Query psy11725
Match_columns 347
No_of_seqs 166 out of 737
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 17:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03022 MRJP: Major royal jel 100.0 2.6E-57 5.6E-62 434.5 23.1 253 3-347 28-283 (287)
2 PF03022 MRJP: Major royal jel 99.5 6.8E-14 1.5E-18 134.5 6.2 135 106-270 115-253 (287)
3 PF08450 SGL: SMP-30/Gluconola 98.1 0.00019 4.2E-09 66.5 16.4 110 192-319 134-246 (246)
4 COG3386 Gluconolactonase [Carb 97.8 0.0036 7.8E-08 61.1 19.5 112 194-323 165-280 (307)
5 PF08450 SGL: SMP-30/Gluconola 96.8 0.048 1E-06 50.4 14.4 71 253-323 134-210 (246)
6 PLN02919 haloacid dehalogenase 95.7 0.91 2E-05 51.5 20.0 60 254-317 805-876 (1057)
7 PF03088 Str_synth: Strictosid 95.0 0.044 9.6E-07 44.0 4.7 60 257-323 2-84 (89)
8 PF06977 SdiA-regulated: SdiA- 93.2 4 8.7E-05 38.7 15.0 65 254-322 172-246 (248)
9 PF00058 Ldl_recept_b: Low-den 93.1 0.17 3.6E-06 34.7 4.0 40 264-309 1-41 (42)
10 PLN02919 haloacid dehalogenase 90.9 6 0.00013 45.1 15.3 59 254-317 741-821 (1057)
11 COG3386 Gluconolactonase [Carb 86.0 1.8 4E-05 42.3 6.3 64 253-316 163-229 (307)
12 KOG4659|consensus 85.9 2.3 5.1E-05 48.6 7.5 118 193-321 408-555 (1899)
13 KOG1520|consensus 80.9 48 0.001 33.5 13.8 25 293-317 338-364 (376)
14 COG3211 PhoX Predicted phospha 80.8 22 0.00048 37.7 11.8 120 191-319 360-519 (616)
15 COG4946 Uncharacterized protei 75.9 25 0.00054 36.6 10.3 85 8-118 381-477 (668)
16 PF01436 NHL: NHL repeat; Int 75.4 3 6.4E-05 25.8 2.4 22 300-321 1-23 (28)
17 PF01436 NHL: NHL repeat; Int 74.7 4.9 0.00011 24.9 3.2 25 254-278 3-27 (28)
18 PRK02888 nitrous-oxide reducta 72.9 1.4E+02 0.0031 32.2 16.8 119 193-322 322-454 (635)
19 smart00135 LY Low-density lipo 70.6 7.5 0.00016 25.2 3.6 31 253-283 9-40 (43)
20 PF05787 DUF839: Bacterial pro 69.8 1E+02 0.0022 32.6 13.5 67 255-321 352-457 (524)
21 KOG4499|consensus 69.5 9.8 0.00021 36.3 5.3 62 254-317 159-229 (310)
22 PF06739 SBBP: Beta-propeller 69.2 5.7 0.00012 26.5 2.8 27 245-271 5-31 (38)
23 TIGR02604 Piru_Ver_Nterm putat 64.0 27 0.00058 34.6 7.6 58 254-317 15-88 (367)
24 KOG1520|consensus 63.8 7.2 0.00016 39.2 3.5 63 254-323 162-246 (376)
25 TIGR02604 Piru_Ver_Nterm putat 62.7 15 0.00033 36.3 5.7 58 255-319 126-203 (367)
26 COG4257 Vgb Streptogramin lyas 59.6 32 0.0007 33.6 6.9 81 253-342 104-187 (353)
27 PF06433 Me-amine-dh_H: Methyl 59.6 17 0.00037 36.2 5.2 31 7-44 267-297 (342)
28 PF07995 GSDH: Glucose / Sorbo 59.4 27 0.00059 34.1 6.7 88 254-342 50-155 (331)
29 TIGR02658 TTQ_MADH_Hv methylam 59.3 2E+02 0.0043 28.8 17.2 22 9-30 77-98 (352)
30 KOG1214|consensus 59.1 42 0.0009 37.4 8.3 111 208-339 1037-1151(1289)
31 KOG4659|consensus 58.6 23 0.0005 41.0 6.5 69 253-322 407-497 (1899)
32 PRK11028 6-phosphogluconolacto 58.5 1.7E+02 0.0037 27.8 16.8 62 256-321 231-295 (330)
33 cd01644 RT_pepA17 RT_pepA17: R 57.1 4.9 0.00011 37.1 1.0 36 48-86 178-213 (213)
34 KOG0268|consensus 57.1 15 0.00033 36.8 4.4 83 5-118 163-259 (433)
35 KOG4499|consensus 56.2 22 0.00047 34.1 5.0 57 253-319 212-275 (310)
36 COG4257 Vgb Streptogramin lyas 52.5 27 0.00058 34.2 5.1 62 254-323 190-259 (353)
37 TIGR03606 non_repeat_PQQ dehyd 49.5 1.7E+02 0.0037 30.4 10.8 23 191-214 78-103 (454)
38 PF02333 Phytase: Phytase; In 47.6 72 0.0016 32.3 7.5 85 252-338 207-302 (381)
39 PRK11028 6-phosphogluconolacto 44.3 2.8E+02 0.0062 26.2 18.1 114 193-321 127-249 (330)
40 PF01011 PQQ: PQQ enzyme repea 43.7 39 0.00085 22.0 3.5 24 8-31 9-32 (38)
41 KOG0650|consensus 41.1 1.7E+02 0.0036 31.6 9.1 118 11-144 424-578 (733)
42 COG3204 Uncharacterized protei 39.8 3.8E+02 0.0083 26.4 15.4 67 254-324 234-310 (316)
43 PF10282 Lactonase: Lactonase, 36.0 4.1E+02 0.009 25.7 17.7 62 254-317 246-310 (345)
44 TIGR02276 beta_rpt_yvtn 40-res 31.3 1E+02 0.0022 19.6 4.0 23 7-29 12-34 (42)
45 PF10282 Lactonase: Lactonase, 29.7 5.2E+02 0.011 25.0 13.1 114 195-322 147-267 (345)
46 PF07995 GSDH: Glucose / Sorbo 29.3 2.5E+02 0.0055 27.3 8.1 62 254-318 115-200 (331)
47 KOG1214|consensus 28.2 1.1E+02 0.0025 34.1 5.6 77 253-335 1025-1104(1289)
48 PF13360 PQQ_2: PQQ-like domai 26.6 2.3E+02 0.005 25.0 6.8 28 7-34 44-71 (238)
49 PF14298 DUF4374: Domain of un 23.1 1.6E+02 0.0035 30.4 5.4 74 263-342 232-317 (435)
50 PF13360 PQQ_2: PQQ-like domai 22.8 3.1E+02 0.0066 24.2 6.8 20 10-29 4-23 (238)
51 KOG1273|consensus 21.7 6.4E+02 0.014 25.3 9.0 21 10-30 88-108 (405)
52 smart00564 PQQ beta-propeller 21.3 1E+02 0.0022 18.7 2.4 18 8-25 15-32 (33)
53 TIGR02658 TTQ_MADH_Hv methylam 20.7 8.5E+02 0.019 24.3 13.5 23 8-30 127-149 (352)
54 PF01731 Arylesterase: Arylest 20.7 1.9E+02 0.0041 22.9 4.3 19 299-317 52-72 (86)
55 PF07494 Reg_prop: Two compone 20.6 86 0.0019 18.5 1.8 13 306-318 10-23 (24)
56 PF03646 FlaG: FlaG protein; 20.6 99 0.0022 25.0 2.8 18 9-26 68-85 (107)
No 1
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=100.00 E-value=2.6e-57 Score=434.53 Aligned_cols=253 Identities=36% Similarity=0.723 Sum_probs=201.2
Q ss_pred CccccCcEEEEEECCCCcEEEEEEcCCCCCCCCCccceEEEeecCCcccccccchhhhhhhcccccCCccceeeeceecC
Q psy11725 3 TKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWN 82 (347)
Q Consensus 3 ~~~~~~pkl~~~dl~td~~~~~~~~~~~~~~~~s~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
++|.|||||++|||+||+++|+|.||+++++++|+|+||+||.+++.
