Query psy1173
Match_columns 498
No_of_seqs 202 out of 2311
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:25:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mvd_K Regulator of chromosome 100.0 2E-73 6.9E-78 569.3 44.6 401 11-497 17-420 (423)
2 1a12_A RCC1, regulator of chro 100.0 1.2E-72 4.1E-77 561.4 43.5 391 22-497 12-411 (413)
3 3kci_A Probable E3 ubiquitin-p 100.0 7.9E-71 2.7E-75 543.2 35.7 371 25-496 8-388 (389)
4 3of7_A Regulator of chromosome 100.0 3.8E-70 1.3E-74 551.5 40.3 403 12-495 4-450 (473)
5 4d9s_A UVB-resistance protein 100.0 9.4E-70 3.2E-74 538.3 40.6 367 10-475 8-381 (406)
6 4d9s_A UVB-resistance protein 100.0 7.8E-63 2.7E-67 488.7 40.8 332 66-497 13-349 (406)
7 1a12_A RCC1, regulator of chro 100.0 9.7E-60 3.3E-64 468.4 34.3 330 17-444 58-412 (413)
8 3kci_A Probable E3 ubiquitin-p 100.0 4E-60 1.4E-64 466.8 31.0 326 18-442 53-388 (389)
9 3mvd_K Regulator of chromosome 100.0 1.8E-58 6.2E-63 461.2 34.8 330 66-497 21-366 (423)
10 3of7_A Regulator of chromosome 100.0 1.4E-56 4.6E-61 452.5 34.8 329 17-440 66-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 7.5E-53 2.6E-57 394.4 30.6 272 38-497 3-274 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.1E-47 3.7E-52 359.4 28.8 254 16-366 22-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.2 0.2 6.8E-06 48.8 29.4 229 69-370 134-363 (435)
14 1p22_A F-BOX/WD-repeat protein 96.9 0.39 1.3E-05 46.7 28.9 240 68-371 173-413 (435)
15 1k3i_A Galactose oxidase precu 96.2 1.5 5E-05 45.4 27.9 23 432-454 511-534 (656)
16 2ovr_B FBW7, F-BOX/WD repeat p 96.1 1.2 4E-05 43.3 38.0 266 71-451 122-391 (445)
17 1gxr_A ESG1, transducin-like e 95.4 1.5 5.3E-05 40.1 32.5 154 27-199 11-171 (337)
18 4gbf_A Phikz131; 7-bladed beta 95.3 0.031 1E-06 48.6 6.1 125 5-146 227-374 (400)
19 2ovr_B FBW7, F-BOX/WD repeat p 95.2 2.5 8.6E-05 40.9 37.1 228 69-371 160-390 (445)
20 4gbf_A Phikz131; 7-bladed beta 95.1 0.034 1.2E-06 48.3 5.9 69 291-373 309-377 (400)
21 1k3i_A Galactose oxidase precu 94.9 1 3.6E-05 46.5 17.9 71 301-374 458-533 (656)
22 2zwa_A Leucine carboxyl methyl 92.2 3.5 0.00012 42.9 16.2 19 299-317 597-615 (695)
23 3k26_A Polycomb protein EED; W 90.4 11 0.00036 34.7 21.8 110 69-199 19-146 (366)
24 4aez_A CDC20, WD repeat-contai 89.9 13 0.00045 35.1 26.2 104 71-199 96-204 (401)
25 3odt_A Protein DOA1; ubiquitin 88.5 13 0.00045 33.1 31.8 108 69-197 19-130 (313)
26 2zwa_A Leucine carboxyl methyl 85.7 21 0.00072 36.9 16.3 20 432-451 598-617 (695)
27 4g56_B MGC81050 protein; prote 84.9 25 0.00084 32.7 27.7 71 119-197 42-121 (357)
28 1pgu_A Actin interacting prote 84.3 35 0.0012 34.0 27.4 277 26-372 19-328 (615)
29 3sfz_A APAF-1, apoptotic pepti 83.4 60 0.0021 35.9 24.1 66 69-146 1004-1072(1249)
30 4aez_A CDC20, WD repeat-contai 82.7 32 0.0011 32.3 28.3 140 28-199 104-247 (401)
31 3odt_A Protein DOA1; ubiquitin 82.5 26 0.00089 31.1 28.9 227 69-371 60-295 (313)
32 1sq9_A Antiviral protein SKI8; 81.0 35 0.0012 31.6 28.5 117 69-199 17-156 (397)
33 4a11_B DNA excision repair pro 80.2 37 0.0013 31.4 32.2 259 69-370 44-321 (408)
34 3jrp_A Fusion protein of prote 79.4 38 0.0013 31.0 25.9 109 69-199 12-133 (379)
35 3v7d_B Cell division control p 76.1 56 0.0019 31.2 36.2 240 71-371 125-380 (464)
36 3jro_A Fusion protein of prote 75.2 82 0.0028 32.7 25.0 108 70-199 11-131 (753)
37 1xip_A Nucleoporin NUP159; bet 72.7 33 0.0011 32.6 11.5 73 111-197 79-152 (388)
38 1rwi_B Serine/threonine-protei 72.5 47 0.0016 28.7 14.9 15 27-41 25-39 (270)
39 1xip_A Nucleoporin NUP159; bet 72.4 32 0.0011 32.7 11.3 107 27-146 39-153 (388)
40 2aq5_A Coronin-1A; WD40 repeat 70.9 68 0.0023 29.9 22.5 113 73-199 39-162 (402)
41 3vl1_A 26S proteasome regulato 67.5 80 0.0027 29.4 29.9 97 77-199 108-211 (420)
42 3no2_A Uncharacterized protein 65.1 74 0.0025 28.1 23.4 25 432-457 243-267 (276)
43 3mmy_A MRNA export factor; mRN 65.0 80 0.0027 28.5 25.6 191 118-372 38-247 (368)
44 2vpj_A Kelch-like protein 12; 62.6 84 0.0029 27.9 14.7 17 243-259 199-215 (301)
45 1yfq_A Cell cycle arrest prote 62.4 87 0.003 28.0 26.2 201 120-372 12-225 (342)
46 4gga_A P55CDC, cell division c 62.1 1E+02 0.0036 28.9 26.2 95 78-197 115-215 (420)
47 3mkq_A Coatomer beta'-subunit; 60.7 1.6E+02 0.0054 30.5 28.7 228 69-371 14-258 (814)
48 2xn4_A Kelch-like protein 2; s 60.5 28 0.00096 31.2 8.3 17 243-259 197-213 (302)
49 3v7d_B Cell division control p 60.4 1.2E+02 0.004 28.8 36.5 198 68-319 162-381 (464)
50 1pgu_A Actin interacting prote 58.8 1.4E+02 0.0049 29.3 35.2 103 69-199 254-365 (615)
51 3mkq_A Coatomer beta'-subunit; 58.5 1.7E+02 0.0059 30.2 36.5 107 69-198 56-170 (814)
52 3i2n_A WD repeat-containing pr 58.1 1E+02 0.0036 27.6 23.5 70 118-199 17-98 (357)
53 3k26_A Polycomb protein EED; W 54.5 1.2E+02 0.0041 27.2 29.0 137 30-199 37-191 (366)
54 2pm9_A Protein WEB1, protein t 54.2 1.4E+02 0.0046 27.6 25.1 72 119-199 67-144 (416)
55 2vpj_A Kelch-like protein 12; 52.1 85 0.0029 27.8 10.0 14 33-46 59-72 (301)
56 1r5m_A SIR4-interacting protei 51.1 1.5E+02 0.0051 27.2 30.3 65 70-146 110-178 (425)
57 4asc_A Kelch repeat and BTB do 51.1 87 0.003 28.1 10.0 18 27-44 36-53 (315)
58 4gga_A P55CDC, cell division c 50.6 1.6E+02 0.0055 27.5 27.0 139 28-198 116-259 (420)
59 1gxr_A ESG1, transducin-like e 49.5 1.4E+02 0.0047 26.4 34.5 114 76-198 9-126 (337)
60 3i2n_A WD repeat-containing pr 49.1 1.5E+02 0.005 26.5 27.2 115 67-198 64-197 (357)
61 1r5m_A SIR4-interacting protei 47.5 1.7E+02 0.0058 26.9 30.3 65 121-199 110-179 (425)
62 3p6j_A De novo designed beta-t 47.0 1E+02 0.0036 24.3 11.8 107 231-367 28-138 (142)
63 2qc5_A Streptogramin B lactona 44.4 1.6E+02 0.0053 25.5 22.2 18 27-44 21-38 (300)
64 4gqb_B Methylosome protein 50; 44.3 1.9E+02 0.0064 26.4 28.2 29 171-199 82-111 (344)
65 4g56_B MGC81050 protein; prote 43.0 2E+02 0.0067 26.3 31.9 73 118-198 93-168 (357)
66 2xn4_A Kelch-like protein 2; s 42.5 1.8E+02 0.0061 25.7 12.8 16 301-317 197-212 (302)
67 3sfz_A APAF-1, apoptotic pepti 41.6 3.9E+02 0.013 29.3 34.6 27 69-95 883-911 (1249)
68 1q7f_A NHL, brain tumor CG1071 39.5 1.9E+02 0.0064 25.0 19.9 16 355-370 210-225 (286)
69 1sq9_A Antiviral protein SKI8; 38.0 2.3E+02 0.008 25.7 27.1 118 16-146 15-155 (397)
70 1zgk_A Kelch-like ECH-associat 37.2 73 0.0025 28.5 7.0 16 79-95 161-176 (308)
71 4ery_A WD repeat-containing pr 37.0 2.1E+02 0.0073 25.0 30.5 106 69-198 24-136 (312)
72 1rwi_B Serine/threonine-protei 36.7 2E+02 0.0067 24.5 18.6 17 354-370 236-252 (270)
73 1suu_A DNA gyrase subunit A; t 36.0 2.5E+02 0.0084 25.4 22.8 220 181-460 8-240 (312)
74 3jrp_A Fusion protein of prote 35.8 2.4E+02 0.0083 25.2 25.1 111 68-198 55-189 (379)
75 3ii7_A Kelch-like protein 7; p 35.7 1.4E+02 0.0048 26.5 8.7 14 33-46 52-65 (306)
76 3no0_A DNA gyrase subunit A; D 35.1 2.4E+02 0.0081 25.0 21.2 216 67-324 22-251 (276)
77 3zwl_B Eukaryotic translation 34.9 2.4E+02 0.0084 25.0 26.5 67 68-146 74-149 (369)
78 4a11_B DNA excision repair pro 34.1 2.7E+02 0.0092 25.3 33.4 250 68-372 99-365 (408)
79 3gre_A Serine/threonine-protei 33.6 2.9E+02 0.01 25.6 22.0 72 69-146 64-140 (437)
80 4a2l_A BT_4663, two-component 32.0 4.5E+02 0.015 27.2 19.3 17 434-450 634-650 (795)
81 1vyh_C Platelet-activating fac 31.9 3.1E+02 0.011 25.4 27.3 104 69-198 109-221 (410)
82 4asc_A Kelch repeat and BTB do 31.1 2.8E+02 0.0095 24.6 13.5 18 78-95 36-53 (315)
83 3zwl_B Eukaryotic translation 30.5 2.9E+02 0.0098 24.5 28.7 67 68-146 32-103 (369)
84 1k8k_C P40, ARP2/3 complex 41 30.3 3E+02 0.01 24.6 26.6 68 119-197 8-80 (372)
85 3q7x_A De novo designed beta-t 27.9 2.1E+02 0.0072 22.1 9.5 57 299-367 56-113 (132)
86 3no0_A DNA gyrase subunit A; D 27.5 3.2E+02 0.011 24.1 23.1 236 131-457 3-252 (276)
87 3uc1_A DNA gyrase subunit A; D 27.5 3.5E+02 0.012 24.6 23.8 249 72-351 47-306 (327)
88 2qc5_A Streptogramin B lactona 27.5 2.9E+02 0.01 23.6 23.3 17 433-449 274-290 (300)
89 3jro_A Fusion protein of prote 27.3 5.2E+02 0.018 26.5 23.5 111 68-198 53-187 (753)
90 2uvk_A YJHT; unknown function, 26.6 1.1E+02 0.0039 27.8 6.6 18 432-450 110-127 (357)
91 3f3f_A Nucleoporin SEH1; struc 25.9 3.3E+02 0.011 23.7 23.4 120 172-318 12-142 (351)
92 2z2n_A Virginiamycin B lyase; 24.6 3.3E+02 0.011 23.3 19.7 16 354-369 227-242 (299)
93 1k8k_C P40, ARP2/3 complex 41 24.2 3.8E+02 0.013 23.8 27.8 109 69-198 9-125 (372)
94 2pm9_A Protein WEB1, protein t 23.9 4.1E+02 0.014 24.1 25.8 121 68-199 67-196 (416)
95 1q7f_A NHL, brain tumor CG1071 23.2 3.5E+02 0.012 23.1 13.8 13 184-196 255-267 (286)
96 3p6j_A De novo designed beta-t 21.8 2.9E+02 0.01 21.6 15.1 116 59-196 20-139 (142)
97 2woz_A Kelch repeat and BTB do 21.6 4.2E+02 0.014 23.4 12.4 17 243-259 151-167 (318)
98 2aq5_A Coronin-1A; WD40 repeat 21.3 4.7E+02 0.016 23.8 23.9 154 177-371 40-206 (402)
99 1zvt_A Topoisomerase IV subuni 21.2 4.1E+02 0.014 23.1 12.8 69 297-371 41-113 (256)
100 3no2_A Uncharacterized protein 20.8 4.2E+02 0.014 23.0 19.3 28 290-317 87-116 (276)
101 3fvz_A Peptidyl-glycine alpha- 20.6 4.5E+02 0.015 23.3 21.3 22 125-146 21-42 (329)
102 4ggc_A P55CDC, cell division c 20.4 4.1E+02 0.014 22.8 29.3 139 29-198 37-179 (318)
103 1zvu_A Topoisomerase IV subuni 20.2 7.1E+02 0.024 25.5 14.0 123 297-457 511-639 (716)
No 1
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2e-73 Score=569.34 Aligned_cols=401 Identities=40% Similarity=0.653 Sum_probs=341.2
Q ss_pred hhccCCCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcE
Q psy1173 11 KQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKV 90 (498)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l 90 (498)
..+..|..++..++++..|+++++++|+||+||.|.+||||.+.+......|.+++.+.+|++|+||..|+++|+++|+|
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v 96 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCE
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeE
Confidence 34567778889999999999999999999999999999999997667788999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCcCCCC-CcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEec
Q psy1173 91 YTWGCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLE 169 (498)
Q Consensus 91 ~~wG~n~~gqlg~~~~~~-~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~ 169 (498)
|+||.|.+||||.+.... ....|.++..+.+|++|+||.+|+++|+++|+||+||.++|.++|||.........|+++.
T Consensus 97 ~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~ 176 (423)
T 3mvd_K 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM 176 (423)
T ss_dssp EEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS
T ss_pred EEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec
Confidence 999999999999976543 4678999988899999999999999999999999999877899999999888888999998
Q ss_pred ccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEecc
Q psy1173 170 SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISS 249 (498)
Q Consensus 170 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~ 249 (498)
...+|++|+||.+|+++|+++|+||+||.|.++|||.+...........
T Consensus 177 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~------------------------------- 225 (423)
T 3mvd_K 177 EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR------------------------------- 225 (423)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT-------------------------------
T ss_pred CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc-------------------------------
Confidence 8899999999999999999999999999999999998655332111000
Q ss_pred CCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEE-ecCCcEEEEecCCCCcccccCC
Q psy1173 250 KGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLAL-NSEGKIYAFGRHDYGRLGLKNV 328 (498)
Q Consensus 250 ~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~G~v~~~G~n~~gqlg~~~~ 328 (498)
+ ......|.++......+|++|+||..|++++ +++|+||+||.|.+||||.+..
