BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1173
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 294 bits (752), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 167/360 (46%), Positives = 229/360 (63%), Gaps = 23/360 (6%)
Query: 37 GVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYTWGCN 96
G+VLT GQGD GQLGLG +VMERK A MHTVCL++ G+VY++GCN
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 97 DEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMG 155
DEGALGR+ + SE +P V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G +G
Sbjct: 76 DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG 135
Query: 156 LKGEGIQKT--PLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSAS 213
L E ++K+ P++++ +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ + A+
Sbjct: 136 LL-EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 194
Query: 214 RNARRGMS-FLEPGEVPLK----RKHI--DDVFTGVYNTF-ISSKGSILAFGLNNYSQLG 265
R R+G+ L P V LK R H+ D F G Y TF IS +G + FGL+NY QLG
Sbjct: 195 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLG 254
Query: 266 EADSEVQKSGNTCFFTPHLIKSL--SDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRL 323
+E +CF P + S S K + + GQHH++ ++SEGK Y+ GR +YGRL
Sbjct: 255 TPGTE------SCFI-PQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 307
Query: 324 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
GL +E + PT I L ++S+ACG V +A+ +G ++ WGMG YQLG G+++D
Sbjct: 308 GLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 365
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 191/414 (46%), Gaps = 68/414 (16%)
Query: 130 SHSVALLEDGTVYAWGSFRDSHGSMGLKGEGI--QKTPLKLESVSGIVKIASGADHFVML 187
SH E G V G + G +GL GE + +K P + +V+ +G H V L
Sbjct: 7 SHRSHSTEPGLVLTLG--QGDVGQLGL-GENVMERKKPALVSIPEDVVQAEAGGMHTVCL 63
Query: 188 TSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247
+ G + + GC ++G LGR T S + PG+V L+ K + + +
Sbjct: 64 SKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGKVELQEKVVQVSAGDSHTAAL 115
Query: 248 SSKGSILAFG--LNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLA 305
+ G + +G +N +G + ++KS P ++ D +ASG H +
Sbjct: 116 TDDGRVFLWGSFRDNNGVIGLLEP-MKKS-----MVP--VQVQLDVPVVKVASGNDHLVM 167
Query: 306 LNSEGKIYAFGRHDYGRLGL----------KNVSEPVTEPTPIP-----SLQDKTITSIA 350
L ++G +Y G + G+LG + E + P + S
Sbjct: 168 LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 227
Query: 351 CGNCVSFAIDSEGVLYGWGMGNGYQLGN---------------------------GKEDD 383
CG +FAI EG +YG+G+ N +QLG G+
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 287
Query: 384 I-LNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 442
+ ++SEGK Y+ GR +YGRLGL +E + PT I L ++S+ACG V +A+ +G
Sbjct: 288 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDG 345
Query: 443 VLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPK 496
++ WGMG YQLG G+++D P+++ GKQL N VL V+SGGQH+V+L K K
Sbjct: 346 RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 399
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 32 CKTGGGVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVY 91
C G + G+ + G+LGLG E+ +T+DG+V+
Sbjct: 289 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVF 348
Query: 92 TWGCNDEGALGREAEGDS----EFIPQTVNLPKKAVQISAGDSHSVALLED 138
WG LG + D+ E + + + + + +S+G H+V L++D
Sbjct: 349 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLE-NRVVLSVSSGGQHTVLLVKD 398
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/360 (46%), Positives = 229/360 (63%), Gaps = 23/360 (6%)
Query: 37 GVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYTWGCN 96
G+VLT GQGD GQLGLG +VMERK A MHTVCL++ G+VY++GCN
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 97 DEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMG 155
DEGALGR+ + SE +P V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G +G
Sbjct: 87 DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG 146
Query: 156 LKGEGIQKT--PLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSAS 213
L E ++K+ P++++ +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ + A+
Sbjct: 147 LL-EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 205
Query: 214 RNARRGMS-FLEPGEVPLK----RKHI--DDVFTGVYNTF-ISSKGSILAFGLNNYSQLG 265
R R+G+ L P V LK R H+ D F G Y TF IS +G + FGL+NY QLG
Sbjct: 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLG 265
Query: 266 EADSEVQKSGNTCFFTPHLIKSL--SDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRL 323
+E +CF P + S S K + + GQHH++ ++SEGK Y+ GR +YGRL
Sbjct: 266 TPGTE------SCFI-PQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 318
Query: 324 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
GL +E + PT I L ++S+ACG V +A+ +G ++ WGMG YQLG G+++D
Sbjct: 319 GLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 376
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 201/432 (46%), Gaps = 73/432 (16%)
Query: 113 PQTVNLPK-KAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGI--QKTPLKLE 169
P +PK K V++S SHS E G V G + G +GL GE + +K P +
Sbjct: 4 PPADAIPKSKKVKVSH-RSHST---EPGLVLTLG--QGDVGQLGL-GENVMERKKPALVS 56
Query: 170 SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP 229
