Query psy1173
Match_columns 498
No_of_seqs 202 out of 2311
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:25:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 5.2E-54 1.1E-58 398.9 30.5 377 24-494 55-464 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.9E-44 8.5E-49 333.1 26.1 326 77-496 57-411 (476)
3 KOG1427|consensus 100.0 3.7E-40 7.9E-45 286.7 19.9 362 87-496 19-400 (443)
4 KOG1427|consensus 100.0 3.7E-39 8E-44 280.4 16.3 320 16-362 56-399 (443)
5 KOG0783|consensus 100.0 3.3E-28 7.1E-33 237.7 16.6 338 31-406 136-490 (1267)
6 KOG1428|consensus 99.9 1.7E-24 3.7E-29 219.9 21.9 307 118-492 477-892 (3738)
7 KOG0783|consensus 99.9 7.7E-24 1.7E-28 207.4 15.3 311 71-442 126-450 (1267)
8 KOG1428|consensus 99.9 9.4E-22 2E-26 200.3 24.4 333 23-380 484-855 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 5.9E-13 1.3E-17 89.8 6.0 50 441-492 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 3.2E-11 6.8E-16 81.3 5.4 49 36-84 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 2.3E-11 5.1E-16 70.7 4.0 30 425-454 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.4E-10 3.1E-15 67.4 4.3 30 71-100 1-30 (30)
13 KOG0941|consensus 99.1 1.1E-12 2.4E-17 131.2 -8.0 186 281-497 4-198 (850)
14 KOG0941|consensus 98.8 9.9E-11 2.1E-15 117.5 -7.9 132 335-495 5-143 (850)
15 PF11725 AvrE: Pathogenicity f 97.5 0.009 2E-07 66.1 19.0 290 120-496 489-815 (1774)
16 KOG3669|consensus 97.1 0.34 7.4E-06 48.1 23.4 105 29-145 194-300 (705)
17 PF11725 AvrE: Pathogenicity f 95.1 0.25 5.3E-06 55.4 11.9 248 71-363 560-815 (1774)
18 KOG0315|consensus 92.5 4.2 9E-05 36.5 12.5 143 82-259 46-197 (311)
19 KOG3669|consensus 90.1 4.5 9.7E-05 40.7 11.4 150 298-495 190-346 (705)
20 KOG0646|consensus 88.5 27 0.00058 34.4 16.2 68 118-197 80-151 (476)
21 KOG0315|consensus 85.0 29 0.00063 31.3 18.0 90 86-198 103-196 (311)
22 KOG0943|consensus 84.6 0.089 1.9E-06 56.4 -3.7 133 69-205 374-511 (3015)
23 KOG0943|consensus 84.4 0.14 3.1E-06 54.9 -2.3 136 170-321 372-508 (3015)
24 PF07569 Hira: TUP1-like enhan 80.4 7 0.00015 35.1 7.2 77 291-371 13-95 (219)
25 PF07569 Hira: TUP1-like enhan 79.9 9.5 0.0002 34.3 7.8 30 343-372 12-41 (219)
26 cd00200 WD40 WD40 domain, foun 78.5 50 0.0011 29.7 28.9 106 69-199 10-123 (289)
27 COG4257 Vgb Streptogramin lyas 78.0 38 0.00082 31.2 10.7 142 24-196 60-205 (353)
28 KOG1900|consensus 75.5 1.5E+02 0.0033 33.7 16.6 221 82-317 93-339 (1311)
29 smart00706 TECPR Beta propelle 74.2 7.9 0.00017 22.9 3.9 26 119-144 7-33 (35)
30 KOG0291|consensus 74.0 1.3E+02 0.0027 32.0 32.0 156 64-259 51-219 (893)
31 KOG2106|consensus 71.5 1.2E+02 0.0025 30.6 22.4 56 120-195 247-303 (626)
32 KOG0291|consensus 70.2 1.5E+02 0.0033 31.4 29.0 159 233-457 395-557 (893)
33 smart00706 TECPR Beta propelle 68.9 13 0.00029 21.9 4.1 24 424-447 9-33 (35)
34 KOG4441|consensus 67.8 72 0.0016 33.4 11.8 22 349-370 509-530 (571)
35 PHA02713 hypothetical protein; 67.4 57 0.0012 34.1 11.0 21 76-96 340-360 (557)
36 COG4257 Vgb Streptogramin lyas 66.8 1.1E+02 0.0024 28.4 13.7 103 25-146 103-207 (353)
37 KOG1900|consensus 61.8 1.5E+02 0.0033 33.7 12.9 23 184-206 92-114 (1311)
38 KOG1274|consensus 59.1 2.7E+02 0.0059 30.3 21.8 66 77-144 14-81 (933)
39 TIGR01063 gyrA DNA gyrase, A s 59.0 2.8E+02 0.0061 30.5 15.1 165 17-196 536-715 (800)
40 PF12341 DUF3639: Protein of u 58.6 28 0.0006 19.5 3.7 25 120-144 2-26 (27)
41 KOG2096|consensus 56.5 1.8E+02 0.0039 27.5 19.4 78 353-447 290-367 (420)
42 KOG4441|consensus 56.0 1.3E+02 0.0029 31.5 11.2 159 27-200 323-485 (571)
43 PHA02713 hypothetical protein; 54.5 61 0.0013 33.9 8.6 20 27-46 342-361 (557)
44 PRK05560 DNA gyrase subunit A; 54.3 3.4E+02 0.0073 30.0 14.5 168 19-195 540-717 (805)
45 PF07250 Glyoxal_oxid_N: Glyox 52.4 1.9E+02 0.0041 26.5 11.7 112 83-200 73-190 (243)
46 PHA03098 kelch-like protein; P 51.2 55 0.0012 33.9 7.7 14 32-45 290-303 (534)
47 PF06739 SBBP: Beta-propeller 49.9 20 0.00044 21.8 2.6 17 354-370 15-31 (38)
48 PRK14131 N-acetylneuraminic ac 48.9 2.7E+02 0.0058 27.3 14.2 17 183-199 132-148 (376)
49 TIGR03548 mutarot_permut cycli 48.7 2.5E+02 0.0053 26.8 11.7 16 131-146 164-179 (323)
50 KOG0278|consensus 47.6 2.2E+02 0.0048 26.0 10.0 143 280-451 134-288 (334)
51 PF03785 Peptidase_C25_C: Pept 44.3 47 0.001 24.2 4.0 42 164-205 8-50 (81)
52 PHA03098 kelch-like protein; P 41.7 2.2E+02 0.0047 29.5 10.4 15 32-46 338-352 (534)
53 KOG2280|consensus 40.4 3.9E+02 0.0085 28.7 11.3 144 30-196 97-243 (829)
54 KOG0646|consensus 39.2 4.1E+02 0.0088 26.6 17.2 28 172-199 82-111 (476)
55 KOG0289|consensus 38.6 2.6E+02 0.0056 27.7 9.1 65 353-448 349-417 (506)
56 PF03785 Peptidase_C25_C: Pept 37.4 68 0.0015 23.4 3.9 37 110-146 6-43 (81)
57 PLN03215 ascorbic acid mannose 36.4 1.2E+02 0.0026 29.7 6.8 60 72-145 163-225 (373)
58 KOG1274|consensus 35.9 6.3E+02 0.014 27.8 19.9 150 26-198 14-167 (933)
59 TIGR03548 mutarot_permut cycli 35.2 2.4E+02 0.0053 26.8 8.9 14 35-48 12-25 (323)
60 cd00200 WD40 WD40 domain, foun 35.1 3.2E+02 0.0069 24.2 28.9 131 31-198 25-164 (289)
61 PLN02193 nitrile-specifier pro 32.1 5.6E+02 0.012 26.1 14.5 17 79-96 271-287 (470)
62 PRK02529 petN cytochrome b6-f 32.0 52 0.0011 19.1 2.1 18 34-51 15-32 (33)
63 PLN03215 ascorbic acid mannose 31.8 2E+02 0.0043 28.2 7.4 62 293-370 162-226 (373)
64 PF04841 Vps16_N: Vps16, N-ter 31.6 5.4E+02 0.012 25.7 17.4 69 69-146 81-154 (410)
65 PF13418 Kelch_4: Galactose ox 30.7 49 0.0011 21.0 2.3 17 79-95 4-20 (49)
66 PF07250 Glyoxal_oxid_N: Glyox 29.8 1.5E+02 0.0032 27.2 5.9 71 27-97 119-190 (243)
67 PF11399 DUF3192: Protein of u 29.4 37 0.0008 26.0 1.7 24 431-454 78-101 (102)
68 KOG1034|consensus 29.3 1.2E+02 0.0026 28.8 5.1 58 304-370 323-382 (385)
69 PF01436 NHL: NHL repeat; Int 29.1 93 0.002 17.2 2.9 18 355-372 5-22 (28)
70 KOG2280|consensus 27.4 8.1E+02 0.018 26.5 12.3 136 302-448 96-244 (829)
71 TIGR01063 gyrA DNA gyrase, A s 26.6 9E+02 0.02 26.7 16.8 70 298-369 544-618 (800)
72 KOG1034|consensus 25.5 1.8E+02 0.0038 27.7 5.6 38 412-449 343-382 (385)
73 PHA02790 Kelch-like protein; P 25.2 2.7E+02 0.0058 28.5 7.6 17 80-96 355-371 (480)
74 PHA02790 Kelch-like protein; P 24.7 2.6E+02 0.0057 28.5 7.5 15 132-146 356-370 (480)
75 KOG2055|consensus 24.6 7.3E+02 0.016 24.9 11.5 20 181-200 356-375 (514)
76 KOG0293|consensus 24.5 7E+02 0.015 24.7 12.8 71 115-198 391-469 (519)
77 smart00442 FGF Acidic and basi 23.8 3.9E+02 0.0084 21.5 6.9 65 292-367 3-67 (126)
78 PF03984 DUF346: Repeat of unk 22.4 1.1E+02 0.0024 19.0 2.5 21 77-97 1-21 (40)
79 KOG0278|consensus 22.1 6.2E+02 0.013 23.2 12.0 81 111-204 134-218 (334)
80 PF08450 SGL: SMP-30/Gluconola 21.1 6.1E+02 0.013 22.7 10.2 147 31-189 91-244 (246)
81 KOG1240|consensus 20.9 1.3E+03 0.029 26.6 19.7 77 120-201 1049-1130(1431)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.2e-54 Score=398.87 Aligned_cols=377 Identities=32% Similarity=0.514 Sum_probs=304.1
Q ss_pred ecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCC----CCcEEEEecCceEEEEecCCcEEEeeCCCCC
Q psy1173 24 SEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDL----DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEG 99 (498)
Q Consensus 24 ~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~----~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~g 99 (498)
..-..|..+...-..||+||+|..+|||++.+......|+..+-. -.|++++||+.|+++|++||+||+||.|..|
T Consensus 55 q~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G 134 (476)
T COG5184 55 QIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDG 134 (476)
T ss_pred hhcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccc
Confidence 344666778889999999999999999999877667888888654 5799999999999999999999999999999
Q ss_pred CCCCcC---------------CCCCcccceeeeC------CCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCC
Q psy1173 100 ALGREA---------------EGDSEFIPQTVNL------PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKG 158 (498)
Q Consensus 100 qlg~~~---------------~~~~~~~p~~~~~------~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~ 158 (498)
+||+.. ..+....|..++. +.++++++||++++++|+++|+||.||.++-..+-.|...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 999955 3344668888886 6689999999999999999999999999554444444222
Q ss_pred CCcc----eecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccc
Q psy1173 159 EGIQ----KTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH 234 (498)
Q Consensus 159 ~~~~----~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~ 234 (498)
.... ..|.+++ ...|+++++|.+|.++|+++|++|.||++.+||||....+..... .
T Consensus 215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~----------~-------- 275 (476)
T COG5184 215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLV----------V-------- 275 (476)
T ss_pred ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccc----------c--------
Confidence 2222 3666665 678999999999999999999999999999999998665432110 0
Q ss_pred eeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEE
Q psy1173 235 IDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYA 314 (498)
Q Consensus 235 i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~ 314 (498)
..|.... -..|+.|+||.+|++||+++|++|+
T Consensus 276 ---------------------------------------------lv~~~f~---i~~i~~vacG~~h~~al~~~G~i~a 307 (476)
T COG5184 276 ---------------------------------------------LVGDPFA---IRNIKYVACGKDHSLALDEDGEIYA 307 (476)
T ss_pred ---------------------------------------------ccCChhh---hhhhhhcccCcceEEEEcCCCeEEE
Confidence 1111111 1127889999999999999999999
Q ss_pred EecCCCCcccccCCCC---CccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcE
Q psy1173 315 FGRHDYGRLGLKNVSE---PVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKI 391 (498)
Q Consensus 315 ~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~ 391 (498)
||.|.+|||+.+...+ ..+.|.....+.+..|..|++|..|+++|..+|.+|.||.+..+|||..+...
T Consensus 308 ~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~-------- 379 (476)
T COG5184 308 WGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEIT-------- 379 (476)
T ss_pred eccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccce--------
Confidence 9999999999873221 12345555566667799999999999999999999999999999998876321
Q ss_pred EEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCC-CceeeeeEec
Q psy1173 392 YAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE-DDILEPMKIE 470 (498)
Q Consensus 392 ~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~-~~~~~p~~v~ 470 (498)
..+..|.++....+ +.+++||.+|.++.+.+|+||+||.+.+||||+|+. +.+..|+.++
T Consensus 380 -----------------~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~ 440 (476)
T COG5184 380 -----------------IDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR 440 (476)
T ss_pred -----------------eecCCccccccccc--eEEEEecCccceeeccCCceEEecCchhhhccCCchhhhcccccccc
Confidence 12245555544444 999999999999999999999999999999999888 7788999999
Q ss_pred ccccCCceEEEEeeCCceEEEEec
Q psy1173 471 GKQLNNYTVLQVASGGQHSVILAK 494 (498)
Q Consensus 471 ~~~~~~~~~~~v~~G~~~s~~l~~ 494 (498)
.+.++...++..-||..++++...
T Consensus 441 ~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 441 QPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred ccccCCCceEEeccCcceEEEecc
Confidence 777788999999999998887654
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.9e-44 Score=333.09 Aligned_cols=326 Identities=30% Similarity=0.505 Sum_probs=263.7
Q ss_pred cCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCC----CceeEEeecCCeEEEEEcCCcEEEeCCcCCCCC
Q psy1173 77 GGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLP----KKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152 (498)
Q Consensus 77 g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~----~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g 152 (498)
-..|...++.-..||+||.|...|||.+..+.....|+..++. ..|++++||..|+++|++||.||+||. |..|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~--N~~G 134 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGD--NDDG 134 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEecc--Cccc
Confidence 3456668888899999999999999998887777889888855 689999999999999999999999997 8899
Q ss_pred ccCCCCC-------------C---cceecEEecc------cCCeEEEeccCCeEEEEecCCcEEEEecCCCCcccccccc
Q psy1173 153 SMGLKGE-------------G---IQKTPLKLES------VSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQR 210 (498)
Q Consensus 153 ~lG~~~~-------------~---~~~~p~~v~~------~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~ 210 (498)
+||.... . ...+|.+|+. ..++++++||++++++|+++|+||.||....+.++.+...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 9998772 1 1337888865 5579999999999999999999999999988888766443
Q ss_pred ccccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCC
Q psy1173 211 SASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSD 290 (498)
Q Consensus 211 ~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~ 290 (498)
.... ......|-.+. .