T Consensus 226 ---------------~----------~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 226 ---------------G----------KRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp ---------------T----------TTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred ---------------c----------cccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 0 1111577777777777899999999999999 6999999999999999998543
Q ss_pred -CCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCC
Q psy1173 329 -SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNV 407 (498)
Q Consensus 329 -~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~ 407 (498)
......|.++. ..+|++|+||.+|+++|+++|+||+||.|.++|||.+....
T Consensus 281 ~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~------------------------ 333 (423)
T 3mvd_K 281 GKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD------------------------ 333 (423)
T ss_dssp TCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCS------------------------
T ss_pred CCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccc------------------------
Confidence 33344566555 35799999999999999999999999999999998876432
Q ss_pred CCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCc
Q psy1173 408 SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQ 487 (498)
Q Consensus 408 ~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~ 487 (498)
....|.+++.+.+ +|++|+||.+|+++|+++|+||+||+|.+||||+|+.++...|++|+.+.+.+.+|.+|+||.+
T Consensus 334 --~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ 410 (423)
T 3mvd_K 334 --VVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQ 410 (423)
T ss_dssp --CEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSS
T ss_pred --cccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCC
Confidence 2256888887776 7999999999999999999999999999999999999999999999976678899999999999
Q ss_pred eEEEEecCCC
Q psy1173 488 HSVILAKPKP 497 (498)
Q Consensus 488 ~s~~l~~~~~ 497 (498)
||++|+++++
T Consensus 411 ht~~l~~~~k 420 (423)
T 3mvd_K 411 HAIFLVKADK 420 (423)
T ss_dssp EEEEEEECC-
T ss_pred cEEEEEcccc
Confidence 9999999875
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.2e-72 Score=561.37 Aligned_cols=391 Identities=43% Similarity=0.744 Sum_probs=334.2
Q ss_pred EeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCC
Q psy1173 22 VTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGAL 101 (498)
Q Consensus 22 ~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gql 101 (498)
....+..|+++++.+|+||+||.|.+||||++.+......|.+++...+|++|+||..|+++|+++|+||+||.|.+|||
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqL 91 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGAL 91 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCC
Confidence 34455789999999999999999999999999765557889999888999999999999999999999999999999999
Q ss_pred CCcCC-CCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcce-ecEEecccCCeEEEec
Q psy1173 102 GREAE-GDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQK-TPLKLESVSGIVKIAS 179 (498)
Q Consensus 102 g~~~~-~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~-~p~~v~~~~~i~~i~~ 179 (498)
|.+.. ......|.++.++.+|++|+||.+|+++|+++|+||+||.++|.++|||........ .|.++....+|++|+|
T Consensus 92 G~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~ 171 (413)
T 1a12_A 92 GRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS 171 (413)
T ss_dssp CSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE
T ss_pred CCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe
Confidence 99665 345678999888889999999999999999999999999866789999988766544 6999988889999999
Q ss_pred cCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEEecc
Q psy1173 180 GADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLN 259 (498)
Q Consensus 180 g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n 259 (498)
|.+|+++|+++|+||+||.|.++|||..............
T Consensus 172 G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~---------------------------------------- 211 (413)
T 1a12_A 172 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG---------------------------------------- 211 (413)
T ss_dssp CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG----------------------------------------
T ss_pred cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc----------------------------------------
Confidence 9999999999999999999999999986543221100000
Q ss_pred CCccccccchhccccCCceeecceeeccc-----CCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccC
Q psy1173 260 NYSQLGEADSEVQKSGNTCFFTPHLIKSL-----SDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTE 334 (498)
Q Consensus 260 ~~gqlg~~~~~~~~~~~~~~~~p~~i~~~-----~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 334 (498)
......|+.+... ...+|++|+||..|+++|+++|+||+||.|.+||||.+..... ..
T Consensus 212 ----------------~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~-~~ 274 (413)
T 1a12_A 212 ----------------LERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESC-FI 274 (413)
T ss_dssp ----------------HHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCE-EE
T ss_pred ----------------ccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcc-cc
Confidence 0001344433322 3457999999999999999999999999999999999876544 47
Q ss_pred CcccCCCCC--CcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCC
Q psy1173 335 PTPIPSLQD--KTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVT 412 (498)
Q Consensus 335 p~~i~~~~~--~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~ 412 (498)
|++++.+.+ .+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....
T Consensus 275 P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~--------------------------~~~~ 328 (413)
T 1a12_A 275 PQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA--------------------------EEKS 328 (413)
T ss_dssp EEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC--------------------------CCEE
T ss_pred cEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC--------------------------cccc
Confidence 888887766 679999999999999999999999999999999887422 1226
Q ss_pred CCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCceEEEE
Q psy1173 413 EPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVIL 492 (498)
Q Consensus 413 ~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l 492 (498)
.|++++.+. +|++|+||.+|+++|+++|+||+||.|.+||||.++.++...|++|+.+.+.+.++.+|+||.+||++|
T Consensus 329 ~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l 406 (413)
T 1a12_A 329 IPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLL 406 (413)
T ss_dssp EEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEE
T ss_pred CCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEE
Confidence 788888776 599999999999999999999999999999999999999999999987556788999999999999999
Q ss_pred ecCCC
Q psy1173 493 AKPKP 497 (498)
Q Consensus 493 ~~~~~ 497 (498)
+++++
T Consensus 407 ~~~g~ 411 (413)
T 1a12_A 407 VKDKE 411 (413)
T ss_dssp EEECS
T ss_pred EecCC
Confidence 99876
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-71 Score=543.22 Aligned_cols=371 Identities=28% Similarity=0.490 Sum_probs=314.5
Q ss_pred cCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecC--CCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCC
Q psy1173 25 EAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVED--LDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALG 102 (498)
Q Consensus 25 ~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~--~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg 102 (498)
....+.++++.+|+||+||.|.+||||.+. ......|++++. ..+|++|+||..|+++|+++|+||+||.|..||||
T Consensus 8 ~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~-~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIE-GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp -------------CEEEEEECTTSTTSSCS-CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred cCcccceeECCCCeEEEeeCCCCccCCCCc-CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 356667899999999999999999999874 456667777753 35799999999999999999999999999999999
Q ss_pred CcCCCCCcccceeeeC----CCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecc--cCCeEE
Q psy1173 103 REAEGDSEFIPQTVNL----PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLES--VSGIVK 176 (498)
Q Consensus 103 ~~~~~~~~~~p~~~~~----~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~--~~~i~~ 176 (498)
.+... ....|..++. ..++++|+||.+|+++|+++|+||+||. |.++|||.+.......|.++.. ..+|++
T Consensus 87 ~g~~~-~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~--n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 87 IGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE--AEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp SSSSC-CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC--CGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCcC-CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC--CCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 97664 3567777762 2355899999999999999999999998 8899999999888889999854 348999
Q ss_pred EeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEE
Q psy1173 177 IASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAF 256 (498)
Q Consensus 177 i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~ 256 (498)
|+||..|+++|+++|+||+||.|.++|||.+...
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~---------------------------------------------- 197 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE---------------------------------------------- 197 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC----------------------------------------------
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc----------------------------------------------
Confidence 9999999999999999999999999999865331
Q ss_pred eccCCccccccchhccccCCceeecceeecccCCCcEEEEecCc--ceeEEEecCCcEEEEecCCCCcccccCCCCCccC
Q psy1173 257 GLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ--HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTE 334 (498)
Q Consensus 257 G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 334 (498)
.. ..|.++..+.+.+|++|+||. .|+++|+++|+||+||.|.+||||.+.... ...
T Consensus 198 --------------------~~-~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~-~~~ 255 (389)
T 3kci_A 198 --------------------DQ-LKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG-CKV 255 (389)
T ss_dssp --------------------CE-EEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCC-EEE
T ss_pred --------------------cc-ccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCC-ccc
Confidence 11 567778888888999999995 899999999999999999999999987544 347
Q ss_pred CcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCC
Q psy1173 335 PTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 414 (498)
Q Consensus 335 p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p 414 (498)
|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+..... ..|
T Consensus 256 p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~---------------------------~~P 308 (389)
T 3kci_A 256 PMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHV---------------------------RRP 308 (389)
T ss_dssp EEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCE---------------------------EEE
T ss_pred cEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccc---------------------------cCC
Confidence 88888888889999999999999999999999999999999998764332 678
Q ss_pred eecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCceEEEEec
Q psy1173 415 TPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAK 494 (498)
Q Consensus 415 ~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~ 494 (498)
.+++.+.+.+|++|+||.+|+++|+++|+||+||+|++||||.|+.+.+..|++|+. +.+.++.+|+||.+||++|++
T Consensus 309 ~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--~~~~~v~~va~G~~ht~al~~ 386 (389)
T 3kci_A 309 RQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA--LQGKKVNRVACGSAHTLAWST 386 (389)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG--GTTSCCCEEEEETTEEEEECC
T ss_pred eEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecc--cCCCCEEEEEecCCcEEEEec
Confidence 888888888899999999999999999999999999999999999999999999985 478899999999999999998
Q ss_pred CC
Q psy1173 495 PK 496 (498)
Q Consensus 495 ~~ 496 (498)
++
T Consensus 387 ~~ 388 (389)
T 3kci_A 387 SK 388 (389)
T ss_dssp --
T ss_pred CC
Confidence 75
No 4
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-70 Score=551.50 Aligned_cols=403 Identities=32% Similarity=0.540 Sum_probs=328.9
Q ss_pred hccCCCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCC--CccccceeeecCC----CCcEEEEecCceEEEEe
Q psy1173 12 QAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPD--VMERKTFALVEDL----DNVVEVVVGGMHTVCLT 85 (498)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~--~~~~~~p~~v~~~----~~i~~i~~g~~~~~~l~ 85 (498)
....|...+....+.+.|+++++.+|+||+||.|.+||||++.. ..+...|.+++.+ .+|++|+||..|+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt 83 (473)
T 3of7_A 4 HHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALD 83 (473)
T ss_dssp -----CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEE
T ss_pred ccchhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEe
Confidence 45677888888889999999999999999999999999999964 2445677777543 58999999999999999
Q ss_pred cCCcEEEeeCCCCCCCCCcCCCCC----------------------cccceeeeC--------CCceeEEeecCCeEEEE
Q psy1173 86 EDGKVYTWGCNDEGALGREAEGDS----------------------EFIPQTVNL--------PKKAVQISAGDSHSVAL 135 (498)
Q Consensus 86 ~~g~l~~wG~n~~gqlg~~~~~~~----------------------~~~p~~~~~--------~~~i~~i~~g~~~~~~L 135 (498)
++|+||+||.|..||||.+..... ...|.+++. ..+|++|+||.+|+++|
T Consensus 84 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~al 163 (473)
T 3of7_A 84 EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCAL 163 (473)
T ss_dssp TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEE
T ss_pred cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEE
Confidence 999999999999999998665431 457777762 47899999999999999
Q ss_pred EcCCcEEEeCCcCCCCCccCCCCCC--cceecEEecccC--CeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccc
Q psy1173 136 LEDGTVYAWGSFRDSHGSMGLKGEG--IQKTPLKLESVS--GIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRS 211 (498)
Q Consensus 136 ~~~G~vy~~G~~~~~~g~lG~~~~~--~~~~p~~v~~~~--~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~ 211 (498)
+++|+||+||.+++.++|||..... ....|.++.... +|++|+||..|+++|+++|+||+||.|.++|||.+....
T Consensus 164 t~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~ 243 (473)
T 3of7_A 164 FSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMER 243 (473)
T ss_dssp ETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGG
T ss_pred eCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccc
Confidence 9999999999977889999985443 445888886554 499999999999999999999999999999999754321
Q ss_pred cccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCC
Q psy1173 212 ASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDK 291 (498)
Q Consensus 212 ~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~ 291 (498)
.. ... ..|..+.. .
T Consensus 244 ~~--------------------------------------------------------------~~~-~~p~~~~~---~ 257 (473)
T 3of7_A 244 FR--------------------------------------------------------------LKT-LDPRPFGL---R 257 (473)
T ss_dssp GT--------------------------------------------------------------TTT-CSCEECSC---C
T ss_pred cc--------------------------------------------------------------ccc-cCceecCC---c
Confidence 10 000 34444432 4
Q ss_pred cEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCC---CccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEE
Q psy1173 292 KFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSE---PVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGW 368 (498)
Q Consensus 292 ~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~w 368 (498)
+|++|+||..|++||+++|+||+||.|.+||||.+.... ....|++++.+.+.+|++|+||.+|+++|+++|+||+|
T Consensus 258 ~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~w 337 (473)
T 3of7_A 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337 (473)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred ceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEE
Confidence 699999999999999999999999999999999887542 34578889988888999999999999999999999999
Q ss_pred eCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEe
Q psy1173 369 GMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWG 448 (498)
Q Consensus 369 G~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG 448 (498)
|.|.++|||.+...... ..+. + ..........|.+++.+. +|++|+||.+|+++|+++|+||+||
T Consensus 338 G~n~~GqLG~~~~~~~~----~~~~---~------~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 338 GRLDMFEVGIPKDNLPE----YTYK---D------VHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp EECTTCTTCCCGGGCCT----TCEE---C------TTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ECCCCCccCCCcccccc----cccc---c------cCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 99999999987642110 0000 0 000111224567776555 4999999999999999999999999
Q ss_pred CCCCCCcCCCC-CCceeeeeEecccccCCceEEEEeeCCceEEEEecC
Q psy1173 449 MGNGYQLGNGK-EDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKP 495 (498)
Q Consensus 449 ~n~~gqLG~g~-~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~ 495 (498)
.|.+||||+|+ ..+...|++|+.+.+.+.++++|+||.+||+++..+
T Consensus 403 ~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 403 FGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp CCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 99999999999 789999999997777889999999999999999875
No 5
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=9.4e-70 Score=538.25 Aligned_cols=367 Identities=29% Similarity=0.538 Sum_probs=319.1
Q ss_pred HhhccCCCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCC--CCcEEEEecCceEEEEecC
Q psy1173 10 RKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDL--DNVVEVVVGGMHTVCLTED 87 (498)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~--~~i~~i~~g~~~~~~l~~~ 87 (498)
....+.|+.+++++++|..|+++|+.+|+||+||.|.+||||.+. ..+...|++++.+ .+|++|+||..|+++|+++
T Consensus 8 ~~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~-~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~ 86 (406)
T 4d9s_A 8 ADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD-AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQS 86 (406)
T ss_dssp -------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSS-CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETT
T ss_pred cccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCC-cccCcCCEEecccCCCCEEEEEeCcceEEEEECC
Confidence 345677889999999999999999999999999999999999995 4566788888644 4899999999999999988
Q ss_pred C-cEEEeeCCCCCCCCCcCCCCCcccceeee--CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCccee
Q psy1173 88 G-KVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKT 164 (498)
Q Consensus 88 g-~l~~wG~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~ 164 (498)
| +||+||.|.+||||.+... ....|.++. ...+|++|+||.+|+++|+++|+||+||. |.++|||.+.......
T Consensus 87 gg~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~--n~~GqLG~g~~~~~~~ 163 (406)
T 4d9s_A 87 GMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR--NQNGQLGLGDTEDSLV 163 (406)
T ss_dssp TTEEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEEC--CTTSTTCSSSCCCEEE
T ss_pred CCEEEEEcCCCCcCCCCCCCC-ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCC--CCCccCCCCCCCCccc
Confidence 6 9999999999999997663 356777776 34589999999999999999999999998 8899999999988889
Q ss_pred cEEecc--cCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeecc
Q psy1173 165 PLKLES--VSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGV 242 (498)
Q Consensus 165 p~~v~~--~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~ 242 (498)
|.++.. ..+|++|+||.+|+++|+++|+||+||.|.++|||.+....
