RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11725
(347 letters)
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein. Royal jelly is the
food of queen bee larvae, and is responsible for the
high reproductive ability of the queen. Major royal
jelly proteins make up around 90% of larval jelly
proteins. This family also the sequence-related yellow
protein of drosophila which controls pigmentation of the
adult cuticle and larval mouth parts.
Length = 285
Score = 177 bits (452), Expect = 8e-54
Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 5/173 (2%)
Query: 176 DRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAE 235
D G+F I G +F +GIFG+AL+P DG + L FHP+AS ++V T VLRN+T
Sbjct: 113 DFGKFTIAGESFQL-DDGIFGLALSPRTPDG-RTLYFHPLASTRLYSVPTEVLRNETNWG 170
Query: 236 SADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI 295
+ Y + +GDR T+ +D NG+L+F L+ +NAVGCWN+ PY N+G +
Sbjct: 171 NNAQYEDFKDLGDRN--TQSTALAVDPNGVLFFGLVGQNAVGCWNTSTPYSRANLGVVAR 228
Query: 296 DNEALIFPSDVKVVGDD-LWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR 347
+++ L FPSD+K+ ++ LWV+S+RM L ++L++++VNFRI + +R
Sbjct: 229 NSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEVNFRILGANVDLLIR 281
Score = 103 bits (259), Expect = 1e-25
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 1 NTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFAS-NNLDILKSIPEE 59
KQICP + VFDL TD+ +++++ + + + N+ VD D I +
Sbjct: 26 QPPKQICPPKLLVFDLATDKLLKRFELPADVAKGNSRLVNLVVDVGDDTCDDTFVYIADA 85
Query: 60 -QRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWF 118
R L + D W + +TF D K F I G +F
Sbjct: 86 KGRGLIVYDLADDKS-------WRVEHNTFYP-----DPDFGK------FTIAGESFQL- 126
Query: 119 PEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRG 178
+GIFG+AL+P DG + L FHP+AS ++V T VLRN+T + Y + +GDR
Sbjct: 127 DDGIFGLALSPRTPDG-RTLYFHPLASTRLYSVPTEVLRNETNWGNNAQYEDFKDLGDRN 185
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in
retrotransposons. This subfamily represents the RT
domain of a multifunctional enzyme. C-terminal to the RT
domain is a domain homologous to aspartic proteinases
(corresponding to Merops family A17) encoded by
retrotransposons and retroviruses. RT catalyzes DNA
replication from an RNA template and is responsible for
the replication of retroelements.
Length = 213
Score = 39.2 bits (92), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 44 DFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKED 86
+ASN+ ++L +PEE+ +L SD K LG++WNPK D
Sbjct: 174 KWASNSQEVLDDLPEERVLLDRD---SDVTEKTLGLRWNPKTD 213
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 29.6 bits (67), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 41 IAVDFASNNLDILKSIPEEQRML 63
+A++ A N+L LK IP E R+L
Sbjct: 35 LAINTAKNDLKGLKHIPAEDRIL 57
>gnl|CDD|239870 cd04405, RhoGAP_BRCC3-like, RhoGAP_BRCC3-like: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of BRCC3-like proteins. This subgroup
also contains two groups of closely related proteins,
BRCC3 and DEPDC7, which both contain a C-terminal
RhoGAP-like domain and an N-terminal DEP (Disheveled,
Egl-10, and Pleckstrin) domain. The function(s) of
BRCC3 and DEPDC7 are unknown. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 235
Score = 28.8 bits (65), Expect = 3.5
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 23/83 (27%)
Query: 79 IQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHW----------FPEGI-----F 123
I +N D ++ + R ++ F+ L HW +P+ +
Sbjct: 41 ISYNMDPDVYT-------SNYLDREVVKLFSKSQLD-HWLLSAMDCLANWPDQLVVDVSR 92
Query: 124 GIALTPPEADGFKNLLFHPIASH 146
+ GFK LLF IA +
Sbjct: 93 PLYSQHDMLSGFKRLLFKTIAKY 115
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase. In many
widely different species, including E. coli, Thermotoga
maritima, and Archaeoglobus fulgidus, this enzymatic
domain (anthranilate phosphoribosyltransferase) is found
C-terminal to glutamine amidotransferase; the fusion
protein is designated anthranilate synthase component II
(EC 4.1.3.27) [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 330
Score = 28.8 bits (65), Expect = 3.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
V +LK D IR+Y PED LP + +A N +IL+ I
Sbjct: 230 TVAELK-DGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDI 274
>gnl|CDD|105710 PRK12514, PRK12514, RNA polymerase sigma factor; Provisional.
