GLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEET-LLTENSIRGVLNF 252 (355)
Q Consensus 176 ~V~VVtDk~i--~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDT-ll~edsv~gIl~f 252 (355)
.|.||++.+. .+-....++++.-|.++.+. ...-+-++.-+.+. ...+.++++.++-|. +++.+.+..+++.
T Consensus 47 ~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~sv~~~l~~---~~~~~d~vlv~~~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 47 RIIVSTDGGLIAEEAKNFGVEVVLRPAELASD--TASSISGVIHALET---IGSNSGTVTLLQPTSPLRTGAHIREAFSL 121 (228)
T ss_dssp EEEEEESCHHHHHHHHHTTCEEEECCC--------CHHHHHHHHHHHH---HTCCSEEEEECCTTCTTCCHHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHcCCEEEeCchHHcCC--CCChHHHHHHHHHH---hCCCCCEEEEEcCCCCcCCHHHHHHHHHH
Confidence 4777775431 11111235555555544332 33444566666652 222468999999998 5788999998887
Q ss_pred hhcC
Q psy11724 253 VLDG 256 (355)
Q Consensus 253 i~~g 256 (355)
....
T Consensus 122 ~~~~ 125 (228)
T 1ezi_A 122 FDEK 125 (228)
T ss_dssp CCTT
T ss_pred HHhc
Confidence 6543
No 20
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=28.07 E-value=1.1e+02 Score=27.62 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=44.2
Q ss_pred hhhcCcccEEEEEEecCCCC--CCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEecCCc-ccCc
Q psy11724 167 CNEAGLENYIIEVVTDKPVG--LPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEET-LLTE 243 (355)
Q Consensus 167 ~~~~gL~nf~V~VVtDk~i~--L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHLDEDT-ll~e 243 (355)
+...+.. .|.|+|+.+.- +-...+++++..+.+. ..| .+| +.-+.+. . ...++|+|+.++-|+ +++.
T Consensus 53 l~~~~i~--~IvV~t~~~~i~~~~~~~g~~v~~~~~~~--~~G---t~~-i~~~~~~-l-~~~~~d~vlv~~gD~Pli~~ 122 (264)
T 3k8d_A 53 ARESGAE--RIIVATDHEDVARAVEAAGGEVCMTRADH--QSG---TER-LAEVVEK-C-AFSDDTVIVNVQGDEPMIPA 122 (264)
T ss_dssp HHHTTCS--EEEEEESCHHHHHHHHHTTCEEEECCTTC--CSH---HHH-HHHHHHH-H-TCCTTCEEEEECTTCTTCCH
T ss_pred HHhCCCC--EEEEECCHHHHHHHHHHcCCEEEEecCCC--CCC---HHH-HHHHHHH-h-ccCCCCEEEEEcCCcccCCH
Confidence 3344544 46777763311 1011235665554432 223 456 3444442 1 123567777777777 6899
Q ss_pred hhhhhhhhhhhcCC
Q psy11724 244 NSIRGVLNFVLDGK 257 (355)
Q Consensus 244 dsv~gIl~fi~~g~ 257 (355)
+.++.+++...+.+
T Consensus 123 ~~i~~li~~~~~~~ 136 (264)
T 3k8d_A 123 TIIRQVADNLAQRQ 136 (264)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999887543
No 21
>2w82_A ORF18, ARDA; DNA mimic, replication inhibitor; 2.80A {Enterococcus faecalis}
Probab=27.01 E-value=21 Score=30.66 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=15.0
Q ss_pred CCccceeeeeccccccccc
Q psy11724 1 MNHMSFYVGCLGTYLQGSR 19 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (355)
|+-|+.||+|||.|-.|+-
T Consensus 1 m~~~~iyV~~l~~Yn~G~l 19 (165)
T 2w82_A 1 MDDMQVYIANLGKYNEGEL 19 (165)
T ss_dssp --CCEEEEEEEEEESSSSE
T ss_pred CCcceeeeecHHHhcCCce
Confidence 7889999999999987753
No 22
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=26.98 E-value=69 Score=29.66 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHHHHhHHHhhhcCcccEEEEEEecCCCCCCCCCCceEEEecCCCccCccccchhhhhhHHHHhcccccCCCceEEEe
Q psy11724 156 VKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHL 235 (355)
Q Consensus 156 Vr~sV~~~~~~~~~~gL~nf~V~VVtDk~i~L~~~~~vrviVVP~eY~tk~GA~~KARALqYa~e~~vn~~~~ddWVvHL 235 (355)
.++++.--++||++.|.+.|. . ...+.+ + +||.- --.|+=|++=|.. ---+-+|+-+|
T Consensus 22 l~ksiKNK~DYArrHGYelfy---~---d~~l~k----~-----~e~a~---eW~ksW~IR~AM~----khPeAEWfWWL 79 (213)
T 2p6w_A 22 ARKTKELVEEYCSIHGYNFYY---E---ESEPLE----T-----EEHAL---HFRRSWIIQQAAE----KFPSTEWFLWL 79 (213)
T ss_dssp HHHHHHHHHHHHHHHTCEEEE---E---CSCCSC----C-----SHHHH---HHTHHHHHHHHHH----HCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEE---e---eccccc----c-----hhhcc---cchhhHHHHHHHH----HCCCceEEEEe
Confidence 777887778999999888444 2 111111 0 01100 0112224444443 45568999999
Q ss_pred cCCcccCchh
Q psy11724 236 DEETLLTENS 245 (355)
Q Consensus 236 DEDTll~eds 245 (355)
|.|+++++-.