+V+ +G H V L+ G + + GC ++G LGR T S + PG+V
Sbjct: 57 IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSE--------MVPGKVE 108
Query: 230 LKRKHIDDVFTGVYNTFISSKGSILAFG--LNNYSQLGEADSEVQKSGNTCFFTPHLIKS 287
L+ K + + ++ G + +G +N +G + ++KS P ++
Sbjct: 109 LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEP-MKKS-----MVP--VQV 160
Query: 288 LSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGL----------KNVSEPVTEPTP 337
D +ASG H + L ++G +Y G + G+LG + E + P
Sbjct: 161 QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKC 220
Query: 338 IP-----SLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGN-------------- 378
+ S CG +FAI EG +YG+G+ N +QLG
Sbjct: 221 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Query: 379 -------------GKEDDI-LNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKT 424
G+ + ++SEGK Y+ GR +YGRLGL +E + PT I L
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PA 338
Query: 425 ITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVAS 484
++S+ACG V +A+ +G ++ WGMG YQLG G+++D P+++ GKQL N VL V+S
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 398
Query: 485 GGQHSVILAKPK 496
GGQH+V+L K K
Sbjct: 399 GGQHTVLLVKDK 410
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 32 CKTGGGVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVY 91
C G + G+ + G+LGLG E+ +T+DG+V+
Sbjct: 300 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVF 359
Query: 92 TWGCNDEGALGREAEGDS----EFIPQTVNLPKKAVQISAGDSHSVALLED 138
WG LG + D+ E + + + + + +S+G H+V L++D
Sbjct: 360 AWGMGTNYQLGTGQDEDAWSPVEMMGKQLE-NRVVLSVSSGGQHTVLLVKD 409
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/360 (45%), Positives = 214/360 (59%), Gaps = 14/360 (3%)
Query: 31 KCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKV 90
K +T G VL CG GD GQLGLG D++ERK + MH + LT+ G +
Sbjct: 37 KRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 91 YTWGCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRD 149
Y++GCNDEGALGR+ D SE P ++LP KA+ ISAGDSHS LLEDG V+AWGSFRD
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRD 156
Query: 150 SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQ 209
SHG+MGL +G ++TP+ L + IASGADH V+LT+ G + T GC EQGQLGR+++
Sbjct: 157 SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE 216
Query: 210 RSASRNARRG-MSFLEPGEVPLKR-KHIDDVFTGVYNTFI--SSKGSILAFGLNNYSQLG 265
RS S RRG L P ++ + R K + ++ Y TF+ S I A GLNN+ QL
Sbjct: 217 RSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLA 276
Query: 266 EADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGL 325
+ G TP IK+ K +A GQHH++ L ++ K GR +YGRLGL
Sbjct: 277 H-----ETKGKEFALTP--IKT-ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL 328
Query: 326 KNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDIL 385
+V + V +PT + L +K I S+ CG S+A+ +G LY WG G QLG G DD L
Sbjct: 329 GDVKDVVEKPTIVKKLTEK-IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 177/384 (46%), Gaps = 61/384 (15%)
Query: 152 GSMGLKGEGIQKTPLKLESVSGI---VKIASGADHFVMLTSRGNLLTAGCPEQGQLGRIT 208
G +GL GE I + +L V+GI V I++G H ++LT G++ + GC ++G LGR T
Sbjct: 54 GQLGL-GEDILERK-RLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDT 111
Query: 209 QRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFG--LNNYSQLGE 266
S + +P + L K + ++ + G + A+G +++ +G
Sbjct: 112 SEDGSES--------KPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMG- 162
Query: 267 ADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGL- 325
+ GN TP I + +ASG H + L + GK++ G + G+LG
Sbjct: 163 ----LTIDGNK--RTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214
Query: 326 --KNVS-------EPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG-VLYGWGMGNGYQ 375
+++S + PT + + K +I N +F +S+ V++ G+ N Q
Sbjct: 215 SERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQ 274
Query: 376 LGN---GKE----------------------DDILNSEGKIYAFGRHDYGRLGLKNVSEP 410
L + GKE IL ++ K GR +YGRLGL +V +
Sbjct: 275 LAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDV 334
Query: 411 VTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIE 470
V +PT + L +K I S+ CG S+A+ +G LY WG G QLG G DD LEP+ +
Sbjct: 335 VEKPTIVKKLTEK-IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVV 393
Query: 471 GKQLNNYTVLQVASGGQHSVILAK 494
K +L + GGQH++ L K
Sbjct: 394 SKNTQGKHMLLASGGGQHAIFLVK 417
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 164/352 (46%), Gaps = 58/352 (16%)
Query: 79 MHTVCLTEDGKVYTWGCNDEGALGR--------------------------EAEGDSEFI 112
MHT+ L E+ V++WGCND GALGR E E I
Sbjct: 77 MHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKI 136
Query: 113 PQTVNLP----KKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGE--GIQKTPL 166
P+ P K VQ++A D+ S AL +G VYAWG+FR + G +G + IQKTP
Sbjct: 137 PRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 167 KLESVS--GIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLE 224
K+ + S IV++A G DH + L G + G +Q QLGR R + L+
Sbjct: 197 KVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME------RFRLKTLD 250
Query: 225 PGEVPLKRKHIDDVFTGVYNTFISSKGS-ILAFGLNNYSQLGEADSEVQKSGNTCFFTPH 283
P P +H+ + +G + F +K + ++++GLN + Q G SE + G P
