RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11725
(347 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 146 bits (369), Expect = 7e-41
Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 169 NAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVL 228
+ K +F+ GG + + GIFGI L +++G + + ++ ++V+T+ L
Sbjct: 198 HPTFKAERPTKFDYGGKEYEF-KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKEL 256
Query: 229 RNKTLAESADSYNAYVKIGDRGRDGHLTSH-VMDHNGILYFNLIDRNAVGCWNSQYPYKP 287
+ K + + +G+RG+ + +++F + V CWN+Q
Sbjct: 257 KQKGGKLNPEL------LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLR 310
Query: 288 ENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPIHLESE-LNFNDVNFRIFTV-PLQE 344
+ + +F +D+ V LW +S+ P +SE ++ +R+ + QE
Sbjct: 311 MKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQE 370
Query: 345 AVR 347
A+
Sbjct: 371 AIA 373
Score = 84.0 bits (207), Expect = 3e-18
Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 35/190 (18%)
Query: 1 NTTKQICPYA---IHVFDLKTDR--RIRKYQFRPEDILPGTFIANIAVDFASNNLDILKS 55
+ + P I +DLK + +Y F + T+ AVD A+ D ++
Sbjct: 112 SRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSET 171
Query: 56 IP----EEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIG 111
+ L + V + + ++F+ G
Sbjct: 172 FVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERP-------------------TKFDYG 212
Query: 112 GLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAY 171
G + + GIFGI L +++G + + ++ ++V+T+ L+ K + +
Sbjct: 213 GKEYEF-KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPEL---- 267
Query: 172 VKIGDRGEFN 181
+G+RG++N
Sbjct: 268 --LGNRGKYN 275
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 80.2 bits (197), Expect = 4e-17
Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 25/182 (13%)
Query: 176 DRGEFNIGGLTFHWFPE---------GIFGIALTPPEADGFKNLLFHPIASHSEFAVSTR 226
+ + I G+ G+ GI L + + L P+ S S + + +
Sbjct: 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA---EN-EWLYLSPMHSTSMYRIKSA 225
Query: 227 VLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYK 286
L N L ++ KI +D + +Y + +A+G S
Sbjct: 226 DLSNLQLTDAELGS----KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS----- 276
Query: 287 PENIGHIDIDNEALIFPSDVKVVGD-DLWVISDRMP--IHLESELNFNDVNFRIFTVPLQ 343
+ + + +E L + D L+ +++ L + N + + IF +
Sbjct: 277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPL 336
Query: 344 EA 345
A
Sbjct: 337 AA 338
Score = 65.2 bits (158), Expect = 4e-12
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 13/167 (7%)
Query: 3 TKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRM 62
+ + +D ++ R P L +F+ ++AVD N + I P+++
Sbjct: 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146
Query: 63 LSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGI 122
L V+ + +VL + D + G T G+
Sbjct: 147 LIRVDLQTGLAARVL-------QGYPGIAPEDIDLVIDGVPVQIGQPDG--TVIRPHLGV 197
Query: 123 FGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYN 169
GI L + + L P+ S S + + + L N L ++
Sbjct: 198 NGIVLDA---EN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 45/365 (12%), Positives = 94/365 (25%), Gaps = 140/365 (38%)
Query: 1 NTTKQICPYAIHVFDLKTDRRIRK--YQFRPEDIL-----PG---TFIANIAVDFASNNL 50
N + Y +V L+ ++R+ + RP + G T++A L
Sbjct: 121 NDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA----------L 168
Query: 51 DILKSIPEEQRMLSEVEW---GS-DSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILS 106
D+ S + +M ++ W + +S VL + + S+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSR----- 216
Query: 107 EFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLF----HPIA-------SHSE----FAV 151
+ I L L + +++ F +
Sbjct: 217 ------------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 152 STRVL---RNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALT------PP 202
S ++L R K + + + + + LT + + L P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPR 320
Query: 203 EADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDH 262
E L +P +S I + RDG T
Sbjct: 321 EV-----LTTNP------RRLSI--------------------IAESIRDGLATWD---- 345
Query: 263 NGILYFNLIDRNAVG-----CWNSQYPYKPENIGHIDIDNEAL-----IFPSDVKV---V 309