T Consensus 215 ~s~k-------------------------------------------------------------~~~~~~p~~v~---~ 230 (476)
T COG5184 215 NSQK-------------------------------------------------------------TSIQFTPLKVP---K 230 (476)
T ss_pred cccc-------------------------------------------------------------ceeeeeeeecC---c
Confidence 3211 11113343333 4
Q ss_pred CcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCC-CCCcEEEEeccCceeEEEeCCCCEEEEe
Q psy1173 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSL-QDKTITSIACGNCVSFAIDSEGVLYGWG 369 (498)
Q Consensus 291 ~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~-~~~~i~~i~~g~~~~~~lt~~G~v~~wG 369 (498)
..|+++++|.+|.++|+++|++|+||+|..||||........ .+.+++.+ .-..|+.|+||.+|+++|+++|+||+||
T Consensus 231 ~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~-~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G 309 (476)
T COG5184 231 KAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK-LVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWG 309 (476)
T ss_pred hheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc-cccccCChhhhhhhhhcccCcceEEEEcCCCeEEEec
Confidence 569999999999999999999999999999999987665544 44555443 3345899999999999999999999999
Q ss_pred CCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeC
Q psy1173 370 MGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGM 449 (498)
Q Consensus 370 ~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~ 449 (498)
.|.++|||.+++... ..-...|.....+.+..|.++++|..|+++|..+|.||+||+
T Consensus 310 ~n~fgqlg~~~~~~~-----------------------~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 310 VNIFGQLGAGSDGEI-----------------------GALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred cchhcccccCccccc-----------------------ceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 999999998732111 011145666666667679999999999999999999999999
Q ss_pred CCCCCcCCCC--CCceeeeeEecccccCCceEEEEeeCCceEEEEecCC
Q psy1173 450 GNGYQLGNGK--EDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPK 496 (498)
Q Consensus 450 n~~gqLG~g~--~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~ 496 (498)
++.+|||..+ ...+..|+++. ...++.+|+||.+|++..+.++
T Consensus 367 ~~~~qlg~~~~~~~~~~~~~~ls----~~~~~~~v~~gt~~~~~~t~~g 411 (476)
T COG5184 367 GDRGQLGIQEEITIDVSTPTKLS----VAIKLEQVACGTHHNIARTDDG 411 (476)
T ss_pred CccccccCcccceeecCCccccc----cccceEEEEecCccceeeccCC
Confidence 9999999999 56666666654 2367999999999999999886
No 3
>KOG1427|consensus
Probab=100.00 E-value=3.7e-40 Score=286.67 Aligned_cols=362 Identities=23% Similarity=0.388 Sum_probs=287.5
Q ss_pred CCcEEEeeCCCCCCCCCcCCC--CCcccceeee--CCCceeEEe--ecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCC
Q psy1173 87 DGKVYTWGCNDEGALGREAEG--DSEFIPQTVN--LPKKAVQIS--AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEG 160 (498)
Q Consensus 87 ~g~l~~wG~n~~gqlg~~~~~--~~~~~p~~~~--~~~~i~~i~--~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~ 160 (498)
-|++..+|.-...+.|.-... .....|.++. ...+|+-|+ |...|+++|+-+|++|.||. |..||||+++..
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGR--NekGQLGhgD~k 96 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGR--NEKGQLGHGDMK 96 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeeccc--CccCccCccchh
Confidence 367777787776666652221 2345565554 233455555 55679999999999999997 999999999888
Q ss_pred cceecEEec--ccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeee
Q psy1173 161 IQKTPLKLE--SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDV 238 (498)
Q Consensus 161 ~~~~p~~v~--~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i 238 (498)
....|+.|+ ...+|++.+||++|+++|+++|++|.+|.|.+||||.+..... +..|..+-.....|..|
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~---------v~s~~~~~~~~~~v~~v 167 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNE---------VESTPLPCVVSDEVTNV 167 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccc---------cccCCCccccCccceee
Confidence 888999884 4457999999999999999999999999999999999876543 34455555568889999
Q ss_pred eeccceEE-eccCCcEEEEeccCCccccccchhccccCC-------ceeecceeecccCCCcEEEEecCcceeEEEecCC
Q psy1173 239 FTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGN-------TCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEG 310 (498)
Q Consensus 239 ~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~-------~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G 310 (498)
+||..+++ +...+.+..+|...|||||++......... +....|..|..+.+.+|++++||.+|++|+++++
T Consensus 168 ~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nk 247 (443)
T KOG1427|consen 168 ACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNK 247 (443)
T ss_pred ccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCc
Confidence 99999999 999999999999999999987654332221 1134566677888999999999999999999999
Q ss_pred cEEEEecCCCCcccccCCCCCccCCcccCCCC--CCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCC
Q psy1173 311 KIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQ--DKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSE 388 (498)
Q Consensus 311 ~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~ 388 (498)
+||.||-..+|.||+.+..+.. .|+.++.++ ..--.++.||...++.+.+-|.+|.||.+...
T Consensus 248 rVysWGFGGyGRLGHaEqKDEm-vpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~-------------- 312 (443)
T KOG1427|consen 248 RVYSWGFGGYGRLGHAEQKDEM-VPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN-------------- 312 (443)
T ss_pred cEEEeccccccccccccchhhH-HHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC--------------
Confidence 9999999999999987765554 677777654 45667899999999999999999999976421
Q ss_pred CcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCC--Cceeee
Q psy1173 389 GKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE--DDILEP 466 (498)
Q Consensus 389 ~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~--~~~~~p 466 (498)
.+....|.++..+++..+..+.|+..|.++ ..|..+.+||--.+|.++-+.. .....|
T Consensus 313 -------------------ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~P 372 (443)
T KOG1427|consen 313 -------------------GEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAP 372 (443)
T ss_pred -------------------cccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCc
Confidence 122267888888998889999999999876 4555899999888777666555 344467
Q ss_pred eEecccccCCceEEEEeeCCceEEEEecCC
Q psy1173 467 MKIEGKQLNNYTVLQVASGGQHSVILAKPK 496 (498)
Q Consensus 467 ~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~ 496 (498)
.+|+ .+.+..+-+|+||..||++|+++.
T Consensus 373 k~v~--~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 373 KKVD--MLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred cccc--hhcceeccceeeccceEEEEEccc
Confidence 7776 458899999999999999998764
No 4
>KOG1427|consensus
Probab=100.00 E-value=3.7e-39 Score=280.43 Aligned_cols=320 Identities=20% Similarity=0.331 Sum_probs=262.8
Q ss_pred CCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCC--CcEEEEecCceEEEEecCCcEEEe
Q psy1173 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLD--NVVEVVVGGMHTVCLTEDGKVYTW 93 (498)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~--~i~~i~~g~~~~~~l~~~g~l~~w 93 (498)
-..|++...++..|+++++.+|+.|.||.|-.||||++ +......|+.|+.+. +|++-++|++||++|+++|++|.|
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~af 134 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAF 134 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccCccCcc-chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEe
Confidence 34566666778899999999999999999999999999 677888999998664 699999999999999999999999
Q ss_pred eCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcce---------
Q psy1173 94 GCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQK--------- 163 (498)
Q Consensus 94 G~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~--------- 163 (498)
|.|.+||||.+........|.++. ....|+.|+||.++++.|+..+.+..+|. ..+||||++......
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~gl--p~ygqlgh~td~~~~~~~~~~~~~ 212 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGL--PQYGQLGHGTDNEFNMKDSSVRLA 212 (443)
T ss_pred cccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCC--ccccccccCcchhhccccccceee
Confidence 999999999987666655555555 66789999999999999999999999999 889999998655433
Q ss_pred -----ecEEe--cccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccc---ccc
Q psy1173 164 -----TPLKL--ESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPL---KRK 233 (498)
Q Consensus 164 -----~p~~v--~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~---~~~ 233 (498)
.|..| .....|++++||.+|+++++++++||+||..-+|.||+...... ..|..+.+ ...
T Consensus 213 ~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDE----------mvpRlik~Fd~~~r 282 (443)
T KOG1427|consen 213 YEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDE----------MVPRLIKVFDRNNR 282 (443)
T ss_pred eecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhh----------HHHHHHHHhcCCCC
Confidence 12222 35567999999999999999999999999999999998654332 23444432 345
Q ss_pred ceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcE
Q psy1173 234 HIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKI 312 (498)
Q Consensus 234 ~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v 312 (498)
--.++.||+..++ +..-|.||.||.+... .+....|..+..+++.++..+-|+..|.++- .|...
T Consensus 283 g~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~-------------ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~-ad~s~ 348 (443)
T KOG1427|consen 283 GPPNAILGYTGSLNVAEGGQLFMWGKIKNN-------------GEDWMYPKPMMDLSGWNLRWMDSGSMHHFVG-ADSSC 348 (443)
T ss_pred CCcceeeecccceeecccceeEEeeccccC-------------cccccCCCchhhcCCccCCCcCccceeeeec-ccccc
Confidence 5678899999998 9999999999987532 2222788889999999999999998877654 46689
Q ss_pred EEEecCCCCccc-ccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCC
Q psy1173 313 YAFGRHDYGRLG-LKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSE 362 (498)
Q Consensus 313 ~~~G~n~~gqlg-~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~ 362 (498)
..||...+|.+. .+........|.+++.+.+.+|-.|++|..|+++|.++
T Consensus 349 i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 349 ISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcc
Confidence 999987776654 44444555679999999999999999999999999765
No 5
>KOG0783|consensus
Probab=99.96 E-value=3.3e-28 Score=237.70 Aligned_cols=338 Identities=23% Similarity=0.317 Sum_probs=249.7
Q ss_pred cccccCCeEEEEecCCCCCCCCCCCCccccceeeec----CCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCC
Q psy1173 31 KCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVE----DLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAE 106 (498)
Q Consensus 31 ~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~----~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~ 106 (498)
.+.+.-..||+||.|...-||.|+ ......|..|. .+.-+.+|+.+..|++++++.|+||+||....|+||.+ .
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign-~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~g-d 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGN-GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFG-D 213 (1267)
T ss_pred cccCCccceeEecccccccccccC-CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcC-c
Confidence 355667899999999999999996 46777888884 45568999999999999999999999999999999998 5
Q ss_pred CCCcccceeee--CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcce-ecEEe-----cccCCeEEEe
Q psy1173 107 GDSEFIPQTVN--LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQK-TPLKL-----ESVSGIVKIA 178 (498)
Q Consensus 107 ~~~~~~p~~~~--~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~-~p~~v-----~~~~~i~~i~ 178 (498)
+++.+.|++++ ...++.+|++...|+++||++|-||.||. |...|||........ .|.+| .....|+.|+
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~Gl--N~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgva 291 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGL--NGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVA 291 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeec--CcccccCCcCchhhcCchhhhhhHhhcchhhhhhhh
Confidence 57788998888 57899999999999999999999999999 999999998777655 45554 5666899999
Q ss_pred ccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEE-eccCCcEEEEe
Q psy1173 179 SGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSILAFG 257 (498)
Q Consensus 179 ~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~-~~~~g~v~~~G 257 (498)
+|..|+++.++. .||+||.|. ||||..+.... +..|..+.-....+..+.|....++ ++.++.+|++-
T Consensus 292 Ag~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~---------Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~a 360 (1267)
T KOG0783|consen 292 AGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISV---------VTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFA 360 (1267)
T ss_pred cccceeeeeecc-eEEEecccC-ceecCCCCCce---------eecchhhcccccceEEEEecCccEEEEecCCcEEEEe
Confidence 999999999987 699999986 99997555222 4566566556788999999999998 88899999886
Q ss_pred ccCCccccccchhccccCCceeecceeecc----cCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCcc
Q psy1173 258 LNNYSQLGEADSEVQKSGNTCFFTPHLIKS----LSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVT 333 (498)
Q Consensus 258 ~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~----~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~ 333 (498)
+-..-.+...... ...-.+.. ....++++..+.....+++|+-|+||.|-++.. .......
T Consensus 361 dy~~~k~~~n~~~---------lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns------~~~~c~f 425 (1267)
T KOG0783|consen 361 DYNQVKLPFNVDF---------LKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS------TRTSCKF 425 (1267)
T ss_pred cccceecCcchhc---------cceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC------ceeeeec
Confidence 5332222111100 00001110 111346667777888999999999999986542 1222222
Q ss_pred CCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccC
Q psy1173 334 EPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKN 406 (498)
Q Consensus 334 ~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~ 406 (498)
.|..+- .|.+|+-..+..+++|.|| +|=.+...+.-......-....+.++.|-+|.....|...
T Consensus 426 tp~r~~-----~isdIa~~~N~~~~~t~dG---c~~Rg~~~~~~~kSS~~~e~~~~~l~N~~~n~q~v~~I~~ 490 (1267)
T KOG0783|consen 426 TPLRIF-----EISDIAWTANSLILCTRDG---CWKRGLRSKKREKSSSSPESRGPYLYNRIENLQMVVGIRA 490 (1267)
T ss_pred ccceee-----ehhhhhhccceEEEEecCc---ceehhhhhhhhcccccCcccccccccccccchhhhhcccc
Confidence 332222 3668888889999999999 3334444444433333334455566777777666666553
No 6
>KOG1428|consensus
Probab=99.93 E-value=1.7e-24 Score=219.91 Aligned_cols=307 Identities=21% Similarity=0.328 Sum_probs=221.4
Q ss_pred CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCC--cEEE
Q psy1173 118 LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRG--NLLT 195 (498)
Q Consensus 118 ~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g--~v~~ 195 (498)
+.+.-+++-++++..++-..+|+||.-|. +..+|.-... .....+...++|++|+.|-+.+.++.-.| -++.