Sbjct: 251 PR--PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGV--SEDVEDG-ALVTKPK 305
Query: 284 LIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEP---------VTE 334
+ + +A+G+HHSL L+ +G +Y+ GR D +G+ + P
Sbjct: 306 RLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKAR 365
Query: 335 PTPIPSLQDKT--ITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGK-EDD 383
P+P+ + S+A G+ S A+ G+ Y WG G Y +G G EDD
Sbjct: 366 AVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 168/427 (39%), Gaps = 89/427 (20%)
Query: 141 VYAWGSFRDSHGSMGL----KGEGIQK---TPLKLESVSGIVKIASGADHFVMLTSRGNL 193
++ WG+ S +GL K + +++ P + I+ A G H + L N+
Sbjct: 31 IFCWGT--GSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 194 LTAGCPEQGQLGRITQRSASR-----------NARRGMSFLE--PGEVPLK--------R 232
+ GC + G LGR T + + + ++ LE P ++P +
Sbjct: 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148
Query: 233 KHIDDVFTGVYNTFISSKGSILAFGLNNYSQ--LG--EADSEVQKSGNTCFFTPHLIKSL 288
K + T + + S G + A+G ++ LG + ++QK TP + +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQK-------TPWKVPTF 201
Query: 289 SDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSE---PVTEPTPIPSLQDKT 345
S LA G+ H L L+ EG ++A+G +LG K + +P P +
Sbjct: 202 SKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RH 258
Query: 346 ITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD---------------------- 383
+ IA G FA+ + L WG+ Q G ++ +
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318
Query: 384 --------ILNSEGKIYAFGRHDYGRLGLKNVSEP---------VTEPTPIPSLQDKT-- 424
IL+ +G +Y+ GR D +G+ + P P+P+ +
Sbjct: 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378
Query: 425 ITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGK-EDDILEPMKIEGKQLNNYTVLQVA 483
S+A G+ S A+ G+ Y WG G Y +G G EDD P +I+ ++ ++ V
Sbjct: 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVG 438
Query: 484 SGGQHSV 490
GGQ SV
Sbjct: 439 CGGQFSV 445
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 62/274 (22%)
Query: 253 ILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKI 312
I +G + +LG K P L + + K A G H+LAL+ E +
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRD--EAKIISFAVGGMHTLALDEESNV 88
Query: 313 YAFGRHDYGRLGLKN----------------------VSEPVTEPTPIPS------LQDK 344
+++G +D G LG ++E + P IP +
Sbjct: 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148
Query: 345 TITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGL 404
+ +A + +S A+ S G +Y WG R + G LG
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTF------------------------RCNEGILGF 184
Query: 405 KNVSEPVTE-PTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDI 463
+ + P +P+ I +A G +D EG+++ WG G QLG +
Sbjct: 185 YQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR----KV 240
Query: 464 LEPMK---IEGKQLNNYTVLQVASGGQHSVILAK 494
+E + ++ + V +ASG H L K
Sbjct: 241 MERFRLKTLDPRPFGLRHVKYIASGENHCFALTK 274
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 47/385 (12%)
Query: 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMER--KTFAXXXXXXXXXX 73
P +KV + S G +V + G+G+ GQLG G D +R T
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVS 60
Query: 74 XXXXXMHTVCLTEDG-KVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAV------QIS 126
HTV ++ G +VY+WG D G LG D F P LP KA+ QI+
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL-FTP----LPIKALHGIRIKQIA 115
Query: 127 AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGI-VK-IASGADHF 184
GDSH +A+ +G V +WG R+ +G +GL P K+++ GI +K +A+GA+H
Sbjct: 116 CGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 185 VMLTSRGNLLTAGCPEQGQLG------RITQRSASRNARRGMSFLEPGEVPLKRKHIDDV 238
+T G+L G G LG R+ + MS + G
Sbjct: 174 AAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW----------- 222
Query: 239 FTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLAS 298
+ +S G++ +G + Y QLG D E PH +++LS+ + ++
Sbjct: 223 ---RHTISVSYSGALYTYGWSKYGQLGHGDLEDH-------LIPHKLEALSNSFISQISG 272
Query: 299 GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 358
G H++AL S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A
Sbjct: 273 GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLA 331
Query: 359 IDSEGVLYGWGMGNGYQLGNGKEDD 383
+ ++ WG G QLG G+ D
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVD 356
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 177/390 (45%), Gaps = 59/390 (15%)
Query: 119 PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVK 176
P+K + ISAG SHSVALL V +WG R G +G + +P +L ++ G IV
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWG--RGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60
Query: 177 IASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH-- 234
+ GADH V + G + G GR+ ++S P +P+K H
Sbjct: 61 VTCGADHTVAYSQSG--MEVYSWGWGDFGRLGHGNSS-------DLFTP--LPIKALHGI 109
Query: 235 -IDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKK 292
I + G + ++ +G + ++G N QLG D+E P I++ +
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS-------LVPQKIQAFEGIR 162
Query: 293 FTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG 352
M+A+G H+ A+ +G +Y +G YG LGL + ++ + P + S + ++ +ACG
Sbjct: 163 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVACG 221