T Consensus 28 ~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~--------------------------------- 74 (287)
T PF03022_consen 28 PKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGN--------------------------------- 74 (287)
T ss_dssp TGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTT---------------------------------
T ss_pred CCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCC---------------------------------
Confidence 34699999999999999999999999999999999999999998754
Q ss_pred CCCCeEEEEEcCCCcccccccccccceeceEEEEccCCceeeeecCCCCCCCCceeeeccCCCCcceeeeehhhcccccc
Q psy11725 83 PKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLA 162 (347)
Q Consensus 83 ~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~~dGi~giaL~p~~~~~~R~l~fhplas~~~f~v~t~vLr~~t~~ 162 (347)
|+++|||| + |....|+||||+. +| ++|+ ..+..|.++
T Consensus 75 -~~~~~aYI---t----------D~~~~glIV~dl~-~~--------------~s~R----v~~~~~~~~---------- 111 (287)
T PF03022_consen 75 -CDDGFAYI---T----------DSGGPGLIVYDLA-TG--------------KSWR----VLHNSFSPD---------- 111 (287)
T ss_dssp -S-SEEEEE---E----------ETTTCEEEEEETT-TT--------------EEEE----EETCGCTTS----------
T ss_pred -CcceEEEE---e----------CCCcCcEEEEEcc-CC--------------cEEE----EecCCccee----------
Confidence 78999999 8 4456799999998 65 6676 444444444
Q ss_pred ccccccccceeccCCcccccCCceeEecCCceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcc
Q psy11725 163 ESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNA 242 (347)
Q Consensus 163 ~~~~~~~~f~~~g~rg~~s~~g~~~~~~~~GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~ 242 (347)
|.++.+...|..|.+ ++|++|++|+|....| ++||||||+|+++|+|+|++|+|++.++.+.+.++
T Consensus 112 ------------p~~~~~~i~g~~~~~-~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~ 177 (287)
T PF03022_consen 112 ------------PDAGPFTIGGESFQW-PDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQ 177 (287)
T ss_dssp -------------SSEEEEETTEEEEE-TTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT
T ss_pred ------------ccccceeccCceEec-CCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEHHHhhCcccccccccccc
Confidence 666777888999998 9999999999977777 55999999999999999999999999875446789
Q ss_pred eeeecccCCCCccceeEeccCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEcC---cEEEEEecC
Q psy11725 243 YVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVG---DDLWVISDR 319 (347)
Q Consensus 243 v~~lG~~g~~s~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~~---g~Lyv~snr 319 (347)
|+.+|+|| ++++|+++|.+|+|||+++++++|+||+++++|.++|+++|++|++.|+|||+++|++ |+|||++||
T Consensus 178 v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 178 VQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp -EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred ceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 99999997 7999999999999999999999999999999999999999999976699999999995 999999999
Q ss_pred CcccccCCCCCCcccEEEEEeechhhhC
Q psy11725 320 MPIHLESELNFNDVNFRIFTVPLQEAVR 347 (347)
Q Consensus 320 l~~~~~~~~d~~e~nfrI~r~~v~e~~~ 347 (347)
||++.+++++.+|+||||++++++|++|
T Consensus 256 l~~~~~~~~~~~e~nfri~~~~v~~~~~ 283 (287)
T PF03022_consen 256 LQRFAYGNLNPDEVNFRIWRARVDELIK 283 (287)
T ss_dssp --SSTGGG---SS-SEEEEES-HHHHHT
T ss_pred chHhhccCCCCCccEEeEEEeCHHHHhc
Confidence 9999999999999999999999999986
No 2
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.46 E-value=6.8e-14 Score=134.51 Aligned_cols=135 Identities=28% Similarity=0.487 Sum_probs=96.3
Q ss_pred ccceeceEEEEccCCceeeeecCCCCCCCCceeeeccCCCCcceeeeehhhccccccccccccccceeccCCcccccCCc
Q psy11725 106 SEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGL 185 (347)
Q Consensus 106 ~~~~~agivfdl~~dGi~giaL~p~~~~~~R~l~fhplas~~~f~v~t~vLr~~t~~~~~~~~~~f~~~g~rg~~s~~g~ 185 (347)
..+.+++..|++. +|++||||+|...++ |.||||||++.++|.|+|++|++++..........++.+|+++ ++++.
T Consensus 115 ~~~~i~g~~~~~~-dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWP-DGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEET-TSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SECE
T ss_pred cceeccCceEecC-CCccccccCCCCCCc-cEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccC--CCCce
Confidence 4567789999998 999999999998888 9999999999999999999999999987665567788888886 56677
Q ss_pred eeEecCCceeEEEeCCCCCCCceeeeEeecCCCcceeeeh-hhh-cCCCccchhhhhcceeeecccCCCCccceeEecc-
Q psy11725 186 TFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVST-RVL-RNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDH- 262 (347)
Q Consensus 186 ~~~~~~~GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t-~vL-~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~- 262 (347)
+.++ +.|++++++...++++||+ ....|...+ ++| +|+. .+ .-.+++.++.
T Consensus 191 ~~~D-~~G~ly~~~~~~~aI~~w~-------~~~~~~~~~~~~l~~d~~-----~l-------------~~pd~~~i~~~ 244 (287)
T PF03022_consen 191 MAID-PNGNLYFTDVEQNAIGCWD-------PDGPYTPENFEILAQDPR-----TL-------------QWPDGLKIDPE 244 (287)
T ss_dssp EEEE-TTTEEEEEECCCTEEEEEE-------TTTSB-GCCEEEEEE-CC------G-------------SSEEEEEE-T-
T ss_pred EEEC-CCCcEEEecCCCCeEEEEe-------CCCCcCccchheeEEcCc-----ee-------------eccceeeeccc
Confidence 7777 8999999999999999997 444443321 222 2221 01 2457788887
Q ss_pred -CccEeecc
Q psy11725 263 -NGILYFNL 270 (347)
Q Consensus 263 -~G~Ly~~~ 270 (347)
+|.||+..
T Consensus 245 ~~g~L~v~s 253 (287)
T PF03022_consen 245 GDGYLWVLS 253 (287)
T ss_dssp -TS-EEEEE
T ss_pred cCceEEEEE
Confidence 88888865
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.08 E-value=0.00019 Score=66.48 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=72.6
Q ss_pred CceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEeccCccEeeccC
Q psy11725 192 EGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLI 271 (347)
Q Consensus 192 ~GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~G~Ly~~~v 271 (347)
...+||+++|++ ..||+.--...++|+.+...=.. .... ...+..+ .+.....+|+++|.+|+||++..
T Consensus 134 ~~pNGi~~s~dg----~~lyv~ds~~~~i~~~~~~~~~~-~~~~----~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 134 GFPNGIAFSPDG----KTLYVADSFNGRIWRFDLDADGG-ELSN----RRVFIDF--PGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp SSEEEEEEETTS----SEEEEEETTTTEEEEEEEETTTC-CEEE----EEEEEE---SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred ccccceEECCcc----hheeecccccceeEEEecccccc-ceee----eeeEEEc--CCCCcCCCcceEcCCCCEEEEEc
Confidence 346799999985 56898877777787775522000 0110 0111111 11123689999999999999999
Q ss_pred CCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc---CcEEEEEecC
Q psy11725 272 DRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV---GDDLWVISDR 319 (347)
Q Consensus 272 ~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~---~g~Lyv~snr 319 (347)
..+.|.++++++.. +.. +.-+ ...|..+.++ .+.|||++.|
T Consensus 203 ~~~~I~~~~p~G~~----~~~-i~~p--~~~~t~~~fgg~~~~~L~vTta~ 246 (246)
T PF08450_consen 203 GGGRIVVFDPDGKL----LRE-IELP--VPRPTNCAFGGPDGKTLYVTTAR 246 (246)
T ss_dssp TTTEEEEEETTSCE----EEE-EE-S--SSSEEEEEEESTTSSEEEEEEB-
T ss_pred CCCEEEEECCCccE----EEE-EcCC--CCCEEEEEEECCCCCEEEEEeCC
Confidence 99999999999764 233 3333 3489999996 4699999975
No 4
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0036 Score=61.13 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=77.4
Q ss_pred eeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEeccCccEeeccCCC
Q psy11725 194 IFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDR 273 (347)
Q Consensus 194 V~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~G~Ly~~~v~~ 273 (347)
-++||+||++ .++||.--..+..++.+... ....... . ..+..... .++..||+.+|.+|+||...+..
T Consensus 165 ~NGla~SpDg----~tly~aDT~~~~i~r~~~d~-~~g~~~~---~-~~~~~~~~--~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 165 PNGLAFSPDG----KTLYVADTPANRIHRYDLDP-ATGPIGG---R-RGFVDFDE--EPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred cCceEECCCC----CEEEEEeCCCCeEEEEecCc-ccCccCC---c-ceEEEccC--CCCCCCceEEeCCCCEEEecccC
Confidence 3679999996 57999888888888887764 1111111 1 12222211 13489999999999999655554
Q ss_pred -CeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc---CcEEEEEecCCccc
Q psy11725 274 -NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV---GDDLWVISDRMPIH 323 (347)
Q Consensus 274 -~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~---~g~Lyv~snrl~~~ 323 (347)
..|.+|+|++.. .-.+.-| . .||+...++ ...|||++++....