T Consensus 164 p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~------------------------------- 212 (406)
T 4d9s_A 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD------------------------------- 212 (406)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCC-------------------------------
T ss_pred ceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCC-------------------------------
Confidence 999854 44899999999999999999999999999999998753211
Q ss_pred ceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCc
Q psy1173 243 YNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGR 322 (498)
Q Consensus 243 ~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gq 322 (498)
. ..|.++..+...+|++|+||..|+++|+++|+||+||.|.+||
T Consensus 213 -----------------------------------~-~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~Gq 256 (406)
T 4d9s_A 213 -----------------------------------R-LVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 256 (406)
T ss_dssp -----------------------------------E-EEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred -----------------------------------c-CccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCC
Confidence 1 4667777777788999999999999999999999999999999
Q ss_pred ccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccc
Q psy1173 323 LGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRL 402 (498)
Q Consensus 323 lg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~l 402 (498)
||.++.... ..|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.....
T Consensus 257 lG~g~~~~~-~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~------------------ 317 (406)
T 4d9s_A 257 LGHGDLEDH-LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ------------------ 317 (406)
T ss_dssp TCSSSCCCE-EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCE------------------
T ss_pred CCCCCCcCc-cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCC------------------
Confidence 999876544 4788898888889999999999999999999999999999999998764332
Q ss_pred cccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccC
Q psy1173 403 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLN 475 (498)
Q Consensus 403 g~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~ 475 (498)
..|.+++.+.+.+|++|+||.+|+++|+++|+||+||+|.+||||+|+..+...|+.|+.....
T Consensus 318 ---------~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 381 (406)
T 4d9s_A 318 ---------CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 381 (406)
T ss_dssp ---------EEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSC
T ss_pred ---------ccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCC
Confidence 5678887777778999999999999999999999999999999999999999999999865433
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=7.8e-63 Score=488.66 Aligned_cols=332 Identities=28% Similarity=0.514 Sum_probs=295.0
Q ss_pred cCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee--CCCceeEEeecCCeEEEEEcCC-cEE
Q psy1173 66 EDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDSHSVALLEDG-TVY 142 (498)
Q Consensus 66 ~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g~~~~~~L~~~G-~vy 142 (498)
....+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++. ...+|++|+||..|+++|+++| +||
T Consensus 13 ~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 13 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVY 91 (406)
T ss_dssp --CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEE
T ss_pred CCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEE
Confidence 3457899999999999999999999999999999999987654 46777776 3458999999999999999986 999
Q ss_pred EeCCcCCCCCccCCCCCCcceecEEecc--cCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCc
Q psy1173 143 AWGSFRDSHGSMGLKGEGIQKTPLKLES--VSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGM 220 (498)
Q Consensus 143 ~~G~~~~~~g~lG~~~~~~~~~p~~v~~--~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 220 (498)
+||. |.++|||.+.......|.++.. ..+|++|+||..|+++|+++|+||+||.|.++|||.+...
T Consensus 92 ~wG~--n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~---------- 159 (406)
T 4d9s_A 92 SWGW--GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE---------- 159 (406)
T ss_dssp EEEC--CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCC----------
T ss_pred EEcC--CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCC----------
Confidence 9998 8899999999888888888854 4489999999999999999999999999999999975421
Q ss_pred ccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCc
Q psy1173 221 SFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ 300 (498)
Q Consensus 221 ~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 300 (498)
.. ..|.++..+.+.+|++|+||.
T Consensus 160 --------------------------------------------------------~~-~~p~~v~~~~~~~i~~va~G~ 182 (406)
T 4d9s_A 160 --------------------------------------------------------DS-LVPQKIQAFEGIRIKMVAAGA 182 (406)
T ss_dssp --------------------------------------------------------CE-EEEEECGGGTTCCEEEEEECS
T ss_pred --------------------------------------------------------Cc-ccceEecccCCCcEEEEecCC
Confidence 11 567777777888899999999
Q ss_pred ceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCC
Q psy1173 301 HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGK 380 (498)
Q Consensus 301 ~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~ 380 (498)
.|+++|+++|+||+||.|.+||||.+...... .|.++..+...+|++|+||.+|+++|+++|+||+||.|.++|||++.
T Consensus 183 ~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~-~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~ 261 (406)
T 4d9s_A 183 EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL-VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 261 (406)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSSSSCCEE-EEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS
T ss_pred CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcC-ccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC
Confidence 99999999999999999999999998765544 78889888888999999999999999999999999999999999876
Q ss_pred CCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCC
Q psy1173 381 EDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 460 (498)
Q Consensus 381 ~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~ 460 (498)
.... ..|.+++.+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+..
T Consensus 262 ~~~~---------------------------~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 314 (406)
T 4d9s_A 262 LEDH---------------------------LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNN 314 (406)
T ss_dssp CCCE---------------------------EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS
T ss_pred CcCc---------------------------cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCC
Confidence 4322 6788888888888999999999999999999999999999999999999
Q ss_pred CceeeeeEecccccCCceEEEEeeCCceEEEEecCCC
Q psy1173 461 DDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKP 497 (498)
Q Consensus 461 ~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~~ 497 (498)
.+...|++|+.+ ...++++|+||.+|+++|+++++
T Consensus 315 ~~~~~p~~v~~~--~~~~v~~va~G~~hs~alt~~G~ 349 (406)
T 4d9s_A 315 LDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTERNN 349 (406)
T ss_dssp SCEEEEEEECCG--GGCCEEEEEECSSEEEEEETTSC
T ss_pred CCCccCEEEecc--CCCcEEEEEeCCCeEEEEeCCCC
Confidence 999999999865 66789999999999999998864
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9.7e-60 Score=468.42 Aligned_cols=330 Identities=30% Similarity=0.554 Sum_probs=284.4
Q ss_pred CcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCC-ccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeC
Q psy1173 17 SQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDV-MERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~-~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~ 95 (498)
+.++.++++|..|+++|+.+|+||+||.|.+||||.+... .....|.+|+...+|++|+||..|+++|+++|+||+||.
T Consensus 58 ~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 58 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence 4789999999999999999999999999999999998642 345678888656799999999999999999999999999
Q ss_pred --CCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCc-----------c
Q psy1173 96 --NDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGI-----------Q 162 (498)
Q Consensus 96 --n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~-----------~ 162 (498)
|.+||||..........|..+....+|++|+||.+|+++|+++|+||+||. |.++|||...... .
T Consensus 138 ~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~--n~~GqLG~~~~~~~~~~~~~~~~~~ 215 (413)
T 1a12_A 138 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGC--GEQGQLGRVPELFANRGGRQGLERL 215 (413)
T ss_dssp EEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEEC--CTTSTTCSCGGGTSSSCGGGGHHHH
T ss_pred CcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeC--CCCCccCCCcccccccccccccccc
Confidence 899999997766555678888888899999999999999999999999998 8999999865321 2
Q ss_pred eecEEec-------ccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccce
Q psy1173 163 KTPLKLE-------SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHI 235 (498)
Q Consensus 163 ~~p~~v~-------~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i 235 (498)
..|..+. ...+|++|+||.+|+++|+++|+||+||.|.++|||.+....
T Consensus 216 ~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~------------------------ 271 (413)
T 1a12_A 216 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES------------------------ 271 (413)
T ss_dssp HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC------------------------
T ss_pred ccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCc------------------------
Confidence 3676553 346899999999999999999999999999999998753311
Q ss_pred eeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCC--CcEEEEecCcceeEEEecCCcEE
Q psy1173 236 DDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSD--KKFTMLASGQHHSLALNSEGKIY 313 (498)
Q Consensus 236 ~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~--~~i~~i~~g~~~~~~lt~~G~v~ 313 (498)
. ..|..+..+.+ .+|++|+||..|+++|+++|+||
T Consensus 272 ------------------------------------------~-~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~ 308 (413)
T 1a12_A 272 ------------------------------------------C-FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 308 (413)
T ss_dssp ------------------------------------------E-EEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred ------------------------------------------c-cccEEchhccCCCceEEEEecccceEEEEeCCCCEE
Confidence 1 45666666655 66999999999999999999999
Q ss_pred EEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEE
Q psy1173 314 AFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYA 393 (498)
Q Consensus 314 ~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 393 (498)
+||.|.+||||.+........|++++.+. +|++|+||.+|+++|+++|+||+||.|.++|||.+...+.
T Consensus 309 ~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~--------- 377 (413)
T 1a12_A 309 SLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDA--------- 377 (413)
T ss_dssp EEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCE---------
T ss_pred EeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCc---------
Confidence 99999999999986656666899998776 6999999999999999999999999999999998865332
Q ss_pred ecccccccccccCCCCCCCCCeecCC--CCCCcEEEEEeCCceEEEEeCCCCE
Q psy1173 394 FGRHDYGRLGLKNVSEPVTEPTPIPS--LQDKTITSIACGNCVSFAIDSEGVL 444 (498)
Q Consensus 394 ~G~n~~g~lg~~~~~~~~~~p~~v~~--~~~~~i~~i~~g~~~~~~lt~~g~v 444 (498)
..|++++. +.+.+|++|+||.+|+++|+++|++
T Consensus 378 ------------------~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 378 ------------------WSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp ------------------EEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred ------------------ccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 66877764 4667899999999999999998864
No 8
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4e-60 Score=466.84 Aligned_cols=326 Identities=29% Similarity=0.518 Sum_probs=285.4
Q ss_pred cceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCC----CcEEEEecCceEEEEecCCcEEEe
Q psy1173 18 QKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLD----NVVEVVVGGMHTVCLTEDGKVYTW 93 (498)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~----~i~~i~~g~~~~~~l~~~g~l~~w 93 (498)
.++++++++..|+++|+.+|+||+||.|.+||||.+. ......|.+++.+. ++++|+||..|+++|+++|+||+|
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4688999999999999999999999999999999995 45667888886544 347899999999999999999999
Q ss_pred eCCCCCCCCCcCCCCCcccceeee--CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEec--
Q psy1173 94 GCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLE-- 169 (498)
Q Consensus 94 G~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~-- 169 (498)
|.|.+||||.+... ....|+.++ ...+|++|+||.+|+++|+++|+||+||. |.++|||.+.......|.++.
T Consensus 132 G~n~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~--n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK--GRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC--CGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCcCCCCCCc-cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCC--CCCCCcCCCCCcccccceEeccc
Confidence 99999999997664 356777776 33489999999999999999999999998 889999999998888999884
Q ss_pred ccCCeEEEeccC--CeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEe
Q psy1173 170 SVSGIVKIASGA--DHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFI 247 (498)
Q Consensus 170 ~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~ 247 (498)
...+|++|+||. .|+++|+++|+||+||.|.++|||.+...
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~------------------------------------- 251 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD------------------------------------- 251 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC-------------------------------------
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC-------------------------------------
Confidence 456799999995 89999999999999999999999875321
Q ss_pred ccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccC
Q psy1173 248 SSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKN 327 (498)
Q Consensus 248 ~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~ 327 (498)
.. ..|.++..+.+.+|++|+||..|++||+++|+||+||.|.+||||.+.
T Consensus 252 -----------------------------~~-~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 301 (389)
T 3kci_A 252 -----------------------------GC-KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301 (389)
T ss_dssp -----------------------------CE-EEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred -----------------------------Cc-cccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Confidence 11 567777778888899999999999999999999999999999999987
Q ss_pred CCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCC
Q psy1173 328 VSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNV 407 (498)
Q Consensus 328 ~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~ 407 (498)
... ...|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.....
T Consensus 302 ~~~-~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~----------------------- 357 (389)
T 3kci_A 302 DDH-VRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAI----------------------- 357 (389)
T ss_dssp CCC-EEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE-----------------------
T ss_pred Ccc-ccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCc-----------------------
Confidence 544 44799999888889999999999999999999999999999999998865433
Q ss_pred CCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCC
Q psy1173 408 SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 442 (498)
Q Consensus 408 ~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g 442 (498)
..|++++.+.+.+|++|+||.+|+++|++++
T Consensus 358 ----~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 358 ----QRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp ----EEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred ----cCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 6789998888889999999999999999764
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-58 Score=461.24 Aligned_cols=330 Identities=22% Similarity=0.284 Sum_probs=276.4
Q ss_pred cCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeC
Q psy1173 66 EDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWG 145 (498)
Q Consensus 66 ~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G 145 (498)
+...++++|++|..|+++++++|+||+||.|.+||||.+........|.+++....|++|+||..|+++|+++|+||+||
T Consensus 21 ~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 21 PPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp --------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeE
Confidence 34467899999999999999999999999999999999876566678888887788999999999999999999999999
Q ss_pred CcCCCCCccCCCCCCc--ceecEEecccCCeEEEeccCCeEEEEecCCcEEEEec--CCCCccccccccccccccccCcc
Q psy1173 146 SFRDSHGSMGLKGEGI--QKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGC--PEQGQLGRITQRSASRNARRGMS 221 (498)
Q Consensus 146 ~~~~~~g~lG~~~~~~--~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~--n~~gqlg~~~~~~~~~~~~~~~~ 221 (498)
. |.++|||.+.... ...|.++....+|++|+||..|+++|+++|+||+||. |.++|||.......
T Consensus 101 ~--n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~--------- 169 (423)
T 3mvd_K 101 C--NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK--------- 169 (423)
T ss_dssp C--CSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCE---------
T ss_pred C--CCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC---------
Confidence 8 8899999987765 4589999878899999999999999999999999998 99999986432110
Q ss_pred cccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcc
Q psy1173 222 FLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQH 301 (498)
Q Consensus 222 ~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 301 (498)
..|.++ +...+|++|+||..
T Consensus 170 ----------------------------------------------------------~~p~~~--~~~~~i~~va~G~~ 189 (423)
T 3mvd_K 170 ----------------------------------------------------------RTPIDL--MEGTVCCSIASGAD 189 (423)
T ss_dssp ----------------------------------------------------------EEEEES--STTCCEEEEEECSS
T ss_pred ----------------------------------------------------------ceeeEe--cCCCcEEEEecCCC
Confidence 223332 44567999999999
Q ss_pred eeEEEecCCcEEEEecCCCCcccccCCC----------CCccCCcccCCCCCCcEEEEeccCceeEEE-eCCCCEEEEeC
Q psy1173 302 HSLALNSEGKIYAFGRHDYGRLGLKNVS----------EPVTEPTPIPSLQDKTITSIACGNCVSFAI-DSEGVLYGWGM 370 (498)
Q Consensus 302 ~~~~lt~~G~v~~~G~n~~gqlg~~~~~----------~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~G~v~~wG~ 370 (498)
|++||+++|+||+||.|.+||||.+... .....|.++......+|++|+||.+|++++ +++|+||+||.