T Consensus 80 DsDAlIMDmn 89 (213)
T 2p6w_A 80 DSDVYVNPKN 89 (213)
T ss_dssp CTTEEECGGG
T ss_pred cCCceeecCC
Confidence 9999987443
No 23
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=26.55 E-value=1.8e+02 Score=27.00 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=25.4
Q ss_pred ccCCCceEEEecCCcccCchhhhhhhhhhhcCCcccceeEE
Q psy11724 225 ILSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLI 265 (355)
Q Consensus 225 ~~~~ddWVvHLDEDTll~edsv~gIl~fi~~g~~~~GQGiI 265 (355)
+...--..+=++++...+.+.++.+.+++...++.+||+|-
T Consensus 304 ~~~~~l~~iPl~~~e~~g~~~L~~~~~~l~~~~~~~~~~~~ 344 (349)
T 3ug7_A 304 FGDKVIAYVPLLRTEAKGIETLKQIAKILYGEEEKEEQKIE 344 (349)
T ss_dssp STTSEEEEEECCSSCSCSHHHHHHHHHHHC-----------
T ss_pred cCCCcEEEecCCCCCCCCHHHHHHHHHHHcCCCCccccccc
Confidence 44555677788999999999999999999888889999984
No 24
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=22.29 E-value=95 Score=25.79 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEEecCchH-HHHHHHHHHhHHHhhh
Q psy11724 135 SPLLAPFICIRIVTRGDYA-QLVKDNVARNMARCNE 169 (355)
Q Consensus 135 ~p~la~~I~irVVTrGd~p-~lVr~sV~~~~~~~~~ 169 (355)
-.++.+.+.+||-|.|+.| +++++++...++.|..
T Consensus 56 pHPle~~~~lrIqT~~~~p~eaL~~al~~L~~~~~~ 91 (115)
T 1xpp_A 56 KHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLYED 91 (115)
T ss_dssp SSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHH
Confidence 3446788999999998765 5588888887777764
No 25
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=21.69 E-value=3.2e+02 Score=21.97 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=29.5
Q ss_pred chhhhhhHHHHhcccccCCCceEEEecCCc-ccCchhhhhhhhh
Q psy11724 210 FKARALQYCLEDNVNILSGSDWVVHLDEET-LLTENSIRGVLNF 252 (355)
Q Consensus 210 ~KARALqYa~e~~vn~~~~ddWVvHLDEDT-ll~edsv~gIl~f 252 (355)
+-+.++.-+.+. ...+.++++.++-|. +++.+.++.+++.
T Consensus 80 g~~~~i~~al~~---~~~~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 80 GCAASLRVALAR---VHPRATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp CCHHHHHHHHTT---SCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 345677777762 222468899999998 6899999998887
No 26
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=20.97 E-value=1.5e+02 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCCCCCcEEEEEEecCc--hHHHHHHHHHHhHHHhhh
Q psy11724 135 SPLLAPFICIRIVTRGD--YAQLVKDNVARNMARCNE 169 (355)
Q Consensus 135 ~p~la~~I~irVVTrGd--~p~lVr~sV~~~~~~~~~ 169 (355)
..++.+.+.+||-|.|+ -.+++++++...++.|..
T Consensus 46 pHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~ 82 (92)
T 2pa8_L 46 PHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSH 82 (92)
T ss_dssp SSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 34467899999999974 346799999888887764
Done!