T Consensus 234 g~~v~~~~pdG~l-----~~~i~lP-~-~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 234 GGRVVRFNPDGKL-----LGEIKLP-V-KRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred CceEEEECCCCcE-----EEEEECC-C-CCCccceEeCCCcCEEEEEecCCCCC
Confidence 599999999753 2334443 3 799999998 36999999887653
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.77 E-value=0.048 Score=50.40 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=50.2
Q ss_pred CccceeEeccCc-cEeeccCCCCeeEEEcCCCCCC-CCceeeEEecCCceecCcceEEc-CcEEEEEe---cCCccc
Q psy11725 253 GHLTSHVMDHNG-ILYFNLIDRNAVGCWNSQYPYK-PENIGHIDIDNEALIFPSDVKVV-GDDLWVIS---DRMPIH 323 (347)
Q Consensus 253 s~~~g~~~D~~G-~Ly~~~v~~~aI~cwn~~~~~~-~~~~~~l~~d~~~l~wpd~~~i~-~g~Lyv~s---nrl~~~ 323 (347)
....|++++.+| .||+++-..+.|.+++.+.+-. ..+.++++.-+...-.|||+.+| +|+|||.. +++.++
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 367899999776 6999999999999998864321 23445554432233479999999 99999994 555555
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.74 E-value=0.91 Score=51.52 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=46.5
Q ss_pred ccceeEeccCccEeeccCCCCeeEEEcCCCCCCCCceeeEEec-----------CCceecCcceEEc-CcEEEEEe
Q psy11725 254 HLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDID-----------NEALIFPSDVKVV-GDDLWVIS 317 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d-----------~~~l~wpd~~~i~-~g~Lyv~s 317 (347)
...|+++|.+|+||+++...+.|..||+.+.. +..++-. ...+..|.|+.++ +|.|||..
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 34688999999999999999999999997643 2223211 2357789999999 89999975
No 7
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.97 E-value=0.044 Score=44.01 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=38.6
Q ss_pred eeEeccC-ccEeeccCCC-----------------CeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-Cc-EEEEE
Q psy11725 257 SHVMDHN-GILYFNLIDR-----------------NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVI 316 (347)
Q Consensus 257 g~~~D~~-G~Ly~~~v~~-----------------~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g-~Lyv~ 316 (347)
+..++.+ |.+||++... ..+.+|||.+.- ..+| .| .|.||.|+.+. |+ .|.|.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~----~~vl-~~--~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE----TTVL-LD--GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE----EEEE-EE--EESSEEEEEE-TTSSEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe----EEEe-hh--CCCccCeEEEcCCCCEEEEE
Confidence 4566765 9999999865 568899998752 2344 45 49999999999 55 56665
Q ss_pred e---cCCccc
Q psy11725 317 S---DRMPIH 323 (347)
Q Consensus 317 s---nrl~~~ 323 (347)
. .|+++|
T Consensus 75 Et~~~Ri~ry 84 (89)
T PF03088_consen 75 ETGRYRILRY 84 (89)
T ss_dssp EGGGTEEEEE
T ss_pred eccCceEEEE
Confidence 3 455554
No 8
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.23 E-value=4 Score=38.74 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=40.0
Q ss_pred ccceeEec-cCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecC------CceecCcceEEc-CcEEEEEe--cCCcc
Q psy11725 254 HLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN------EALIFPSDVKVV-GDDLWVIS--DRMPI 322 (347)
Q Consensus 254 ~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~------~~l~wpd~~~i~-~g~Lyv~s--nrl~~ 322 (347)
..++..+| .+|.||.=.-+...|...|.++.. +..+.-+. +.+.=|-|++++ +|.|||++ |+|-+
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~----~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRV----VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--E----EEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCE----EEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 56788888 889999999999999999988753 22333332 345569999999 99999998 55443
No 9
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.09 E-value=0.17 Score=34.66 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=33.9
Q ss_pred ccEeeccCCCC-eeEEEcCCCCCCCCceeeEEecCCceecCcceEEc
Q psy11725 264 GILYFNLIDRN-AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV 309 (347)
Q Consensus 264 G~Ly~~~v~~~-aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~ 309 (347)
|.||.++...+ .|.+-+.++. +.++++++ .|.+|.|++++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs----~~~~vi~~--~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS----NRRTVISD--DLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST----SEEEEEES--STSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCC----CeEEEEEC--CCCCcCEEEEC
Confidence 57999999999 9999998875 36788876 49999999985
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.92 E-value=6 Score=45.09 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=44.2
Q ss_pred ccceeEeccCcc-EeeccCCCCeeEEEcCCCCCCCCceeeEE--------------------ecCCceecCcceEEc-Cc
Q psy11725 254 HLTSHVMDHNGI-LYFNLIDRNAVGCWNSQYPYKPENIGHID--------------------IDNEALIFPSDVKVV-GD 311 (347)
Q Consensus 254 ~~~g~~~D~~G~-Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~--------------------~d~~~l~wpd~~~i~-~g 311 (347)
+..|++++.+|. ||+++...+.|.+||+++.- ..+++ .+ ..+..|.++.++ +|
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----~~~~~gg~~~~~~~l~~fG~~dG~g~~-~~l~~P~Gvavd~dG 815 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGG----SRLLAGGDPTFSDNLFKFGDHDGVGSE-VLLQHPLGVLCAKDG 815 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----EEEEEecccccCcccccccCCCCchhh-hhccCCceeeEeCCC
Confidence 567899997765 99999999999999986421 11211 11 357789999999 89
Q ss_pred EEEEEe
Q psy11725 312 DLWVIS 317 (347)
Q Consensus 312 ~Lyv~s 317 (347)
.|||..
T Consensus 816 ~LYVAD 821 (1057)
T PLN02919 816 QIYVAD 821 (1057)
T ss_pred cEEEEE
Confidence 999985
No 11
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.99 E-value=1.8 Score=42.30 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.7
Q ss_pred CccceeEeccCc-cEeeccCCCCeeEEEcCC-CCCCCCceeeEEecCCceecCcceEEc-CcEEEEE
Q psy11725 253 GHLTSHVMDHNG-ILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVI 316 (347)
Q Consensus 253 s~~~g~~~D~~G-~Ly~~~v~~~aI~cwn~~-~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Lyv~ 316 (347)
..+.|++.+.+| .||+++-..+.|.+++-+ ..-...+....+.-...=--|||+.+| +|+||+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 488999999777 999999999999998655 222223333222221234689999999 9999963
No 12
>KOG4659|consensus
Probab=85.90 E-value=2.3 Score=48.56 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=65.9
Q ss_pred ceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCC---C-------------Cccc
Q psy11725 193 GIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGR---D-------------GHLT 256 (347)
Q Consensus 193 GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~---~-------------s~~~ 256 (347)
.-.++|++|-. -+||.+---++..|+|.. |...+. +..|+.+.--|+... . -..-
T Consensus 408 h~Yy~AvsPvd----gtlyvSdp~s~qv~rv~s--l~~~d~---~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk 478 (1899)
T KOG4659|consen 408 HSYYIAVSPVD----GTLYVSDPLSKQVWRVSS--LEPQDS---RNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK 478 (1899)
T ss_pred ceeEEEecCcC----ceEEecCCCcceEEEecc--CCcccc---ccCeeEEeccCcCccccccccCcchhcccceeccCC
Confidence 34678888864 368888777878888743 222111 111222221121110 0 0123
Q ss_pred eeEeccCccEeeccCCC------CeeEEE----cCCC--CCCCCceeeEEecCCceecCcceEEc--CcEEEEEecCCc
Q psy11725 257 SHVMDHNGILYFNLIDR------NAVGCW----NSQY--PYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMP 321 (347)
Q Consensus 257 g~~~D~~G~Ly~~~v~~------~aI~cw----n~~~--~~~~~~~~~l~~d~~~l~wpd~~~i~--~g~Lyv~snrl~ 321 (347)
|.++|..|+|||.+-.. ++|..= ++.+ |. +.-..+=+.+ -+|.||.+++|+ ++.|||+-|.+-
T Consensus 479 GIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~-~C~~~~kl~~-~~leWPT~LaV~Pmdnsl~Vld~nvv 555 (1899)
T KOG4659|consen 479 GIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPR-TCAQITKLVD-LQLEWPTSLAVDPMDNSLLVLDTNVV 555 (1899)
T ss_pred ceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCcc-ccccccchhh-eeeecccceeecCCCCeEEEeecceE
Confidence 68899999999988532 333221 1111 11 1111122234 479999999999 999999987654
No 13
>KOG1520|consensus
Probab=80.88 E-value=48 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=17.3
Q ss_pred EEecCCceecCcceEEc--CcEEEEEe
Q psy11725 293 IDIDNEALIFPSDVKVV--GDDLWVIS 317 (347)
Q Consensus 293 l~~d~~~l~wpd~~~i~--~g~Lyv~s 317 (347)
...|.+-..+-....+. ||+||+=|
T Consensus 338 ~lhD~~g~~~~~~sev~E~dg~LyiGS 364 (376)
T KOG1520|consen 338 SLHDKEGKVITLVSEVGEHDGHLYIGS 364 (376)
T ss_pred EEecCCCCceEEEEEEeecCCeEEEcc
Confidence 34576666666666776 78999865
No 14
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=80.84 E-value=22 Score=37.71 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCceeEEEeCCCCCCCceee-eEe--ecCCCc-ceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEec-cCcc
Q psy11725 191 PEGIFGIALTPPEADGFKNL-LFH--PIASHS-EFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMD-HNGI 265 (347)
Q Consensus 191 ~~GV~giaL~p~~~~g~w~L-Yf~--~las~~-~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D-~~G~ 265 (347)
..|+++.|-.+.+..+.|-- -|. .+.-.. -|.-..++|-+..+.. ..+...-+ +| ..+.++. ..|.