T Consensus 477 ~~~qtv~L~~~RE~A~iqa~sGKvYYaGn----~t~~Gl~e~G--~nWmEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~ 550 (3738)
T KOG1428|consen 477 LHPQTVDLHFTREMAFIQARSGKVYYAGN----GTRFGLFETG--NNWMELCLPEPIVQISVGIDTIMFRSGAGHGWIAS 550 (3738)
T ss_pred cCchheecccchhhhhhhhcCccEEEecC----ccEEeEEccC--CceEEecCCCceEEEEeccchhheeeccCcceEEe
Confidence 33456678889999999999999999986 3445554444 34444555689999999999877776544 4444
Q ss_pred EecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEE--eccCCcEEEEeccCCccccccchhccc
Q psy1173 196 AGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF--ISSKGSILAFGLNNYSQLGEADSEVQK 273 (498)
Q Consensus 196 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~--~~~~g~v~~~G~n~~gqlg~~~~~~~~ 273 (498)
-++.. ..| .....+|.+..+|..+.+ ..|.+ +.++|++|+.|....-
T Consensus 551 v~D~k--~~~-----------------~~Rr~~P~n~rKIv~v~~-s~~VY~~vSenGkifM~G~~tm~----------- 599 (3738)
T KOG1428|consen 551 VDDKK--RNG-----------------RLRRLVPSNRRKIVHVCA-SGHVYGYVSENGKIFMGGLHTMR----------- 599 (3738)
T ss_pred ccCcc--ccc-----------------chhhcCCCCcceeEEEee-eeEEEEEEccCCeEEeecceeEE-----------
Confidence 43221 111 123344455666776644 44444 9999999999864311
Q ss_pred cCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCcc--------------------
Q psy1173 274 SGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVT-------------------- 333 (498)
Q Consensus 274 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~-------------------- 333 (498)
.-.....+..+++.-|.+++.|..|.++++++|+||+||-|..+|+|.-+......
T Consensus 600 ----~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW 675 (3738)
T KOG1428|consen 600 ----VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTW 675 (3738)
T ss_pred ----ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCcccee
Confidence 00233456677788899999999999999999999999999999999643221110
Q ss_pred ------------------------------------------------------------------------------CC
Q psy1173 334 ------------------------------------------------------------------------------EP 335 (498)
Q Consensus 334 ------------------------------------------------------------------------------~p 335 (498)
.|
T Consensus 676 ~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HP 755 (3738)
T KOG1428|consen 676 LTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHP 755 (3738)
T ss_pred ecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCc
Confidence 00
Q ss_pred cccC---CCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCC
Q psy1173 336 TPIP---SLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVT 412 (498)
Q Consensus 336 ~~i~---~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~ 412 (498)
..+. ..-+-++.+|+||..|+++|.++++||.+|+|.+||||.|+.-. ..
T Consensus 756 s~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~S---------------------------k~ 808 (3738)
T KOG1428|consen 756 SRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLS---------------------------KN 808 (3738)
T ss_pred hheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCcccc---------------------------CC
Confidence 0000 11135899999999999999999999999999999999987432 27
Q ss_pred CCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCc---eeeeeEecccc-cCCceEEEEeeCCce
Q psy1173 413 EPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD---ILEPMKIEGKQ-LNNYTVLQVASGGQH 488 (498)
Q Consensus 413 ~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~---~~~p~~v~~~~-~~~~~~~~v~~G~~~ 488 (498)
.|+.+..+++..+++|++|++|++++..||+||.||.-..|||++...+. -..|-+++.+- ..+..+..|-+-++.
T Consensus 809 ~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDs 888 (3738)
T KOG1428|consen 809 TPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDS 888 (3738)
T ss_pred CcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCc
Confidence 89999999999999999999999999999999999999999999854422 12344444321 246677888888888
Q ss_pred EEEE
Q psy1173 489 SVIL 492 (498)
Q Consensus 489 s~~l 492 (498)
||+-
T Consensus 889 s~i~ 892 (3738)
T KOG1428|consen 889 SIIH 892 (3738)
T ss_pred ceee
Confidence 8864
No 7
>KOG0783|consensus
Probab=99.91 E-value=7.7e-24 Score=207.41 Aligned_cols=311 Identities=22% Similarity=0.287 Sum_probs=226.7
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeC----CCceeEEeecCCeEEEEEcCCcEEEeCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNL----PKKAVQISAGDSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~----~~~i~~i~~g~~~~~~L~~~G~vy~~G~ 146 (498)
|.++-+...| .+++.-.+||.||.|..--||++.... ...|.++.+ ..-+.+|+++..|+++|++.|.||++|.
T Consensus 126 ~~r~~~~~i~-~~~d~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGh 203 (1267)
T KOG0783|consen 126 LSRVLSSTIH-PVLDLPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGH 203 (1267)
T ss_pred Hhhccccccc-cccCCccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEecc
Confidence 4444444333 345555789999999999999977744 457888873 3347789999999999999999999999
Q ss_pred cCCCCCccCCCCCCcceecEEe--cccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCccccc
Q psy1173 147 FRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLE 224 (498)
Q Consensus 147 ~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~ 224 (498)
+..|.||.+.......|.+| ....++.+|++...|+++||++|.||.||-|..+|||........ ..
T Consensus 204 --G~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~---------~~ 272 (1267)
T KOG0783|consen 204 --GAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKK---------DD 272 (1267)
T ss_pred --CCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhc---------Cc
Confidence 88999999988877888777 457889999999999999999999999999999999986654432 23
Q ss_pred Cccccc----cccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCc
Q psy1173 225 PGEVPL----KRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ 300 (498)
Q Consensus 225 p~~i~~----~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 300 (498)
|.++.. ..+.|..+++|..|++...+..||.||.| .||+|..+. ...+..|+.+. .....|.-|+|..
T Consensus 273 p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN-~GQlGi~~n------~~~Vt~Pr~l~-~~~~~v~~v~a~~ 344 (1267)
T KOG0783|consen 273 PIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLN-NGQLGISDN------ISVVTTPRRLA-GLLSPVIHVVATT 344 (1267)
T ss_pred hhhhhhHhhcchhhhhhhhcccceeeeeecceEEEeccc-CceecCCCC------Cceeecchhhc-ccccceEEEEecC
Confidence 333322 13488999999999999999999999987 589998877 66667786553 3345699999999
Q ss_pred ceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccC----CCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCcccc
Q psy1173 301 HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIP----SLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQL 376 (498)
Q Consensus 301 ~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~----~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gql 376 (498)
.-++++++++.+|++-+-..-.+- ...+.. .-..+. ......+++..+....-++||+.|.||.|-.++.-
T Consensus 345 ~ATVc~~~~~~i~~~ady~~~k~~--~n~~~l-ks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-- 419 (1267)
T KOG0783|consen 345 RATVCLLQNNSIIAFADYNQVKLP--FNVDFL-KSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-- 419 (1267)
T ss_pred ccEEEEecCCcEEEEecccceecC--cchhcc-ceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc--
Confidence 999999999999998742211111 000000 000110 01113456667777778999999999999975421
Q ss_pred CCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCC
Q psy1173 377 GNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 442 (498)
Q Consensus 377 g~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g 442 (498)
. ......|.++- .|.+|+--.+-.+++|.||
T Consensus 420 --------------~----------------~~c~ftp~r~~-----~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 420 --------------R----------------TSCKFTPLRIF-----EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred --------------e----------------eeeecccceee-----ehhhhhhccceEEEEecCc
Confidence 0 01113344433 2556777778889999999
No 8
>KOG1428|consensus
Probab=99.90 E-value=9.4e-22 Score=200.29 Aligned_cols=333 Identities=19% Similarity=0.246 Sum_probs=214.3
Q ss_pred eecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEe--cCCcEEEeeCCCCCC
Q psy1173 23 TSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLT--EDGKVYTWGCNDEGA 100 (498)
Q Consensus 23 ~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~--~~g~l~~wG~n~~gq 100 (498)
...++-.+++-+.+|+||..|.. -++|+-. ....+..+....+|++|+.|-....++. .+|-++.-|+.. .
T Consensus 484 L~~~RE~A~iqa~sGKvYYaGn~--t~~Gl~e---~G~nWmEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--~ 556 (3738)
T KOG1428|consen 484 LHFTREMAFIQARSGKVYYAGNG--TRFGLFE---TGNNWMELCLPEPIVQISVGIDTIMFRSGAGHGWIASVDDKK--R 556 (3738)
T ss_pred cccchhhhhhhhcCccEEEecCc--cEEeEEc---cCCceEEecCCCceEEEEeccchhheeeccCcceEEeccCcc--c
Confidence 35667777888899999999963 3455421 1123444444488999999987666665 556666655321 1
Q ss_pred CCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe--cccCCeEEEe
Q psy1173 101 LGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIA 178 (498)
Q Consensus 101 lg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~ 178 (498)
.|. ..+..|. .+++|+.+.+...---.++++|++|+.|... - ........+ ..+.-|.+++
T Consensus 557 ~~~----~Rr~~P~---n~rKIv~v~~s~~VY~~vSenGkifM~G~~t--m--------~~n~SSqmln~L~~~~isslA 619 (3738)
T KOG1428|consen 557 NGR----LRRLVPS---NRRKIVHVCASGHVYGYVSENGKIFMGGLHT--M--------RVNVSSQMLNGLDNVMISSLA 619 (3738)
T ss_pred ccc----hhhcCCC---CcceeEEEeeeeEEEEEEccCCeEEeeccee--E--------EecchHHHhhccccceeehhh
Confidence 111 1122222 4568888865554445788999999999610 0 000011111 3345589999
Q ss_pred ccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcc----cccCccc-cccccceeeeeeccceE----E---
Q psy1173 179 SGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMS----FLEPGEV-PLKRKHIDDVFTGVYNT----F--- 246 (498)
Q Consensus 179 ~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~----~~~p~~i-~~~~~~i~~i~~g~~~~----~--- 246 (498)
.|..|.++++++|.||.||-|+.+|.|+..........+..-. +-.+..- .+.+.......||.-.. +
T Consensus 620 lGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~ 699 (3738)
T KOG1428|consen 620 LGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRV 699 (3738)
T ss_pred ccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccC
Confidence 9999999999999999999999999998554332221111100 1111111 11223333333433222 1
Q ss_pred eccCCcEEEEeccCCcccccc--------ch------------hccccCCceeecceeecc---cCCCcEEEEecCccee
Q psy1173 247 ISSKGSILAFGLNNYSQLGEA--------DS------------EVQKSGNTCFFTPHLIKS---LSDKKFTMLASGQHHS 303 (498)
Q Consensus 247 ~~~~g~v~~~G~n~~gqlg~~--------~~------------~~~~~~~~~~~~p~~i~~---~~~~~i~~i~~g~~~~ 303 (498)
-.-.|.+..+|..+.+-+-.+ .. .....+......|..+.. ..+.++.+|+||..|+
T Consensus 700 ~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~Ht 779 (3738)
T KOG1428|consen 700 PRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHT 779 (3738)
T ss_pred CCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceE
Confidence 123567777776553321110 00 000111222234444332 3356799999999999
Q ss_pred EEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCC
Q psy1173 304 LALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGK 380 (498)
Q Consensus 304 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~ 380 (498)
++|.+|++||+||+|.+||||.++..... .|+.+..+.+.-+++|++|.+|++++..||.||.+|+=.-|||+...
T Consensus 780 VlL~sd~~VfTFG~~~HGQLG~GDt~Sk~-~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 780 VLLASDRRVFTFGSNCHGQLGVGDTLSKN-TPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred EEEecCCcEEEecCCcccccCcCccccCC-CcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 99999999999999999999999887666 89999999999999999999999999999999999998889998653
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.40 E-value=5.9e-13 Score=89.83 Aligned_cols=50 Identities=32% Similarity=0.628 Sum_probs=46.5
Q ss_pred CCCEEEEeCCCCCCcC-CCCCCceeeeeEecccccCCceEEEEeeCCceEEEE
Q psy1173 441 EGVLYGWGMGNGYQLG-NGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVIL 492 (498)
Q Consensus 441 ~g~v~~wG~n~~gqLG-~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l 492 (498)
||+||+||+|++|||| .+.......|++|+.+ .+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~--~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFL--SGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGG--TTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCC--CCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888999999999976 678999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.19 E-value=3.2e-11 Score=81.30 Aligned_cols=49 Identities=37% Similarity=0.476 Sum_probs=42.6
Q ss_pred CCeEEEEecCCCCCCCCCCCCccccceeeecCCC--CcEEEEecCceEEEE
Q psy1173 36 GGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLD--NVVEVVVGGMHTVCL 84 (498)
Q Consensus 36 ~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~--~i~~i~~g~~~~~~l 84 (498)
||+||+||.|.+||||...+......|++|+.+. +|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999554568888999887555 599999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.19 E-value=2.3e-11 Score=70.73 Aligned_cols=30 Identities=40% Similarity=0.728 Sum_probs=26.1
Q ss_pred EEEEEeCCceEEEEeCCCCEEEEeCCCCCC
Q psy1173 425 ITSIACGNCVSFAIDSEGVLYGWGMGNGYQ 454 (498)
Q Consensus 425 i~~i~~g~~~~~~lt~~g~v~~wG~n~~gq 454 (498)
|++|+||..|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.10 E-value=1.4e-10 Score=67.40 Aligned_cols=30 Identities=53% Similarity=1.009 Sum_probs=25.9
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGA 100 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gq 100 (498)
|++|++|..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941|consensus
Probab=99.09 E-value=1.1e-12 Score=131.19 Aligned_cols=186 Identities=24% Similarity=0.421 Sum_probs=136.5
Q ss_pred cceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEe
Q psy1173 281 TPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAID 360 (498)
Q Consensus 281 ~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 360 (498)
.|+.+..+....+.+++||.+|+++++..|+++.||.|.+||++.+....... |.+++.+.+....+|++|..|++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhh
Confidence 45555556666799999999999999999999999999999999985444443 99999999999999999999988877
Q ss_pred C-------CCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCc
Q psy1173 361 S-------EGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNC 433 (498)
Q Consensus 361 ~-------~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~ 433 (498)
. +|.++.+|....+|+|++...+ ...|..+..+-+..+..|+|+-.
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~---------------------------~~~~~~v~e~i~~~~t~ia~~~~ 135 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSLTEN---------------------------EVLPLLVLELIGSRVTRIACVRG 135 (850)
T ss_pred hchhhcchhccccccCCccccccccccccc---------------------------ccccHHHHHHHhhhhHHHHHHHH
Confidence 6 7777777777777777643221 14566666666677999999999
Q ss_pred eEEEEeC-CCCEEEEeCCCCCCcCCCCCCceeeeeEecccc-cCCceEEEEeeCCceEEEEecCCC
Q psy1173 434 VSFAIDS-EGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQ-LNNYTVLQVASGGQHSVILAKPKP 497 (498)
Q Consensus 434 ~~~~lt~-~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~-~~~~~~~~v~~G~~~s~~l~~~~~ 497 (498)
|++++.. -|++|.+|.+..| .+.......+-...... .....+..+++|+++++.+.....
