RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11729
         (281 letters)



>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG,
           MPG) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score =  234 bits (597), Expect = 4e-78
 Identities = 99/259 (38%), Positives = 136/259 (52%), Gaps = 52/259 (20%)

Query: 18  LDQAFFDQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPR 77
           L   FFDQP + LA A LG+ LVRRL  GT L G+IVET++YLG ED A+HS   R+TPR
Sbjct: 5   LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPR 64

Query: 78  NEPMYMKPGTIYVYFTYGMYHCFNLSSQESGGAVLIRSLEPVHGLDIMNRLRNQFNENQN 137
           N  M+MKPGT+YVY  YGMY C N+SSQ  G  VL+R+LEP+ GL+ M +LR+   +   
Sbjct: 65  NRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTA 124

Query: 138 KSKRNNHLPNSQNNEETHSQSNRNSPAKKQKLIKSKQTLSSNDWDQPNKKSKLQDRDLCN 197
                                                                +DR+LC+
Sbjct: 125 SRVL-------------------------------------------------KDRELCS 135

Query: 198 GPSKLCISMDITIEYLNKRHICESEEMWVQDLDCE-SNITIVESSRIGIGDFAKEWKAKL 256
           GPSKLC ++ I     ++R + + E +W++    E S   +V ++R+G+   A EW  K 
Sbjct: 136 GPSKLCQALAINKS-FDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGV-GHAGEWARKP 193

Query: 257 LRFYILGNKCVSKTDKKME 275
           LRFY+ G+  VS  D+  E
Sbjct: 194 LRFYVRGSPWVSVVDRVAE 212


>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 74

 Score = 24.3 bits (53), Expect = 6.4
 Identities = 8/64 (12%), Positives = 20/64 (31%)

Query: 28 IDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYMKPGT 87
          +D     L   ++ +L       G +   + ++ +    +    +    R     +  G 
Sbjct: 8  LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGD 67

Query: 88 IYVY 91
            VY
Sbjct: 68 NIVY 71


>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
          {Archaeon Pyrococcus abyssi [TaxId: 29292]}
          Length = 71

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 24 DQPCIDLANALLGKYLVRRLSCGTLLIGKIVETESYLGVEDRASHSYNNRRTPRNEPMYM 83
          ++P +D+ +  L K ++  L  G    G+++  + +L V    +    +    +     +
Sbjct: 1  ERP-LDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIV 59

Query: 84 KPGTIYVY 91
            G   + 
Sbjct: 60 IRGDNVLA 67


>d1vava_ b.29.1.18 (A:) Alginate lyase PA1167 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 222

 Score = 25.3 bits (55), Expect = 9.4
 Identities = 9/30 (30%), Positives = 10/30 (33%)

Query: 91  YFTYGMYHCFNLSSQESGGAVLIRSLEPVH 120
           YF  G+Y   N      GG      L   H
Sbjct: 192 YFKAGLYLQDNRGPSSEGGRATFSELRVSH 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 986,187
Number of extensions: 43100
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)