+ ++ + + N P + + +FP + +
Sbjct: 346 ----NWKHVNCDKLTTIIESSLNVLEPA----------EYRKMFDRLSVFPPSAHIPTIL 391
Query: 310 GDDLW 314
+W
Sbjct: 392 LSLIW 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 44/266 (16%), Positives = 71/266 (26%), Gaps = 112/266 (42%)
Query: 71 DSYLK-VLG------IQWNPKEDTFSF----------------CVNLSDTKCSKRSILSE 107
D++ K G + NP T F + D K I E
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 108 FN--IGGLTFHWFPEGIFGIALT----PPEADGFKNLLFHPIASHSEFAVSTRVLRNKTL 161
N TF +G+ ++ T P A L + + F L++K L
Sbjct: 1710 INEHSTSYTFR-SEKGL--LSATQFTQP--A------LT--LMEKAAF----EDLKSKGL 1752
Query: 162 AESAD-----S---YNAYVKIGD-------------RGEFNIGGLTFHWFPEGIFG---- 196
+ S Y A + D RG P G
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-----TMQVAVPRDELGRSNY 1807
Query: 197 --IALTPP------EADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNA----YV 244
IA+ P + + ++ + + + V V N YN YV
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVV-ERVGKRTGWLVEI-V--N---------YNVENQQYV 1854
Query: 245 KIGDRGRDGHLT-----SHVMDHNGI 265
G L ++V++ +
Sbjct: 1855 -AA-----GDLRALDTVTNVLNFIKL 1874
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 31.0 bits (71), Expect = 0.50
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
+ + R I + + D + I + V+ A ++ +
Sbjct: 232 FMKIVS-KRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRA 276
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 28.7 bits (65), Expect = 0.98
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 29 PEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKV 76
PE+ GTF+ IA D L++ + +P R+ S+ L+V
Sbjct: 10 PEEAKHGTFVGRIAQDL---GLELTELVPRLFRVASK---DRGDLLEV 51
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide
binding fold; 1.86A {Pectobacterium carotovorum} SCOP:
a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
V +L + I YQ P+D L + + N DIL +
Sbjct: 245 QVAELN-NGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARL 289
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Mus musculus}
Length = 125
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 29 PEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKV 76
E+ G+ + N+A D L + + I ++LS+ G+ L++
Sbjct: 18 LEETDRGSLVGNLAKDL---GLSLRELITRGAQILSK---GNKQLLQL 59
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative, PSI; 1.85A {Nostoc SP}
Length = 374
Score = 29.5 bits (67), Expect = 1.6
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
+ L D ++ P+++ + I + N +ILK++
Sbjct: 269 DLAVLS-DGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAV 313
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 29.1 bits (64), Expect = 2.7
Identities = 14/74 (18%), Positives = 24/74 (32%)
Query: 48 NNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSE 107
NN+ ILK + EE S + + N F C + + + + +
Sbjct: 168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHAT 227
Query: 108 FNIGGLTFHWFPEG 121
+W P G
Sbjct: 228 LETLLRFLNWIPLG 241
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 28.7 bits (63), Expect = 3.3
Identities = 16/76 (21%), Positives = 25/76 (32%)
Query: 48 NNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSE 107
NN+ +LK + EE S + L + E F C + + S I++
Sbjct: 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVAT 215
Query: 108 FNIGGLTFHWFPEGIF 123
HW P
Sbjct: 216 LESLLRYLHWIPYRYI 231
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 27.6 bits (62), Expect = 7.1
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 12 HVFDLKTDRRIRKYQFRPEDI-LPGTFIANIAVDFASNNLDILKSI 56
++ + + K F P + +A A N ++++
Sbjct: 259 TIWRVA-AGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAV 303
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 27.3 bits (61), Expect = 9.9
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 10 AIHVFDLKTDRRIRKYQFRPEDIL 33
A+ + D++ RI Y+F+ E +L
Sbjct: 457 AVMIQDMQGK-RINNYEFKWERML 479
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,516,213
Number of extensions: 333639
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 18
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)