T Consensus 136 ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 136 HTLAIVPRLGQSFSFGKGASG---KGVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HHHhhhhhhcceeecccCCCC---CceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 9998654 5999999998887 11111111111111100 123445678999999999876554
No 14
>KOG0941|consensus
Probab=98.76 E-value=9.9e-11 Score=117.46 Aligned_cols=132 Identities=30% Similarity=0.531 Sum_probs=110.1
Q ss_pred CcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCC
Q psy1173 335 PTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 414 (498)
Q Consensus 335 p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p 414 (498)
|..+..+.-.++.+++||.+|+++++..|+++.||.|.++|+|.+.. .+...|
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---------------------------~~~~~p 57 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---------------------------FPDAKP 57 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---------------------------CCCCCC
Confidence 34444444467999999999999999999999999999999887621 111348
Q ss_pred eecCCCCCCcEEEEEeCCceEEEEeC-------CCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCc
Q psy1173 415 TPIPSLQDKTITSIACGNCVSFAIDS-------EGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQ 487 (498)
Q Consensus 415 ~~v~~~~~~~i~~i~~g~~~~~~lt~-------~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~ 487 (498)
.+++.+.+.+..+|+||.+|+++++. +|.++++|....||+|.+..+....|..+. ++-+.++++|+||-.
T Consensus 58 ~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~--e~i~~~~t~ia~~~~ 135 (850)
T KOG0941|consen 58 EPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVL--ELIGSRVTRIACVRG 135 (850)
T ss_pred ccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCcccccccccccccccccHHHH--HHHhhhhHHHHHHHH
Confidence 99999999899999999999998776 999999999999999998888888888776 457789999999999
Q ss_pred eEEEEecC
Q psy1173 488 HSVILAKP 495 (498)
Q Consensus 488 ~s~~l~~~ 495 (498)
|++..+.+
T Consensus 136 ht~a~v~~ 143 (850)
T KOG0941|consen 136 HTLAIVPR 143 (850)
T ss_pred HHHhhhhh
Confidence 98877653
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=97.48 E-value=0.009 Score=66.08 Aligned_cols=290 Identities=16% Similarity=0.170 Sum_probs=149.5
Q ss_pred CceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe---c-----ccCC--------------eEEE
Q psy1173 120 KKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL---E-----SVSG--------------IVKI 177 (498)
Q Consensus 120 ~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v---~-----~~~~--------------i~~i 177 (498)
...++|....+..|+.+.+|+||.--. ...+.........|... . .... +++=
T Consensus 489 a~A~~VgLs~drLFvADseGkLYsa~l-----~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd 563 (1774)
T PF11725_consen 489 AQAQSVGLSNDRLFVADSEGKLYSADL-----PAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKD 563 (1774)
T ss_pred hhhhheeecCCeEEEEeCCCCEEeccc-----ccccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEec
Confidence 378889999999999999999998643 11222222222233222 0 0011 2333
Q ss_pred eccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccc-cCccccccccceeeeeeccceEEeccCCcEEEE
Q psy1173 178 ASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFL-EPGEVPLKRKHIDDVFTGVYNTFISSKGSILAF 256 (498)
Q Consensus 178 ~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~ 256 (498)
..|..|+++|.+++.-|--|||-...|-.....- +... .|. .-..+--+..-.+-..+|+|+.|
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~G--------L~~~~~p~-------~~~~ldl~r~G~v~L~~G~i~~w 628 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRG--------LPKPPAPA-------PHEILDLGRAGLVGLQDGKIQYW 628 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCC--------CCCCCCCC-------hHHhhccccccceeeccceEeee
Confidence 3456666666666666666666433322111100 0000 111 11112223333443446999999
Q ss_pred eccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCC-CC--------cccccC
Q psy1173 257 GLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHD-YG--------RLGLKN 327 (498)
Q Consensus 257 G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~-~g--------qlg~~~ 327 (498)
-.. +.......-..|.++.-|.+....+..+|+|-..--+. +. .+....
T Consensus 629 D~t----------------------tq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~ 686 (1774)
T PF11725_consen 629 DST----------------------TQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQ 686 (1774)
T ss_pred cCc----------------------chhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCccccccc
Confidence 532 22222211123444555666666666667665332111 00 111111
Q ss_pred CCCCccCCcccCCCCCCcEEEEec-cCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccC
Q psy1173 328 VSEPVTEPTPIPSLQDKTITSIAC-GNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKN 406 (498)
Q Consensus 328 ~~~~~~~p~~i~~~~~~~i~~i~~-g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~ 406 (498)
.++....=..+..++++.|..++. +.+++++|++.|++-..-
T Consensus 687 ~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~------------------------------------- 729 (1774)
T PF11725_consen 687 RRNKVELGDALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ------------------------------------- 729 (1774)
T ss_pred ccCCCCCCccccCCCcCcceeEEEEcCCceEEeccCCcccccc-------------------------------------
Confidence 111111123455666677777765 788999999988765322
Q ss_pred CCCCCCCCeecC--CCCCCcEEEEEeCCceE-EEEeCCCCEEEEeCCCCCCcCCC-CCCceeeeeEecccccCCceEEEE
Q psy1173 407 VSEPVTEPTPIP--SLQDKTITSIACGNCVS-FAIDSEGVLYGWGMGNGYQLGNG-KEDDILEPMKIEGKQLNNYTVLQV 482 (498)
Q Consensus 407 ~~~~~~~p~~v~--~~~~~~i~~i~~g~~~~-~~lt~~g~v~~wG~n~~gqLG~g-~~~~~~~p~~v~~~~~~~~~~~~v 482 (498)
....|+.++ .+++ .|++++.-..|. ++++.+|+||.-=....-+.-.+ .......|+..| .+.++.++
T Consensus 730 ---k~g~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP----~~~~v~~l 801 (1774)
T PF11725_consen 730 ---KPGRPVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP----DEQPVKSL 801 (1774)
T ss_pred ---CCCCCccCCCCCCCc-chhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC----CCCchhhh
Confidence 112344443 3433 599999998854 57999999997433221111111 112334444444 56788888
Q ss_pred eeCCceEEEEecCC
Q psy1173 483 ASGGQHSVILAKPK 496 (498)
Q Consensus 483 ~~G~~~s~~l~~~~ 496 (498)
....+|.+.+.-.+
T Consensus 802 ~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 802 RTNDDNHLSAQIED 815 (1774)
T ss_pred hcCCCCceEEEecC
Confidence 88888888776554
No 16
>KOG3669|consensus
Probab=97.12 E-value=0.34 Score=48.13 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=71.1
Q ss_pred cccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecC-ceEEEEecCCcEE-EeeCCCCCCCCCcCC
Q psy1173 29 TLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGG-MHTVCLTEDGKVY-TWGCNDEGALGREAE 106 (498)
Q Consensus 29 ~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~-~~~~~l~~~g~l~-~wG~n~~gqlg~~~~ 106 (498)
.+.||..+|.+|. |-|...+.......+.+.....+.+|++|. .-..+|+++|.|| -.|-.+..+.|..-.
T Consensus 194 ~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk 266 (705)
T KOG3669|consen 194 TAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK 266 (705)
T ss_pred EEEEEecCCcEEE-------eccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh
Confidence 3345555555554 334444444445566666666899999999 6667999999976 567666666666433
Q ss_pred CCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeC
Q psy1173 107 GDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWG 145 (498)
Q Consensus 107 ~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G 145 (498)
....|+.. ..++.|+.|....-+|+.+|.||+--
T Consensus 267 --dI~tP~~a---~~~v~iSvGt~t~Waldndg~lwfrr 300 (705)
T KOG3669|consen 267 --DIVTPRQA---LEPVCISVGTQTLWALDNDGNLWFRR 300 (705)
T ss_pred --hccCcccc---cceEEEEeccceEEEEecCCcEEEEe
Confidence 12334332 13899999999999999999999753
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.06 E-value=0.25 Score=55.42 Aligned_cols=248 Identities=15% Similarity=0.191 Sum_probs=119.1
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCccccee-eeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQT-VNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRD 149 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~-~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~ 149 (498)
+++=..|..|++.|.+++.=|.-|+|-.-.|=....- -.|.. .+.+..+ +-.++.-.++|. +|+|+.|-. .
T Consensus 560 likd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~---GL~~~~~p~~~~~--ldl~r~G~v~L~-~G~i~~wD~--t 631 (1774)
T PF11725_consen 560 LIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTR---GLPKPPAPAPHEI--LDLGRAGLVGLQ-DGKIQYWDS--T 631 (1774)
T ss_pred EEeccCCceeeccccccCCccCCCCcccceeEeeccC---CCCCCCCCChHHh--hccccccceeec-cceEeeecC--c
Confidence 4445567778888877777777787766544332111 11111 1112223 556888888996 599999975 2
Q ss_pred CCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCC-CCccccccccccccc-cccCcccccCcc
Q psy1173 150 SHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPE-QGQLGRITQRSASRN-ARRGMSFLEPGE 227 (498)
Q Consensus 150 ~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~-~gqlg~~~~~~~~~~-~~~~~~~~~p~~ 227 (498)
.++.-..+. +.|.++.-|-+.-..+-.+|+|----.+. +..+-.+.......+ .+...+.-.+ .
T Consensus 632 tq~W~~~~~-------------kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~-l 697 (1774)
T PF11725_consen 632 TQCWKDAGV-------------KDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDA-L 697 (1774)
T ss_pred chhhhhccC-------------cCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcc-c
Confidence 222211111 11222222322222222333322111000 000000000000000 0000000000 0
Q ss_pred ccccccceeeee-eccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeec--ccCCCcEEEEecCccee
Q psy1173 228 VPLKRKHIDDVF-TGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIK--SLSDKKFTMLASGQHHS 303 (498)
Q Consensus 228 i~~~~~~i~~i~-~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g~~~~ 303 (498)
-.+....|+.++ .+..+.+ ++++|+|-..-.. -.|..+. .++ .+|++++.-..|.
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k~--------------------g~p~~l~~~gl~-G~ik~l~lD~~~n 756 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQKP--------------------GRPVPLSRPGLS-GEIKDLALDEKQN 756 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCccccccCC--------------------CCCccCCCCCCC-cchhheeeccccc
Confidence 012245555555 3444444 8888887654210 1133222 232 3699999988755
Q ss_pred -EEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCC
Q psy1173 304 -LALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 363 (498)
Q Consensus 304 -~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G 363 (498)
+|+|.+|+||..-.-.+-..-.++.... ..+++..+.+.++..+....+|.+++.-++
T Consensus 757 L~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~--~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 757 LYALTSTGELFRLPKEAWQGNAEGDQMAA--KWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eeEecCCCceeecCHHHhhCcccCCcccc--CceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 5799999999765433322222222222 344555557778999999999988887554
No 18
>KOG0315|consensus
Probab=92.50 E-value=4.2 Score=36.46 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=77.0
Q ss_pred EEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee--CCCceeEEeec--CCeEEEEEcCCcEEEeCCcCCCCCccCCC
Q psy1173 82 VCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAG--DSHSVALLEDGTVYAWGSFRDSHGSMGLK 157 (498)
Q Consensus 82 ~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g--~~~~~~L~~~G~vy~~G~~~~~~g~lG~~ 157 (498)
+-||.|++....+.+..=+|-.-....+ .|...- ...+|..|..- ..-.+-=.+||.+.+|-- |+..
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np--~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl-R~~~------ 116 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNP--NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL-RSLS------ 116 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCC--CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec-cCcc------
Confidence 3455555555555444333322222121 132221 33566665543 333444457899999975 2211
Q ss_pred CCCcceecEEecccCCeEEEecc--CCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccce
Q psy1173 158 GEGIQKTPLKLESVSGIVKIASG--ADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHI 235 (498)
Q Consensus 158 ~~~~~~~p~~v~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i 235 (498)
.+.......+|..|..- ..+.+.-+.+|.|++|--..+ ....+.+|.....|
T Consensus 117 ------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~--------------------~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 117 ------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN--------------------SCTHELIPEDDTSI 170 (311)
T ss_pred ------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC--------------------ccccccCCCCCcce
Confidence 11111222344444443 445666678899999953321 22344555556778
Q ss_pred eeeeeccceEE---eccCCcEEEEecc
Q psy1173 236 DDVFTGVYNTF---ISSKGSILAFGLN 259 (498)
Q Consensus 236 ~~i~~g~~~~~---~~~~g~v~~~G~n 259 (498)
+++......++ ..+.|+.|+|-.-
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 88887776665 7899999999653
No 19
>KOG3669|consensus
Probab=90.09 E-value=4.5 Score=40.67 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=83.8
Q ss_pred cCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccC-ceeEEEeCCCCEE-EEeCCCccc
Q psy1173 298 SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGN-CVSFAIDSEGVLY-GWGMGNGYQ 375 (498)
Q Consensus 298 ~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~G~v~-~wG~n~~gq 375 (498)
.|.....||..+|++|.= -|.......-...+.+.... .+.+|++|. ....+++.+|.++ --|--...+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t--~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYT--DLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCC--ccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 566777889999998852 11111111111222333222 488999999 7788999999975 455444444
Q ss_pred cCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCC-CcEEEEEeCCceEEEEeCCCCEEEE-eCCCCC
Q psy1173 376 LGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQD-KTITSIACGNCVSFAIDSEGVLYGW-GMGNGY 453 (498)
Q Consensus 376 lg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~-~~i~~i~~g~~~~~~lt~~g~v~~w-G~n~~g 453 (498)
.|. ....|+...+ ..++.|+.|.....+|+.+|.||.- |.-+.-
T Consensus 261 ~Gd----------------------------------sWkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwfrrgii~~k 306 (705)
T KOG3669|consen 261 EGD----------------------------------SWKDIVTPRQALEPVCISVGTQTLWALDNDGNLWFRRGIISKK 306 (705)
T ss_pred CCc----------------------------------hhhhccCcccccceEEEEeccceEEEEecCCcEEEEecccccC
Confidence 332 1122222222 2399999999999999999999864 332222
Q ss_pred CcCCCCC---CceeeeeEecccccCCceEEEEeeCCceEEEEecC
Q psy1173 454 QLGNGKE---DDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKP 495 (498)
Q Consensus 454 qLG~g~~---~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~ 495 (498)
-+|-+.. .....++... ++.-..+|+.+ +|++++...