Query: 353 NCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD--------------------------ILN 386
+ ++ G LY +G QLG+G +D L
Sbjct: 222 WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT 281
Query: 387 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYG 446
S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A+ ++
Sbjct: 282 SDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 340
Query: 447 WGMGNGYQLGNGKEDD-----ILEPMKIEG 471
WG G QLG G+ D I+E + ++G
Sbjct: 341 WGRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Query: 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA 350
+K ++++G HS+AL S + ++GR + G+LG + +E PT + +L I S+
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVT 62
Query: 351 CGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEP 410
CG + A G+ ++Y++G D+GRLG N S+
Sbjct: 63 CGADHTVAYSQSGM-------------------------EVYSWGWGDFGRLGHGNSSDL 97
Query: 411 VTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIE 470
T P PI +L I IACG+ A+ EG + WG QLG G +D L P KI+
Sbjct: 98 FT-PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 156
Query: 471 GKQLNNYTVLQVASGGQHSVILAK 494
+ VA+G +H+ + +
Sbjct: 157 A--FEGIRIKMVAAGAEHTAAVTE 178
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLE 137
HT+ LT DGK+Y WG N G +G D + P V P +K VQ+S G H++A+ E
Sbjct: 276 HTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 334
Query: 138 DGTVYAWGSFRDSHGSMGLKGEGIQKT-PLKLESVS 172
V+AWG R ++G +G+ GE + + P +E++S
Sbjct: 335 RNNVFAWG--RGTNGQLGI-GESVDRNFPKIIEALS 367
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 47/385 (12%)
Query: 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMER--KTFAXXXXXXXXXX 73
P +KV + S G +V + G+G+ GQLG G D +R T
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVS 72
Query: 74 XXXXXMHTVCLTEDG-KVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAV------QIS 126
HTV ++ G +VY+WG D G LG D F P LP KA+ QI+
Sbjct: 73 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL-FTP----LPIKALHGIRIKQIA 127
Query: 127 AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGI-VK-IASGADHF 184
GDSH +A+ +G V +WG R+ +G +GL P K+++ GI +K +A+GA+H
Sbjct: 128 CGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 185
Query: 185 VMLTSRGNLLTAGCPEQGQLG------RITQRSASRNARRGMSFLEPGEVPLKRKHIDDV 238
+T G+L G G LG R+ + MS + G
Sbjct: 186 AAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW----------- 234
Query: 239 FTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLAS 298
+ +S G++ +G + Y QLG D E PH +++LS+ + ++
Sbjct: 235 ---RHTISVSYSGALYTYGWSKYGQLGHGDLEDH-------LIPHKLEALSNSFISQISG 284
Query: 299 GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 358
G H++AL S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A
Sbjct: 285 GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLA 343
Query: 359 IDSEGVLYGWGMGNGYQLGNGKEDD 383
+ ++ WG G QLG G+ D
Sbjct: 344 VTERNNVFAWGRGTNGQLGIGESVD 368
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 179/391 (45%), Gaps = 61/391 (15%)
Query: 119 PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVK 176
P+K + ISAG SHSVALL V +WG R G +G + +P +L ++ G IV
Sbjct: 15 PRKVLIISAGASHSVALLSGDIVCSWG--RGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 72
Query: 177 IASGADHFVMLTSRG-NLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH- 234
+ GADH V + G + + G G GR+ ++S P +P+K H
Sbjct: 73 VTCGADHTVAYSQSGMEVYSWGW---GDFGRLGHGNSS-------DLFTP--LPIKALHG 120
Query: 235 --IDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDK 291
I + G + ++ +G + ++G N QLG D+E P I++
Sbjct: 121 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS-------LVPQKIQAFEGI 173
Query: 292 KFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIAC 351
+ M+A+G H+ A+ +G +Y +G YG LGL + ++ + P + S + ++ +AC
Sbjct: 174 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVAC 232
Query: 352 GNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD--------------------------IL 385
G + ++ G LY +G QLG+G +D L
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMAL 292
Query: 386 NSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLY 445
S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A+ ++
Sbjct: 293 TSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351
Query: 446 GWGMGNGYQLGNGKEDD-----ILEPMKIEG 471
WG G QLG G+ D I+E + ++G
Sbjct: 352 AWGRGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Query: 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA 350
+K ++++G HS+AL S + ++GR + G+LG + +E PT + +L I S+
Sbjct: 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVT 74
Query: 351 CGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEP 410
CG + A G+ ++Y++G D+GRLG N S+
Sbjct: 75 CGADHTVAYSQSGM-------------------------EVYSWGWGDFGRLGHGNSSDL 109
Query: 411 VTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIE 470
T P PI +L I IACG+ A+ EG + WG QLG G +D L P KI+
Sbjct: 110 FT-PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168
Query: 471 GKQLNNYTVLQVASGGQHSVILAK 494
+ VA+G +H+ + +
Sbjct: 169 A--FEGIRIKMVAAGAEHTAAVTE 190
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLE 137