T Consensus 360 deGtLyVAkfn~dGtg~W~pl~~g~g~l~a~n~gf~~q~~vli~tR~AA-~~lGAT~m---dR-----pE~i~~~p~~g~ 430 (616)
T COG3211 360 DEGTLYVAKFNEDGTGNWLPLVFGQGGLTAENIGFASQAEVLIDTRLAA-DKLGATPM---DR-----PEWIAVNPGTGE 430 (616)
T ss_pred hcceEEEEEeCCCCCcceeeeecCCCCccccccCccccchhhHHHHHHH-HHhCCccc---cC-----ccceeecCCcce
Confidence 57999999988877788842 111 111111 1333333433322111 01111111 11 1223333 4567
Q ss_pred EeeccCCCC----------------eeEEEcCCCC-CCCC--ceeeEEe--cCCceec-------------CcceEEc-C
Q psy11725 266 LYFNLIDRN----------------AVGCWNSQYP-YKPE--NIGHIDI--DNEALIF-------------PSDVKVV-G 310 (347)
Q Consensus 266 Ly~~~v~~~----------------aI~cwn~~~~-~~~~--~~~~l~~--d~~~l~w-------------pd~~~i~-~ 310 (347)
+||++-+.. .|.+|-+.+. ++.. ..++.++ |+..+.- ||++.|| .
T Consensus 431 Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~~f~~PDnl~fD~~ 510 (616)
T COG3211 431 VYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINANWFNSPDNLAFDPW 510 (616)
T ss_pred EEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccccccCCCceEECCC
Confidence 999887654 6899977542 2111 2445543 6666666 9999999 9
Q ss_pred cEEEEEecC
Q psy11725 311 DDLWVISDR 319 (347)
Q Consensus 311 g~Lyv~snr 319 (347)
|.|||-++.
T Consensus 511 GrLWi~TDg 519 (616)
T COG3211 511 GRLWIQTDG 519 (616)
T ss_pred CCEEEEecC
Confidence 999999853
No 15
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.90 E-value=25 Score=36.64 Aligned_cols=85 Identities=9% Similarity=0.214 Sum_probs=56.1
Q ss_pred CcEEEEEECCCCcEEE---------EEEcCCC---CCCCCCccceEEEeecCCcccccccchhhhhhhcccccCCcccee
Q psy11725 8 PYAIHVFDLKTDRRIR---------KYQFRPE---DILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLK 75 (347)
Q Consensus 8 ~pkl~~~dl~td~~~~---------~~~~~~~---~~~~~s~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (347)
.-+|.++|..++++-| .....++ ++..+..+.=.+||+..++..+ -...+|--
T Consensus 381 gD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---------------idkS~~~l 445 (668)
T COG4946 381 GDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---------------IDKSEYGL 445 (668)
T ss_pred CceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---------------ecccccce
Confidence 3489999999987422 2233333 3334445556788888776211 23344556
Q ss_pred eeceecCCCCCeEEEEEcCCCcccccccccccceeceEEEEcc
Q psy11725 76 VLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWF 118 (347)
Q Consensus 76 ~~~~~~~~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~ 118 (347)
++++.|+|.+.-+||- -+. +-.+.++-.||..
T Consensus 446 Itdf~~~~nsr~iAYa---fP~--------gy~tq~Iklydm~ 477 (668)
T COG4946 446 ITDFDWHPNSRWIAYA---FPE--------GYYTQSIKLYDMD 477 (668)
T ss_pred eEEEEEcCCceeEEEe---cCc--------ceeeeeEEEEecC
Confidence 8999999999999998 433 5566778888876
No 16
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.42 E-value=3 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.0
Q ss_pred eecCcceEEc-CcEEEEEecCCc
Q psy11725 300 LIFPSDVKVV-GDDLWVISDRMP 321 (347)
Q Consensus 300 l~wpd~~~i~-~g~Lyv~snrl~ 321 (347)
|.+|.|++++ +|.|||+-..-|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCT
T ss_pred CcCCcEEEEeCCCCEEEEECCCC
Confidence 5689999999 999999975443
No 17
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.75 E-value=4.9 Score=24.86 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.4
Q ss_pred ccceeEeccCccEeeccCCCCeeEE
Q psy11725 254 HLTSHVMDHNGILYFNLIDRNAVGC 278 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~~~aI~c 278 (347)
...|+++|.+|+||++|-+.+.|.+
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEE
Confidence 4578899999999999998888765
No 18
>PRK02888 nitrous-oxide reductase; Validated
Probab=72.88 E-value=1.4e+02 Score=32.22 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=68.5
Q ss_pred ceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcC---CCccchhhhhcceeeecccCCCCccceeEeccCccEeec
Q psy11725 193 GIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRN---KTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFN 269 (347)
Q Consensus 193 GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n---~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~G~Ly~~ 269 (347)
..-|++++|++ ..+|-.-.-|+..-.++++-++. ..+..++.+..+++ +|. | . --.++|.+|+.|.+
T Consensus 322 sPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGl-G---P-LHTaFDg~G~ayts 391 (635)
T PRK02888 322 NPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGL-G---P-LHTAFDGRGNAYTT 391 (635)
T ss_pred CccceEECCCC----CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCC-C---c-ceEEECCCCCEEEe
Confidence 34578899985 45887777777776666655432 22222222333333 242 1 1 22345888999999
Q ss_pred cCCCCeeEEEcCCCC---CCCCceeeEEecCCceec-CcceEE------c-CcEEEEEecCCcc
Q psy11725 270 LIDRNAVGCWNSQYP---YKPENIGHIDIDNEALIF-PSDVKV------V-GDDLWVISDRMPI 322 (347)
Q Consensus 270 ~v~~~aI~cwn~~~~---~~~~~~~~l~~d~~~l~w-pd~~~i------~-~g~Lyv~snrl~~ 322 (347)
+.-.+.|..||.++. |.-++..-|++ .-...+ |-.+.. . +|.-.+.-|++.+
T Consensus 392 lf~dsqv~kwn~~~a~~~~~g~~~~~v~~-k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~sk 454 (635)
T PRK02888 392 LFLDSQIVKWNIEAAIRAYKGEKVDPIVQ-KLDVHYQPGHNHASMGETKEADGKWLVSLNKFSK 454 (635)
T ss_pred EeecceeEEEehHHHHHHhccccCCccee-cccCCCccceeeecCCCcCCCCCCEEEEcccccc
Confidence 999999999998762 33333333332 112222 333333 3 6655577788875
No 19
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=70.56 E-value=7.5 Score=25.16 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.3
Q ss_pred CccceeEec-cCccEeeccCCCCeeEEEcCCC
Q psy11725 253 GHLTSHVMD-HNGILYFNLIDRNAVGCWNSQY 283 (347)
Q Consensus 253 s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~ 283 (347)
....|++.| ..+.||+++.....|.+.+.++
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 467889999 7899999999999999988765
No 20
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=69.82 E-value=1e+02 Score=32.59 Aligned_cols=67 Identities=13% Similarity=0.275 Sum_probs=46.7
Q ss_pred cceeEec-cCccEeeccCCCC-------------------eeEEEcCCCC---CCCCceeeEEe--c-------------
Q psy11725 255 LTSHVMD-HNGILYFNLIDRN-------------------AVGCWNSQYP---YKPENIGHIDI--D------------- 296 (347)
Q Consensus 255 ~~g~~~D-~~G~Ly~~~v~~~-------------------aI~cwn~~~~---~~~~~~~~l~~--d------------- 296 (347)
.-++.++ .+|.+|++.-+.. .|.+|++.+. ...-.+.+++. +
T Consensus 352 pEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~ 431 (524)
T PF05787_consen 352 PEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCD 431 (524)
T ss_pred ccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCccc
Confidence 4566777 6799999987665 8999998753 11112344443 2
Q ss_pred CCceecCcceEEc-CcEEEEEecCCc
Q psy11725 297 NEALIFPSDVKVV-GDDLWVISDRMP 321 (347)
Q Consensus 297 ~~~l~wpd~~~i~-~g~Lyv~snrl~ 321 (347)
...+.-||.+.|+ +|.|||.++.=.