T Consensus 307 peg~h~~e~~~s~~~~v~td----q~isf~SV~~n-dqVfaisa~ 346 (705)
T KOG3669|consen 307 PEGDHDHEWQVSITDYVVTD----QCISFQSVIHN-DQVFAISAQ 346 (705)
T ss_pred cccccccccccccccceEEe----cceeeEEEEec-ceEEEEecc
Confidence 2333333 2233343333 44555666554 455555443
No 20
>KOG0646|consensus
Probab=88.49 E-value=27 Score=34.36 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=38.9
Q ss_pred CCCceeEEeecCCeEEEE--EcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEE--EEecCCcE
Q psy1173 118 LPKKAVQISAGDSHSVAL--LEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFV--MLTSRGNL 193 (498)
Q Consensus 118 ~~~~i~~i~~g~~~~~~L--~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~--~l~~~g~v 193 (498)
.|.++..++....-.+++ +..|.+|.|-- +.---|-.- -.--+.|..+....+-++ --.+||.|
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWel--ssG~LL~v~----------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWEL--SSGILLNVL----------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEe--ccccHHHHH----------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 556677787776665555 46899999974 111111000 012334555555555444 44578889
Q ss_pred EEEe
Q psy1173 194 LTAG 197 (498)
Q Consensus 194 ~~~G 197 (498)
++|=
T Consensus 148 ~vW~ 151 (476)
T KOG0646|consen 148 LVWL 151 (476)
T ss_pred EEEE
Confidence 9984
No 21
>KOG0315|consensus
Probab=85.05 E-value=29 Score=31.35 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred cCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEE--EcCCcEEEeCCcCCCCCccCCCCCCcce
Q psy1173 86 EDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVAL--LEDGTVYAWGSFRDSHGSMGLKGEGIQK 163 (498)
Q Consensus 86 ~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L--~~~G~vy~~G~~~~~~g~lG~~~~~~~~ 163 (498)
+||.+-.|-... ...++.+..+.+|..|..-.+.+=++ +.+|.|++|-. +........
T Consensus 103 eDgt~kIWdlR~------------~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl--------~~~~c~~~l 162 (311)
T KOG0315|consen 103 EDGTVKIWDLRS------------LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL--------GENSCTHEL 162 (311)
T ss_pred CCceEEEEeccC------------cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc--------cCCcccccc
Confidence 678888887532 22444445556677777666655444 56799999975 222222222
Q ss_pred ecEEecccCCeEEEeccCCe--EEEEecCCcEEEEec
Q psy1173 164 TPLKLESVSGIVKIASGADH--FVMLTSRGNLLTAGC 198 (498)
Q Consensus 164 ~p~~v~~~~~i~~i~~g~~~--~~~l~~~g~v~~~G~ 198 (498)
.| +....|.+++...+- .++..+.|+.|+|-.
T Consensus 163 iP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 163 IP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 23 223567777777664 557789999999954
No 22
>KOG0943|consensus
Probab=84.63 E-value=0.089 Score=56.36 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCc-CCCCCcccceeee---CCCceeEEeecCCeEEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGRE-AEGDSEFIPQTVN---LPKKAVQISAGDSHSVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~-~~~~~~~~p~~~~---~~~~i~~i~~g~~~~~~L~~~G~vy~~ 144 (498)
.+++.|.+-.+..++|..+|++|.|-+...--+-.. ........|.... ..++|+.+++..-..-+++++|+|-+|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 356777777777789999999999998765333221 1111122332222 457899999999999999999999999
Q ss_pred CCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccc
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLG 205 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg 205 (498)
=.... -|....-....-+++ ...+.+++..|-..|+++.-.++.+|.||.-.+-|-.
T Consensus 454 lDEcg----agV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~est 511 (3015)
T KOG0943|consen 454 LDECG----AGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSEST 511 (3015)
T ss_pred Hhhhh----hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehhhh
Confidence 64211 122111111122233 3445677888888899999999999999976655543
No 23
>KOG0943|consensus
Probab=84.38 E-value=0.14 Score=54.87 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=85.8
Q ss_pred ccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEE-ec
Q psy1173 170 SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF-IS 248 (498)
Q Consensus 170 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~-~~ 248 (498)
...+++.|.+-....++|..+|++|.|-|...--+-..-....+ .....-..+.+...+|..+++..-... .+
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn------~dHPd~a~iG~hge~ii~lSanniR~si~T 445 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKN------LDHPDAAFIGLHGEKIILLSANNIRASIAT 445 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccC------CCCCccceecccCCeeEEeecCceeeeeee
Confidence 34468888888889999999999999998765433221111111 111222334456888999988887766 99
Q ss_pred cCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCC
Q psy1173 249 SKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYG 321 (498)
Q Consensus 249 ~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~g 321 (498)
.+|.|.+|=.-......+... . ...++ ....+..+++.-|...|.++..+|+-+|-||--.+.
T Consensus 446 ~nghlasWlDEcgagV~fkLa--------~-ea~Tk-ieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 446 ENGHLASWLDECGAGVAFKLA--------H-EAQTK-IEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred cCCchhhHHhhhhhhhhhhhh--------h-hhhhh-hhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 999999995422111111110 0 00111 123445577777888999999999999999954433
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.38 E-value=7 Score=35.07 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=45.0
Q ss_pred CcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccC-----CCCCCcEEEEeccCce-eEEEeCCCC
Q psy1173 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIP-----SLQDKTITSIACGNCV-SFAIDSEGV 364 (498)
Q Consensus 291 ~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~-----~~~~~~i~~i~~g~~~-~~~lt~~G~ 364 (498)
.++..+.|...+.+++|++|.+|+|--...-.+-. . ....|..-. ......|+.+...... -++..++|+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~-~---~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~ 88 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP-P---VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD 88 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC-C---ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 45888999999999999999999997433111100 0 000111100 0233567666665444 344457788
Q ss_pred EEEEeCC
Q psy1173 365 LYGWGMG 371 (498)
Q Consensus 365 v~~wG~n 371 (498)
.|+|-.+
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 8887643
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.86 E-value=9.5 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=25.9
Q ss_pred CCcEEEEeccCceeEEEeCCCCEEEEeCCC
Q psy1173 343 DKTITSIACGNCVSFAIDSEGVLYGWGMGN 372 (498)
Q Consensus 343 ~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~ 372 (498)
+.+++.+.+-..+-+|+|++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 356888999999999999999999998543
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=78.49 E-value=50 Score=29.67 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=52.4
Q ss_pred CCcEEEEecC--ceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecCC--eEEEEEcCCcEEE
Q psy1173 69 DNVVEVVVGG--MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDS--HSVALLEDGTVYA 143 (498)
Q Consensus 69 ~~i~~i~~g~--~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~--~~~~L~~~G~vy~ 143 (498)
..|..+.... ...++...+|.++.|-..... ....+. ....+..+..... ..++...+|.+++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3455555544 334444568889888654321 111111 2233445554443 4555566899999
Q ss_pred eCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccCC-eEEEEec-CCcEEEEecC
Q psy1173 144 WGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGAD-HFVMLTS-RGNLLTAGCP 199 (498)
Q Consensus 144 ~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~-~~~~l~~-~g~v~~~G~n 199 (498)
|-... . .....+ .....+..+..... ..++... ++.++.|-..
T Consensus 78 ~~~~~--~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 78 WDLET--G-----------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEcCc--c-----------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 97511 1 011111 12234555555443 3344444 8888888543
No 27
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.98 E-value=38 Score=31.22 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=79.2
Q ss_pred ecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEec---CceEEEEecCCcEEEeeCCC-CC
Q psy1173 24 SEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVG---GMHTVCLTEDGKVYTWGCND-EG 99 (498)
Q Consensus 24 ~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g---~~~~~~l~~~g~l~~wG~n~-~g 99 (498)
..+.-+.++...||.||.-++. .|.+|.=. |. ...++.+..| .-|.+++..||..|.+-... -+
T Consensus 60 ~G~ap~dvapapdG~VWft~qg-~gaiGhLd-------P~----tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQG-TGAIGHLD-------PA----TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCCCccccccCCCCceEEecCc-cccceecC-------CC----CCceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 3456677888999999987654 23333321 11 1334455444 35788888999999886432 12
Q ss_pred CCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEec
Q psy1173 100 ALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS 179 (498)
Q Consensus 100 qlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~ 179 (498)
+++.... ....+|.. .+.+-+.-.+.+++..|+||.-|. ...+|.|-.........|.. .-
T Consensus 128 R~dpkt~-evt~f~lp-------~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP----------qG 188 (353)
T COG4257 128 RLDPKTL-EVTRFPLP-------LEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAP----------QG 188 (353)
T ss_pred EecCccc-ceEEeecc-------cccCCCcccceeeCCCccEEEeec-cccceecCcccCceeeeccC----------CC
Confidence 2221111 11222222 344555567788999999999986 23344332222211111111 01
Q ss_pred cCCeEEEEecCCcEEEE
Q psy1173 180 GADHFVMLTSRGNLLTA 196 (498)
Q Consensus 180 g~~~~~~l~~~g~v~~~ 196 (498)
+.-..++.+.+|+||..
T Consensus 189 ~gpyGi~atpdGsvwya 205 (353)
T COG4257 189 GGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCcceEECCCCcEEEE
Confidence 23367889999999976
No 28
>KOG1900|consensus
Probab=75.49 E-value=1.5e+02 Score=33.66 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=103.3
Q ss_pred EEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCC-ceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCC
Q psy1173 82 VCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPK-KAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEG 160 (498)
Q Consensus 82 ~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~-~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~ 160 (498)
+=+|.|.+||.|-.+..+++..-......-....+-.++ .| ..--=.|.++|...=+++..|-.. ...+.+.....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgv--Fv~~IqhlLvvaT~~ei~ilgV~~-~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGV--FVPEIQHLLVVATPVEIVILGVSF-DEFTGELSIFN 169 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCc--chhhhheeEEecccceEEEEEEEe-ccccCcccccc
Confidence 456889999999998877665422221111111111110 00 001124778887777888888511 11111111111
Q ss_pred cceecEEecccCCeEEEec-cCCeEEE-EecCCcEEEEecCCC-----Cccccccccc--cccc-cccCcccccCccccc
Q psy1173 161 IQKTPLKLESVSGIVKIAS-GADHFVM-LTSRGNLLTAGCPEQ-----GQLGRITQRS--ASRN-ARRGMSFLEPGEVPL 230 (498)
Q Consensus 161 ~~~~p~~v~~~~~i~~i~~-g~~~~~~-l~~~g~v~~~G~n~~-----gqlg~~~~~~--~~~~-~~~~~~~~~p~~i~~ 230 (498)
. ..+|+. |-.-.++ -+++|++|.-|.+.. .|...+.... .... .........|..+..
T Consensus 170 ~------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 170 T------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred c------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 1 133333 3333333 367777777665431 1222211111 1111 111112333443333
Q ss_pred ---cccceeeeeeccceEE---eccCCcEEEEeccCCccccccchhccccC--CceeecceeecccCCCcEEEEe-----
Q psy1173 231 ---KRKHIDDVFTGVYNTF---ISSKGSILAFGLNNYSQLGEADSEVQKSG--NTCFFTPHLIKSLSDKKFTMLA----- 297 (498)
Q Consensus 231 ---~~~~i~~i~~g~~~~~---~~~~g~v~~~G~n~~gqlg~~~~~~~~~~--~~~~~~p~~i~~~~~~~i~~i~----- 297 (498)
...+|++++......+ +++.|.+-+|-....|..+.......... ......-..+.......|++|+
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~ 317 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSAS 317 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcc
Confidence 3679999999888887 67788877776655554443221100000 0000000011111122344444
Q ss_pred -cCcceeEEEecCC-cEEEEec
Q psy1173 298 -SGQHHSLALNSEG-KIYAFGR 317 (498)
Q Consensus 298 -~g~~~~~~lt~~G-~v~~~G~ 317 (498)
.-+-|.+|+|..| ++|.-|+
T Consensus 318 es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 318 ESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccceeEEEEecCCeEEEEecc
Confidence 3456999999999 5777664
No 29
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.16 E-value=7.9 Score=22.93 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCceeEEeecC-CeEEEEEcCCcEEEe
Q psy1173 119 PKKAVQISAGD-SHSVALLEDGTVYAW 144 (498)
Q Consensus 119 ~~~i~~i~~g~-~~~~~L~~~G~vy~~ 144 (498)
+..+++|++|. ....+++.+|.+|..
T Consensus 7 ~g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 7 PGELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 36889999999 889999999999964
No 30
>KOG0291|consensus
Probab=73.95 E-value=1.3e+02 Score=32.02 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=83.4
Q ss_pred eecCCCCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeE-EEEEcCCc
Q psy1173 64 LVEDLDNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHS-VALLEDGT 140 (498)
Q Consensus 64 ~v~~~~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~-~~L~~~G~ 140 (498)
++....+|+.|+.... +.+++++.|+....-.- ....--.+.+..++-.|..+.+.. +|+....-
T Consensus 51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~------------~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~ 118 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTLLLAVDERGRALLVSLL------------SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNL 118 (893)
T ss_pred EeecCCceEEEEeCCCceEEEEEcCCCcEEEEecc------------cceeeEEEeecCccceEEECCCCcEEEEEecce
Confidence 4445567888888876 77777888886654421 122233344677788888877744 34444444
Q ss_pred EEEeCCcCCCCCccCCCCCCcceecEE-----ecccCCeEEEeccCCeEEEE--ecCCcEEEEecCCCCccccccccccc
Q psy1173 141 VYAWGSFRDSHGSMGLKGEGIQKTPLK-----LESVSGIVKIASGADHFVML--TSRGNLLTAGCPEQGQLGRITQRSAS 213 (498)
Q Consensus 141 vy~~G~~~~~~g~lG~~~~~~~~~p~~-----v~~~~~i~~i~~g~~~~~~l--~~~g~v~~~G~n~~gqlg~~~~~~~~ 213 (498)
|-+|-.. +.......|-. .....+|+.|.-..+.-+++ ++|-.+..|+.+..-.+
T Consensus 119 lqiw~~P---------~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~--------- 180 (893)
T KOG0291|consen 119 LQIWHAP---------GEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL--------- 180 (893)
T ss_pred eEEEecC---------cchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------
Confidence 5556431 11111122211 13445677777666644444 45666777764432111
Q ss_pred cccccCcccccCccccccccc-eeeee-eccceEE-eccCCcEEEEecc
Q psy1173 214 RNARRGMSFLEPGEVPLKRKH-IDDVF-TGVYNTF-ISSKGSILAFGLN 259 (498)
Q Consensus 214 ~~~~~~~~~~~p~~i~~~~~~-i~~i~-~g~~~~~-~~~~g~v~~~G~n 259 (498)
.+..+..-... +..++ +...+.+ +..+|.++.|..+
T Consensus 181 ----------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 181 ----------FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred ----------ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 11111111222 22222 2334445 9999999999987
No 31
>KOG2106|consensus
Probab=71.55 E-value=1.2e+02 Score=30.59 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=32.5
Q ss_pred CceeEEeecCCeEEE-EEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEE
Q psy1173 120 KKAVQISAGDSHSVA-LLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLT 195 (498)
Q Consensus 120 ~~i~~i~~g~~~~~~-L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~ 195 (498)
+.+..+..+.+.-++ =+++|.+++|+. ..+ ++ .+.+. +.-|.-+++++-.+|+|.+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~--~~~---------------~~--~k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSK--GTN---------------RI--SKQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeC--CCc---------------eE--EeEee-ecCCceEEEEEecCccEee
Confidence 456667666654443 357799999986 100 11 01122 4456667777777777666
No 32
>KOG0291|consensus
Probab=70.18 E-value=1.5e+02 Score=31.42 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=83.0
Q ss_pred cceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCc
Q psy1173 233 KHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGK 311 (498)
Q Consensus 233 ~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~ 311 (498)
....++.......+ ..-||+|-.|-..+|-.+- ....|.+++ ..+++.+..|+
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR------------Tft~P~p~Q--------------fscvavD~sGe 448 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR------------TFTSPEPIQ--------------FSCVAVDPSGE 448 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccceee------------eecCCCcee--------------eeEEEEcCCCC
Confidence 33444555555555 8889999999876553321 112333322 23667777788
Q ss_pred EEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccC---ceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCC
Q psy1173 312 IYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGN---CVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSE 388 (498)
Q Consensus 312 v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~ 388 (498)
|.+.|.-.. ....+..++.-+..+|-.|- =+.+.+...|.+.+-|+=. ..