HT+ LT DGK+Y WG N G +G D + P V P +K VQ+S G H++A+ E
Sbjct: 288 HTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 346
Query: 138 DGTVYAWGSFRDSHGSMGLKGEGIQKT-PLKLESVS 172
V+AWG R ++G +G+ GE + + P +E++S
Sbjct: 347 RNNVFAWG--RGTNGQLGI-GESVDRNFPKIIEALS 379
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 118/274 (43%), Gaps = 35/274 (12%)
Query: 37 GVVLTCGQGDTGQLGLGP---DVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYTW 93
G V + G+ GQLGLG ++ +K A HT +TEDG +Y W
Sbjct: 140 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE--HTAAVTEDGDLYGW 197
Query: 94 GCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLEDGTVYAWGSFRDSH 151
G G LG D +P+ V +K ++ G H++++ G +Y +G + +
Sbjct: 198 GWGRYGNLGLGDRTD-RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK--Y 254
Query: 152 GSMGLKGEGIQKTPLKLESVSG--IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQ 209
G +G P KLE++S I +I+ G H + LTS G L G + GQ+G
Sbjct: 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG---- 310
Query: 210 RSASRNARRGMSFLEPGEVPL-KRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEA 267
+ P +V + + V G +T ++ + ++ A+G QLG
Sbjct: 311 ------VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG-- 362
Query: 268 DSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQH 301
+ +S + F P +I++LS ASGQH
Sbjct: 363 ---IGESVDRNF--PKIIEALSVDG----ASGQH 387
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 175/385 (45%), Gaps = 47/385 (12%)
Query: 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMER--KTFAXXXXXXXXXX 73
P +KV + S G +V + G+G+ GQLG G D +R T
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVS 60
Query: 74 XXXXXMHTVCLTEDG-KVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAV------QIS 126
HTV ++ G +VY+WG D G LG D F P LP KA+ QI+
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL-FTP----LPIKALHGIRIKQIA 115
Query: 127 AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGI-VK-IASGADHF 184
GDSH +A+ +G V +WG R+ +G +GL P K+++ GI +K +A+GA+H
Sbjct: 116 CGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 185 VMLTSRGNLLTAGCPEQGQLG------RITQRSASRNARRGMSFLEPGEVPLKRKHIDDV 238
+T G+L G G LG R+ + MS + G
Sbjct: 174 AAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW----------- 222
Query: 239 FTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLAS 298
+ +S G++ +G + Y QLG D E PH +++LS+ + ++
Sbjct: 223 ---RHTISVSYSGALYTYGWSKYGQLGHGDLEDH-------LIPHKLEALSNSFISQISG 272
Query: 299 GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 358
G H++AL S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A
Sbjct: 273 GFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLA 331
Query: 359 IDSEGVLYGWGMGNGYQLGNGKEDD 383
+ ++ WG G QLG G+ D
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVD 356
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 177/390 (45%), Gaps = 59/390 (15%)
Query: 119 PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVK 176
P+K + ISAG SHSVALL V +WG R G +G + +P +L ++ G IV
Sbjct: 3 PRKVLIISAGASHSVALLSGDIVCSWG--RGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60
Query: 177 IASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH-- 234
+ GADH V + G + G GR+ ++S P +P+K H
Sbjct: 61 VTCGADHTVAYSQSG--MEVYSWGWGDFGRLGHGNSS-------DLFTP--LPIKALHGI 109
Query: 235 -IDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKK 292
I + G + ++ +G + ++G N QLG D+E P I++ +
Sbjct: 110 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS-------LVPQKIQAFEGIR 162
Query: 293 FTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG 352
M+A+G H+ A+ +G +Y +G YG LGL + ++ + P + S + ++ +ACG
Sbjct: 163 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV-PERVTSTGGEKMSMVACG 221
Query: 353 NCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD--------------------------ILN 386
+ ++ G LY +G QLG+G +D L
Sbjct: 222 WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALT 281
Query: 387 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYG 446
S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A+ ++
Sbjct: 282 SDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 340
Query: 447 WGMGNGYQLGNGKEDD-----ILEPMKIEG 471
WG G QLG G+ D I+E + ++G
Sbjct: 341 WGRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Query: 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA 350
+K ++++G HS+AL S + ++GR + G+LG + +E PT + +L I S+
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVT 62
Query: 351 CGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEP 410
CG + A G+ ++Y++G D+GRLG N S+
Sbjct: 63 CGADHTVAYSQSGM-------------------------EVYSWGWGDFGRLGHGNSSDL 97
Query: 411 VTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIE 470
T P PI +L I IACG+ A+ EG + WG QLG G +D L P KI+
Sbjct: 98 FT-PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 156
Query: 471 GKQLNNYTVLQVASGGQHSVILAK 494
+ VA+G +H+ + +
Sbjct: 157 A--FEGIRIKMVAAGAEHTAAVTE 178
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLE 137
HT+ LT DGK+Y WG N G +G D + P V P +K VQ+S G H++A+ E
Sbjct: 276 HTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 334
Query: 138 DGTVYAWGSFRDSHGSMGLKGEGIQKT-PLKLESVS 172
V+AWG R ++G +G+ GE + + P +E++S