T Consensus 432 ~~~f~sPDNL~~d~~G~LwI~eD~~~ 457 (524)
T PF05787_consen 432 DNGFASPDNLAFDPDGNLWIQEDGGG 457 (524)
T ss_pred CCCcCCCCceEECCCCCEEEEeCCCC
Confidence 3457889999999 999999985433
No 21
>KOG4499|consensus
Probab=69.47 E-value=9.8 Score=36.32 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=44.9
Q ss_pred ccceeEec-cCccEeeccCCCCeeEEEcCC---CCCCCCceeeEEe----cCCceecCcceEEc-CcEEEEEe
Q psy11725 254 HLTSHVMD-HNGILYFNLIDRNAVGCWNSQ---YPYKPENIGHIDI----DNEALIFPSDVKVV-GDDLWVIS 317 (347)
Q Consensus 254 ~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~---~~~~~~~~~~l~~----d~~~l~wpd~~~i~-~g~Lyv~s 317 (347)
.+.|++-| .....|+.+-....|-.|+-+ +.. .|-..|+. .+..-..|||+.|| +|.|||.+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~--snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL--SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccc--cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 67778878 778999999999999999833 221 12223321 12345699999999 99999997
No 22
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=69.17 E-value=5.7 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=19.7
Q ss_pred eecccCCCCccceeEeccCccEeeccC
Q psy11725 245 KIGDRGRDGHLTSHVMDHNGILYFNLI 271 (347)
Q Consensus 245 ~lG~~g~~s~~~g~~~D~~G~Ly~~~v 271 (347)
.+|..+......++++|.+|++|++=-
T Consensus 5 ~lG~~~~~~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 5 QLGGPGAQDYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred EeCCCCCceeEEEEEECCCCCEEEEEe
Confidence 455444345688999999999998743
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=63.96 E-value=27 Score=34.58 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=39.5
Q ss_pred ccceeEeccCccEeeccCCC------------CeeEEE-cCC--CCCCCCceeeEEecCCceecCcceEEc-CcEEEEEe
Q psy11725 254 HLTSHVMDHNGILYFNLIDR------------NAVGCW-NSQ--YPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS 317 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~~------------~aI~cw-n~~--~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Lyv~s 317 (347)
..-+|+.|.+|+||+++... ..|..+ +++ +.+ +...+++ + .+..|.|+.+. +| |||++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~--d~~~vfa-~--~l~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY--DKSNVFA-E--ELSMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc--ceeEEee-c--CCCCccceeEecCC-EEEeC
Confidence 66788999999999998521 256665 443 322 2233444 4 37799999998 77 99975
No 24
>KOG1520|consensus
Probab=63.78 E-value=7.2 Score=39.21 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=42.1
Q ss_pred ccceeEeccCccEeeccCCC-----------------CeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-CcEEEE
Q psy11725 254 HLTSHVMDHNGILYFNLIDR-----------------NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWV 315 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~~-----------------~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Lyv 315 (347)
-.+++.+|.+|++|||+-.. ..+.++|+.+. ...+..| .|.||.|++.. |+..-+
T Consensus 162 f~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK-----~~~VLld--~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 162 FLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK-----VTKVLLD--GLYFPNGLALSPDGSFVL 234 (376)
T ss_pred ecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCccc-----chhhhhh--cccccccccCCCCCCEEE
Confidence 56778888999999999866 22334454432 2234455 59999999998 664433
Q ss_pred Ee----cCCccc
Q psy11725 316 IS----DRMPIH 323 (347)
Q Consensus 316 ~s----nrl~~~ 323 (347)
.+ .|++++
T Consensus 235 ~~Et~~~ri~ry 246 (376)
T KOG1520|consen 235 VAETTTARIKRY 246 (376)
T ss_pred EEeeccceeeee
Confidence 32 677775
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.69 E-value=15 Score=36.29 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=43.5
Q ss_pred cceeEeccCccEeeccCCC-------------------CeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-CcEEE
Q psy11725 255 LTSHVMDHNGILYFNLIDR-------------------NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLW 314 (347)
Q Consensus 255 ~~g~~~D~~G~Ly~~~v~~-------------------~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Ly 314 (347)
..++..+.+|.||++.-.. ..|.+++|++. .+++++. -++-|-|+.++ +|.||
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~----~~e~~a~---G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG----KLRVVAH---GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC----eEEEEec---CcCCCccceECCCCCEE
Confidence 5688888999999966532 35778888763 2456553 37899999999 99999
Q ss_pred EEecC
Q psy11725 315 VISDR 319 (347)
Q Consensus 315 v~snr 319 (347)
++.|.
T Consensus 199 ~tdn~ 203 (367)
T TIGR02604 199 FCDND 203 (367)
T ss_pred EEccC
Confidence 98773
No 26
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.64 E-value=32 Score=33.63 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=52.1
Q ss_pred CccceeEeccCccEeeccCCCCeeEEEcCCC-CCCCCceeeEEe-cCCceecCcceEEc-CcEEEEEecCCcccccCCCC
Q psy11725 253 GHLTSHVMDHNGILYFNLIDRNAVGCWNSQY-PYKPENIGHIDI-DNEALIFPSDVKVV-GDDLWVISDRMPIHLESELN 329 (347)
Q Consensus 253 s~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~-~~~~~~~~~l~~-d~~~l~wpd~~~i~-~g~Lyv~snrl~~~~~~~~d 329 (347)
+.--|..++.+|...+++-.. +|.+.++.+ +++ .+.+-.. -+..| ....+| +|.|||+.. .=.+|.+|
T Consensus 104 a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--~f~lp~~~a~~nl---et~vfD~~G~lWFt~q---~G~yGrLd 174 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--RFPLPLEHADANL---ETAVFDPWGNLWFTGQ---IGAYGRLD 174 (353)
T ss_pred CCCceEEECCCCCeeEecCcc-eeEEecCcccceE--EeecccccCCCcc---cceeeCCCccEEEeec---cccceecC
Confidence 567888999999999999987 999999854 221 0111000 00111 223566 899999975 33446777
Q ss_pred CCcccEEEEEeec
Q psy11725 330 FNDVNFRIFTVPL 342 (347)
Q Consensus 330 ~~e~nfrI~r~~v 342 (347)
....-.+||+++.
T Consensus 175 Pa~~~i~vfpaPq 187 (353)
T COG4257 175 PARNVISVFPAPQ 187 (353)
T ss_pred cccCceeeeccCC
Confidence 7777777777653
No 27
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.59 E-value=17 Score=36.25 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=24.5
Q ss_pred cCcEEEEEECCCCcEEEEEEcCCCCCCCCCccceEEEe
Q psy11725 7 CPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVD 44 (347)
Q Consensus 7 ~~pkl~~~dl~td~~~~~~~~~~~~~~~~s~~~~~~vd 44 (347)
.+-.|++||++|+++|+|++++.+ ...|.|-
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vs 297 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVS 297 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEE
T ss_pred CceEEEEEECCCCeEEEEEeCCCc-------cceEEEc
Confidence 455799999999999999999875 3356664
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=59.37 E-value=27 Score=34.15 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=49.6
Q ss_pred ccceeEecc----CccEeeccCCC--------CeeEEEcCCCC-CCCCceeeEEecCC----ceecCcceEEc-CcEEEE
Q psy11725 254 HLTSHVMDH----NGILYFNLIDR--------NAVGCWNSQYP-YKPENIGHIDIDNE----ALIFPSDVKVV-GDDLWV 315 (347)
Q Consensus 254 ~~~g~~~D~----~G~Ly~~~v~~--------~aI~cwn~~~~-~~~~~~~~l~~d~~----~l~wpd~~~i~-~g~Lyv 315 (347)
-.-|++.+. ++.||+..... +.|.+|.-... -.....++|+.+.+ .--+..+|.++ ||+|||
T Consensus 50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYv 129 (331)
T PF07995_consen 50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYV 129 (331)
T ss_dssp SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEE
T ss_pred CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEE
Confidence 457778885 59999888854 68888865432 22223455554422 23466678888 999999
Q ss_pred EecCCcccccCCCCCCcccEEEEEeec
Q psy11725 316 ISDRMPIHLESELNFNDVNFRIFTVPL 342 (347)
Q Consensus 316 ~snrl~~~~~~~~d~~e~nfrI~r~~v 342 (347)
++-.-.. .....+.+...-.|+|++.
T Consensus 130 s~G~~~~-~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 130 SVGDGGN-DDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp EEB-TTT-GGGGCSTTSSTTEEEEEET
T ss_pred EeCCCCC-cccccccccccceEEEecc
Confidence 9843332 1112334444556788764
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.27 E-value=2e+02 Score=28.82 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.0
Q ss_pred cEEEEEECCCCcEEEEEEcCCC
Q psy11725 9 YAIHVFDLKTDRRIRKYQFRPE 30 (347)
Q Consensus 9 pkl~~~dl~td~~~~~~~~~~~ 30 (347)
-.|-+||++|.++++++++|+.
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred CEEEEEECccCcEEeEEccCCC
Confidence 4689999999999999999976
No 30
>KOG1214|consensus
Probab=59.14 E-value=42 Score=37.37 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=75.0
Q ss_pred eeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEec-cCccEeeccCCCCeeEEEcCCCCCC
Q psy11725 208 KNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYK 286 (347)
Q Consensus 208 w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~~~ 286 (347)
+.+|+.-|+++.. .++-|.- .+ -+.+. .+| -+.-.|+++| ..-|+|+++-..+.|..-.-++.+.
