BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11725
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 179 EFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESAD 238
+F+ GG + F GIFGI L +++G + + ++ ++V+T+ L+ K + +
Sbjct: 208 KFDYGGKEYE-FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPE 266
Query: 239 SYNAYVKIGDRGRDGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI-- 295
+G+RG+ + D +++F + V CWN+Q P + + D+
Sbjct: 267 L------LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ--KMPLRMKNTDVVY 318
Query: 296 DNEALIFPSDVKV-VGDDLWVISDRM-PIHLESELNFNDVNFRIFTV-PLQEAV 346
+ +F +D+ V LW +S+ PI + ++ +R+ + QEA+
Sbjct: 319 TSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAI 372
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 179 EFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESAD 238
+F+ GG + F GIFGI L +++G + + ++ ++V+T+ L+ K + +
Sbjct: 208 KFDYGGKEYE-FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPE 266
Query: 239 SYNAYVKIGDRGRDGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDID 296
+G+RG+ + D +++F + V CWN+Q P + +N +
Sbjct: 267 L------LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKXPLRXKNT-DVVYT 319
Query: 297 NEALIFPSDVKV-VGDDLWVISDRM-PIHLESELNFNDVNFRIFTVP-LQEAV 346
+ +F +D+ V LW S+ PI + ++ +R+ + QEA+
Sbjct: 320 SSRFVFGTDISVDSKGGLWFXSNGFPPIRKSEKFKYDFPRYRLXRIXDTQEAI 372
>pdb|3SXN|A Chain A, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|B Chain B, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|C Chain C, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|D Chain D, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|E Chain E, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|F Chain F, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
Length = 422
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 248 DRGRDGHLTSHVMDHNGI------------LYFNLIDRNAVGCWNSQYPYKPENIGHIDI 295
DRG DG ++HV++ + L +LIDR ++G +P+ P + ++
Sbjct: 245 DRGPDGRRSAHVVELTAVTADAHAALWRALLGLDLIDRVSIGT----HPHDP--LPYLLT 298
Query: 296 DNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVN 334
D + V DDLW+ +P LE+ D++
Sbjct: 299 DPRQ----AQVTASADDLWIRIMNVPAALEARRYQADLD 333
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 272 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 328
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 135 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 191
Query: 329 NFNDVNFRIFTVPLQEAVR 347
+F D+NFR+F V Q + R
Sbjct: 192 SFKDLNFRMFDVGGQRSER 210
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 272 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 328
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 104 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 160
Query: 329 NFNDVNFRIFTVPLQEAVR 347
+F D+NFR+F V Q + R
Sbjct: 161 SFKDLNFRMFDVGGQRSER 179
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 272 DRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIH--LESEL 328
D C++ Y+ ++ G+ D E L+ P V D V+ R+ +E++
Sbjct: 103 DSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD---VLRSRVKTTGIIETQF 159
Query: 329 NFNDVNFRIFTVPLQEAVR 347
+F D+NFR+F V Q + R
Sbjct: 160 SFKDLNFRMFDVGGQRSER 178
>pdb|1YW6|A Chain A, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72.
pdb|1YW6|B Chain B, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72
Length = 335
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 94 LSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIA-LTPPEA 132
L+ T K+ +++E I G+ + W +G+ + LTPP+
Sbjct: 10 LALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,838,842
Number of Sequences: 62578
Number of extensions: 463155
Number of successful extensions: 1120
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 14
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)