T Consensus 190 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~ 269 (423)
T 3mvd_K 190 HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGL 269 (423)
T ss_dssp EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeC
Confidence 9999999999999999999999987643 233478888877778999999999999999 69999999999
Q ss_pred CCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCC
Q psy1173 371 GNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMG 450 (498)
Q Consensus 371 n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n 450 (498)
|.++|||.+.... .....|.++. + .+|++|+||.+|+++|+++|+||+||+|
T Consensus 270 n~~gqlg~~~~~~-------------------------~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 270 NNFKQLAHETKGK-------------------------EFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp CTTCTTSSCCTTC-------------------------SEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CCCCcCCCCCCCC-------------------------ceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECC
Confidence 9999999854221 1124566655 3 3599999999999999999999999999
Q ss_pred CCCCcCCCCCCc-eeeeeEecccccCCceEEEEeeCCceEEEEecCCC
Q psy1173 451 NGYQLGNGKEDD-ILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKP 497 (498)
Q Consensus 451 ~~gqLG~g~~~~-~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~~ 497 (498)
.+||||.+.... ...|++|+.+ .+ +|++|+||.+|+++|+++++
T Consensus 322 ~~GqLG~g~~~~~~~~p~~v~~l--~~-~v~~ia~G~~hs~alt~~G~ 366 (423)
T 3mvd_K 322 EYGRLGLGDVKDVVEKPTIVKKL--TE-KIVSVGCGEVCSYAVTIDGK 366 (423)
T ss_dssp GGGTTCSSSCCSCEEEEEECTTC--CS-CEEEEEEETTEEEEEETTSC
T ss_pred CCCCCCCCCccccccCceEeccC--CC-CEEEEEcCCCeEEEEcCCCC
Confidence 999999999865 6789988853 44 89999999999999998864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-56 Score=452.51 Aligned_cols=329 Identities=28% Similarity=0.434 Sum_probs=273.1
Q ss_pred CcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCcc----------------------ccceeeecC-------
Q psy1173 17 SQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVME----------------------RKTFALVED------- 67 (498)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~----------------------~~~p~~v~~------- 67 (498)
..+++++++|..|+++|+.+|+||+||.|.+||||.+..... ...|.+|+.
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 458999999999999999999999999999999999854321 456777763
Q ss_pred -CCCcEEEEecCceEEEEecCCcEEEeeC--CCCCCCCCcCC-CCCcccceeeeCCC--ceeEEeecCCeEEEEEcCCcE
Q psy1173 68 -LDNVVEVVVGGMHTVCLTEDGKVYTWGC--NDEGALGREAE-GDSEFIPQTVNLPK--KAVQISAGDSHSVALLEDGTV 141 (498)
Q Consensus 68 -~~~i~~i~~g~~~~~~l~~~g~l~~wG~--n~~gqlg~~~~-~~~~~~p~~~~~~~--~i~~i~~g~~~~~~L~~~G~v 141 (498)
..+|++|+||..|+++|+++|+||+||. +..||||.... ......|..++... +|++|+||.+|+++|+++|+|
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 4789999999999999999999999998 67899998433 23456788877443 599999999999999999999
Q ss_pred EEeCCcCCCCCccCCCCCCc----ceecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccc
Q psy1173 142 YAWGSFRDSHGSMGLKGEGI----QKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNAR 217 (498)
Q Consensus 142 y~~G~~~~~~g~lG~~~~~~----~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~ 217 (498)
|+||. |.++|||.+.... ...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 226 ~~wG~--n~~GqLG~~~~~~~~~~~~~p~~~~-~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~----- 297 (473)
T 3of7_A 226 FAWGN--GQQNQLGRKVMERFRLKTLDPRPFG-LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED----- 297 (473)
T ss_dssp EEEEC--CTTSTTSSCCCGGGTTTTCSCEECS-CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT-----
T ss_pred EEEeC--CCCCCCCCCccccccccccCceecC-CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC-----
Confidence 99998 8899999986554 33677764 478999999999999999999999999999999997543110
Q ss_pred cCcccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEe
Q psy1173 218 RGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLA 297 (498)
Q Consensus 218 ~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~ 297 (498)
......|.++..+.+.+|++|+
T Consensus 298 ----------------------------------------------------------~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 298 ----------------------------------------------------------GALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp ----------------------------------------------------------TCEEEEEEECCCCTTCCEEEEE
T ss_pred ----------------------------------------------------------CceeeccccccccCCccEEEEE
Confidence 1112577888877778899999
Q ss_pred cCcceeEEEecCCcEEEEecCCCCcccccCCC-------------CCccCCcccCCCCCCcEEEEeccCceeEEEeCCCC
Q psy1173 298 SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVS-------------EPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGV 364 (498)
Q Consensus 298 ~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~-------------~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~ 364 (498)
||..|+++|+++|+||+||.|.+||||.+... .....|++++.+. +|++|+||.+|+++|+++|+
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~ 397 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGI 397 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSC
T ss_pred eCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCc
Confidence 99999999999999999999999999986531 1122455665443 69999999999999999999
Q ss_pred EEEEeCCCccccCCCC-CCcccCCCCcEEEecccccccccccCCCCCCCCCeecC--CCCCCcEEEEEeCCceEEEEeC
Q psy1173 365 LYGWGMGNGYQLGNGK-EDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIP--SLQDKTITSIACGNCVSFAIDS 440 (498)
Q Consensus 365 v~~wG~n~~gqlg~~~-~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~--~~~~~~i~~i~~g~~~~~~lt~ 440 (498)
||+||.|.+||||++. ... ...|++|+ .+.+.+|++|+||..|++++..
T Consensus 398 vy~wG~n~~GqLG~g~~~~~---------------------------~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 398 AYSWGFGETYAVGLGPFEDD---------------------------TEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEEEECCTTCTTCCCSCCSC---------------------------EEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCCcc---------------------------ccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 9999999999999886 222 26788887 4466789999999999999965
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.5e-53 Score=394.37 Aligned_cols=272 Identities=26% Similarity=0.405 Sum_probs=225.6
Q ss_pred eEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee
Q psy1173 38 VVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN 117 (498)
Q Consensus 38 ~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~ 117 (498)
+||+||.|...++ .+.+++.+.+|++|+||..|+++|+ +|+||+||.|..||||. |. .
T Consensus 3 ~v~~WG~n~~~~~----------~~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~---------p~--~ 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGE----------ATVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM---------PA--A 60 (282)
T ss_dssp EEEEECSCCTTST----------TCCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC---------CG--G
T ss_pred EEEEeCCCCCcCc----------ccCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC---------Cc--c
Confidence 6999999865443 2334555679999999999999998 99999999999999994 22 1
Q ss_pred CCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEe
Q psy1173 118 LPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAG 197 (498)
Q Consensus 118 ~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 197 (498)
...+|++|+||.+|+++|+ +|+||+||. |.++|||. |.++ ..+|++|+||.+|+++|+ +|+||+||
T Consensus 61 ~~~~i~~ia~G~~hs~~l~-~G~v~~wG~--n~~Gqlg~--------P~~~--~~~v~~ia~G~~hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 61 TQSGVDAIAAGNYHSLALK-DGEVIAWGG--NEDGQTTV--------PAEA--RSGVDAIAAGAWASYALK-DGKVIAWG 126 (282)
T ss_dssp GGSCCCEEEECSSEEEEEE-TTEEEEEEC--CTTSTTCC--------CGGG--SSSEEEEEEETTEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEE-CCEEEEeeC--CCCCCCCC--------Cccc--CCCeEEEECcCCEEEEEe-CCeEEEec
Confidence 2458999999999999996 999999998 88999985 3333 468999999999999999 99999999
Q ss_pred cCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCc
Q psy1173 198 CPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNT 277 (498)
Q Consensus 198 ~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~ 277 (498)
.|.++|||....
T Consensus 127 ~n~~gqlg~~~~-------------------------------------------------------------------- 138 (282)
T 3qhy_B 127 DDSDGQTTVPAE-------------------------------------------------------------------- 138 (282)
T ss_dssp CCTTSTTSCCGG--------------------------------------------------------------------
T ss_pred CCCCCcCCCCcc--------------------------------------------------------------------
Confidence 999999863100
Q ss_pred eeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeE
Q psy1173 278 CFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSF 357 (498)
Q Consensus 278 ~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~ 357 (498)
...+|++|+||..|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|++
T Consensus 139 -----------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~---------p~~~----~~~v~~i~~G~~hs~ 193 (282)
T 3qhy_B 139 -----------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV---------PAEA----QSGVDDVAGGIFHSL 193 (282)
T ss_dssp -----------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC---------CGGG----GSSEEEEEECSSEEE
T ss_pred -----------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC---------ceec----CCCeEEEEecCCEEE
Confidence 0124899999999999999 89999999999999983 3333 256999999999999
Q ss_pred EEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEE
Q psy1173 358 AIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 437 (498)
Q Consensus 358 ~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~ 437 (498)
+| ++|+||+||.|.++|||... + .+. +|++|+||.+|+++
T Consensus 194 al-~~G~v~~wG~n~~gqlg~p~-----------------------------------~--~~~--~v~~i~~G~~h~~a 233 (282)
T 3qhy_B 194 AL-KDGKVIAWGDNRYKQTTVPT-----------------------------------E--ALS--GVSAIASGEWYSLA 233 (282)
T ss_dssp EE-ETTEEEEEECCTTSTTCCCG-----------------------------------G--GGS--SCCEEEECSSCEEE
T ss_pred EE-ECCeEEEEECCCCCCCCCCc-----------------------------------c--cCC--CceEEEcCCCEEEE
Confidence 99 89999999999999987421 1 122 48999999999999
Q ss_pred EeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCceEEEEecCCC
Q psy1173 438 IDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKP 497 (498)
Q Consensus 438 lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~~ 497 (498)
|+ +|+||+||+|+++|++.. ..+.+|+||..|+++|+++++
T Consensus 234 l~-~g~v~~wG~n~~gq~~v~------------------~~v~~iaaG~~h~~al~~~~~ 274 (282)
T 3qhy_B 234 LK-NGKVIAWGSSRTAPSSVQ------------------SGVSSIEAGPNAAYALKGGSG 274 (282)
T ss_dssp EE-TTEEEEESTTCCCCGGGS------------------SCEEEEEECSSCEEEEEC---
T ss_pred EE-CCEEEEecCCCCccccCC------------------CCcEEEEECcCeEEEEecCCC
Confidence 99 999999999999998751 258899999999999998864
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.1e-47 Score=359.38 Aligned_cols=254 Identities=28% Similarity=0.422 Sum_probs=215.7
Q ss_pred CCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeC
Q psy1173 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~ 95 (498)
...++.++++|..|+++++ +|+||+||.|.+||||. | .+...+|++|+||..|+++|+ +|+||+||.
T Consensus 22 ~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~---------p--~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 22 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM---------P--AATQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp GSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC---------C--GGGGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC---------C--ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 3457999999999999998 99999999999999984 2 223468999999999999996 999999999
Q ss_pred CCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeE
Q psy1173 96 NDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIV 175 (498)
Q Consensus 96 n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~ 175 (498)
|.+||||. |..+ ..+|++|+||.+|+++|+ +|+||+||. |.++|||.. .+...+|+
T Consensus 89 n~~Gqlg~---------P~~~--~~~v~~ia~G~~hs~al~-~G~v~~wG~--n~~gqlg~~----------~~~~~~i~ 144 (282)
T 3qhy_B 89 NEDGQTTV---------PAEA--RSGVDAIAAGAWASYALK-DGKVIAWGD--DSDGQTTVP----------AEAQSGVT 144 (282)
T ss_dssp CTTSTTCC---------CGGG--SSSEEEEEEETTEEEEEE-TTEEEEEEC--CTTSTTSCC----------GGGGSSEE
T ss_pred CCCCCCCC---------Cccc--CCCeEEEECcCCEEEEEe-CCeEEEecC--CCCCcCCCC----------ccCCCCeE
Confidence 99999985 3332 458999999999999999 999999998 889999842 23457799
Q ss_pred EEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEE-eccCCcEE
Q psy1173 176 KIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSIL 254 (498)
Q Consensus 176 ~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~-~~~~g~v~ 254 (498)
+|+||..|+++|+ +|+||+||.|.++|||.+ ..+ ..+|++|+||..|++ + ++|+||
T Consensus 145 ~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p------------------~~~---~~~v~~i~~G~~hs~al-~~G~v~ 201 (282)
T 3qhy_B 145 ALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP------------------AEA---QSGVDDVAGGIFHSLAL-KDGKVI 201 (282)
T ss_dssp EEEECSSEEEEEE-TTEEEEEECCTTSTTSCC------------------GGG---GSSEEEEEECSSEEEEE-ETTEEE
T ss_pred EEEcccCEEEEEE-CCEEEEecCCCCCCCCCc------------------eec---CCCeEEEEecCCEEEEE-ECCeEE
Confidence 9999999999999 899999999999999731 111 457999999999999 8 999999
Q ss_pred EEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccC
Q psy1173 255 AFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTE 334 (498)
Q Consensus 255 ~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 334 (498)
+||.|.++|+|.+.. . ..+|++|+||..|+++|+ +|+||+||.|.++|++..
T Consensus 202 ~wG~n~~gqlg~p~~-----------------~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------- 253 (282)
T 3qhy_B 202 AWGDNRYKQTTVPTE-----------------A--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------- 253 (282)
T ss_dssp EEECCTTSTTCCCGG-----------------G--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------
T ss_pred EEECCCCCCCCCCcc-----------------c--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------
Confidence 999999999985432 0 124999999999999999 999999999999988751
Q ss_pred CcccCCCCCCcEEEEeccCceeEEEeCCCCEE
Q psy1173 335 PTPIPSLQDKTITSIACGNCVSFAIDSEGVLY 366 (498)
Q Consensus 335 p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~ 366 (498)
..|++|++|..|+++|+++++.+
T Consensus 254 ---------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ---------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ---------SCEEEEEECSSCEEEEEC-----
T ss_pred ---------CCcEEEEECcCeEEEEecCCCCC
Confidence 25999999999999999987654
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.18 E-value=0.2 Score=48.84 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=131.8
Q ss_pred CCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcC
Q psy1173 69 DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFR 148 (498)
Q Consensus 69 ~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~ 148 (498)
..|..++....+.+.-..||.|..|-.... + ...........|..++......+.-..||.|++|-...
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E----------CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSC-C----------EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 357777777777777788999999964321 0 11111113456888888666666778899999996511
Q ss_pred CCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccc
Q psy1173 149 DSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEV 228 (498)
Q Consensus 149 ~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i 228 (498)
+. ...........|..+.......+.-+.+|.|..|-.......- .....
T Consensus 203 ---~~---------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~------------------~~~~~ 252 (435)
T 1p22_A 203 ---GE---------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT------------------LRRVL 252 (435)
T ss_dssp ---CC---------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE------------------EEEEE
T ss_pred ---Cc---------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCce------------------eeeEe
Confidence 10 1111112345678888777788888899999999543221110 00011
Q ss_pred cccccceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEe
Q psy1173 229 PLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALN 307 (498)
Q Consensus 229 ~~~~~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 307 (498)
......+..+.......+ ...+|.|..|-..... ....+. .....|..++......+.-.
T Consensus 253 ~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~~-~~~~~v~~~~~~~~~l~~g~ 313 (435)
T 1p22_A 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE------------------FVRTLN-GHKRGIACLQYRDRLVVSGS 313 (435)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC------------------EEEEEE-CCSSCEEEEEEETTEEEEEE
T ss_pred cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc------------------EEEEEc-CCCCcEEEEEeCCCEEEEEe
Confidence 112344555555444444 6778888888543211 011111 11234666666666677778
Q ss_pred cCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeC
Q psy1173 308 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGM 370 (498)
Q Consensus 308 ~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~ 370 (498)
.+|.|..|-......+ ..+. .....|..++......+.-..+|.|..|-.
T Consensus 314 ~dg~i~iwd~~~~~~~------------~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 314 SDNTIRLWDIECGACL------------RVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp TTSCEEEEETTTCCEE------------EEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CCCeEEEEECCCCCEE------------EEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 8899999865331111 1111 122357777776666666678888888874
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.85 E-value=0.39 Score=46.74 Aligned_cols=240 Identities=8% Similarity=0.037 Sum_probs=130.0
Q ss_pred CCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCc
Q psy1173 68 LDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSF 147 (498)
Q Consensus 68 ~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~ 147 (498)
...|..++......+.-..||.|..|-....- ...........|..++......+.-..+|.|++|-..