T Consensus 1037 ~mvyWtDv~g~SI---~rasL~G---~E----p~ti~---n~~-L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~r 1102 (1289)
T KOG1214|consen 1037 RMVYWTDVAGRSI---SRASLEG---AE----PETIV---NSG-LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSER 1102 (1289)
T ss_pred ceEEEeecCCCcc---ccccccC---CC----Cceee---ccc-CCCccceeeeeccceeeeeccccchhheeecCCcee
Confidence 5689999998654 3433321 11 01111 122 2466899999 8899999999999999988887763
Q ss_pred CCceeeEEecCCceecCcceEEc--CcEEEEEe-cCCcccccCCCCCCcccEEEEE
Q psy11725 287 PENIGHIDIDNEALIFPSDVKVV--GDDLWVIS-DRMPIHLESELNFNDVNFRIFT 339 (347)
Q Consensus 287 ~~~~~~l~~d~~~l~wpd~~~i~--~g~Lyv~s-nrl~~~~~~~~d~~e~nfrI~r 339 (347)
++|+.- .|.=|-++.+| .|+||-+- ||=.-.+ ++.+.+..|=||+-
T Consensus 1103 ----kvLf~t--dLVNPR~iv~D~~rgnLYwtDWnRenPkI-ets~mDG~NrRili 1151 (1289)
T KOG1214|consen 1103 ----KVLFYT--DLVNPRAIVVDPIRGNLYWTDWNRENPKI-ETSSMDGENRRILI 1151 (1289)
T ss_pred ----eEEEee--cccCcceEEeecccCceeeccccccCCcc-eeeccCCccceEEe
Confidence 456653 58899999999 99999985 5555443 24455566666663
No 31
>KOG4659|consensus
Probab=58.64 E-value=23 Score=41.04 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=51.7
Q ss_pred CccceeEec-cCccEeeccCCCCeeEEEcCCCCC-CCCceeeEE-------------------ecCCceecCcceEEc-C
Q psy11725 253 GHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPY-KPENIGHID-------------------IDNEALIFPSDVKVV-G 310 (347)
Q Consensus 253 s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~~-~~~~~~~l~-------------------~d~~~l~wpd~~~i~-~ 310 (347)
+..=-+++| -+|.||+++.+...|.+-..-.+- ...|.++|+ +| ..|.+|-|++|| +
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~d-A~L~~PkGIa~dk~ 485 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQD-AQLIFPKGIAFDKM 485 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhccc-ceeccCCceeEccC
Confidence 455668889 899999999999999887543221 234666665 45 468899999999 9
Q ss_pred cEEEEEecCCcc
Q psy11725 311 DDLWVISDRMPI 322 (347)
Q Consensus 311 g~Lyv~snrl~~ 322 (347)
|.||+.-.++-+
T Consensus 486 g~lYfaD~t~IR 497 (1899)
T KOG4659|consen 486 GNLYFADGTRIR 497 (1899)
T ss_pred CcEEEecccEEE
Confidence 999998665544
No 32
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=58.49 E-value=1.7e+02 Score=27.82 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=39.0
Q ss_pred ceeEeccCc-cEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-Cc-EEEEEecCCc
Q psy11725 256 TSHVMDHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVISDRMP 321 (347)
Q Consensus 256 ~g~~~D~~G-~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g-~Lyv~snrl~ 321 (347)
.++.++.+| .||.++-..+.|..|+.+..- ..+.++..- +.-.+|.++.+. +| +||+. |+..
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~--~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va-~~~~ 295 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDG--SVLSFEGHQ-PTETQPRGFNIDHSGKYLIAA-GQKS 295 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCC--CeEEEeEEE-eccccCCceEECCCCCEEEEE-EccC
Confidence 356677655 589888888999999875321 112333332 234689999998 65 77774 4533
No 33
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=57.14 E-value=4.9 Score=37.11 Aligned_cols=36 Identities=47% Similarity=0.866 Sum_probs=21.8
Q ss_pred CcccccccchhhhhhhcccccCCccceeeeceecCCCCC
Q psy11725 48 NNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKED 86 (347)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (347)
+..+++..||++ +.+.. -..+.+.|+||+.|++..|
T Consensus 178 n~~~~l~~~~~~-~~~~~--~~~~~~~k~LGl~W~~~~D 213 (213)
T cd01644 178 NSQEVLDDLPEE-RVLLD--RDSDVTEKTLGLRWNPKTD 213 (213)
T ss_pred Cchhhhhccccc-ccccc--cccccchhcccceeeccCC
Confidence 445555666654 11111 1334578999999999875
No 34
>KOG0268|consensus
Probab=57.11 E-value=15 Score=36.85 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=51.7
Q ss_pred cccCcEEEEEECCCCcEEEEEEcCCCCCCCC-------Cccce-------EEEeecCCcccccccchhhhhhhcccccCC
Q psy11725 5 QICPYAIHVFDLKTDRRIRKYQFRPEDILPG-------TFIAN-------IAVDFASNNLDILKSIPEEQRMLSEVEWGS 70 (347)
Q Consensus 5 ~~~~pkl~~~dl~td~~~~~~~~~~~~~~~~-------s~~~~-------~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (347)
..|+.+|-+||+.-+..++.+....+.+..- +.|.. +..|.+.+. .|+. =
T Consensus 163 aTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~K--------------V 226 (433)
T KOG0268|consen 163 ATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKK--------------V 226 (433)
T ss_pred cccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC--ccce--------------e
Confidence 4699999999999999888888877633221 11111 122322211 1111 1
Q ss_pred ccceeeeceecCCCCCeEEEEEcCCCcccccccccccceeceEEEEcc
Q psy11725 71 DSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWF 118 (347)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~ 118 (347)
-..++.=++.||| ++|.|. + ++-...+..||..
T Consensus 227 i~~mRTN~IswnP--eafnF~---~----------a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 227 ILTMRTNTICWNP--EAFNFV---A----------ANEDHNLYTYDMR 259 (433)
T ss_pred eeeccccceecCc--ccccee---e----------ccccccceehhhh
Confidence 1344566799999 889888 6 4556678888864
No 35
>KOG4499|consensus
Probab=56.23 E-value=22 Score=34.07 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.6
Q ss_pred CccceeEeccCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecC----cceEEc-C--cEEEEEecC
Q psy11725 253 GHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFP----SDVKVV-G--DDLWVISDR 319 (347)
Q Consensus 253 s~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wp----d~~~i~-~--g~Lyv~snr 319 (347)
...|||.+|..|+||++-.+-..|.+.||.+. .+|. +++.| ++..++ . ..||+++++
T Consensus 212 ~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG------K~L~----eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 212 LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG------KILL----EIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCCcceEccCCcEEEEEecCcEEEEECCCCC------cEEE----EEEcCCCceEEEEecCCCccEEEEEehh
Confidence 47899999999999999999999999998753 1221 23444 223333 2 479999864
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.48 E-value=27 Score=34.20 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=41.2
Q ss_pred ccceeEeccCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecC-----CceecCcceEEcCcEEEEEe---cCCccc
Q psy11725 254 HLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN-----EALIFPSDVKVVGDDLWVIS---DRMPIH 323 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~-----~~l~wpd~~~i~~g~Lyv~s---nrl~~~ 323 (347)
-..|+....+|.+||+++..|+|.+.||-.-. + +++.+.+ -|=+|.|. .|.+|+++ -++++|
T Consensus 190 gpyGi~atpdGsvwyaslagnaiaridp~~~~-a---ev~p~P~~~~~gsRriwsdp----ig~~wittwg~g~l~rf 259 (353)
T COG4257 190 GPYGICATPDGSVWYASLAGNAIARIDPFAGH-A---EVVPQPNALKAGSRRIWSDP----IGRAWITTWGTGSLHRF 259 (353)
T ss_pred CCcceEECCCCcEEEEeccccceEEcccccCC-c---ceecCCCcccccccccccCc----cCcEEEeccCCceeeEe
Confidence 55788888999999999999999999986532 1 2333321 12334443 46788886 355554
No 37
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=49.49 E-value=1.7e+02 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCceeEEEeCCCC---CCCceeeeEee
Q psy11725 191 PEGIFGIALTPPE---ADGFKNLLFHP 214 (347)
Q Consensus 191 ~~GV~giaL~p~~---~~g~w~LYf~~ 214 (347)
..|.+++|+.|+- +...| +|+..