Sbjct: 335 RNNVFAWG--RGTNGQLGI-GESVDRNFPKIIEALS 367
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 183/421 (43%), Gaps = 62/421 (14%)
Query: 88 GKVYTWGCNDEGALGREAEGDSEFIPQTVNLPK--KAVQISAGDSHSVALLEDGTVYAWG 145
G +Y WG N G LG EG +P + VQ+ G+ A+ DG +YA G
Sbjct: 20 GTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATG 78
Query: 146 SFRDSHGSMGLKGEGIQKTPLKLESVSGI----VKIASGADHFVMLTSRGNLLTAGCPEQ 201
+ E + TP LES+ + V + SG H + L+S G + + G E
Sbjct: 79 -YGAGGRLGIGGTESVS-TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED 136
Query: 202 GQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNY 261
G+LG + R R + L EV +D G ++ +++ G + +G Y
Sbjct: 137 GKLGHGNRSPCDRP--RVIESLRGIEV------VDVAAGGAHSACVTAAGDLYTWGKGRY 188
Query: 262 SQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLA--SGQHHSLALNSEGKIYAFGRHD 319
+LG +DSE Q P L+++L + +A SG +L L + ++++G D
Sbjct: 189 GRLGHSDSEDQ-------LKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 320 YGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNG 379
YG+LG + S+ P I SL + + CG+ S A+ G +Y WG G+ ++LG+G
Sbjct: 242 YGKLG-RGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHG 300
Query: 380 KEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAID 439
+D V P + LQ K + +IA G+
Sbjct: 301 SDDH---------------------------VRRPRQVQGLQGKKVIAIATGSLHCVCCT 333
Query: 440 SEGVLYGWGMGNGYQLGNGKEDDILEP---MKIEGKQLNNYTVLQVASGGQHSVILAKPK 496
+G +Y WG + QLG+G + I P ++GK++N +VA G H++ + K
Sbjct: 334 EDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN-----RVACGSAHTLAWSTSK 388
Query: 497 P 497
P
Sbjct: 389 P 389
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 47/296 (15%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPK--KAVQISAGDSHSVALLE 137
H + L+ +G+VY+WG ++G LG + P+ + + + V ++AG +HS +
Sbjct: 118 HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR-PRVIESLRGIEVVDVAAGGAHSACVTA 176
Query: 138 DGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVKIA--SGADHFVMLTSRGNL 193
G +Y WG R +G +G Q P +E++ G +V IA SG + LT +
Sbjct: 177 AGDLYTWGKGR--YGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
Query: 194 LTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGV----------Y 243
+ G + G+LG RG S + +VP+K D TG+ +
Sbjct: 235 WSWGDGDYGKLG------------RGGS--DGCKVPMKI----DSLTGLGVVKVECGSQF 276
Query: 244 NTFISSKGSILAFGLNNYSQLGE-ADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHH 302
+ ++ G++ +G +Y +LG +D V++ P ++ L KK +A+G H
Sbjct: 277 SVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--------PRQVQGLQGKKVIAIATGSLH 328
Query: 303 SLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 358
+ +G++Y +G +D G+LG + + P + +LQ K + +ACG+ + A
Sbjct: 329 CVCCTEDGEVYTWGDNDEGQLG-DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 35/284 (12%)
Query: 37 GVVLTCGQGDTGQLGLG-PDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYTWGC 95
G V + G+ + G+LG G +R H+ C+T G +YTWG
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWG- 184
Query: 96 NDEGALGREAEGDSE--FIPQTVNLPK--KAVQIS--AGDSHSVALLEDGTVYAWGSFRD 149
+G GR DSE P+ V + + V I+ +GD+ ++ L +D TV++WG
Sbjct: 185 --KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD--G 240
Query: 150 SHGSMGLKGEGIQKTPLKLESVS--GIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRI 207
+G +G G K P+K++S++ G+VK+ G+ V LT G + T G + +LG
Sbjct: 241 DYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG-- 298
Query: 208 TQRSASRNARRGMSFLEPGEVP-LKRKHIDDVFTG-VYNTFISSKGSILAFGLNNYSQLG 265
+ + RR P +V L+ K + + TG ++ + G + +G N+ QLG
Sbjct: 299 --HGSDDHVRR------PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350
Query: 266 EADSE-VQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNS 308
+ + +Q+ P L+ +L KK +A G H+LA ++
Sbjct: 351 DGTTNAIQR--------PRLVAALQGKKVNRVACGSAHTLAWST 386
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 33/253 (13%)
Query: 240 TGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASG 299
+G N + G+I +G N+ QLG + K P ++L+ + L G
Sbjct: 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVK-------VPTPCEALATLRPVQLIGG 61
Query: 300 QHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAI 359
+ A+ ++GK+YA G + G +E V+ PT + S+Q I +A +
Sbjct: 62 EQTLFAVTADGKLYATG-YGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS------ 114
Query: 360 DSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPS 419
GK L+SEG++Y++G + G+LG N S P P I S
Sbjct: 115 ------------------GGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIES 155
Query: 420 LQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTV 479
L+ + +A G S + + G LY WG G +LG+ +D L+P +E Q +
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215
Query: 480 LQVASGGQHSVIL 492
+ SG ++ L
Sbjct: 216 IACGSGDAQTLCL 228
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 32 CKTGGGVVLTCGQGDTGQLG-------LGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCL 84
C T G + T G+G G+LG L P ++E A T+CL
Sbjct: 173 CVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE----ALQGHRVVDIACGSGDAQTLCL 228
Query: 85 TEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDSHSVALLEDGTVY 142
T+D V++WG D G LGR D +P ++ V++ G SVAL + G VY