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-----------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCC-----------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCc-----------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 35688888866666667789999999754321 1111112345688888888877888899999999641
Q ss_pred CCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCcc
Q psy1173 148 RDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGE 227 (498)
Q Consensus 148 ~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~ 227 (498)
. .. ..............|..++......+..+.+|.|..|-......+. .
T Consensus 242 ~--~~-------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------------------~ 291 (435)
T 1p22_A 242 S--PT-------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR---------------------T 291 (435)
T ss_dssp S--SS-------CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE---------------------E
T ss_pred C--CC-------CceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEE---------------------E
Confidence 1 00 0000011113345677777777777788889999999543211110 0
Q ss_pred ccccccceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEE
Q psy1173 228 VPLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLAL 306 (498)
Q Consensus 228 i~~~~~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l 306 (498)
+......+..+.......+ ...+|.|..|-..... ....+. .....|..++......+.-
T Consensus 292 ~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~------------------~~~~~~-~h~~~v~~~~~~~~~l~sg 352 (435)
T 1p22_A 292 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA------------------CLRVLE-GHEELVRCIRFDNKRIVSG 352 (435)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC------------------EEEEEC-CCSSCEEEEECCSSEEEEE
T ss_pred EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC------------------EEEEEe-CCcCcEEEEEecCCEEEEE
Confidence 1111233445544444444 6778888888543210 011111 1223477777766677777
Q ss_pred ecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCC
Q psy1173 307 NSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 307 t~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n 371 (498)
..+|.|..|-......... .....+..........|..++......+.-..+|.|..|-..
T Consensus 353 ~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRA----PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTS----CTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred eCCCcEEEEECCCCCCccc----cccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence 8899999986322110000 000000000011113455565545555555668888888754
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.17 E-value=1.5 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=17.2
Q ss_pred CceE-EEEeCCCCEEEEeCCCCCC
Q psy1173 432 NCVS-FAIDSEGVLYGWGMGNGYQ 454 (498)
Q Consensus 432 ~~~~-~~lt~~g~v~~wG~n~~gq 454 (498)
..|+ .++..+|+||+.|.+.++.
T Consensus 511 ~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 511 VYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp CTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccccHhhcCCCcEEEecCCCCCCC
Confidence 3565 4567899999999987653
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.06 E-value=1.2 Score=43.31 Aligned_cols=266 Identities=9% Similarity=0.091 Sum_probs=151.2
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDS 150 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~ 150 (498)
+..++......+.-..||.|..|-...... ..........|..++......+.-..||.|++|-. ..
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~--~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKC-----------LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA--ET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET--TT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcE-----------EEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEEC--Cc
Confidence 455666666666667888888887532210 01111134467777777777777788999999964 11
Q ss_pred CCccCCCCCCcceecEEe-cccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCcccc
Q psy1173 151 HGSMGLKGEGIQKTPLKL-ESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP 229 (498)
Q Consensus 151 ~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~ 229 (498)
+ .....+ .....|..+.......+..+.+|.|..|-......+. .+.
T Consensus 189 -~----------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---------------------~~~ 236 (445)
T 2ovr_B 189 -G----------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH---------------------VLM 236 (445)
T ss_dssp -T----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE---------------------EEE
T ss_pred -C----------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE---------------------EEc
Confidence 0 111111 2344577777777777888899999999543211110 011
Q ss_pred ccccceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEec
Q psy1173 230 LKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNS 308 (498)
Q Consensus 230 ~~~~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~ 308 (498)
.....+..+.......+ ...+|.+..|-.... .....+. .....|..++....+.+.-..
T Consensus 237 ~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------~~~~~~~-~~~~~v~~~~~~~~~l~~~~~ 297 (445)
T 2ovr_B 237 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE------------------TCLHTLQ-GHTNRVYSLQFDGIHVVSGSL 297 (445)
T ss_dssp CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT------------------EEEEEEC-CCSSCEEEEEECSSEEEEEET
T ss_pred CCcccEEEEEECCCEEEEEcCCCEEEEEECCCC------------------cEeEEec-CCCCceEEEEECCCEEEEEeC
Confidence 11334445544444444 677888888853221 0011111 122347777776677777788
Q ss_pred CCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCC
Q psy1173 309 EGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSE 388 (498)
Q Consensus 309 ~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~ 388 (498)
+|.|..|-......+. .+. .....+..+.......++-..+|.|..|-......
T Consensus 298 d~~i~i~d~~~~~~~~------------~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------- 351 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIH------------TLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------------- 351 (445)
T ss_dssp TSCEEEEETTTCCEEE------------EEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------------
T ss_pred CCeEEEEECCCCCEEE------------EEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-------------
Confidence 9999998653311110 111 11234666666666667777888888887432100
Q ss_pred CcEEEecccccccccccCCCCCCCCCeecCC--CCCCcEEEEEeCCceEEEEeCCCCEEEEeCCC
Q psy1173 389 GKIYAFGRHDYGRLGLKNVSEPVTEPTPIPS--LQDKTITSIACGNCVSFAIDSEGVLYGWGMGN 451 (498)
Q Consensus 389 ~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~--~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~ 451 (498)
+ ..+.. .....|..++....+.+.-..||.|..|-..+
T Consensus 352 --~-----------------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 352 --L-----------------------QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp --E-----------------------EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred --E-----------------------EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 0 01110 12234778888777777778899999996543
No 17
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.44 E-value=1.5 Score=40.09 Aligned_cols=154 Identities=14% Similarity=0.047 Sum_probs=81.2
Q ss_pred cCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCce-EEEEecCCcEEEeeCCCCCCCCCcC
Q psy1173 27 VPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMH-TVCLTEDGKVYTWGCNDEGALGREA 105 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~-~~~l~~~g~l~~wG~n~~gqlg~~~ 105 (498)
.-..+++.++|++++++......+..... ..............|..++..... .++...+|.|..|-.......
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~---- 85 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIP-RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK---- 85 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC----
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccC-CccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce----
Confidence 44567889999999988765544333211 111122222344567777765432 333345888999875432211
Q ss_pred CCCCcccceee--eCCCceeEEeecCCe--EEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEecc-
Q psy1173 106 EGDSEFIPQTV--NLPKKAVQISAGDSH--SVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASG- 180 (498)
Q Consensus 106 ~~~~~~~p~~~--~~~~~i~~i~~g~~~--~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g- 180 (498)
....... .....|..++...+. .+.-..+|.|++|-... . ..............|..+...
T Consensus 86 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~--------~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 86 ----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA--P--------TPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp ----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC--C----------EEEEEEECSSSCEEEEEECT
T ss_pred ----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC--C--------CcceeeecccCCCceEEEEECC
Confidence 0111111 234567777766543 44446789999996411 0 000111111233456666543
Q ss_pred -CCeEEEEecCCcEEEEecC
Q psy1173 181 -ADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 181 -~~~~~~l~~~g~v~~~G~n 199 (498)
....+..+.+|.|+.|-..
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~ 171 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp TSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEeCC
Confidence 3355566778899998543
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.28 E-value=0.031 Score=48.59 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=83.5
Q ss_pred HHHHHHhhccCCCcceEE-eecCcCcccc-----cc-------cCCeEEEEecCCCCCCCCCCCCccccceeeec-----
Q psy1173 5 LKKVLRKQAENPSQKVFV-TSEAVPTLKC-----KT-------GGGVVLTCGQGDTGQLGLGPDVMERKTFALVE----- 66 (498)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-------~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~----- 66 (498)
+--++.... .|...++- ++.+..|.++ +. ...+|++.--|..|-. +..+...|.-+.
T Consensus 227 ~na~l~nt~-k~l~~V~D~~rIg~n~iv~~~~~~iv~t~~~Ta~~~kv~V~~In~ggni----TltdV~~t~~v~nh~tg 301 (400)
T 4gbf_A 227 FNDFVNNTI-KPLNHVIDSMSIGCTHIIMHSIDPLVAPEDYTSESSKVHVMEIIRNGND----TSFMVISPLWFDGRGND 301 (400)
T ss_dssp HHHHHHHTT-GGGTCEEEEEEECSSEEEEEEECTTSCGGGCCTTTEEEEEEEEEEETTE----EEEEEECCCCBCTTSCB
T ss_pred HHHHHHhhh-cccceeeeeEEecccEEEEecccceeccCCCcceeeEEEEEEEecCCce----EEEEeeceeEEecCCCC
Confidence 334454333 34444444 7888777764 11 2336666444433221 123333333331
Q ss_pred -----CCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcE
Q psy1173 67 -----DLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTV 141 (498)
Q Consensus 67 -----~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~v 141 (498)
+...|..|+....|+.++.-|++|+++|+++.||+-.... ..++.++.+|.++++-+..-..+
T Consensus 302 ~~~~ansn~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------agPfla~~AG~~fTVTVn~~nyv 369 (400)
T 4gbf_A 302 VTANVNSNPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------AGPYIQLAAGHNFTVTVNTLNQV 369 (400)
T ss_dssp CHHHHHTSCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------GCCEEEEEECSSEEEEEETTCCE
T ss_pred eEEEecCCccccccccccceEEEecCceeEEeccCCCCceecCCC------------cchHHhHhccCCeEEEEeceeeE
Confidence 2256889999999999999999999999999999876433 22577899999999999999999
Q ss_pred EEeCC
Q psy1173 142 YAWGS 146 (498)
Q Consensus 142 y~~G~ 146 (498)
-.||.
T Consensus 370 ~FWGD 374 (400)
T 4gbf_A 370 MFWGD 374 (400)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99997
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.16 E-value=2.5 Score=40.91 Aligned_cols=228 Identities=10% Similarity=0.068 Sum_probs=131.6
Q ss_pred CCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcC
Q psy1173 69 DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFR 148 (498)
Q Consensus 69 ~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~ 148 (498)
..|..++......+.-..||.|..|-.... ............|..++......+.-..+|.|++|-.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~-- 226 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETG-----------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI-- 226 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES--
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCcC-----------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC--
Confidence 467778777777777778999999975321 0111111234567788887788888889999999964
Q ss_pred CCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccc
Q psy1173 149 DSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEV 228 (498)
Q Consensus 149 ~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i 228 (498)
... ............|..++......+.-+.+|.|..|-......+ ..+
T Consensus 227 ~~~----------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------~~~ 275 (445)
T 2ovr_B 227 ETG----------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL---------------------HTL 275 (445)
T ss_dssp SSC----------CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE---------------------EEE
T ss_pred CCC----------cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEe---------------------EEe
Confidence 110 0111111234557777776667777788999999943221000 001
Q ss_pred cccccceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEe
Q psy1173 229 PLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALN 307 (498)
Q Consensus 229 ~~~~~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 307 (498)
......+..+.......+ ...+|.+..|-...... ...+. .....+..++......+.-.
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~-~~~~~v~~~~~~~~~l~~~~ 336 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC------------------IHTLT-GHQSLTSGMELKDNILVSGN 336 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE------------------EEEEC-CCCSCEEEEEEETTEEEEEE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE------------------EEEEc-CCcccEEEEEEeCCEEEEEe
Confidence 112334555555444444 67788888885432110 01111 11223555666566667777
Q ss_pred cCCcEEEEecCCCCcccccCCCCCccCCcccCC--CCCCcEEEEeccCceeEEEeCCCCEEEEeCC
Q psy1173 308 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPS--LQDKTITSIACGNCVSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 308 ~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~--~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n 371 (498)
.+|.|..|-......+ ..+.. .....|..++....+.++-..+|.|..|-..
T Consensus 337 ~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTSCEEEEETTTCCEE------------EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEECCCCcEE------------EEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 8999999864321111 11111 1224577888777777777789999999753
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.11 E-value=0.034 Score=48.32 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=58.2
Q ss_pred CcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeC
Q psy1173 291 KKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGM 370 (498)
Q Consensus 291 ~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~ 370 (498)
..|..|+....|.+++--+++++.||+++.||+...... -...++.+|..+++-+..-..+--||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecC
Confidence 458889999999999999999999999999999754322 237899999999999999999999997
Q ss_pred CCc
Q psy1173 371 GNG 373 (498)
Q Consensus 371 n~~ 373 (498)
...
T Consensus 375 SPD 377 (400)
T 4gbf_A 375 SPD 377 (400)
T ss_dssp CTT
T ss_pred CCC
Confidence 544
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.86 E-value=1 Score=46.54 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred ceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEe----ccCcee-EEEeCCCCEEEEeCCCcc
Q psy1173 301 HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA----CGNCVS-FAIDSEGVLYGWGMGNGY 374 (498)
Q Consensus 301 ~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~----~g~~~~-~~lt~~G~v~~wG~n~~g 374 (498)
.|.+++..+|+||.+|-...++..... .....+ .+-.+...+...+. .-.+|+ +++..+|+||+.|.+.++
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~--~~~~~v-~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDS--TPVFTP-EIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCC--SBCCCC-EEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCC--Ccccce-EEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 577777779999999954333210000 000000 00011112222222 134565 556689999999987554
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.17 E-value=3.5 Score=42.88 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=14.9
Q ss_pred CcceeEEEecCCcEEEEec
Q psy1173 299 GQHHSLALNSEGKIYAFGR 317 (498)
Q Consensus 299 g~~~~~~lt~~G~v~~~G~ 317 (498)
...|+++...+++||.+|-
T Consensus 597 R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CBSCEEEEEETTEEEEECC
T ss_pred cccceEEEeCCCEEEEECC
Confidence 3567888777799999984
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.41 E-value=11 Score=34.71 Aligned_cols=110 Identities=7% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCcEEEEec------CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee--CCCceeEEeecCC------eEEE
Q psy1173 69 DNVVEVVVG------GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDS------HSVA 134 (498)
Q Consensus 69 ~~i~~i~~g------~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g~~------~~~~ 134 (498)
..|..|+.. ....++-..++.|..|-......+. ....... ....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR--------LLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE--------EEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE--------eeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 467777775 4456666778888888754321110 0111110 2345777776555 4455
Q ss_pred EEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccC---CeEEEEecCCcEEEEecC
Q psy1173 135 LLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGA---DHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 135 L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~n 199 (498)
-..+|.|++|-. .. + .....+ .....|..+.... ...+....+|.|..|-..
T Consensus 91 ~~~dg~i~v~d~--~~-~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 91 AGSRGIIRIINP--IT-M----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EETTCEEEEECT--TT-C----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ecCCCEEEEEEc--hh-c----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 568899999974 11 0 011112 2345677777643 455666788999999543
No 24
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.94 E-value=13 Score=35.08 Aligned_cols=104 Identities=9% Similarity=0.125 Sum_probs=64.8
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee--CCCceeEEeecCC--eEEEEEcCCcEEEeCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN--LPKKAVQISAGDS--HSVALLEDGTVYAWGS 146 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~--~~~~i~~i~~g~~--~~~~L~~~G~vy~~G~ 146 (498)
+..++....+.++...+|.|+.|-..... ....+. ....|..++...+ ..++-..+|.|++|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466666778888899999999854321 112222 2456777776544 4444567899999964
Q ss_pred cCCCCCccCCCCCCcceecEEe-cccCCeEEEeccCCeEEEEecCCcEEEEecC
Q psy1173 147 FRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 147 ~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n 199 (498)
... .....+ .....|..++......+..+.+|.|+.|-..