T Consensus 449 lV~AG~~d~-------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--------------kT 501 (893)
T KOG0291|consen 449 LVCAGAQDS-------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--------------KT 501 (893)
T ss_pred EEEeeccce-------------EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--------------ce
Confidence 777774210 12223333333455554443 3445566666665555310 01
Q ss_pred CcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCC
Q psy1173 389 GKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGN 457 (498)
Q Consensus 389 ~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~ 457 (498)
-++|..=+ +.....|.++ ..+.--+.+.....-.++.|-||++--|-.++..|+|.
T Consensus 502 VRiW~if~-----------s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 502 VRIWDIFS-----------SSGTVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred EEEEEeec-----------cCceeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 11111100 0001222222 23322344444577888899999999999999999954
No 33
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=68.87 E-value=13 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.518 Sum_probs=21.3
Q ss_pred cEEEEEeCC-ceEEEEeCCCCEEEE
Q psy1173 424 TITSIACGN-CVSFAIDSEGVLYGW 447 (498)
Q Consensus 424 ~i~~i~~g~-~~~~~lt~~g~v~~w 447 (498)
++++|++|. ....+++.+|++|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 589999999 888999999999864
No 34
>KOG4441|consensus
Probab=67.81 E-value=72 Score=33.44 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=15.8
Q ss_pred EeccCceeEEEeCCCCEEEEeC
Q psy1173 349 IACGNCVSFAIDSEGVLYGWGM 370 (498)
Q Consensus 349 i~~g~~~~~~lt~~G~v~~wG~ 370 (498)
......+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 3445666666777899999984
No 35
>PHA02713 hypothetical protein; Provisional
Probab=67.41 E-value=57 Score=34.11 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=14.8
Q ss_pred ecCceEEEEecCCcEEEeeCC
Q psy1173 76 VGGMHTVCLTEDGKVYTWGCN 96 (498)
Q Consensus 76 ~g~~~~~~l~~~g~l~~wG~n 96 (498)
..+.+..+..-+|+||+.|..
T Consensus 340 ~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 340 KNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred chhhceeEEEECCEEEEECCc
Confidence 345555566678999999954
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.81 E-value=1.1e+02 Score=28.39 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred cCcCcccccccCCeEEEEecC-CCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCC-CCCCC
Q psy1173 25 EAVPTLKCKTGGGVVLTCGQG-DTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCND-EGALG 102 (498)
Q Consensus 25 ~~~~~~~~~~~~g~v~~wG~n-~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~-~gqlg 102 (498)
.+.-|.+.+.+||..|++-.. ..++++.. .-.....|.+ .+.+-+.-.+.+++.+|+||.-|.+- +|+|-
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk-t~evt~f~lp-------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLd 174 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGLAIGRLDPK-TLEVTRFPLP-------LEHADANLETAVFDPWGNLWFTGQIGAYGRLD 174 (353)
T ss_pred CCCCceEEECCCCCeeEecCcceeEEecCc-ccceEEeecc-------cccCCCcccceeeCCCccEEEeeccccceecC
Confidence 446677888999999998765 23333221 1111222222 34455666788999999999999642 23322
Q ss_pred CcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCC
Q psy1173 103 REAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~ 146 (498)
.... ....+|.+ .-+.-..++.+-+|+||.-..
T Consensus 175 Pa~~-~i~vfpaP----------qG~gpyGi~atpdGsvwyasl 207 (353)
T COG4257 175 PARN-VISVFPAP----------QGGGPYGICATPDGSVWYASL 207 (353)
T ss_pred cccC-ceeeeccC----------CCCCCcceEECCCCcEEEEec
Confidence 2111 11111111 112234567889999998743
No 37
>KOG1900|consensus
Probab=61.79 E-value=1.5e+02 Score=33.66 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=18.1
Q ss_pred EEEEecCCcEEEEecCCCCcccc
Q psy1173 184 FVMLTSRGNLLTAGCPEQGQLGR 206 (498)
Q Consensus 184 ~~~l~~~g~v~~~G~n~~gqlg~ 206 (498)
-+-+|.|+++|.|-.++.+++-.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~ 114 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAE 114 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCcccc
Confidence 35789999999999887666644
No 38
>KOG1274|consensus
Probab=59.08 E-value=2.7e+02 Score=30.34 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=42.8
Q ss_pred cCceEEEEecCCc-EEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecCCeEEEEEcCCcEEEe
Q psy1173 77 GGMHTVCLTEDGK-VYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDSHSVALLEDGTVYAW 144 (498)
Q Consensus 77 g~~~~~~l~~~g~-l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~~~~~L~~~G~vy~~ 144 (498)
++...++++.+|+ |+++|.+.. +-.-........|..+. ..+.|..|++-..+.+.=++++.|-..
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~--ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGD--IRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCc--eEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEe
Confidence 3445567787876 556665532 22222222235677777 778899999998888888888875443
No 39
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=59.04 E-value=2.8e+02 Score=30.52 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=82.4
Q ss_pred CcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCC---ccccceeeecCCCCcEEEEec-----CceEEEEecCC
Q psy1173 17 SQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDV---MERKTFALVEDLDNVVEVVVG-----GMHTVCLTEDG 88 (498)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~---~~~~~p~~v~~~~~i~~i~~g-----~~~~~~l~~~g 88 (498)
............+.++++..|++|..=.. +|....-. ........+...++|+.+.+- ....+++|.+|
T Consensus 536 ~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~G 612 (800)
T TIGR01063 536 FIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNG 612 (800)
T ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCC
Confidence 33344444556667999999999998332 22221100 011111234556677776652 23567888998
Q ss_pred cEEEeeCCCCCC---CCCcCCCCCcccceeeeCCCceeEEe--ecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcce
Q psy1173 89 KVYTWGCNDEGA---LGREAEGDSEFIPQTVNLPKKAVQIS--AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQK 163 (498)
Q Consensus 89 ~l~~wG~n~~gq---lg~~~~~~~~~~p~~~~~~~~i~~i~--~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~ 163 (498)
.+.-.=...+-. .|.. -..+.....++.+. ....+.+++|++|++|.+-. ..-...+.......
T Consensus 613 yiKRi~l~~~~~~~r~G~~--------aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v--~eIp~~gr~~~Gv~- 681 (800)
T TIGR01063 613 VVKKTSLTEFSNIRSNGII--------AIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPE--EDVRPMGRAARGVR- 681 (800)
T ss_pred EEEEEEhHHhhhhccCCcc--------cccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEh--hhcCCcCCCCCCee-
Confidence 776543222211 1110 00011122333332 23456889999999999865 22222232222111
Q ss_pred ecEEecccCCeEEEecc--CCeEEEEecCCcEEEE
Q psy1173 164 TPLKLESVSGIVKIASG--ADHFVMLTSRGNLLTA 196 (498)
Q Consensus 164 ~p~~v~~~~~i~~i~~g--~~~~~~l~~~g~v~~~ 196 (498)
...+...++|+.+..- ..+.+++|++|.+.-.
T Consensus 682 -~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 682 -GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred -cccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 1234455666665542 2346677777765543
No 40
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=58.63 E-value=28 Score=19.46 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred CceeEEeecCCeEEEEEcCCcEEEe
Q psy1173 120 KKAVQISAGDSHSVALLEDGTVYAW 144 (498)
Q Consensus 120 ~~i~~i~~g~~~~~~L~~~G~vy~~ 144 (498)
+.|..|++|....++.|+.+-|.+|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5789999999999999998887765
No 41
>KOG2096|consensus
Probab=56.48 E-value=1.8e+02 Score=27.51 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=50.9
Q ss_pred CceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCC
Q psy1173 353 NCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGN 432 (498)
Q Consensus 353 ~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~ 432 (498)
....+-+..||+.-.|--+-.|.++.++...- ..... .......|.++...++.++-.++.|.
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk--~g~~p---------------l~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILK--EGSAP---------------LHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhh--cCCcc---------------hhhcCCCceEEEeCCCCcEEEeecCC
Confidence 34456667899999999999988887653221 00000 01112567777777777788888888
Q ss_pred ceEEEEeCCCCEEEE
Q psy1173 433 CVSFAIDSEGVLYGW 447 (498)
Q Consensus 433 ~~~~~lt~~g~v~~w 447 (498)
.--+.-+++|+.|-.
T Consensus 353 ~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 353 DLKVFASEDGKDYPE 367 (420)
T ss_pred ceEEEEcccCccchh
Confidence 877777877776643
No 42
>KOG4441|consensus
Probab=56.01 E-value=1.3e+02 Score=31.52 Aligned_cols=159 Identities=17% Similarity=0.119 Sum_probs=71.2
Q ss_pred cCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCC
Q psy1173 27 VPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAE 106 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~ 106 (498)
+.+..+..-+|.||+.|--+.|..-+. ......|... .-..+-.+...+....+..-+|.||+-|--. |...-
T Consensus 323 r~~~~~~~~~~~lYv~GG~~~~~~~l~--~ve~YD~~~~-~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d----g~~~l 395 (571)
T KOG4441|consen 323 RCRVGVAVLNGKLYVVGGYDSGSDRLS--SVERYDPRTN-QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD----GEKSL 395 (571)
T ss_pred cccccEEEECCEEEEEccccCCCcccc--eEEEecCCCC-ceeccCCccCccccceeEEECCEEEEEeccc----ccccc
Confidence 444555667889999997554221111 0111111110 0112233333444455566789999998432 22111
Q ss_pred -CCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEecc---CC
Q psy1173 107 -GDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASG---AD 182 (498)
Q Consensus 107 -~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g---~~ 182 (498)
....+.|..-.. ..+-.+...+....+..-+|+||+.|-.++....| ..-.... +....+..+..- ..
T Consensus 396 ~svE~YDp~~~~W-~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l---~sve~YD----P~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 396 NSVECYDPVTNKW-TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL---NSVECYD----PETNTWTLIAPMNTRRS 467 (571)
T ss_pred ccEEEecCCCCcc-cccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc---ceEEEEc----CCCCceeecCCcccccc
Confidence 111222222111 11112222444455566789999999522111100 1111111 222333333322 22
Q ss_pred eEEEEecCCcEEEEecCC
Q psy1173 183 HFVMLTSRGNLLTAGCPE 200 (498)
Q Consensus 183 ~~~~l~~~g~v~~~G~n~ 200 (498)
+.-+..-++.||+.|-.+
T Consensus 468 ~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred cceEEEECCEEEEECCcc
Confidence 333666778999998544
No 43
>PHA02713 hypothetical protein; Provisional
Probab=54.52 E-value=61 Score=33.89 Aligned_cols=20 Identities=5% Similarity=0.002 Sum_probs=13.8
Q ss_pred cCcccccccCCeEEEEecCC
Q psy1173 27 VPTLKCKTGGGVVLTCGQGD 46 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~n~ 46 (498)
+....+..-+|+||+.|...
T Consensus 342 R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred hhceeEEEECCEEEEECCcC
Confidence 33444556789999999753
No 44
>PRK05560 DNA gyrase subunit A; Validated
Probab=54.28 E-value=3.4e+02 Score=29.97 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=81.7
Q ss_pred ceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecC-----ceEEEEecCCcEEEe
Q psy1173 19 KVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGG-----MHTVCLTEDGKVYTW 93 (498)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~-----~~~~~l~~~g~l~~w 93 (498)
............++++..|++|..=...--..+....-........+...++|+.+.+-. ...++++.+|.+.--
T Consensus 540 ~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 540 EHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred EEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 334444456667899999999998665322211100000111112334556777777644 356788899876644
Q ss_pred eCCCCCCCCCcCCCCCcccceeeeCCCceeEEe--ecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEeccc
Q psy1173 94 GCNDEGALGREAEGDSEFIPQTVNLPKKAVQIS--AGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESV 171 (498)
Q Consensus 94 G~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~--~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~ 171 (498)
-...+-....+ ...-..+.....++.+. ......+++|+.|++|.+-. ..-...+...... .-..+...
T Consensus 620 ~l~~~~~~~r~-----G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~--~eIp~~gr~~~Gv--~~i~L~~~ 690 (805)
T PRK05560 620 SLSEFSNIRSN-----GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPE--SDVRPMGRTARGV--RGIKLREG 690 (805)
T ss_pred EhHHhhhcccC-----CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEh--hhcCccCcccCCc--ccccCCCC
Confidence 32221100000 00001111223343333 33456889999999998865 2121222221111 11223445
Q ss_pred CCeEEEeccC---CeEEEEecCCcEEE
Q psy1173 172 SGIVKIASGA---DHFVMLTSRGNLLT 195 (498)
Q Consensus 172 ~~i~~i~~g~---~~~~~l~~~g~v~~ 195 (498)
+.|+.+..-. .+.+++|+.|.+.-
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr 717 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKR 717 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEE
Confidence 5566655432 24667777776553
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.42 E-value=1.9e+02 Score=26.47 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=55.2
Q ss_pred EEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee----CCCceeEEee-cCCeEEEEEcCCcEEEeCCcCCCCCccCCC
Q psy1173 83 CLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN----LPKKAVQISA-GDSHSVALLEDGTVYAWGSFRDSHGSMGLK 157 (498)
Q Consensus 83 ~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~----~~~~i~~i~~-g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~ 157 (498)
++..||++...|-+..|.-+. ..+.|.... ..+...+++. -|+-+..+..||+|.+.|-..+...+.=..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~i-----r~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAI-----RIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCCCCEEEeCCCCccccce-----EEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCC
Confidence 345789999888665533221 222232200 1111222333 457788888999999999522111110000
Q ss_pred CCCcceecEEecccCCeEE-EeccCCeEEEEecCCcEEEEecCC
Q psy1173 158 GEGIQKTPLKLESVSGIVK-IASGADHFVMLTSRGNLLTAGCPE 200 (498)
Q Consensus 158 ~~~~~~~p~~v~~~~~i~~-i~~g~~~~~~l~~~g~v~~~G~n~ 200 (498)
......+..+.......+ .....+-.+.|..+|+||.++.+.
