RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11724
(355 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-06
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 160 VARNM-ARCNEAGLENY---IIEVVTDKPVGLPIH------RRIREVVVPKSYKTKSGAL 209
A+++ R + + Y I+++V + PV L IH +RIRE ++T
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 210 FKARALQYCLEDNVNILSGSDWVVHLDEETL-LTEN 244
K + ++ + + ++ L T+
Sbjct: 1701 LKTEKI---FKEINEHSTSYTF--RSEKGLLSATQF 1731
Score = 48.5 bits (115), Expect = 2e-06
Identities = 57/319 (17%), Positives = 93/319 (29%), Gaps = 124/319 (38%)
Query: 31 WSDFFQFLDIPVKFQPLQLCFKIKPKDASNPSWISPGIIVFNVEICVKLTPESTFDPW-- 88
W FF + + + + F +I G V C + P ++ P
Sbjct: 289 WESFFVSVR-----KAITVLF-----------FI--G-----VR-CYEAYPNTSLPPSIL 324
Query: 89 ----------------VRYGFFGCSILYILRYL----TFLPLPQVLFNFAGLVFYNAFPD 128
+ + + Y+ + LP + + LV N
Sbjct: 325 EDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVE--ISLV--NG-AK 375
Query: 129 KVVLKGSPLLAPFICIRIVTRGDYAQLVKDNVA-RNMARCNEAGLENYIIEVVTDKPVG- 186
+V+ G P L N+ R +GL+ I K
Sbjct: 376 NLVVSGPP----------------QSLYGLNLTLRKAKA--PSGLDQSRIPFSERKLKFS 417
Query: 187 ---LPI----HRRIREVVVPKSYK--TKSGALFKARALQ---YCLEDNVNI--LSGS--- 229
LP+ H + K K+ F A+ +Q Y D ++ LSGS
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 230 ---DWV----VHLDEETLLTENSIRGVLNFVLDGKHHFGQG------LITYANEE----- 271
D + V + T I LD FG G ++T+ N++
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHI-------LD----FGPGGASGLGVLTHRNKDGTGVR 526
Query: 272 VVNWVTTLADSFRVADDMG 290
V+ TL + DD G
Sbjct: 527 VIV-AGTLDIN--PDDDYG 542
Score = 40.4 bits (94), Expect = 0.001
Identities = 54/327 (16%), Positives = 91/327 (27%), Gaps = 125/327 (38%)
Query: 91 YGFF---GCSILYI--LR--YLTFLPLPQVLFNFAG-----LV--------FY------- 123
F G + Y LR Y T+ L L F+ L+ +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 124 ------NAFPDKVVLKGSPLLAPFICIRIVTRGDYAQLVKDNVARNMARCNEAGLENYII 177
+ PDK L P+ P I + QL A + G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGV--------IQL-----AHYVVTAKLLGFTP--- 260
Query: 178 EVVTDKPVGLPIHRRIREVVV------PKS----YKTKSGA---LF-------------- 210
+ G H + +V S + + A LF
Sbjct: 261 GELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 211 -KARALQYCLEDNVNI----LSGSDWVVHLDEETLLTENSIRGVLNFVLDGKHHFGQGLI 265
L+ LE+N + LS + +L +E + ++ + N L L+
Sbjct: 319 LPPSILEDSLENNEGVPSPMLS----ISNLTQEQV--QDYVNKT-NSHLPAGKQVEISLV 371
Query: 266 TYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFHKPLLSWKGSYVVTQLKTSKKRSKSV 325
N A + V+ G + SL+ + L+ +K S
Sbjct: 372 ---NG---------AKNLVVS---GPPQ---SLYG----------LNLTLRKAKAPSGLD 403
Query: 326 QKRSKYRQAQQPSQ-----PIVLHPCH 347
Q R + + ++ P+ P H
Sbjct: 404 QSRIPFSE-RKLKFSNRFLPVAS-PFH 428
Score = 27.7 bits (61), Expect = 7.5
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 256 GKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFSLFH 300
G G G+ Y + V AD+ D G FS+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNH-FKDTYG-----FSILD 1663
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 43/296 (14%), Positives = 81/296 (27%), Gaps = 90/296 (30%)
Query: 9 GCLG-TYL--QGSRKESNVIGSNFR--WSDFFQFLDIPVKFQPLQ-LCFKIKPKDASNPS 62
G G T++ +F+ W + + LQ L ++I P S
Sbjct: 160 GS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 63 WISPGIIVFNVE-------ICVKLTPES------TFDPWVRYGF-FGCSILYILRY---- 104
S + + + K + F C IL R+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 105 -----------------LTFLP--LPQVLFNFAGLVFYNAFPDKVVLKGSPLLAPFICIR 145
+T P + +L + P + VL +P I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLP-REVLTTNPRRLSII--- 333
Query: 146 IVTRGDYAQLVKDNVARNMARCNEAGLENYIIEVVTDKPVGLPIHRRIREVVV----PKS 201
A+ ++D +A +N+ K V I E + P
Sbjct: 334 -------AESIRDGLAT---------WDNW-------KHVNCDKLTTIIESSLNVLEPAE 370