T Consensus 164 --~~~-----------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 164 --ESQ-----------TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp --TTC-----------CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred --cCC-----------eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 111 011111 3345677787767777778889999999543
No 25
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.48 E-value=13 Score=33.14 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCcEEEEec-CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceee-eCCCceeEEeecC--CeEEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVG-GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTV-NLPKKAVQISAGD--SHSVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g-~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~-~~~~~i~~i~~g~--~~~~~L~~~G~vy~~ 144 (498)
..|..++.- ....+.-..||.|..|-.... .....+ .....|..++... ...+.-..+|.++.|
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 467777652 334445567899999975321 111112 2345566666544 344455678888888
Q ss_pred CCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEecCCcEEEEe
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAG 197 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 197 (498)
-....... ............|..++......+..+.+|.|..|-
T Consensus 87 ~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 87 PLFATSGE---------DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp ETTCCTTS---------CC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred EeeecCCC---------CcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 64111100 001111123456777777667777788899999994
No 26
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.68 E-value=21 Score=36.95 Aligned_cols=20 Identities=10% Similarity=-0.164 Sum_probs=15.6
Q ss_pred CceEEEEeCCCCEEEEeCCC
Q psy1173 432 NCVSFAIDSEGVLYGWGMGN 451 (498)
Q Consensus 432 ~~~~~~lt~~g~v~~wG~n~ 451 (498)
..|++++..+++||.+|-..
T Consensus 598 ~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp BSCEEEEEETTEEEEECCBC
T ss_pred ccceEEEeCCCEEEEECCcc
Confidence 46778877778999998643
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=84.91 E-value=25 Score=32.66 Aligned_cols=71 Identities=8% Similarity=0.142 Sum_probs=39.0
Q ss_pred CCceeEEeecCCeEEEEEc--------CCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEecc-CCeEEEEec
Q psy1173 119 PKKAVQISAGDSHSVALLE--------DGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASG-ADHFVMLTS 189 (498)
Q Consensus 119 ~~~i~~i~~g~~~~~~L~~--------~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g-~~~~~~l~~ 189 (498)
...|..|+...+..++++. ||.++.|-... + ................|..++.. ....++-..
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~---~-----~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~ 113 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE---G-----APNESLCTAGVQTEAGVTDVAWVSEKGILVASD 113 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----------CGGGCSEEEECSSCEEEEEEETTTEEEEEET
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC---C-----CcceeEecccCCCCCCEEEEEEcCCCCEEEEEC
Confidence 4567788887777777663 56788886411 1 11111111222233456666643 335556677
Q ss_pred CCcEEEEe
Q psy1173 190 RGNLLTAG 197 (498)
Q Consensus 190 ~g~v~~~G 197 (498)
+|.|..|-
T Consensus 114 dg~v~lWd 121 (357)
T 4g56_B 114 SGAVELWE 121 (357)
T ss_dssp TSCEEEC-
T ss_pred CCEEEEee
Confidence 88888883
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=84.25 E-value=35 Score=33.95 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=126.4
Q ss_pred CcCcccccccCCeEEEEecCCCCCCCCCCCCccc----cceeeec-CCCC-cEEEEecC----ceEEEEecCCcEEEeeC
Q psy1173 26 AVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMER----KTFALVE-DLDN-VVEVVVGG----MHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 26 ~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~----~~p~~v~-~~~~-i~~i~~g~----~~~~~l~~~g~l~~wG~ 95 (498)
+.-.++++.++|++++.|... .+-.= +.... .....+. .... |..++... .+.+.-..||.|..|-.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~--~v~v~-~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGK--SAFVR-CLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETT--EEEEE-ECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEECCCCCEEEEecCC--eEEEE-ECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 344556677777777776521 11110 00111 1122222 2345 77777755 33344457888888874
Q ss_pred CCCCCCCCcCCCCCcccceeee-CCCceeEEeecCCeEEEE--EcC----CcEEEeCCcCCCCCccCCCCCCcceecEEe
Q psy1173 96 NDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDSHSVAL--LED----GTVYAWGSFRDSHGSMGLKGEGIQKTPLKL 168 (498)
Q Consensus 96 n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~~~~~L--~~~----G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v 168 (498)
........ ........+. ....|..++...+...++ ..+ +.|+.|-. . . ....+
T Consensus 96 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~--~-----------~~~~~ 156 (615)
T 1pgu_A 96 TFDKESNS----VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G--N-----------SLGEV 156 (615)
T ss_dssp EEEGGGTE----EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C--C-----------EEEEC
T ss_pred CCCccccc----ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C--C-----------cceee
Confidence 21100000 0000111111 345677777665543333 333 67888853 1 0 00111
Q ss_pred -cccCCeEEEeccCC---eEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCcccccccc---ceeeeeec
Q psy1173 169 -ESVSGIVKIASGAD---HFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRK---HIDDVFTG 241 (498)
Q Consensus 169 -~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~---~i~~i~~g 241 (498)
.....|..+..... ..+....++.|..|-......+ ..+..... .|..++..
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---------------------ASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---------------------EEECSSSCTTCCEEEEEEC
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee---------------------eeecccCCCCceEEEEEEC
Confidence 22334555554443 4556678899999943221000 00111122 45566544
Q ss_pred cc---eEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecc---cCCCcEEEEec-CcceeEEEecCCcEE
Q psy1173 242 VY---NTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKS---LSDKKFTMLAS-GQHHSLALNSEGKIY 313 (498)
Q Consensus 242 ~~---~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~---~~~~~i~~i~~-g~~~~~~lt~~G~v~ 313 (498)
.. ..+ ...+|.|+.|-..... ....+.. .....|..++. .....+....+|.|.
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~ 277 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGE------------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCC------------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC------------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEE
Confidence 33 233 5678888888542211 0111101 12234555555 334455556788888
Q ss_pred EEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEec-cCceeEEEeCCCCEEEEeCCC
Q psy1173 314 AFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIAC-GNCVSFAIDSEGVLYGWGMGN 372 (498)
Q Consensus 314 ~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~-g~~~~~~lt~~G~v~~wG~n~ 372 (498)
.|-......+..-. .+ .......+..+.. .....++-..+|.|+.|-...
T Consensus 278 ~wd~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 278 VWDVTTSKCVQKWT------LD---KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEETTTTEEEEEEE------CC---TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEECCCCcEEEEEc------CC---CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 88653211111000 00 0000112333333 555667778899999997654
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=83.37 E-value=60 Score=35.95 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCcEEEEec--CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC-eEEEEEcCCcEEEeC
Q psy1173 69 DNVVEVVVG--GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS-HSVALLEDGTVYAWG 145 (498)
Q Consensus 69 ~~i~~i~~g--~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~-~~~~L~~~G~vy~~G 145 (498)
..|..++.. ..+.+....||.|..|-......+ ........+..++...+ ..+....+|.+++|-
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 345555553 334444557889999975432110 11123345666665443 344556789999997
Q ss_pred C
Q psy1173 146 S 146 (498)
Q Consensus 146 ~ 146 (498)
.
T Consensus 1072 ~ 1072 (1249)
T 3sfz_A 1072 V 1072 (1249)
T ss_dssp T
T ss_pred C
Confidence 4
No 30
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.65 E-value=32 Score=32.29 Aligned_cols=140 Identities=7% Similarity=-0.066 Sum_probs=78.9
Q ss_pred CcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecC--ceEEEEecCCcEEEeeCCCCCCCCCcC
Q psy1173 28 PTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGG--MHTVCLTEDGKVYTWGCNDEGALGREA 105 (498)
Q Consensus 28 ~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~--~~~~~l~~~g~l~~wG~n~~gqlg~~~ 105 (498)
...++...+|.|+.|-.... ....-........|..|+... .+.++-..+|.|..|-.....
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~----------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 167 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG----------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------ 167 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC----------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------
T ss_pred CCEEEEECCCeEEEeeCCCC----------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe------
Confidence 45566678888999875421 111111111234577777643 445555678999999743321
Q ss_pred CCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEecc--CCe
Q psy1173 106 EGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASG--ADH 183 (498)
Q Consensus 106 ~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g--~~~ 183 (498)
...........|..++......+.-..+|.|+.|-. .... ...-........|..++.. ...
T Consensus 168 -----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~--~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 168 -----KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDV--RIAN---------HQIGTLQGHSSEVCGLAWRSDGLQ 231 (401)
T ss_dssp -----EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET--TSSS---------CEEEEEECCSSCEEEEEECTTSSE
T ss_pred -----EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEec--ccCc---------ceeeEEcCCCCCeeEEEEcCCCCE
Confidence 111111244577888887777777889999999975 1000 0011111234456666654 334
Q ss_pred EEEEecCCcEEEEecC
Q psy1173 184 FVMLTSRGNLLTAGCP 199 (498)
Q Consensus 184 ~~~l~~~g~v~~~G~n 199 (498)
.+.-+.++.|..|-..
T Consensus 232 l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 232 LASGGNDNVVQIWDAR 247 (401)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEeCCCeEEEccCC
Confidence 5556778899999543
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=82.49 E-value=26 Score=31.10 Aligned_cols=227 Identities=7% Similarity=-0.010 Sum_probs=113.7
Q ss_pred CCcEEEEec--CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCC
Q psy1173 69 DNVVEVVVG--GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 69 ~~i~~i~~g--~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~ 146 (498)
..|..++.. ..+.+.-..+|.+..|-...... .............|..++......+.-..+|.|+.|-.
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~ 131 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE 131 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC
Confidence 445555543 34444556777777776433210 01111222244577888887777777788999999942
Q ss_pred cCCCCCccCCCCCCcceecEEecccCCeEEEec---cCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccc
Q psy1173 147 FRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS---GADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFL 223 (498)
Q Consensus 147 ~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~---g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~ 223 (498)
. ............+..+.. .....+..+.+|.|..|-.. +.
T Consensus 132 --~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~------------------- 175 (313)
T 3odt_A 132 --G------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KV------------------- 175 (313)
T ss_dssp --T------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EE-------------------
T ss_pred --C------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ce-------------------
Confidence 0 011111123445555554 45566777888999998411 00
Q ss_pred cCccccccccceeeeeeccc-eEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcc
Q psy1173 224 EPGEVPLKRKHIDDVFTGVY-NTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQH 301 (498)
Q Consensus 224 ~p~~i~~~~~~i~~i~~g~~-~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 301 (498)
...........+..++.... ..+ ...+|.++.|-..... ....+. .....|..++...+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~------------------~~~~~~-~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 176 IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD------------------VLRTYE-GHESFVYCIKLLPN 236 (313)
T ss_dssp EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC------------------EEEEEE-CCSSCEEEEEECTT
T ss_pred EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh------------------hhhhhh-cCCceEEEEEEecC
Confidence 00000001233444433222 133 6778888888543211 001111 11234666655433
Q ss_pred -eeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCc-eeEEEeCCCCEEEEeCC
Q psy1173 302 -HSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNC-VSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 302 -~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~lt~~G~v~~wG~n 371 (498)
..++-..+|.|+.|-......+ ..+. .....|..++...+ ..++-..+|.|+.|-..
T Consensus 237 ~~l~~~~~dg~v~iwd~~~~~~~------------~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 237 GDIVSCGEDRTVRIWSKENGSLK------------QVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp SCEEEEETTSEEEEECTTTCCEE------------EEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred CCEEEEecCCEEEEEECCCCcee------------EEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 4556677888888864321100 1111 11234666665433 34555678888888754
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=80.95 E-value=35 Score=31.63 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=64.7
Q ss_pred CCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecCC---------eEEEEEcC
Q psy1173 69 DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDS---------HSVALLED 138 (498)
Q Consensus 69 ~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~---------~~~~L~~~ 138 (498)
..|..|+......+.-..||.|+.|-...... .........+. ....|..++.... ..+.-..+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 46888888776666667899999998643210 00011112222 4456777776644 34444678
Q ss_pred CcEEEeCCcCCCCCccCCCCCCcceecEEecc------cCCeEEEecc------CCe-EEEEecCCcEEEEecC
Q psy1173 139 GTVYAWGSFRDSHGSMGLKGEGIQKTPLKLES------VSGIVKIASG------ADH-FVMLTSRGNLLTAGCP 199 (498)
Q Consensus 139 G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~------~~~i~~i~~g------~~~-~~~l~~~g~v~~~G~n 199 (498)
|.|++|-.... . .........+.. ...|..++.. ... .+..+.+|.|+.|-..
T Consensus 91 g~i~iw~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 91 GDLLFYRITRE---D-----ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp SCEEEEEEEEC---T-----TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEccCC---c-----ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 99999964111 0 000001222222 2567777665 334 5555788999999543
No 33
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=80.22 E-value=37 Score=31.44 Aligned_cols=259 Identities=7% Similarity=-0.070 Sum_probs=117.7
Q ss_pred CCcEEEEecC---ceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccce--eeeCCCceeEEeecC---CeEEEEEcCCc
Q psy1173 69 DNVVEVVVGG---MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQ--TVNLPKKAVQISAGD---SHSVALLEDGT 140 (498)
Q Consensus 69 ~~i~~i~~g~---~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~--~~~~~~~i~~i~~g~---~~~~~L~~~G~ 140 (498)
..|..++... ...+.-..||.|..|-..................+. .-.....|..++... ...+.-..+|.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 5677777754 444455679999999765432211100000000000 001345677777644 34555667899
Q ss_pred EEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCC-----eEEEEecCCcEEEEecCCCCccccccccccccc
Q psy1173 141 VYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGAD-----HFVMLTSRGNLLTAGCPEQGQLGRITQRSASRN 215 (498)
Q Consensus 141 vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~-----~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~ 215 (498)
|++|-. .. + .....+.....+..+..... ..++-..++.|+.|-......+
T Consensus 124 i~iwd~--~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----------- 179 (408)
T 4a11_B 124 LKVWDT--NT-L----------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----------- 179 (408)
T ss_dssp EEEEET--TT-T----------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-----------
T ss_pred EEEeeC--CC-C----------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-----------
Confidence 999964 11 0 11111223344555544322 4556678899999954321111
Q ss_pred cccCcccccCccccccccceeeeeeccc---eEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCC
Q psy1173 216 ARRGMSFLEPGEVPLKRKHIDDVFTGVY---NTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDK 291 (498)
Q Consensus 216 ~~~~~~~~~p~~i~~~~~~i~~i~~g~~---~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~ 291 (498)
..+......|..++.... ..+ ...+|.|+.|-.......-....... ......+.........
T Consensus 180 ----------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 180 ----------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN---GKKSQAVESANTAHNG 246 (408)
T ss_dssp ----------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT---TCSCCCTTTSSCSCSS
T ss_pred ----------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc---cccceeeccccccccC
Confidence 011112334555544332 233 67788888886543221100000000 0000000001111223
Q ss_pred cEEEEecCc--ceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEe
Q psy1173 292 KFTMLASGQ--HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWG 369 (498)
Q Consensus 292 ~i~~i~~g~--~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG 369 (498)
.|..++... .+.+....+|.|..|-......+-... ............+..........++...++.|+.|-
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY------GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC------CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc------ccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 466666543 355566778899999754322111100 000001111112222233344555556778888887
Q ss_pred C
Q psy1173 370 M 370 (498)
Q Consensus 370 ~ 370 (498)
.
T Consensus 321 ~ 321 (408)
T 4a11_B 321 V 321 (408)
T ss_dssp T
T ss_pred C
Confidence 5
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=79.45 E-value=38 Score=31.02 Aligned_cols=109 Identities=9% Similarity=0.132 Sum_probs=59.9
Q ss_pred CCcEEEEecCce--EEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeec----CCeEEEEEcCCcE
Q psy1173 69 DNVVEVVVGGMH--TVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAG----DSHSVALLEDGTV 141 (498)
Q Consensus 69 ~~i~~i~~g~~~--~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g----~~~~~~L~~~G~v 141 (498)
..|..++..... .+.-..||.|..|=.... .......+. ....|..++.. ....+.-..||.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 456676665433 333346888888864310 001111111 34567777765 4455566788999
Q ss_pred EEeCCcCCCCCccCCCCCCcceecEEe--cccCCeEEEeccC----CeEEEEecCCcEEEEecC
Q psy1173 142 YAWGSFRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIASGA----DHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 142 y~~G~~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n 199 (498)
++|-.... ...+... .....|..++... ...+..+.++.|..|-..