Sbjct: 229 TDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVY 287
Query: 143 AWGS---FRDSHGSMGLKGEGIQKTPLKLESVSG--IVKIASGADHFVMLTSRGNLLTAG 197
WG R HGS + + P +++ + G ++ IA+G+ H V T G + T G
Sbjct: 288 TWGKGDYHRLGHGS-----DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Query: 198 CPEQGQLGRITQRSASR 214
++GQLG T + R
Sbjct: 343 DNDEGQLGDGTTNAIQR 359
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPD-VMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYT 92
T G V T G+GD +LG G D + R +H VC TEDG+VYT
Sbjct: 281 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340
Query: 93 WGCNDEGALGREAEGDSEFI--PQTVNL--PKKAVQISAGDSHSVA 134
WG NDEG LG +G + I P+ V KK +++ G +H++A
Sbjct: 341 WGDNDEGQLG---DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 378 NGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 437
+G+E+ G IY +G + G+LG ++ V PTP +L + G FA
Sbjct: 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIGGEQTLFA 67
Query: 438 IDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILA 493
+ ++G LY G G G +LG G + + P +E Q + V SGG+H + L+
Sbjct: 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS 123
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 174/381 (45%), Gaps = 39/381 (10%)
Query: 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMER--KTFAXXXXXXXXXX 73
P +KV + S G +V + G+G+ GQLG G D +R T
Sbjct: 4 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVS 62
Query: 74 XXXXXMHTVCLTEDG-KVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAV------QIS 126
HTV ++ G +VY+WG D G LG D F P LP KA+ QI+
Sbjct: 63 VTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDL-FTP----LPIKALHGIRIKQIA 117
Query: 127 AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIV--KIASGADHF 184
GDSH +A+ +G V +WG R+ +G +GL P K+++ GI +A+GA+H
Sbjct: 118 CGDSHCLAVTXEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHT 175
Query: 185 VMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEV-PLKRKHIDDVFTGVY 243
+T G+L G G LG R R L P V + V G
Sbjct: 176 AAVTEDGDLYGWGWGRYGNLGL-----GDRTDR-----LVPERVTSTGGEKXSXVACGWR 225
Query: 244 NTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHH 302
+T +S G++ +G + Y QLG D E PH +++LS+ + ++ G H
Sbjct: 226 HTISVSYSGALYTYGWSKYGQLGHGDLEDH-------LIPHKLEALSNSFISQISGGARH 278
Query: 303 SLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSE 362
+ AL S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A+
Sbjct: 279 TXALTSDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLAVTER 337
Query: 363 GVLYGWGMGNGYQLGNGKEDD 383
++ WG G QLG G+ D
Sbjct: 338 NNVFAWGRGTNGQLGIGESVD 358
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 59/390 (15%)
Query: 119 PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVK 176
P+K + ISAG SHSVALL V +WG R G +G + +P +L ++ G IV
Sbjct: 5 PRKVLIISAGASHSVALLSGDIVCSWG--RGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 62
Query: 177 IASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH-- 234
+ GADH V + G + + G GR+ ++S P +P+K H
Sbjct: 63 VTCGADHTVAYSQSGXEVYS--WGWGDFGRLGHGNSS-------DLFTP--LPIKALHGI 111
Query: 235 -IDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKK 292
I + G + ++ +G + ++G N QLG D+E P I++ +
Sbjct: 112 RIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDS-------LVPQKIQAFEGIR 164
Query: 293 FTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG 352
+A+G H+ A+ +G +Y +G YG LGL + ++ + P + S + + +ACG
Sbjct: 165 IKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV-PERVTSTGGEKXSXVACG 223
Query: 353 NCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD--------------------------ILN 386
+ ++ G LY +G QLG+G +D L
Sbjct: 224 WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALT 283
Query: 387 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYG 446
S+GK+Y +G + +G++G+ N + + P + D+ + ++CG + A+ ++
Sbjct: 284 SDGKLYGWGWNKFGQVGVGNNLDQCS-PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 342
Query: 447 WGMGNGYQLGNGKEDD-----ILEPMKIEG 471
WG G QLG G+ D I+E + ++G
Sbjct: 343 WGRGTNGQLGIGESVDRNFPKIIEALSVDG 372
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA 350
+K ++++G HS+AL S + ++GR + G+LG + +E PT + +L I S+
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVT 64
Query: 351 CGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEP 410
CG + A G ++Y++G D+GRLG N S+
Sbjct: 65 CGADHTVAYSQSGX-------------------------EVYSWGWGDFGRLGHGNSSDL 99
Query: 411 VTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIE 470
T P PI +L I IACG+ A+ EG + WG QLG G +D L P KI+
Sbjct: 100 FT-PLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 158
Query: 471 GKQLNNYTVLQVASGGQHSVILAK 494
+ VA+G +H+ + +
Sbjct: 159 A--FEGIRIKXVAAGAEHTAAVTE 180
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLE 137
HT LT DGK+Y WG N G +G D + P V P +K VQ+S G H++A+ E
Sbjct: 278 HTXALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 336
Query: 138 DGTVYAWGSFRDSHGSMGLKGEGIQKT-PLKLESVS 172
V+AWG R ++G +G+ GE + + P +E++S
Sbjct: 337 RNNVFAWG--RGTNGQLGI-GESVDRNFPKIIEALS 369
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 64/256 (25%)
Query: 79 MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLED 138