T Consensus 148 -~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 148 -KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred -ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 000111222221222221 223444578899999999998653
No 46
>PHA03098 kelch-like protein; Provisional
Probab=51.21 E-value=55 Score=33.94 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=10.6
Q ss_pred ccccCCeEEEEecC
Q psy1173 32 CKTGGGVVLTCGQG 45 (498)
Q Consensus 32 ~~~~~g~v~~wG~n 45 (498)
++..++.||+.|..
T Consensus 290 ~~~~~~~lyv~GG~ 303 (534)
T PHA03098 290 SVVLNNVIYFIGGM 303 (534)
T ss_pred EEEECCEEEEECCC
Confidence 45577899999954
No 47
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=49.91 E-value=20 Score=21.80 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.8
Q ss_pred ceeEEEeCCCCEEEEeC
Q psy1173 354 CVSFAIDSEGVLYGWGM 370 (498)
Q Consensus 354 ~~~~~lt~~G~v~~wG~ 370 (498)
.+.++++.+|+||+.|.
T Consensus 15 ~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGY 31 (38)
T ss_pred EEEEEECCCCCEEEEEe
Confidence 45789999999999995
No 48
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=48.95 E-value=2.7e+02 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=12.3
Q ss_pred eEEEEecCCcEEEEecC
Q psy1173 183 HFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 183 ~~~~l~~~g~v~~~G~n 199 (498)
|+++...+++||++|-.
T Consensus 132 ~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 132 HVAVSLHNGKAYITGGV 148 (376)
T ss_pred eEEEEeeCCEEEEECCC
Confidence 55454478999999864
No 49
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=48.68 E-value=2.5e+02 Score=26.77 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=11.4
Q ss_pred eEEEEEcCCcEEEeCC
Q psy1173 131 HSVALLEDGTVYAWGS 146 (498)
Q Consensus 131 ~~~~L~~~G~vy~~G~ 146 (498)
+..+..-+++||++|-
T Consensus 164 ~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 164 QPVCVKLQNELYVFGG 179 (323)
T ss_pred cceEEEECCEEEEEcC
Confidence 3444556789999994
No 50
>KOG0278|consensus
Probab=47.59 E-value=2.2e+02 Score=25.96 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=71.1
Q ss_pred ecceeecccCCCcEEEEecCcceeEEE-ecCCcEEEEecCCCCcccccCCCCCccCCcccC---CCCCCcEEEEeccCce
Q psy1173 280 FTPHLIKSLSDKKFTMLASGQHHSLAL-NSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIP---SLQDKTITSIACGNCV 355 (498)
Q Consensus 280 ~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~---~~~~~~i~~i~~g~~~ 355 (498)
..|+++..-.+.-=.-+.|..+++++- +.++.|--|-.-. +........+.++. .-.+-+|+.|+-|.
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT------gt~v~sL~~~s~VtSlEvs~dG~ilTia~gs-- 205 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT------GTEVQSLEFNSPVTSLEVSQDGRILTIAYGS-- 205 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc------CcEEEEEecCCCCcceeeccCCCEEEEecCc--
Confidence 456666554443334466777888776 7788888886422 11111111222222 22233454444443
Q ss_pred eEEEeCCCCEEEEeCCCccccC-----CCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEE---
Q psy1173 356 SFAIDSEGVLYGWGMGNGYQLG-----NGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITS--- 427 (498)
Q Consensus 356 ~~~lt~~G~v~~wG~n~~gqlg-----~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~--- 427 (498)
.|--|-....+-|= ..-...-|.-+..+|.+|.++.-.. ++....+..+.+
T Consensus 206 --------sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~-------------kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 206 --------SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVY-------------KFDYNTGEEIGSYNK 264 (334)
T ss_pred --------eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEE-------------EEeccCCceeeeccc
Confidence 34444444433321 1111112444446677766554222 222222322322
Q ss_pred EEeCCceEEEEeCCCCEEEEeCCC
Q psy1173 428 IACGNCVSFAIDSEGVLYGWGMGN 451 (498)
Q Consensus 428 i~~g~~~~~~lt~~g~v~~wG~n~ 451 (498)
=..|.=|++=.+.+|++|+-|+.+
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCC
Confidence 235666788888899999998855
No 51
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=44.33 E-value=47 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=30.6
Q ss_pred ecEEecccCCeEEEecc-CCeEEEEecCCcEEEEecCCCCccc
Q psy1173 164 TPLKLESVSGIVKIASG-ADHFVMLTSRGNLLTAGCPEQGQLG 205 (498)
Q Consensus 164 ~p~~v~~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~gqlg 205 (498)
.|..+.....-..|+|. ....++|+.||.+|.-+--+.|++-
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 56677777778999999 8889999999999998865566653
No 52
>PHA03098 kelch-like protein; Provisional
Probab=41.65 E-value=2.2e+02 Score=29.52 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=11.0
Q ss_pred ccccCCeEEEEecCC
Q psy1173 32 CKTGGGVVLTCGQGD 46 (498)
Q Consensus 32 ~~~~~g~v~~wG~n~ 46 (498)
+..-+++||++|...
T Consensus 338 ~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 338 VTVFNNRIYVIGGIY 352 (534)
T ss_pred EEEECCEEEEEeCCC
Confidence 344689999999644
No 53
>KOG2280|consensus
Probab=40.40 E-value=3.9e+02 Score=28.66 Aligned_cols=144 Identities=19% Similarity=0.089 Sum_probs=70.4
Q ss_pred ccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCC
Q psy1173 30 LKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDS 109 (498)
Q Consensus 30 ~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~ 109 (498)
.+++..+|.++++|.- |.-.+....-.+. ...+|+.+..-.+-.+++|.+|+++.--.+..--+-..
T Consensus 97 LI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~---~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~----- 163 (829)
T KOG2280|consen 97 LICVQKDGTVHVYGLL-----GEFIESNSVGFES---QMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKM----- 163 (829)
T ss_pred EEEEeccceEEEeecc-----hhhhccccccccc---ccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhC-----
Confidence 4788999999998852 2111101111111 12457777777788899999999997654332111110
Q ss_pred cccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc--CCeEEE
Q psy1173 110 EFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG--ADHFVM 186 (498)
Q Consensus 110 ~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g--~~~~~~ 186 (498)
...|-.........-+.-++..+.+|.-+-.|.--+ .........+..+ .....+.+|+.. ..|.++
T Consensus 164 ~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~----------~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 164 PDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHI----------CQVEESRVQLHALSWPNSSVVKISVSPNRRFLAL 233 (829)
T ss_pred CCCCCccCCCcceeEecCCCcceeEEeechhhhhcc----------cceecccccccccCCCCceEEEEEEcCCcceEEE
Confidence 011111111122222333333444444331211111 0001111122222 224677777766 447778
Q ss_pred EecCCcEEEE
Q psy1173 187 LTSRGNLLTA 196 (498)
Q Consensus 187 l~~~g~v~~~ 196 (498)
.++.|++|.-
T Consensus 234 yt~~G~i~~v 243 (829)
T KOG2280|consen 234 YTETGKIWVV 243 (829)
T ss_pred EecCCcEEEE
Confidence 8999999875
No 54
>KOG0646|consensus
Probab=39.17 E-value=4.1e+02 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=17.4
Q ss_pred CCeEEEeccCC--eEEEEecCCcEEEEecC
Q psy1173 172 SGIVKIASGAD--HFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 172 ~~i~~i~~g~~--~~~~l~~~g~v~~~G~n 199 (498)
.++..+++... +.++-+..|.+|.|=-+
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEec
Confidence 34566665554 33344589999999543
No 55
>KOG0289|consensus
Probab=38.60 E-value=2.6e+02 Score=27.71 Aligned_cols=65 Identities=15% Similarity=0.372 Sum_probs=43.0
Q ss_pred CceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCC--CCCcEEEEEe
Q psy1173 353 NCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSL--QDKTITSIAC 430 (498)
Q Consensus 353 ~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~--~~~~i~~i~~ 430 (498)
.++++++..||-||+-|. .++.+..|-- ..+..+..+ ...+|+.|+.
T Consensus 349 ~~ts~~fHpDgLifgtgt----------------~d~~vkiwdl---------------ks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGT----------------PDGVVKIWDL---------------KSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred eeEEeeEcCCceEEeccC----------------CCceEEEEEc---------------CCccccccCCCCCCceeEEEe
Confidence 478899999999998884 4555555532 222222222 2346899998
Q ss_pred CCceEEEE--eCCCCEEEEe
Q psy1173 431 GNCVSFAI--DSEGVLYGWG 448 (498)
Q Consensus 431 g~~~~~~l--t~~g~v~~wG 448 (498)
+.+-.++. .+|+.|..|-
T Consensus 398 sENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWD 417 (506)
T ss_pred ccCceEEEEEecCCeEEEEE
Confidence 88777765 4467799995
No 56
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.38 E-value=68 Score=23.39 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=28.2
Q ss_pred cccceeeeCCCceeEEeec-CCeEEEEEcCCcEEEeCC
Q psy1173 110 EFIPQTVNLPKKAVQISAG-DSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 110 ~~~p~~~~~~~~i~~i~~g-~~~~~~L~~~G~vy~~G~ 146 (498)
...|-.+.....=..|+|. ....++|++||.||.-+-
T Consensus 6 ~t~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai 43 (81)
T PF03785_consen 6 VTHPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAI 43 (81)
T ss_dssp EE--SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE
T ss_pred EcccccccccccEEEEEecCCCcEEEEecCCEEEEEEE
Confidence 4567777777788899999 999999999999998775
No 57
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.38 E-value=1.2e+02 Score=29.66 Aligned_cols=60 Identities=28% Similarity=0.327 Sum_probs=43.4
Q ss_pred EEEEecCce---EEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeC
Q psy1173 72 VEVVVGGMH---TVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWG 145 (498)
Q Consensus 72 ~~i~~g~~~---~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G 145 (498)
..+.++..+ .+++..+|++..|-.+..-.+ + .....+.+|..-....+|++..|+||++.
T Consensus 163 ~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l-----------~---~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 163 VKVKEGDNHRDGVLGIGRDGKINYWDGNVLKAL-----------K---QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEeecCCCcceEEEEEeecCcEeeecCCeeeEc-----------c---CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 334666665 667778899988875433211 1 13557899999999999999999999886
No 58
>KOG1274|consensus
Probab=35.92 E-value=6.3e+02 Score=27.77 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred CcCcccccccCC-eEEEEecCCCCCCCCCCCCccccceeeec-CCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCC
Q psy1173 26 AVPTLKCKTGGG-VVLTCGQGDTGQLGLGPDVMERKTFALVE-DLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGR 103 (498)
Q Consensus 26 ~~~~~~~~~~~g-~v~~wG~n~~gqlg~g~~~~~~~~p~~v~-~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~ 103 (498)
.....++++.+| -++++|++..=+.=. ...+...|..+. ....|..|++-..|.+.-++++.|..+-....
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~--~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~----- 86 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWK--TNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG----- 86 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEee--cCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC-----
Confidence 345567788777 567777764211111 112224566555 67789999999999998889987655432211
Q ss_pred cCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEec--cC
Q psy1173 104 EAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS--GA 181 (498)
Q Consensus 104 ~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~--g~ 181 (498)
.....=.++.++.+.+.+..+....++=.+|=.|-+.-. .+...... ......+|..+.. -.
T Consensus 87 ----~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~----------~D~s~~~~--lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 87 ----EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL----------DDSSQEKV--LRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ----CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec----------cccchhee--ecccCCceeeeeEcCCC
Confidence 111122222233344444333333333333322222211 00000111 1122344555554 44
Q ss_pred CeEEEEecCCcEEEEec
Q psy1173 182 DHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 182 ~~~~~l~~~g~v~~~G~ 198 (498)
++.+..+-+|+|++|--
T Consensus 151 ~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDL 167 (933)
T ss_pred CEEEEEecCceEEEEEc
Confidence 56667788999999954
No 59
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=35.18 E-value=2.4e+02 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.7
Q ss_pred cCCeEEEEecCCCC
Q psy1173 35 GGGVVLTCGQGDTG 48 (498)
Q Consensus 35 ~~g~v~~wG~n~~g 48 (498)
-++.||+.|-.+.-
T Consensus 12 ~~~~l~v~GG~~~~ 25 (323)
T TIGR03548 12 IGDYILVAGGCNFP 25 (323)
T ss_pred ECCEEEEeeccCCC
Confidence 56789999987554
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=35.13 E-value=3.2e+02 Score=24.17 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=62.8
Q ss_pred cccccCCeEEEEecCCCCCCCCCCCCccccceeee-cCCCCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCC
Q psy1173 31 KCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALV-EDLDNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEG 107 (498)
Q Consensus 31 ~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v-~~~~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~ 107 (498)
+....+|.++.|-..... ....+ .....+..+..-.. +.++...+|.|+.|-.....
T Consensus 25 ~~~~~~g~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-------- 84 (289)
T cd00200 25 ATGSGDGTIKVWDLETGE------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------- 84 (289)
T ss_pred EEeecCcEEEEEEeeCCC------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc--------
Confidence 334457888888654221 11111 11123434444333 44455568888888754321
Q ss_pred CCcccceeee-CCCceeEEeecCC-eEEEEEc-CCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccC-C
Q psy1173 108 DSEFIPQTVN-LPKKAVQISAGDS-HSVALLE-DGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGA-D 182 (498)
Q Consensus 108 ~~~~~p~~~~-~~~~i~~i~~g~~-~~~~L~~-~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~-~ 182 (498)
....+. ....+..+..... ..++... +|.++.|-. ... .....+ .....+..+.... .
T Consensus 85 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-----------~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 85 ----CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV--ETG-----------KCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ----ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC--CCc-----------EEEEEeccCCCcEEEEEEcCcC
Confidence 111111 2335666666554 3333344 899999965 100 000111 1223455555544 2
Q ss_pred eEEEEec-CCcEEEEec
Q psy1173 183 HFVMLTS-RGNLLTAGC 198 (498)
Q Consensus 183 ~~~~l~~-~g~v~~~G~ 198 (498)
..++... ++.|+.|-.
T Consensus 148 ~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 148 TFVASSSQDGTIKLWDL 164 (289)
T ss_pred CEEEEEcCCCcEEEEEc
Confidence 3333333 888888843
No 61
>PLN02193 nitrile-specifier protein
Probab=32.07 E-value=5.6e+02 Score=26.06 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=11.8
Q ss_pred ceEEEEecCCcEEEeeCC
Q psy1173 79 MHTVCLTEDGKVYTWGCN 96 (498)
Q Consensus 79 ~~~~~l~~~g~l~~wG~n 96 (498)
.|++++ .+++||++|-.