T Consensus 78 e~GLlglal~PdF~~~~~n~~-lYvsy 103 (454)
T TIGR03606 78 HNGLLGLALHPDFMQEKGNPY-VYISY 103 (454)
T ss_pred CCceeeEEECCCccccCCCcE-EEEEE
Confidence 4699999999986 44434 77543
No 38
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=47.64 E-value=72 Score=32.35 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCccceeEec-cCccEeeccCCCCeeEEEcCCCCCCCCceeeEEe-cCCcee-cCcceEEc-----CcEEEEEec---CC
Q psy11725 252 DGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI-DNEALI-FPSDVKVV-----GDDLWVISD---RM 320 (347)
Q Consensus 252 ~s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~-d~~~l~-wpd~~~i~-----~g~Lyv~sn---rl 320 (347)
.+|..|++.| ..|.||+++-+ .+|.+++-+-.-... -.+++. +.+.|. =.-|+.+- .|||.+++- .+
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~-~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGND-RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S---EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCc-ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 3699999999 99999999977 578777654211111 123322 323331 24466663 467777763 34
Q ss_pred cccccCCCCCCcccEEEE
Q psy11725 321 PIHLESELNFNDVNFRIF 338 (347)
Q Consensus 321 ~~~~~~~~d~~e~nfrI~ 338 (347)
.-|--..-+.-...|+|-
T Consensus 285 ~Vy~r~~~~~~~g~f~i~ 302 (381)
T PF02333_consen 285 AVYDREGPNAYVGSFRIG 302 (381)
T ss_dssp EEEESSTT--EEEEEEEE
T ss_pred EEEecCCCCcccceEEec
Confidence 434222222334556664
No 39
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=44.33 E-value=2.8e+02 Score=26.25 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=58.6
Q ss_pred ceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEeccC-ccEeeccC
Q psy11725 193 GIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHN-GILYFNLI 271 (347)
Q Consensus 193 GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~-G~Ly~~~v 271 (347)
+..+++++|++ ..+|...+.....+....+- +..+.. .....+.. ..| ....+++++.+ ..+|..+.
T Consensus 127 ~~~~~~~~p~g----~~l~v~~~~~~~v~v~d~~~--~g~l~~--~~~~~~~~--~~g--~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 127 GCHSANIDPDN----RTLWVPCLKEDRIRLFTLSD--DGHLVA--QEPAEVTT--VEG--AGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccEeEeCCCC----CEEEEeeCCCCEEEEEEECC--CCcccc--cCCCceec--CCC--CCCceEEECCCCCEEEEEec
Confidence 44567788764 34777777666664443321 111110 00001110 112 23456788855 45788888
Q ss_pred CCCeeEEEcCCC---CCCCCceeeEE---ecCCceecCcceEEc-Cc-EEEEEecCCc
Q psy11725 272 DRNAVGCWNSQY---PYKPENIGHID---IDNEALIFPSDVKVV-GD-DLWVISDRMP 321 (347)
Q Consensus 272 ~~~aI~cwn~~~---~~~~~~~~~l~---~d~~~l~wpd~~~i~-~g-~Lyv~snrl~ 321 (347)
..+.|.+|+.+. .+. -+..+. .+...-.||.++.+. +| +||+. |+..
T Consensus 195 ~~~~v~v~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~ 249 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIE--CVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTA 249 (330)
T ss_pred CCCEEEEEEEeCCCCCEE--EEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCC
Confidence 789999998762 220 011111 000112488888888 54 78885 5544
No 40
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.73 E-value=39 Score=22.02 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.4
Q ss_pred CcEEEEEECCCCcEEEEEEcCCCC
Q psy11725 8 PYAIHVFDLKTDRRIRKYQFRPED 31 (347)
Q Consensus 8 ~pkl~~~dl~td~~~~~~~~~~~~ 31 (347)
.-.|+++|.+|++++=+|+....+
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSGG
T ss_pred CCEEEEEECCCCCEEEeeeCCCCC
Confidence 457999999999999999987753
No 41
>KOG0650|consensus
Probab=41.12 E-value=1.7e+02 Score=31.58 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=72.1
Q ss_pred EEEEECCCCcEEEEEEcCCCC----CCCCCccceEEEeecC---------C-------cccccccc-hhhhhhhcccccC
Q psy11725 11 IHVFDLKTDRRIRKYQFRPED----ILPGTFIANIAVDFAS---------N-------NLDILKSI-PEEQRMLSEVEWG 69 (347)
Q Consensus 11 l~~~dl~td~~~~~~~~~~~~----~~~~s~~~~~~vd~~~---------~-------~~~~~~~~-~~~~~~~~~~~~~ 69 (347)
+-+|-+.|++-|++++|...+ ..|++-+-=|+|-+.. + ..+++.+. +|++.-.++|-|.
T Consensus 424 vriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 424 VRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWS 503 (733)
T ss_pred EEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeec
Confidence 457999999999999998864 2344333223332222 1 34566666 4667777888997
Q ss_pred Ccc----c----e------eeeceecCCCCCeEEEEEcCCCcccccccccccceeceEEEEccCCceeeeecCCCCCCC-
Q psy11725 70 SDS----Y----L------KVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADG- 134 (347)
Q Consensus 70 ~~~----~----~------~~~~~~~~~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~~dGi~giaL~p~~~~~- 134 (347)
+++ + + ++=-+.||+..|-++-+ .. +..+-+.++.+|. .+ .+.+|..+..
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV---~~---------~~~~~~VliHQLS-K~---~sQ~PF~kskG 567 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV---MP---------DSGNKSVLIHQLS-KR---KSQSPFRKSKG 567 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeecCCceEEEe---cc---------CCCcceEEEEecc-cc---cccCchhhcCC
Confidence 761 1 1 12237899999988765 31 3345677888887 53 4455643221
Q ss_pred -CceeeeccCC
Q psy11725 135 -FKNLLFHPIA 144 (347)
Q Consensus 135 -~R~l~fhpla 144 (347)
-....|||..
T Consensus 568 ~vq~v~FHPs~ 578 (733)
T KOG0650|consen 568 LVQRVKFHPSK 578 (733)
T ss_pred ceeEEEecCCC
Confidence 1335699953
No 42
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.79 E-value=3.8e+02 Score=26.45 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=44.4
Q ss_pred ccceeEec-cCccEeeccCCCCeeEEEcCCCC------CCCCceeeEEecCCceecCcceEEc-CcEEEEEe--cCCccc
Q psy11725 254 HLTSHVMD-HNGILYFNLIDRNAVGCWNSQYP------YKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS--DRMPIH 323 (347)
Q Consensus 254 ~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~------~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Lyv~s--nrl~~~ 323 (347)
-.+|..+| .+|.|++=.=+...+.--+..+. ....+..+ -. .+.=|.|++.| +|.|||+| |.+-+|
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL-~~---dipqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGL-SS---DIPQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCC-cc---cCCCcceeEECCCCCEEEEecCCcceec
Confidence 45777788 77888877777777777666553 11112222 11 35568999999 99999998 666666
Q ss_pred c
Q psy11725 324 L 324 (347)
Q Consensus 324 ~ 324 (347)
.
T Consensus 310 ~ 310 (316)
T COG3204 310 T 310 (316)
T ss_pred c
Confidence 3
No 43
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=35.99 E-value=4.1e+02 Score=25.73 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=38.9
Q ss_pred ccceeEeccCc-cEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-Cc-EEEEEe
Q psy11725 254 HLTSHVMDHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVIS 317 (347)
Q Consensus 254 ~~~g~~~D~~G-~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g-~Lyv~s 317 (347)
...++.++.+| .||++.-..+.|.+++.+..- ..+..+-.=+-.-.||-+|.++ +| +|||..
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence 56677778555 689999999999999874321 1123332211235689999998 44 777753
No 44
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.33 E-value=1e+02 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.4
Q ss_pred cCcEEEEEECCCCcEEEEEEcCC
Q psy11725 7 CPYAIHVFDLKTDRRIRKYQFRP 29 (347)
Q Consensus 7 ~~pkl~~~dl~td~~~~~~~~~~ 29 (347)
..-.|.+||+++.++++++....
T Consensus 12 ~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCEEEEEECCCCeEEEEEECCC
Confidence 35689999999999999998854
No 45
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=29.74 E-value=5.2e+02 Score=25.01 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=54.6
Q ss_pred eEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEeccC-ccEeeccCCC
Q psy11725 195 FGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHN-GILYFNLIDR 273 (347)
Q Consensus 195 ~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~-G~Ly~~~v~~ 273 (347)
-++..+|++ +.+|-.-+.....+....+--. ..+.. ...++. ..| +-.-.++++.+ ..+|+..-..
T Consensus 147 H~v~~~pdg----~~v~v~dlG~D~v~~~~~~~~~-~~l~~----~~~~~~--~~G--~GPRh~~f~pdg~~~Yv~~e~s 213 (345)
T PF10282_consen 147 HQVVFSPDG----RFVYVPDLGADRVYVYDIDDDT-GKLTP----VDSIKV--PPG--SGPRHLAFSPDGKYAYVVNELS 213 (345)
T ss_dssp EEEEE-TTS----SEEEEEETTTTEEEEEEE-TTS--TEEE----EEEEEC--STT--SSEEEEEE-TTSSEEEEEETTT
T ss_pred eeEEECCCC----CEEEEEecCCCEEEEEEEeCCC-ceEEE----eecccc--ccC--CCCcEEEEcCCcCEEEEecCCC
Confidence 356777774 3477777777666444331100 00110 011111 122 23345677755 5688888888
Q ss_pred CeeEEEcCCCC-CCCCceeeEEec---CCceecCcceEEc-Cc-EEEEEecCCcc
Q psy11725 274 NAVGCWNSQYP-YKPENIGHIDID---NEALIFPSDVKVV-GD-DLWVISDRMPI 322 (347)
Q Consensus 274 ~aI~cwn~~~~-~~~~~~~~l~~d---~~~l~wpd~~~i~-~g-~Lyv~snrl~~ 322 (347)
+.|..++.+.+ -...-.+.+..- ...-.+|.++.+. +| +||+ +||-+.