H + L + GKV WG N G L +P A I+AG+ HS+AL +D
Sbjct: 36 FHGLAL-KGGKVLGWGANLNGQL---------TMPAATQSGVDA--IAAGNYHSLAL-KD 82
Query: 139 GTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGC 198
G V AWG D +T + E+ SG+ IA+GA L G ++ G
Sbjct: 83 GEVIAWGGNEDG------------QTTVPAEARSGVDAIAAGAWASYAL-KDGKVIAWGD 129
Query: 199 PEQGQL--------------GRITQRSASRNA---RRGMSFLEPGEVPLKRKH-IDDVFT 240
GQ G + A +N G ++ VP + + +DDV
Sbjct: 130 DSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAG 189
Query: 241 GVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ 300
G++++ G ++A+G N Y Q T T L + +ASG+
Sbjct: 190 GIFHSLALKDGKVIAWGDNRYKQ-------------TTVPTEAL------SGVSAIASGE 230
Query: 301 HHSLALNSEGKIYAFG 316
+SLAL + GK+ A+G
Sbjct: 231 WYSLALKN-GKVIAWG 245
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 64/256 (25%)
Query: 79 MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLED 138
H + L + GKV WG N G L +P A I+AG+ HS+AL +D
Sbjct: 34 FHGLAL-KGGKVLGWGANLNGQL---------TMPAATQSGVDA--IAAGNYHSLAL-KD 80
Query: 139 GTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGC 198
G V AWG D +T + E+ SG+ IA+GA L G ++ G
Sbjct: 81 GEVIAWGGNEDG------------QTTVPAEARSGVDAIAAGAWASYAL-KDGKVIAWGD 127
Query: 199 PEQGQL--------------GRITQRSASRNA---RRGMSFLEPGEVPLKRKH-IDDVFT 240
GQ G + A +N G ++ VP + + +DDV
Sbjct: 128 DSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAG 187
Query: 241 GVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ 300
G++++ G ++A+G N Y Q T T L + +ASG+
Sbjct: 188 GIFHSLALKDGKVIAWGDNRYKQ-------------TTVPTEAL------SGVSAIASGE 228
Query: 301 HHSLALNSEGKIYAFG 316
+SLAL + GK+ A+G
Sbjct: 229 WYSLALKN-GKVIAWG 243
>pdb|1GGT|A Chain A, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1GGT|B Chain B, Three-Dimensional Structure Of A Transglutaminase: Human
Blood Coagulation Factor Xiii
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 142 YAWGSFRD----------SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRG 191
+++G F D M L G G P+K+ V G + + D V++ S
Sbjct: 225 WSYGQFEDGILDTCLYVMDRAQMDLSGRG---NPIKVSRV-GSAMVNAKDDEGVLVGSWD 280
Query: 192 NLLTAGCPEQGQLGRI----TQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247
N+ G P G + RS+ R G + VF GV+NTF+
Sbjct: 281 NIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCW---------------VFAGVFNTFL 325
Query: 248 SSKGSILAFGLNNYSQLGEADSEVQ 272
G I A + NY + D+ +Q
Sbjct: 326 RCLG-IPARIVTNYFSAHDNDANLQ 349
>pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 142 YAWGSFRD----------SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRG 191
+++G F D M L G G P+K+ V G + + D V++ S
Sbjct: 225 WSYGQFEDGILDTCLYVMDRAQMDLSGRG---NPIKVSRV-GSAMVNAKDDEGVLVGSWD 280
Query: 192 NLLTAGCPEQGQLGRI----TQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247
N+ G P G + RS+ R G + VF GV+NTF+
Sbjct: 281 NIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCW---------------VFAGVFNTFL 325
Query: 248 SSKGSILAFGLNNYSQLGEADSEVQ 272
G I A + NY + D+ +Q
Sbjct: 326 RCLG-IPARIVTNYFSAHDNDANLQ 349
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 142 YAWGSFRD----------SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRG 191
+++G F D M L G G P+K+ V G + + D V++ S
Sbjct: 225 WSYGQFEDGILDTCLYVMDRAQMDLSGRG---NPIKVSRV-GSAMVNAKDDEGVLVGSWD 280
Query: 192 NLLTAGCPEQGQLGRI----TQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247
N+ G P G + RS+ R G + VF GV+NTF+
Sbjct: 281 NIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCW---------------VFAGVFNTFL 325
Query: 248 SSKGSILAFGLNNYSQLGEADSEVQ 272
G I A + NY + D+ +Q
Sbjct: 326 RCLG-IPARIVTNYFSAHDNDANLQ 349
>pdb|1EX0|A Chain A, Human Factor Xiii, Mutant W279f Zymogen
pdb|1EX0|B Chain B, Human Factor Xiii, Mutant W279f Zymogen
Length = 731
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 34/145 (23%)
Query: 142 YAWGSFRD----------SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRG 191
+++G F D M L G G P+K+ V G + + D V++ S
Sbjct: 225 WSYGQFEDGILDTCLYVMDRAQMDLSGRG---NPIKVSRV-GSAMVNAKDDEGVLVGSFD 280
Query: 192 NLLTAGCPEQGQLGRI----TQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247
N+ G P G + RS+ R G + VF GV+NTF+
Sbjct: 281 NIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCW---------------VFAGVFNTFL 325
Query: 248 SSKGSILAFGLNNYSQLGEADSEVQ 272
G I A + NY + D+ +Q
Sbjct: 326 RCLG-IPARIVTNYFSAHDNDANLQ 349
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 311 KIYAFGRHDYGRLG--LKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGW 368
K YA R D ++G K ++ V I ++++K F ++YG
Sbjct: 231 KFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKV--------AAPFKEVELALVYGK 282
Query: 369 GMGNGYQL-GNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITS 427
G L G + DI+ G Y++G G+ K ++ P ++D+ + +
Sbjct: 283 GFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEIRDRVMAA 342
Query: 428 IACGN 432
I GN
Sbjct: 343 IRAGN 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,523,260
Number of Sequences: 62578
Number of extensions: 679415
Number of successful extensions: 1618
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 60
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)