Length = 179
Score = 27.9 bits (62), Expect = 6.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 221 FAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRN 274
F + RVL++++ AE A + YVKI + V + + + I RN
Sbjct: 33 FGICLRVLKDRSEAEEALQ-DVYVKIWTKAD----RFAVSGLSPMTWLITIARN 81
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 28.4 bits (64), Expect = 6.5
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 275 AVGCWNSQYP------YKPENIGHIDIDNEAL--IFPSDVKVVGD 311
AVG P I HIDID + +P DV +VGD
Sbjct: 272 AVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316
>gnl|CDD|162945 TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase
domain. All proteins that score above the trusted
cutoff score of 45 to this model are large proteins of
either Pirellula sp. 1 or Verrucomicrobium spinosum.
These proteins all contain, in addition to this domain,
several hundred residues of highly variable sequence,
and then a well-conserved C-terminal domain (TIGR02603)
that features a putative cytochrome c-type heme binding
motif CXXCH. The membrane-bound L-sorbosone
dehydrogenase from Acetobacter liquefaciens
(Gluconacetobacter liquefaciens) (SP|Q44091) is
homologous to this domain but lacks additional sequence
regions shared by members of this family and belongs to
a different clade of the larger family of homologs. It
and its closely related homologs are excluded from the
this model by scoring between the trusted (45) and noise
(18) cutoffs.
Length = 367
Score = 28.1 bits (63), Expect = 6.6
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 60 QRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFP 119
L+ + WG D + +N S S S +GG F + P
Sbjct: 123 HHSLNSLAWGPDG-----WLYFNHGNTLASK------VTRPGTSDESRQGLGGGLFRYNP 171
Query: 120 EGI-FGIALTPPEADGFKNLLFHPIASHSEFAVS 152
+G A GF+N H + S +
Sbjct: 172 DGGKLR-----VVAHGFQNPYGHSVDSWGDVFFC 200
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase;
Provisional.
Length = 339
Score = 28.1 bits (64), Expect = 7.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
V +LK D IR+Y PED LP + ++ N IL+++
Sbjct: 234 TVAELK-DGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAV 278
>gnl|CDD|222357 pfam13742, tRNA_anti_2, OB-fold nucleic acid binding domain. This
family contains OB-fold domains that bind to nucleic
acids.
Length = 97
Score = 26.3 bits (59), Expect = 8.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 262 HNGILYFNLIDRNAV---GCWNSQYPY 285
+G LYF L D++A W S+
Sbjct: 36 RSGHLYFELKDKDASIRAVIWRSRARR 62
>gnl|CDD|131069 TIGR02014, BchZ, chlorophyllide reductase subunit Z. This model
represents the Z subunit of the three-subunit enzyme,
(bacterio)chlorophyllide reductase. This enzyme is
responsible for the reduction of the chlorin B-ring and
is closely related to the protochlorophyllide reductase
complex which reduces the D-ring. Both of these
complexes in turn are homologous to nitrogenase [Energy
metabolism, Photosynthesis].
Length = 468
Score = 28.0 bits (62), Expect = 8.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 112 GLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTR 154
+T +F FGI + A G +++L + F+++ +
Sbjct: 272 SVTQDFFGTARFGIVASETYARGIRHVLEDELGLPCLFSLARK 314
Score = 28.0 bits (62), Expect = 8.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 184 GLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTR 226
+T +F FGI + A G +++L + F+++ +
Sbjct: 272 SVTQDFFGTARFGIVASETYARGIRHVLEDELGLPCLFSLARK 314
>gnl|CDD|235846 PRK06654, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 181
Score = 27.5 bits (61), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 28 RPEDILPGTFIANIAVDFASNNLDILKSI 56
D P TF+ +A+ +A NN +IL +
Sbjct: 94 NTADTPPKTFVVKLALGYAENNKNILNEL 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,111,842
Number of extensions: 1763998
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 20
Length of query: 347
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 249
Effective length of database: 6,590,910
Effective search space: 1641136590
Effective search space used: 1641136590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)