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 99964110 0111111 2345577776553 356666788999999644
No 35
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=76.08 E-value=56 Score=31.19 Aligned_cols=240 Identities=9% Similarity=0.077 Sum_probs=121.8
Q ss_pred cEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC-eEEEEEcCCcEEEeCCcCC
Q psy1173 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS-HSVALLEDGTVYAWGSFRD 149 (498)
Q Consensus 71 i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~-~~~~L~~~G~vy~~G~~~~ 149 (498)
+..++....+.+.-..||.|..|-..... ...........|..++...+ ..+.-..||.|.+|-. .
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-----------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~--~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKK-----------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI--K 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET--T
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCc-----------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC--C
Confidence 45666666666677789999999743211 11111113456777776654 4445568899999964 1
Q ss_pred CCCccCCCCCCcceecEEe-cccCCeEEEecc----CCeEEEEecCCcEEEEecCCCCccccccccccccccccCccccc
Q psy1173 150 SHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG----ADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLE 224 (498)
Q Consensus 150 ~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g----~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~ 224 (498)
. + .....+ .....|..+... ....+.-+.++.|..|-............... .......
T Consensus 192 ~-~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~ 255 (464)
T 3v7d_B 192 K-G----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-----YPLVFHT 255 (464)
T ss_dssp T-T----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-----SSEEESC
T ss_pred C-C----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-----cceEeec
Confidence 0 0 111111 233456655543 24566677899999997554322211100000 0000001
Q ss_pred Cc-------cccccccceeeeeeccceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEE
Q psy1173 225 PG-------EVPLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTML 296 (498)
Q Consensus 225 p~-------~i~~~~~~i~~i~~g~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i 296 (498)
|. ........+..+.......+ ...+|.|+.|-..... ....+. .....|..+
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~-~~~~~v~~~ 316 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK------------------CLYILS-GHTDRIYST 316 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE------------------EEEEEC-CCSSCEEEE
T ss_pred cCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------EEEEec-CCCCCEEEE
Confidence 10 01112334445544444444 6778888888542210 001111 112235555
Q ss_pred ecC--cceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCC
Q psy1173 297 ASG--QHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 297 ~~g--~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n 371 (498)
+.. ....+.-..+|.|+.|-......+ ..+. .....|..++....+.+.-..+|.|..|-..
T Consensus 317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~------------~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 317 IYDHERKRCISASMDTTIRIWDLENGELM------------YTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEE------------EEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEE------------EEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence 443 235555677888888864321110 1111 1223577777777777777889999999754
No 36
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=75.17 E-value=82 Score=32.71 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=58.9
Q ss_pred CcEEEEecC--ceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceee-eCCCceeEEeec----CCeEEEEEcCCcEE
Q psy1173 70 NVVEVVVGG--MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTV-NLPKKAVQISAG----DSHSVALLEDGTVY 142 (498)
Q Consensus 70 ~i~~i~~g~--~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~-~~~~~i~~i~~g----~~~~~~L~~~G~vy 142 (498)
.|..++... ...+.-..||.|..|-.... .......+ .....|..++.. ....+.-..||.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 455555543 23334457888888863210 00011111 134567788765 34455667889999
Q ss_pred EeCCcCCCCCccCCCCCCcceecEEe--cccCCeEEEeccC----CeEEEEecCCcEEEEecC
Q psy1173 143 AWGSFRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIASGA----DHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 143 ~~G~~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n 199 (498)
+|-... + ...+... .....|..++... ...+..+.+|.|..|-..
T Consensus 81 vwd~~~---~---------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 81 IWKEEN---G---------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEET---T---------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEECCC---C---------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 996411 0 0111111 2345677776553 456667788999999643
No 37
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=72.66 E-value=33 Score=32.57 Aligned_cols=73 Identities=10% Similarity=0.170 Sum_probs=46.7
Q ss_pred ccc-eeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCCeEEEEec
Q psy1173 111 FIP-QTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTS 189 (498)
Q Consensus 111 ~~p-~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~ 189 (498)
+.| ..++.+. |.++++ .+..+++..+|.|.+|-- .... ...... .....+.++.+-....++++.
T Consensus 79 ~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv--~sl~---------~~~~~~-~~~~~v~~i~~~~p~~av~~~ 144 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDL--EELS---------EFRTVT-SFEKPVFQLKNVNNTLVILNS 144 (388)
T ss_dssp CCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEES--SSTT---------CEEEEE-ECSSCEEEEEECSSEEEEEET
T ss_pred ccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEc--hhhh---------ccCccc-eeecceeeEEecCCCEEEEEC
Confidence 345 4455666 999999 777777778999999964 1110 011111 112345666665556788899
Q ss_pred CCcEEEEe
Q psy1173 190 RGNLLTAG 197 (498)
Q Consensus 190 ~g~v~~~G 197 (498)
+|.|+.|-
T Consensus 145 dG~L~v~d 152 (388)
T 1xip_A 145 VNDLSALD 152 (388)
T ss_dssp TSEEEEEE
T ss_pred CCCEEEEE
Confidence 99999994
No 38
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=72.52 E-value=47 Score=28.73 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=10.9
Q ss_pred cCcccccccCCeEEE
Q psy1173 27 VPTLKCKTGGGVVLT 41 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~ 41 (498)
.-+.++++.+|++|+
T Consensus 25 ~p~~i~~~~~g~l~v 39 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYV 39 (270)
T ss_dssp CEEEEEECTTCCEEE
T ss_pred CccceEECCCCCEEE
Confidence 334567788899888
No 39
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=72.41 E-value=32 Score=32.67 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=61.6
Q ss_pred cCcccccccCCeEEEEecCCCCCCCCCCC-------Cccccce-eeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCC
Q psy1173 27 VPTLKCKTGGGVVLTCGQGDTGQLGLGPD-------VMERKTF-ALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDE 98 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~n~~gqlg~g~~-------~~~~~~p-~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~ 98 (498)
..+.+++.....+++.|.+..-.+..-.+ ......| ..++... |..|++ ....+++.+++.|..|=-...
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEESSST
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhh
Confidence 34566677777666666654332211000 0001334 2333333 999999 777777778899999975443
Q ss_pred CCCCCcCCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCC
Q psy1173 99 GALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 99 gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~ 146 (498)
.+.. ........+.++.+-....++++.+|.|++|-.
T Consensus 117 ~~~~-----------~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 117 SEFR-----------TVTSFEKPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp TCEE-----------EEEECSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred hccC-----------ccceeecceeeEEecCCCEEEEECCCCEEEEEc
Confidence 2110 011123345566666656888899999999964
No 40
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=70.86 E-value=68 Score=29.89 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=61.3
Q ss_pred EEEecCceEEEE---ecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecC---CeEEEEEcCCcEEEeCC
Q psy1173 73 EVVVGGMHTVCL---TEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGD---SHSVALLEDGTVYAWGS 146 (498)
Q Consensus 73 ~i~~g~~~~~~l---~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~---~~~~~L~~~G~vy~~G~ 146 (498)
-+++...+..++ ..+|.|..|-....+.+.. ..+........|..++... ...+.-..||.|.+|-.
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 356666665554 3579999998655443311 1122222345677777754 34444567899999975
Q ss_pred cCCCCCccCCCCCCcceecEE-e-cccCCeEEEeccCC---eEEEEecCCcEEEEecC
Q psy1173 147 FRDSHGSMGLKGEGIQKTPLK-L-ESVSGIVKIASGAD---HFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 147 ~~~~~g~lG~~~~~~~~~p~~-v-~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n 199 (498)
....... ....|.. + .....|..++.... ..+.-..+|.|..|-..
T Consensus 112 --~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 112 --PDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp --CTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred --cCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 1111000 0001111 1 23455777765543 44555778999999543
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=67.48 E-value=80 Score=29.39 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=53.1
Q ss_pred cCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceee--eCCCceeEEeecCC--eEEEEEcCCcEEEeCCcCCCCC
Q psy1173 77 GGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTV--NLPKKAVQISAGDS--HSVALLEDGTVYAWGSFRDSHG 152 (498)
Q Consensus 77 g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~--~~~~~i~~i~~g~~--~~~~L~~~G~vy~~G~~~~~~g 152 (498)
.....+.-..+|.|..|-.... .+... .....|..++...+ ..+.-..+|.|++|-... .
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~- 171 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFN-------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--G- 171 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSC-------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C-
T ss_pred CCCEEEEEECCCCEEEEeCCCc-------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC--C-
Confidence 3344445567888888863211 11111 13456777777654 344456789999996511 0
Q ss_pred ccCCCCCCcceecEEe-cccCCeEEEecc--CCeEEEEecCCcEEEEecC
Q psy1173 153 SMGLKGEGIQKTPLKL-ESVSGIVKIASG--ADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 153 ~lG~~~~~~~~~p~~v-~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n 199 (498)
.....+ .....|..++.. ....+....++.|..|-..
T Consensus 172 ----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 172 ----------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp ----------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ----------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 011112 223456666554 3345556778889999543
No 42
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=65.06 E-value=74 Score=28.13 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=16.5
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCcCC
Q psy1173 432 NCVSFAIDSEGVLYGWGMGNGYQLGN 457 (498)
Q Consensus 432 ~~~~~~lt~~g~v~~wG~n~~gqLG~ 457 (498)
..+.+.++.+|+| .|=.+.....|.
T Consensus 243 ~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 243 HPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CceEEEECCCCCE-EEEecCcccccc
Confidence 3357888888886 666666555554
No 43
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=64.98 E-value=80 Score=28.47 Aligned_cols=191 Identities=7% Similarity=-0.013 Sum_probs=97.6
Q ss_pred CCCceeEEeecCC-----eEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccC--CeEEEEec
Q psy1173 118 LPKKAVQISAGDS-----HSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGA--DHFVMLTS 189 (498)
Q Consensus 118 ~~~~i~~i~~g~~-----~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~--~~~~~l~~ 189 (498)
....|..++.... ..+.-..+|.|++|-. ...+ ......+ .....|..++... ...+..+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~--~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV--QDSG---------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEE--CTTS---------CEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEc--CCCC---------ceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3467888888876 2334467899999975 1100 1111112 2345577776543 35556678
Q ss_pred CCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeee--ccc-e-EE-eccCCcEEEEeccCCccc
Q psy1173 190 RGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFT--GVY-N-TF-ISSKGSILAFGLNNYSQL 264 (498)
Q Consensus 190 ~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~--g~~-~-~~-~~~~g~v~~~G~n~~gql 264 (498)
+|.|..|-......+ ........|..+.. ... . .+ ...+|.|+.|-......
T Consensus 107 dg~v~iwd~~~~~~~----------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 163 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAI----------------------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP- 163 (368)
T ss_dssp TSEEEEEETTTTEEE----------------------EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-
T ss_pred CCcEEEEEcCCCCce----------------------eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-
Confidence 899999954321110 01112344555543 222 2 22 56788888885332110
Q ss_pred cccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCC--C
Q psy1173 265 GEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSL--Q 342 (498)
Q Consensus 265 g~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~--~ 342 (498)
...+.. ...+..+.......++.+.++.+..|-....... ...+... .
T Consensus 164 -----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~ 213 (368)
T 3mmy_A 164 -----------------MMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLENQPSE-----------FRRIESPLKH 213 (368)
T ss_dssp -----------------SEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE-----------EEECCCSCSS
T ss_pred -----------------EEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEeccccch-----------hhhccccccC
Confidence 011111 1135555555567777888888888865332110 0111111 1
Q ss_pred CCcEEEEeccCce----eEEEeCCCCEEEEeCCC
Q psy1173 343 DKTITSIACGNCV----SFAIDSEGVLYGWGMGN 372 (498)
Q Consensus 343 ~~~i~~i~~g~~~----~~~lt~~G~v~~wG~n~ 372 (498)
...+..+...... .++-..+|.|..|-...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp CEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred CCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 1234444433333 56667888888887643
No 44
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=62.63 E-value=84 Score=27.89 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=11.7
Q ss_pred ceEEeccCCcEEEEecc
Q psy1173 243 YNTFISSKGSILAFGLN 259 (498)
Q Consensus 243 ~~~~~~~~g~v~~~G~n 259 (498)
.|+++.-+++||..|-.
T Consensus 199 ~~~~~~~~~~i~v~GG~ 215 (301)
T 2vpj_A 199 GAGVALLNDHIYVVGGF 215 (301)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred cceEEEECCEEEEEeCC
Confidence 45554457899999854
No 45
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=62.41 E-value=87 Score=28.00 Aligned_cols=201 Identities=12% Similarity=-0.051 Sum_probs=97.2
Q ss_pred CceeEEeecCC--eEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc--CC-eEEEEecCCcE
Q psy1173 120 KKAVQISAGDS--HSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG--AD-HFVMLTSRGNL 193 (498)
Q Consensus 120 ~~i~~i~~g~~--~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g--~~-~~~~l~~~g~v 193 (498)
..|..++...+ ..++-..+|.|++|-.... .....+..+ .....|..++.. .. ..+.-+.+|.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ----------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETT----------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC----------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 45666666544 3444467899999964110 000111111 334456666543 33 45666778889
Q ss_pred EEEecCCCCccccccccccccccccCcccccCccccc--cccceeeeeec-cceEE-eccCCcEEEEeccCCccccccch
Q psy1173 194 LTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPL--KRKHIDDVFTG-VYNTF-ISSKGSILAFGLNNYSQLGEADS 269 (498)
Q Consensus 194 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~--~~~~i~~i~~g-~~~~~-~~~~g~v~~~G~n~~gqlg~~~~ 269 (498)
+.|-....++. ..+.. ....|..+... ....+ ...++.|+.|-......-.....
T Consensus 82 ~~wd~~~~~~~---------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 82 LKVDLIGSPSF---------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EEECSSSSSSE---------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EEEEeccCCce---------------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccccccc
Confidence 98843111111 01111 13344444433 23333 67788888885432100000000
Q ss_pred hccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEE
Q psy1173 270 EVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSI 349 (498)
Q Consensus 270 ~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i 349 (498)
. .....+. ....|..++...+..++-+.+|.|+.|-....+.. ............|..+
T Consensus 141 --------~-~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~i~~i 199 (342)
T 1yfq_A 141 --------N-LNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD----------NGTIEESGLKYQIRDV 199 (342)
T ss_dssp --------E-SCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC----------CCEEEECSCSSCEEEE
T ss_pred --------C-CeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc----------cceeeecCCCCceeEE
Confidence 0 0000111 23357777777777777788999999975431100 0111111122346666
Q ss_pred eccC---ceeEEEeCCCCEEEEeCCC
Q psy1173 350 ACGN---CVSFAIDSEGVLYGWGMGN 372 (498)
Q Consensus 350 ~~g~---~~~~~lt~~G~v~~wG~n~ 372 (498)
+... ...++-..+|.+..|-...
T Consensus 200 ~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 200 ALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp EECSGGGCEEEEEETTSEEEEEECCT
T ss_pred EECCCCCCEEEEEecCCcEEEEEEcC
Confidence 6543 3445556778888776543
No 46
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=62.11 E-value=1e+02 Score=28.85 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee---CCCceeEEeecCCeEE--EEEcCCcEEEeCCcCCCCC
Q psy1173 78 GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN---LPKKAVQISAGDSHSV--ALLEDGTVYAWGSFRDSHG 152 (498)
Q Consensus 78 ~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~---~~~~i~~i~~g~~~~~--~L~~~G~vy~~G~~~~~~g 152 (498)
....+++--|+.|+.|-.... + .-..+. ....|.+|+...+..+ .-+.||.|.+|-. ...
