RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11725
         (347 letters)



>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 27.5 bits (60), Expect = 3.0
 Identities = 5/43 (11%), Positives = 12/43 (27%)

Query: 86  DTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALT 128
           + F+  +        +      F+        + E +   A T
Sbjct: 376 NEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAAT 418


>d1pprm1 a.131.1.1 (M:1-156) Peridinin-chlorophyll protein
          {Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
          Length = 156

 Score = 26.1 bits (57), Expect = 4.2
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 63 LSEVEWGSDSYLKVLGIQWNPKE 85
            EV+W +  +L+  G +  P E
Sbjct: 18 AKEVDWNNGIFLQAPG-KLQPLE 39


>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 121

 Score = 25.4 bits (55), Expect = 6.3
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 9/41 (21%)

Query: 173 KIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFH 213
           KIG+ G   +    F W         + P    G   L+++
Sbjct: 68  KIGNSGTIPVNTGLFRW---------VAPNNVQGAITLIYN 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,364,386
Number of extensions: 63600
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)