RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11724
         (355 letters)



>gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2.
           Members of this family of prokaryotic proteins include
           putative glucosyltransferases, which are involved in
           bacterial capsule biosynthesis.
          Length = 194

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 231 WVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMG 290
           W++ LD +T+L  + +R + N +L  +    QG +T  N  V NW+  LAD    A+D G
Sbjct: 1   WILLLDADTVLPPDCLRLIANLMLSPEVALIQGPVTPRN--VRNWLERLADLEF-AEDHG 57

Query: 291 KLRLQFSLFHKPLLSWKGSYVVTQLK 316
           K RL        L S  GS  + +  
Sbjct: 58  KDRLFREALGGVLPSV-GSGALFRRS 82


>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
           Members of this family of prokaryotic proteins include
           putative glucosyltransferase, which are involved in
           bacterial capsule biosynthesis.
          Length = 229

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 190 HRRIREVVVPKSYKTKSGALFKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGV 249
             R+  V  P+      G   KARAL   L         SD VV LD ++++  +++R +
Sbjct: 57  DVRVHVVRRPR----PPGPTGKARALNEALR-----AIKSDLVVLLDADSVVDPDTLRRL 107

Query: 250 LNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADD 288
           L F L       QG +   N      V     +   A  
Sbjct: 108 LPFFLSKGVGAVQGPVFVLNLR--TAV-APLYALEFALR 143


>gnl|CDD|224975 COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 320

 Score = 34.1 bits (78), Expect = 0.10
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 97  SILYILRYLTFLPLP---QVLFNFAGLVFYNAFPDKVVLKGSPLLAPFIC--IRIVTRGD 151
           ++L  L     L LP    VL +F  L   +     +++    L  PFI   + +  R  
Sbjct: 110 ALLLALFLGVLLSLPILLLVLGSFIILPLSDFLAIALLISLLGLPLPFILFSLALKKRLK 169

Query: 152 YAQLVKDNVARNMARCNEAGLE-NYIIEVVTDKPVGLPIHRRIREVVV 198
                  +  R MA C EAGL     ++ V D+  G  I         
Sbjct: 170 EIARELPDFLRLMAVCLEAGLSLADALKRVADELYGQRILAEELARTT 217


>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
          Length = 384

 Score = 32.0 bits (74), Expect = 0.49
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
           LI   N+   EVV+  T L D+F+ ADD
Sbjct: 163 LIVIPNDKLLEVVDKKTPLLDAFKAADD 190


>gnl|CDD|213996 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase and Histidinol
           Phosphatase domain of Chlorobi like.  The PHP (also
           called histidinol phosphatase-2/HIS2) domain is
           associated with several types of DNA polymerases, such
           as PolIIIA and family X DNA polymerases, stand alone
           histidinol phosphate phosphatases (HisPPases), and a
           number of uncharacterized protein families. Chlorobi PHP
           is uncharacterized protein. HisPPase catalyzes the
           eighth step of histidine biosynthesis, in which
           L-histidinol phosphate undergoes dephosphorylation to
           produce histidinol. The HisPPase can be classified into
           two types: the bifunctional Hisppase found in
           proteobacteria that belongs to the DDDD superfamily and
           the monofunctional Bacillus subtilis type that is a
           member of the PHP family. The PHP domain has four
           conserved sequence motifs and contains an invariant
           histidine that is involved in metal ion coordination.
           The PHP domain of HisPPase is structurally homologous to
           other members of the PHP family that have a distorted
           (beta/alpha)7 barrel fold with a trinuclear metal site
           on the C-terminal side of the barrel.
          Length = 235

 Score = 29.6 bits (67), Expect = 2.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 206 SGALFKARALQYCLEDNVNILSGSD 230
           +G  +   A+Q+ LE N+ ++  SD
Sbjct: 165 NGTEYYPEAIQWALEYNLTVMGTSD 189


>gnl|CDD|233545 TIGR01720, NRPS-para261, non-ribosomal peptide synthase domain
           TIGR01720.  This domain appears to be located
           immediately downstream from a condensation domain
           (pfam00668), and is followed primarily by the end of the
           molecule or another condensation domain (in a few cases
           it is followed by pfam00501, an AMP-binding module). The
           converse is not true, pfam00668 domains are not always
           followed by this domain. This implicates this domain in
           possible post-condensation modification events. This
           model is 171 amino acids long and contains three very
           highly conserved regions. At the N-terminus is a nearly
           invariant lysine (position 11) followed by
           xxxRxxPxxGxGYG in which the proline and the first
           glycine are invariant. This is followed approximately 22
           residues later by the motif FNYLG. Near the C-terminus
           of the domain is the sequence TxSD where the serine and
           aspartate are nearly invariant.
          Length = 153

 Score = 28.8 bits (65), Expect = 2.6
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 7/26 (26%)

Query: 101 ILRYLT-------FLPLPQVLFNFAG 119
           +LRYLT         P P++ FN+ G
Sbjct: 25  VLRYLTEPEEKLAASPQPEISFNYLG 50


>gnl|CDD|227937 COG5650, COG5650, Predicted integral membrane protein [Function
           unknown].
          Length = 536

 Score = 29.3 bits (66), Expect = 3.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 85  FDPWVRYGFFGCSILYILRYLTFLPLPQVLFNFAGLVFYNAFPDKVVLKGSPLLAPF 141
           FDP+VRY     ++    RY+ + P+    +   G V Y ++P    L   P+L  F
Sbjct: 117 FDPYVRY-----NMSKAFRYMHY-PVLGTPYQTGGYVIYFSYPGLSALLFLPVLFEF 167


>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
           V transport a variety of intracellular cargo
           processively along actin filaments, such as membraneous
           organelles and mRNA. This catalytic (head) domain has
           ATPase activity and belongs to the larger group of
           P-loop NTPases. Myosins are actin-dependent molecular
           motors that play important roles in muscle contraction,
           cell motility, and organelle transport. The head domain
           is a molecular motor, which utilizes ATP hydrolysis to
           generate directed movement toward the plus end along
           actin filaments. A cyclical interaction between myosin
           and actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle.
          Length = 691

 Score = 29.2 bits (66), Expect = 3.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 230 DWVVHLDEETLLTENSIRGVLNF--VLD--GKHHFG-----QGLITYANE 270
           DW+V +  ++L T    +   +F  VLD  G   F      Q  I YANE
Sbjct: 347 DWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396


>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA.
            This family includes the mammalian protein tyrosine
           phosphatase-like protein, PTPLA. A significant variation
           of PTPLA from other protein tyrosine phosphatases is the
           presence of proline instead of catalytic arginine at the
           active site. It is thought that PTPLA proteins have a
           role in the development, differentiation, and
           maintenance of a number of tissue types.
          Length = 161

 Score = 27.6 bits (62), Expect = 7.5
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 89  VRYGFFGCSILYI-------LRYLTFLPLPQVLFNFAGLVFYNAFP 127
           +RY ++  ++L         LRY  F+ L  +      L+ Y + P
Sbjct: 63  IRYSYYALNLLGTVPYWLTWLRYTLFIVLYPLGVLSELLLIYQSLP 108


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,158,499
Number of extensions: 1771636
Number of successful extensions: 1757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 14
Length of query: 355
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 257
Effective length of database: 6,590,910
Effective search space: 1693863870
Effective search space used: 1693863870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)