T Consensus 271 ~h~~~~-~~~~iYv~GG~ 287 (470)
T PLN02193 271 FHSMAA-DEENVYVFGGV 287 (470)
T ss_pred ceEEEE-ECCEEEEECCC
Confidence 355544 57889999953
No 62
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=31.97 E-value=52 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=13.4
Q ss_pred ccCCeEEEEecCCCCCCC
Q psy1173 34 TGGGVVLTCGQGDTGQLG 51 (498)
Q Consensus 34 ~~~g~v~~wG~n~~gqlg 51 (498)
+-+=.+-+||.|..|.+.
T Consensus 15 TfSlslVVWGRnG~g~~~ 32 (33)
T PRK02529 15 TFSIAMVVWGRNGDGSID 32 (33)
T ss_pred heeeEEEEEecCCccccC
Confidence 345578999999887654
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=31.77 E-value=2e+02 Score=28.23 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=46.1
Q ss_pred EEEEecCcce---eEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEe
Q psy1173 293 FTMLASGQHH---SLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWG 369 (498)
Q Consensus 293 i~~i~~g~~~---~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG 369 (498)
+..+.++.++ .+++-.+|++.-|..+ ..+.++ .....+.+|..-....+|++..|.+|++.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~---------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGN---------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCC---------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 4446777775 7778889999888632 233333 24567999999999999999999999987
Q ss_pred C
Q psy1173 370 M 370 (498)
Q Consensus 370 ~ 370 (498)
.
T Consensus 226 ~ 226 (373)
T PLN03215 226 S 226 (373)
T ss_pred c
Confidence 3
No 64
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.56 E-value=5.4e+02 Score=25.67 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCcEEEEec-CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee----CCCceeEEeecCCeEEEEEcCCcEEE
Q psy1173 69 DNVVEVVVG-GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN----LPKKAVQISAGDSHSVALLEDGTVYA 143 (498)
Q Consensus 69 ~~i~~i~~g-~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~----~~~~i~~i~~g~~~~~~L~~~G~vy~ 143 (498)
.+|+.+.-- ..+.++|+++|.++.+- ..|.. ....+..+. ...++-.+..+....++|+.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 577777764 45677889999988874 22322 011222221 11123344556677899999999998
Q ss_pred eCC
Q psy1173 144 WGS 146 (498)
Q Consensus 144 ~G~ 146 (498)
.-.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 854
No 65
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.65 E-value=49 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=11.4
Q ss_pred ceEEEEecCCcEEEeeC
Q psy1173 79 MHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 79 ~~~~~l~~~g~l~~wG~ 95 (498)
.|+++...+++||.+|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 68888888899999993
No 66
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.79 E-value=1.5e+02 Score=27.16 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=37.2
Q ss_pred cCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEE-EEecCceEEEEecCCcEEEeeCCC
Q psy1173 27 VPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVE-VVVGGMHTVCLTEDGKVYTWGCND 97 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~-i~~g~~~~~~l~~~g~l~~wG~n~ 97 (498)
+..+..+..||+|++-|-...--.-.=........+..++.+....+ .....+=.+.|..||+||.++.+.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 44556777999999999765110000000001111222222222222 112333367889999999999764
No 67
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=29.41 E-value=37 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.5
Q ss_pred CCceEEEEeCCCCEEEEeCCCCCC
Q psy1173 431 GNCVSFAIDSEGVLYGWGMGNGYQ 454 (498)
Q Consensus 431 g~~~~~~lt~~g~v~~wG~n~~gq 454 (498)
-++.+-+|..+|+|.+||...+.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 356777889999999999977654
No 68
>KOG1034|consensus
Probab=29.33 E-value=1.2e+02 Score=28.79 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=39.2
Q ss_pred EEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeE--EEeCCCCEEEEeC
Q psy1173 304 LALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSF--AIDSEGVLYGWGM 370 (498)
Q Consensus 304 ~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~--~lt~~G~v~~wG~ 370 (498)
++..+.|+||.|-... .+....++......++.|.+.+...+.++ ++.++|.||.|-+
T Consensus 323 a~gnq~g~v~vwdL~~---------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN---------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC---------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3456789999997422 11223556666667788888888766654 4478899998864
No 69
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.14 E-value=93 Score=17.21 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=13.7
Q ss_pred eeEEEeCCCCEEEEeCCC
Q psy1173 355 VSFAIDSEGVLYGWGMGN 372 (498)
Q Consensus 355 ~~~~lt~~G~v~~wG~n~ 372 (498)
+.++++.+|+||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567888899999877543
No 70
>KOG2280|consensus
Probab=27.38 E-value=8.1e+02 Score=26.45 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=68.6
Q ss_pred eeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCC
Q psy1173 302 HSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 381 (498)
Q Consensus 302 ~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~ 381 (498)
.-++++++|.++.+|.- | ...+.. .........+|...-.-....++|+.+|+++..-....--+-.-++
T Consensus 96 eLI~v~k~g~v~Vy~~~-----g--e~ie~~---svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~d 165 (829)
T KOG2280|consen 96 ELICVQKDGTVHVYGLL-----G--EFIESN---SVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPD 165 (829)
T ss_pred eEEEEeccceEEEeecc-----h--hhhccc---ccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCC
Confidence 35567999999998752 2 111110 1111122345666666668889999999999876554422211111
Q ss_pred --CcccC-CCCcEEEecccccccccccC--------CCCCCCCCeecCCCCCCcEEEEEeC--CceEEEEeCCCCEEEEe
Q psy1173 382 --DDILN-SEGKIYAFGRHDYGRLGLKN--------VSEPVTEPTPIPSLQDKTITSIACG--NCVSFAIDSEGVLYGWG 448 (498)
Q Consensus 382 --~~~~~-~~~~~~~~G~n~~g~lg~~~--------~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~wG 448 (498)
-+.+. +-..+..=+.+.+..|++.. .......+..+..+ +..+.+|+.+ ..|-+..|++|++|.--
T Consensus 166 iP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs 244 (829)
T KOG2280|consen 166 IPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP-NSSVVKISVSPNRRFLALYTETGKIWVVS 244 (829)
T ss_pred CCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC-CceEEEEEEcCCcceEEEEecCCcEEEEe
Confidence 00111 22222222334555555441 01111222222222 3558777776 44555678899988754
No 71
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.65 E-value=9e+02 Score=26.72 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=37.1
Q ss_pred cCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEecc-----CceeEEEeCCCCEEEEe
Q psy1173 298 SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG-----NCVSFAIDSEGVLYGWG 369 (498)
Q Consensus 298 ~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~G~v~~wG 369 (498)
...++.+++|+.|++|..-....-..+....... ....++...+++|+.+.+- ....+++|.+|.+--.-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~--i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP--IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC--HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 3456688899999999984322111111000000 1112344456778777662 12466778887665443
No 72
>KOG1034|consensus
Probab=25.50 E-value=1.8e+02 Score=27.69 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCCeecCCCCCCcEEEEEeCCceEEE--EeCCCCEEEEeC
Q psy1173 412 TEPTPIPSLQDKTITSIACGNCVSFA--IDSEGVLYGWGM 449 (498)
Q Consensus 412 ~~p~~v~~~~~~~i~~i~~g~~~~~~--lt~~g~v~~wG~ 449 (498)
..++......+..|.+.+....-+++ +.+++-||.|-+
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 44555555667778888887766665 477888998854
No 73
>PHA02790 Kelch-like protein; Provisional
Probab=25.15 E-value=2.7e+02 Score=28.48 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=12.1
Q ss_pred eEEEEecCCcEEEeeCC
Q psy1173 80 HTVCLTEDGKVYTWGCN 96 (498)
Q Consensus 80 ~~~~l~~~g~l~~wG~n 96 (498)
+..+..-+|+||+.|..
T Consensus 355 ~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 355 NPAVASINNVIYVIGGH 371 (480)
T ss_pred ccEEEEECCEEEEecCc
Confidence 33445668999999953
No 74
>PHA02790 Kelch-like protein; Provisional
Probab=24.71 E-value=2.6e+02 Score=28.52 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.1
Q ss_pred EEEEEcCCcEEEeCC
Q psy1173 132 SVALLEDGTVYAWGS 146 (498)
Q Consensus 132 ~~~L~~~G~vy~~G~ 146 (498)
..+..-+|+||+.|-
T Consensus 356 ~~~~~~~g~IYviGG 370 (480)
T PHA02790 356 PAVASINNVIYVIGG 370 (480)
T ss_pred cEEEEECCEEEEecC
Confidence 344456899999985
No 75
>KOG2055|consensus
Probab=24.56 E-value=7.3e+02 Score=24.94 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=15.0
Q ss_pred CCeEEEEecCCcEEEEecCC
Q psy1173 181 ADHFVMLTSRGNLLTAGCPE 200 (498)
Q Consensus 181 ~~~~~~l~~~g~v~~~G~n~ 200 (498)
..+.++...+|+||+|--+.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred CcEEEEEcCCceEEEEecCC
Confidence 35677777899999996544
No 76
>KOG0293|consensus
Probab=24.47 E-value=7e+02 Score=24.71 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=41.7
Q ss_pred eeeCCCceeEEeecCCeEEEEE--cCCcEEEeCCcCCCCCccCCCCCCcceecEEeccc----CCeEEEeccCCeEEEE-
Q psy1173 115 TVNLPKKAVQISAGDSHSVALL--EDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESV----SGIVKIASGADHFVML- 187 (498)
Q Consensus 115 ~~~~~~~i~~i~~g~~~~~~L~--~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~----~~i~~i~~g~~~~~~l- 187 (498)
.+....+|.+++.+.+.=++|. .+.++..|-..++ ..+.+.... --|.+-..|.+..++.
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 3445668888888877777665 4678888865111 111111111 1145555566544444
Q ss_pred -ecCCcEEEEec
Q psy1173 188 -TSRGNLLTAGC 198 (498)
Q Consensus 188 -~~~g~v~~~G~ 198 (498)
++|++||.|-.
T Consensus 458 GSED~kvyIWhr 469 (519)
T KOG0293|consen 458 GSEDSKVYIWHR 469 (519)
T ss_pred cCCCceEEEEEc
Confidence 68999999953
No 77
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=23.80 E-value=3.9e+02 Score=21.48 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=35.2
Q ss_pred cEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEE
Q psy1173 292 KFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYG 367 (498)
Q Consensus 292 ~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~ 367 (498)
+.+++-|-....+.+..||.|-+--.. .... .-.++.......|.=-.+-....+++++.|.+|+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~----------~~~~-~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDE----------SSSF-TILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCC----------CCcc-eEEEEEeccCCEEEEEEcccceEEEECCCCCEEE
Confidence 355666665466777788888653211 1111 1111111121223333445677899999999997
No 78
>PF03984 DUF346: Repeat of unknown function (DUF346) ; InterPro: IPR007132 This repeat was found as seven tandem copies in one protein. It is predicted to be composed of beta-strands. Thus it is likely that it forms a beta-propeller structure. It is found in association with BNR repeats, which also form a beta-propeller.
Probab=22.40 E-value=1.1e+02 Score=19.00 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=16.1
Q ss_pred cCceEEEEecCCcEEEeeCCC
Q psy1173 77 GGMHTVCLTEDGKVYTWGCND 97 (498)
Q Consensus 77 g~~~~~~l~~~g~l~~wG~n~ 97 (498)
+..|.++...||+|+-|=.+.
T Consensus 1 ~QqHVF~r~~dg~L~H~ww~~ 21 (40)
T PF03984_consen 1 GQQHVFARGTDGTLHHWWWDS 21 (40)
T ss_pred CcceEEEECCCCCEEEEEECC
Confidence 467999999999998664443
No 79
>KOG0278|consensus
Probab=22.08 E-value=6.2e+02 Score=23.24 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=45.2
Q ss_pred ccceeee-CCCceeE-EeecCCeEEEE-EcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCC-eEEE
Q psy1173 111 FIPQTVN-LPKKAVQ-ISAGDSHSVAL-LEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGAD-HFVM 186 (498)
Q Consensus 111 ~~p~~~~-~~~~i~~-i~~g~~~~~~L-~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~-~~~~ 186 (498)
..|+.+. -+..|+. +-|-.+++++- +.++.|..|-... . ..-..+....++.++-...+ +.+.
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT---------g----t~v~sL~~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT---------G----TEVQSLEFNSPVTSLEVSQDGRILT 200 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc---------C----cEEEEEecCCCCcceeeccCCCEEE
Confidence 3444444 3445665 45666776665 5679999997511 0 11122344555655554433 4455
Q ss_pred EecCCcEEEEecCCCCcc
Q psy1173 187 LTSRGNLLTAGCPEQGQL 204 (498)
Q Consensus 187 l~~~g~v~~~G~n~~gql 204 (498)
+...+.|..|-.+.++-|
T Consensus 201 ia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EecCceeEEeccccccce
Confidence 555566777876666555
No 80
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.06 E-value=6.1e+02 Score=22.74 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCce--EEEEecCCcEEEeeCCCCCCCCC---cC
Q psy1173 31 KCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMH--TVCLTEDGKVYTWGCNDEGALGR---EA 105 (498)
Q Consensus 31 ~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~--~~~l~~~g~l~~wG~n~~gqlg~---~~ 105 (498)
++++.+|++|+--......-.... -.-..+....++..+..+... .+++..+|+.+.+-.-..+++-. ..
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~-----g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDP-----GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGS-----EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEecCCCccccccc-----cceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Q ss_pred CCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEecc--CCe
Q psy1173 106 EGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASG--ADH 183 (498)
Q Consensus 106 ~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g--~~~ 183 (498)
.......++.+.....-. |.-..++++.+|+||+... ......-.........-..++ .+.+..++.| ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~--~~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 166 DGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADW--GGGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDGK 238 (246)
T ss_dssp TTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEE--TTTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTSS
T ss_pred cccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEc--CCCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCCC
Q ss_pred EEEEec
Q psy1173 184 FVMLTS 189 (498)
Q Consensus 184 ~~~l~~ 189 (498)
.+++|.
T Consensus 239 ~L~vTt 244 (246)
T PF08450_consen 239 TLYVTT 244 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
No 81
>KOG1240|consensus
Probab=20.90 E-value=1.3e+03 Score=26.64 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=46.0
Q ss_pred CceeEEeecCCe-EEEEE--cCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEe-ccCCeEEEE-ecCCcEE
Q psy1173 120 KKAVQISAGDSH-SVALL--EDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIA-SGADHFVML-TSRGNLL 194 (498)
Q Consensus 120 ~~i~~i~~g~~~-~~~L~--~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~-~g~~~~~~l-~~~g~v~ 194 (498)
..+.+++....| +++++ .||.|.+|-. .-..|.... ....-+-.....++..+. |++.+.+|+ ++||.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~----~k~~~~~~s-~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNL----RKLEGEGGS-ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeee----hhhhcCcce-eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 456688888888 67765 6899999964 333333211 111111122455555555 555555444 7889988
Q ss_pred EEecCCC
Q psy1173 195 TAGCPEQ 201 (498)
Q Consensus 195 ~~G~n~~ 201 (498)
+.+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8876654
Done!