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv-snr~~~ 267 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV-SNRGSN 267 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE-EECTTT
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE-EeccCC
Confidence 88888876521 110111222211 1111388999998 66 6777 555543
No 46
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=29.30 E-value=2.5e+02 Score=27.33 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=36.8
Q ss_pred ccceeEeccCccEeeccCC-------------CCeeEEEcCCCCCCCC---------ceeeEEecCCceecCcceEEc-C
Q psy11725 254 HLTSHVMDHNGILYFNLID-------------RNAVGCWNSQYPYKPE---------NIGHIDIDNEALIFPSDVKVV-G 310 (347)
Q Consensus 254 ~~~g~~~D~~G~Ly~~~v~-------------~~aI~cwn~~~~~~~~---------~~~~l~~d~~~l~wpd~~~i~-~ 310 (347)
...++.++.+|.||++-=. ..+|.+.++++..... +.++.+.= |+=|=++.++ .
T Consensus 115 ~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~ 191 (331)
T PF07995_consen 115 NGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPN 191 (331)
T ss_dssp -EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETT
T ss_pred CCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeC---CCccccEEEECC
Confidence 3455788899999986322 2567788777531111 12344432 4556678888 5
Q ss_pred -cEEEEEec
Q psy11725 311 -DDLWVISD 318 (347)
Q Consensus 311 -g~Lyv~sn 318 (347)
|.||+.-|
T Consensus 192 tg~l~~~d~ 200 (331)
T PF07995_consen 192 TGRLWAADN 200 (331)
T ss_dssp TTEEEEEEE
T ss_pred CCcEEEEcc
Confidence 99999865
No 47
>KOG1214|consensus
Probab=28.18 E-value=1.1e+02 Score=34.14 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=57.2
Q ss_pred CccceeEec-cCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc--CcEEEEEecCCcccccCCCC
Q psy11725 253 GHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHLESELN 329 (347)
Q Consensus 253 s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~--~g~Lyv~snrl~~~~~~~~d 329 (347)
+.--|+.+| ..-.+|.+++.-.+|.+-.-.+.- .+.++. ..|.-|.|++|| ..++|-+-+.+.+.--..+|
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~E----p~ti~n--~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld 1098 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAE----PETIVN--SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLD 1098 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCC----Cceeec--ccCCCccceeeeeccceeeeeccccchhheeecC
Confidence 366788999 999999999999999987766532 245553 369999999999 77899888877775333444
Q ss_pred CCcccE
Q psy11725 330 FNDVNF 335 (347)
Q Consensus 330 ~~e~nf 335 (347)
-.+...
T Consensus 1099 G~~rkv 1104 (1289)
T KOG1214|consen 1099 GSERKV 1104 (1289)
T ss_pred CceeeE
Confidence 444443
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=26.60 E-value=2.3e+02 Score=24.98 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=22.9
Q ss_pred cCcEEEEEECCCCcEEEEEEcCCCCCCC
Q psy11725 7 CPYAIHVFDLKTDRRIRKYQFRPEDILP 34 (347)
Q Consensus 7 ~~pkl~~~dl~td~~~~~~~~~~~~~~~ 34 (347)
...+|+++|.+|++++-++.++..+..+
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 71 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGA 71 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSG
T ss_pred CCCEEEEEECCCCCEEEEeeccccccce
Confidence 4678999999999999999997764333
No 49
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=23.09 E-value=1.6e+02 Score=30.43 Aligned_cols=74 Identities=9% Similarity=0.176 Sum_probs=47.0
Q ss_pred CccEeeccCCC-CeeEEEc-CCCCCCCCceeeEEecCCceecCcc---------eEEc-CcEEEEEecCCcccccCCCCC
Q psy11725 263 NGILYFNLIDR-NAVGCWN-SQYPYKPENIGHIDIDNEALIFPSD---------VKVV-GDDLWVISDRMPIHLESELNF 330 (347)
Q Consensus 263 ~G~Ly~~~v~~-~aI~cwn-~~~~~~~~~~~~l~~d~~~l~wpd~---------~~i~-~g~Lyv~snrl~~~~~~~~d~ 330 (347)
.|.|.-+.-.+ --|+.++ ++- +++-++.| .|+.++-| +..+ +|.+|+.|+...+.+.+....
T Consensus 232 ~~~~~~T~ypD~a~VAVy~~~~m-----~~eKvIkd-dRts~a~Gr~~sqy~~~i~~~enGDvYvfS~s~a~~~~~~~~~ 305 (435)
T PF14298_consen 232 KGEIFWTQYPDSAWVAVYSYPNM-----KLEKVIKD-DRTSYAGGRYRSQYYNGIWKDENGDVYVFSPSYAKTMSDGKSQ 305 (435)
T ss_pred cCccccccCCCcEEEEEEeCCCC-----cEeeeEec-CCeeeccccccceeeeeeeEeCCCCEEEEcCcccccccccccc
Confidence 35555555533 3355555 332 35677788 58888743 4455 899999998877665554555
Q ss_pred CcccEEEEEeec
Q psy11725 331 NDVNFRIFTVPL 342 (347)
Q Consensus 331 ~e~nfrI~r~~v 342 (347)
...|=-|+|++-
T Consensus 306 stkPSGilRIk~ 317 (435)
T PF14298_consen 306 STKPSGILRIKK 317 (435)
T ss_pred cCCccEEEEECC
Confidence 677777887764
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=22.76 E-value=3.1e+02 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=17.9
Q ss_pred EEEEEECCCCcEEEEEEcCC
Q psy11725 10 AIHVFDLKTDRRIRKYQFRP 29 (347)
Q Consensus 10 kl~~~dl~td~~~~~~~~~~ 29 (347)
.|.++|++|++.+-++.+.+
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~ 23 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP 23 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS
T ss_pred EEEEEECCCCCEEEEEECCC
Confidence 58999999999999998854
No 51
>KOG1273|consensus
Probab=21.75 E-value=6.4e+02 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=16.0
Q ss_pred EEEEEECCCCcEEEEEEcCCC
Q psy11725 10 AIHVFDLKTDRRIRKYQFRPE 30 (347)
Q Consensus 10 kl~~~dl~td~~~~~~~~~~~ 30 (347)
++..||+..+..++++.|+..
T Consensus 88 si~lwDl~~gs~l~rirf~sp 108 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRIRFDSP 108 (405)
T ss_pred eeEEEeccCCCceeEEEccCc
Confidence 355788888888888888775
No 52
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.31 E-value=1e+02 Score=18.71 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.4
Q ss_pred CcEEEEEECCCCcEEEEE
Q psy11725 8 PYAIHVFDLKTDRRIRKY 25 (347)
Q Consensus 8 ~pkl~~~dl~td~~~~~~ 25 (347)
.-.|+++|.++++++-++
T Consensus 15 ~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 15 DGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEEcccCcEEEEc
Confidence 458999999999986553
No 53
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.70 E-value=8.5e+02 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.7
Q ss_pred CcEEEEEECCCCcEEEEEEcCCC
Q psy11725 8 PYAIHVFDLKTDRRIRKYQFRPE 30 (347)
Q Consensus 8 ~pkl~~~dl~td~~~~~~~~~~~ 30 (347)
.+.+-++|+.++++++.++.|.-
T Consensus 127 ~~~V~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 127 SPAVGVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred CCEEEEEECCCCcEEEEEeCCCC
Confidence 56789999999999999999875
No 54
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=20.69 E-value=1.9e+02 Score=22.93 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.2
Q ss_pred ceecCcceEEc--CcEEEEEe
Q psy11725 299 ALIFPSDVKVV--GDDLWVIS 317 (347)
Q Consensus 299 ~l~wpd~~~i~--~g~Lyv~s 317 (347)
.+.+|.|+.++ +.+|||.+
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~ 72 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVAS 72 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEe
Confidence 58999999999 45899876
No 55
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.59 E-value=86 Score=18.50 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.3
Q ss_pred eEEc-CcEEEEEec
Q psy11725 306 VKVV-GDDLWVISD 318 (347)
Q Consensus 306 ~~i~-~g~Lyv~sn 318 (347)
+..| +|.|||-++
T Consensus 10 i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 10 IYEDSDGNLWIGTY 23 (24)
T ss_dssp EEE-TTSCEEEEET
T ss_pred EEEcCCcCEEEEeC
Confidence 4445 788888765
No 56
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.58 E-value=99 Score=24.97 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.4
Q ss_pred cEEEEEECCCCcEEEEEE
Q psy11725 9 YAIHVFDLKTDRRIRKYQ 26 (347)
Q Consensus 9 pkl~~~dl~td~~~~~~~ 26 (347)
.-+-++|..||++||.|+
T Consensus 68 ~vVkViD~~T~eVIRqIP 85 (107)
T PF03646_consen 68 VVVKVIDKETGEVIRQIP 85 (107)
T ss_dssp EEEEEEETTT-SEEEEE-
T ss_pred EEEEEEECCCCcEEEeCC
Confidence 456789999999999875
Done!