Query: 202 YKTKSGALFKARALQYCLEDNVNI----LSGSDW--VVHLDEETLLTENSIRGVLN 251
Y+ +F ++ + +I LS W V+ D ++ + ++
Sbjct: 371 YR----KMFDRLSV---FPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 35.2 bits (80), Expect = 0.040
Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 33/158 (20%)
Query: 210 FKARALQYCLEDNVNILSGSDWVVHLDEETLLTENSIRGVL-----NFVLDGKHHFGQ-- 262
F+ QY +D +++ +V + D + ++ + +L + ++ K
Sbjct: 9 FETGEHQYQYKDILSVFE-DAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 263 ---GLITYANEEVV------------NWVTTLADSFRVAD-DMGKLRLQFSLFHKPLLSW 306
+ EE+V + L + + + L +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRL--Y 120
Query: 307 KGSYVVTQLKTSKKRSKSVQKRSKYRQAQQPSQPIVLH 344
+ V + S R + K + +P++ +++
Sbjct: 121 NDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLID 156
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 30.7 bits (70), Expect = 0.77
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LIT NE ++ +L +F ADD
Sbjct: 161 LITIPNEKLLTILGKDASLLAAFAKADD 188
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 30.6 bits (70), Expect = 0.80
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LIT NE ++ +L +F ADD
Sbjct: 161 LITIPNEKLLTILGKDASLLAAFAKADD 188
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 30.6 bits (70), Expect = 0.81
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
I N+ E+ N T+ D+F+ D
Sbjct: 157 YIVIHNDKIKELSNRTLTIKDAFKEVDS 184
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 30.3 bits (69), Expect = 0.90
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LI N+ ++ + +L D+FR AD+
Sbjct: 161 LIVIPNDRLLQMGDAAVSLMDAFRSADE 188
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 30.4 bits (69), Expect = 0.96
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LI N+ ++V+ T + ++F+ AD+
Sbjct: 167 LIVIPNDRLLDIVDKSTPMMEAFKEADN 194
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 30.3 bits (69), Expect = 0.99
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LI N+ E+V+ T + ++FR AD+
Sbjct: 161 LIVIPNDRILEIVDKNTPMLEAFREADN 188
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 30.3 bits (69), Expect = 1.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 264 LITYANE---EVVNWVTTLADSFRVADD 288
LI +N E + + D+F AD+
Sbjct: 171 LIKISNNKLMEELPRDVKIKDAFLKADE 198
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis,
cofactor-independ epimerization; 1.50A {Brevibacillus
brevis}
Length = 466
Score = 29.6 bits (67), Expect = 1.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 9/28 (32%)
Query: 101 ILRYLT---------FLPLPQVLFNFAG 119
IL+++T F P+V FN+ G
Sbjct: 345 ILKHVTLPENRGSLSFRVQPEVTFNYLG 372
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA
binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB:
2adb_A
Length = 164
Score = 28.1 bits (62), Expect = 3.3
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 244 NSIRGVLNFVLDGKHHFGQGLITYANEEVVNWVTTLADSFRVADDMGKLRLQFS 297
+ VL + K++ Q L+ YA+ D + + LR+ FS
Sbjct: 68 SKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor,
carbohydrate binding, coiled-coil, jelly roll; HET: ARA;
1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A*
1xja_A 2ara_A
Length = 164
Score = 26.5 bits (58), Expect = 9.8
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 79 LTPESTFDPWVRYGFFGCSILYILRYLTFLP--LPQVLFNF----AGLVFYNAFPDKVVL 132
L P +F+ + G L + P + + N G+V + V
Sbjct: 3 LLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGR-EFVCR 61
Query: 133 KGSPLLAP 140
G LL P
Sbjct: 62 PGDILLFP 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,493,163
Number of extensions: 328778
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 20
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)