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg-~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~--~~~- 179 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSG-D-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV--QQQ- 179 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTC-C-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET--TTT-
T ss_pred CCCEEEEEeCCEEEEEECCCC-C-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc--CCC-
Confidence 345677777999999974321 1 111111 2345788887655443 3467899999964 110
Q ss_pred ccCCCCCCcceecEEe-cccCCeEEEeccCCeEEEEecCCcEEEEe
Q psy1173 153 SMGLKGEGIQKTPLKL-ESVSGIVKIASGADHFVMLTSRGNLLTAG 197 (498)
Q Consensus 153 ~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 197 (498)
.....+ .....+..++......+.-..++.++.|-
T Consensus 180 ----------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 180 ----------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp ----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ----------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 011111 12334555655555555566777777774
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.75 E-value=1.6e+02 Score=30.46 Aligned_cols=228 Identities=7% Similarity=0.004 Sum_probs=109.8
Q ss_pred CCcEEEEecCce--EEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC--eEEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVGGMH--TVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS--HSVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g~~~--~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~L~~~G~vy~~ 144 (498)
..|..|+..... .++-..+|.|..|-..... ...........|..++...+ ..+.-..+|.|++|
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 456666665433 3344568888888643211 11111113445666665443 44555678999999
Q ss_pred CCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccCC--eEEEEecCCcEEEEecCCCCccccccccccccccccCcc
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGAD--HFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMS 221 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~ 221 (498)
-. ... .....+ .....|..++.... ..+..+.+|.|..|-......+
T Consensus 83 ~~--~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~----------------- 132 (814)
T 3mkq_A 83 NY--NTG-----------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL----------------- 132 (814)
T ss_dssp ET--TTC-----------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE-----------------
T ss_pred EC--CCC-----------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE-----------------
Confidence 64 111 011111 23345666665433 4555667888888853221110
Q ss_pred cccCccccccccceeeeeecc---ceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEe
Q psy1173 222 FLEPGEVPLKRKHIDDVFTGV---YNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLA 297 (498)
Q Consensus 222 ~~~p~~i~~~~~~i~~i~~g~---~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~ 297 (498)
...+......+..++... ...+ ...+|.|+.|-..... ....+.......+..++
T Consensus 133 ---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~------------------~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 133 ---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST------------------PNFTLTTGQERGVNYVD 191 (814)
T ss_dssp ---EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS------------------CSEEEECCCTTCCCEEE
T ss_pred ---EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------ceeEEecCCCCCEEEEE
Confidence 001111234455555433 2223 6778999998643211 11111111112233333
Q ss_pred c----CcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCc--eeEEEeCCCCEEEEeCC
Q psy1173 298 S----GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNC--VSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 298 ~----g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~G~v~~wG~n 371 (498)
. .....++-..+|.|..|-...... ...+.. ....|..++.... ..++-..+|.|+.|-..
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC------------VATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTTEE------------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCcE------------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 2 334555567788888886432110 111111 1234666655443 34444567888888654
No 48
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=60.52 E-value=28 Score=31.21 Aligned_cols=17 Identities=12% Similarity=-0.097 Sum_probs=11.8
Q ss_pred ceEEeccCCcEEEEecc
Q psy1173 243 YNTFISSKGSILAFGLN 259 (498)
Q Consensus 243 ~~~~~~~~g~v~~~G~n 259 (498)
.|+++.-+++||..|-.
T Consensus 197 ~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 197 GAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred cccEEEECCEEEEECCC
Confidence 45554557899999853
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=60.44 E-value=1.2e+02 Score=28.83 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=102.0
Q ss_pred CCCcEEEEecCc-eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecC----CeEEEEEcCCcE
Q psy1173 68 LDNVVEVVVGGM-HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGD----SHSVALLEDGTV 141 (498)
Q Consensus 68 ~~~i~~i~~g~~-~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~----~~~~~L~~~G~v 141 (498)
...|..++.... ..+.-..||.|..|-..... ....+. ....|..++... ...+.-..+|.|
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 356777876544 44455688999999753211 111111 334566665542 345556788999
Q ss_pred EEeCCcCCCCCccCCCCCCcc---------eec--EEe--cccCCeEEEeccCCeEEEEecCCcEEEEecCCCCcccccc
Q psy1173 142 YAWGSFRDSHGSMGLKGEGIQ---------KTP--LKL--ESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRIT 208 (498)
Q Consensus 142 y~~G~~~~~~g~lG~~~~~~~---------~~p--~~v--~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~ 208 (498)
++|-... ............ ..| ... .....+..++......+.-..+|.|..|-......+.
T Consensus 230 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--- 304 (464)
T 3v7d_B 230 HVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY--- 304 (464)
T ss_dssp EEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE---
T ss_pred EEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---
Confidence 9997521 111100000000 000 111 2334566676666677777888999998543211100
Q ss_pred ccccccccccCcccccCccccccccceeeeeecc--ceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceee
Q psy1173 209 QRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGV--YNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLI 285 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i 285 (498)
.+......+..+.... ...+ ...+|.|+.|-.... .....+
T Consensus 305 ------------------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------------------~~~~~~ 348 (464)
T 3v7d_B 305 ------------------ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------------------ELMYTL 348 (464)
T ss_dssp ------------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------------------EEEEEE
T ss_pred ------------------EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------cEEEEE
Confidence 0011123344444322 2233 667888888853221 001111
Q ss_pred cccCCCcEEEEecCcceeEEEecCCcEEEEecCC
Q psy1173 286 KSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHD 319 (498)
Q Consensus 286 ~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~ 319 (498)
. .....|..++....+.+.-..||.|..|-...
T Consensus 349 ~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 349 Q-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp C-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred e-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 1 12234777777777777788999999997543
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=58.76 E-value=1.4e+02 Score=29.33 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCcEEEEec-CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeC-----CCceeEEee-cCCeEEEEEcCCcE
Q psy1173 69 DNVVEVVVG-GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNL-----PKKAVQISA-GDSHSVALLEDGTV 141 (498)
Q Consensus 69 ~~i~~i~~g-~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~-----~~~i~~i~~-g~~~~~~L~~~G~v 141 (498)
..|..++.. ..+.+....||.|..|-......+ ..+.. ...+..+.. .....++-..+|.|
T Consensus 254 ~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 254 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCV------------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321 (615)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE------------EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred CceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE------------EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCE
Confidence 457777664 444455567889999975432110 11111 123333333 45566667789999
Q ss_pred EEeCCcCCCCCccCCCCCCcceecEEe--cccCCeEEEeccCCeEEEEecCCcEEEEecC
Q psy1173 142 YAWGSFRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIASGADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 142 y~~G~~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n 199 (498)
+.|-. .. ..+... .....|..++. .. .+..+.+|.|..|-..
T Consensus 322 ~~~d~--~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 322 NFYEL--GH------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEET--TE------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred EEEEC--CC------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 99964 10 111111 33456888888 66 6777889999998543
No 51
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=58.55 E-value=1.7e+02 Score=30.18 Aligned_cols=107 Identities=10% Similarity=-0.012 Sum_probs=59.3
Q ss_pred CCcEEEEec--CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCe--EEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVG--GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSH--SVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g--~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~--~~~L~~~G~vy~~ 144 (498)
..|..++.. ....++...+|.|..|-..... ...........|..++...+. .+.-..+|.|.+|
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 446665554 3445555678999999754321 111111234567777766554 4444678999999
Q ss_pred CCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccC---CeEEEEecCCcEEEEec
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGA---DHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~ 198 (498)
-... . ......+ .....|..++... ...+..+.+|.|..|-.
T Consensus 125 ~~~~--~----------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 125 NWEN--N----------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp EGGG--T----------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred ECCC--C----------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 6410 0 0111111 2345577777643 34555677899999954
No 52
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=58.07 E-value=1e+02 Score=27.56 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred CCCceeEEeecCCe-EEEEEc-----CCcEEEeCCcCCCCCccCCCCCCcceecE-EecccCCeEEEeccC-----CeEE
Q psy1173 118 LPKKAVQISAGDSH-SVALLE-----DGTVYAWGSFRDSHGSMGLKGEGIQKTPL-KLESVSGIVKIASGA-----DHFV 185 (498)
Q Consensus 118 ~~~~i~~i~~g~~~-~~~L~~-----~G~vy~~G~~~~~~g~lG~~~~~~~~~p~-~v~~~~~i~~i~~g~-----~~~~ 185 (498)
....|.+++..... .++... +|.|++|-. .. + ...+. .......|..++... ...+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~--~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI--QH-G---------DLKLLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE--CS-S---------SEEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC--CC-C---------cccceeeecccCcEEEEEEcCCCCCCceEE
Confidence 44578888877644 333333 789999964 10 0 01111 123455677777655 3455
Q ss_pred EEecCCcEEEEecC
Q psy1173 186 MLTSRGNLLTAGCP 199 (498)
Q Consensus 186 ~l~~~g~v~~~G~n 199 (498)
.-..+|.|..|-..
T Consensus 85 ~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 85 TGDFGGNLHIWNLE 98 (357)
T ss_dssp EEETTSCEEEECTT
T ss_pred EecCCCeEEEEeCC
Confidence 56778999999543
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=54.55 E-value=1.2e+02 Score=27.20 Aligned_cols=137 Identities=7% Similarity=0.013 Sum_probs=74.6
Q ss_pred ccccccCCeEEEEecCCCCCCCCCCCCccccceeee---cCCCCcEEEEecCc------eEEEEecCCcEEEeeCCCCCC
Q psy1173 30 LKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALV---EDLDNVVEVVVGGM------HTVCLTEDGKVYTWGCNDEGA 100 (498)
Q Consensus 30 ~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v---~~~~~i~~i~~g~~------~~~~l~~~g~l~~wG~n~~gq 100 (498)
.++-..++.|.+|-......+ ...... .....|..++.... ..+.-..||.|..|-....
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-- 105 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEI---------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-- 105 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCE---------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--
T ss_pred EEEECCCCEEEEEEcCCCcEE---------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--
Confidence 455556778888875432111 111111 12245766666544 4445568889999964321
Q ss_pred CCCcCCCCCcccceeeeCCCceeEEeecC---CeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe----cccCC
Q psy1173 101 LGREAEGDSEFIPQTVNLPKKAVQISAGD---SHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL----ESVSG 173 (498)
Q Consensus 101 lg~~~~~~~~~~p~~~~~~~~i~~i~~g~---~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v----~~~~~ 173 (498)
............|..++... ...+.-..+|.|++|-. .. + .....+ .....
T Consensus 106 ---------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~-~----------~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 106 ---------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QT-D----------TLVAIFGGVEGHRDE 163 (366)
T ss_dssp ---------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET--TT-T----------EEEEEECSTTSCSSC
T ss_pred ---------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe--ec-C----------eEEEEecccccccCc
Confidence 11111112456788887754 34555567899999964 11 0 111111 23445
Q ss_pred eEEEecc--CCeEEEEecCCcEEEEecC
Q psy1173 174 IVKIASG--ADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 174 i~~i~~g--~~~~~~l~~~g~v~~~G~n 199 (498)
|..++.. ....+....+|.|..|-..
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 7777654 3355566788999999654
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=54.15 E-value=1.4e+02 Score=27.63 Aligned_cols=72 Identities=7% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCceeEEeecCCeE--EEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc---CCeEEEEecCCc
Q psy1173 119 PKKAVQISAGDSHS--VALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG---ADHFVMLTSRGN 192 (498)
Q Consensus 119 ~~~i~~i~~g~~~~--~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g---~~~~~~l~~~g~ 192 (498)
...|..++...+.. +.-..+|.|++|-......+ ......+ .....|..++.. ....+.-..++.
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence 45677777655443 33457899999975110000 0011111 223456666554 345556667888
Q ss_pred EEEEecC
Q psy1173 193 LLTAGCP 199 (498)
Q Consensus 193 v~~~G~n 199 (498)
|+.|-..
T Consensus 138 v~iwd~~ 144 (416)
T 2pm9_A 138 IFIWDMN 144 (416)
T ss_dssp EEBCBTT
T ss_pred EEEEECC
Confidence 9988543
No 55
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=52.11 E-value=85 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=10.6
Q ss_pred cccCCeEEEEecCC
Q psy1173 33 KTGGGVVLTCGQGD 46 (498)
Q Consensus 33 ~~~~g~v~~wG~n~ 46 (498)
...+++||++|-..
T Consensus 59 ~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 59 VSLHDRIYVIGGYD 72 (301)
T ss_dssp EEETTEEEEECCBC
T ss_pred EEECCEEEEEcCCC
Confidence 34678999999754
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=51.07 E-value=1.5e+02 Score=27.25 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=37.8
Q ss_pred CcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC--eEEEEEcCCcEEEeC
Q psy1173 70 NVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS--HSVALLEDGTVYAWG 145 (498)
Q Consensus 70 ~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~L~~~G~vy~~G 145 (498)
.|..++.... ..+.-..+|.|..|- ..++ ...........|..++...+ ..+....+|.|+.|-
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 6777776543 444455788899885 1111 11111113456777776544 445556789999996
Q ss_pred C
Q psy1173 146 S 146 (498)
Q Consensus 146 ~ 146 (498)
.
T Consensus 178 ~ 178 (425)
T 1r5m_A 178 V 178 (425)
T ss_dssp T
T ss_pred C
Confidence 4
No 57
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=51.07 E-value=87 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=12.3
Q ss_pred cCcccccccCCeEEEEec
Q psy1173 27 VPTLKCKTGGGVVLTCGQ 44 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~ 44 (498)
+.+..+...+++||++|-
T Consensus 36 r~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 36 KNHVSLVTKENQVFVAGG 53 (315)
T ss_dssp SSEEEEECTTCCEEEEEE
T ss_pred ccceEEEEECCEEEEEcC
Confidence 333334456899999996
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=50.59 E-value=1.6e+02 Score=27.49 Aligned_cols=139 Identities=6% Similarity=-0.034 Sum_probs=70.7
Q ss_pred CcccccccCCeEEEEecCCCCCCCCCCCCccccceeee-cCCCCcEEEEecC--ceEEEEecCCcEEEeeCCCCCCCCCc
Q psy1173 28 PTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALV-EDLDNVVEVVVGG--MHTVCLTEDGKVYTWGCNDEGALGRE 104 (498)
Q Consensus 28 ~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v-~~~~~i~~i~~g~--~~~~~l~~~g~l~~wG~n~~gqlg~~ 104 (498)
.+.+++--++.||.|=... | .......+ .....|..|+... .+.+.-..||.|..|-......
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g---------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~---- 181 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-G---------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---- 181 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-C---------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----
T ss_pred CCEEEEEeCCEEEEEECCC-C---------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE----
Confidence 3456666788899996432 1 11111111 1234578887654 3444446889999997543211
Q ss_pred CCCCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEec--cCC
Q psy1173 105 AEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS--GAD 182 (498)
Q Consensus 105 ~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~--g~~ 182 (498)
..........+..++......+.-..++.++.|-... .. ............+..+.. ...
T Consensus 182 -------~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~--~~---------~~~~~~~~h~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 182 -------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRV--AE---------HHVATLSGHSQEVCGLRWAPDGR 243 (420)
T ss_dssp -------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS--SS---------CEEEEEECCSSCEEEEEECTTSS
T ss_pred -------EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecc--cc---------eeeEEecccccceeeeeecCCCC
Confidence 1111112345666666666666667788888885310 00 000001111223333333 334
Q ss_pred eEEEEecCCcEEEEec
Q psy1173 183 HFVMLTSRGNLLTAGC 198 (498)
Q Consensus 183 ~~~~l~~~g~v~~~G~ 198 (498)
..+....|+.+..|-.
T Consensus 244 ~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 244 HLASGGNDNLVNVWPS 259 (420)
T ss_dssp EEEEEETTSCEEEEES
T ss_pred eeeeeeccccceEEee
Confidence 5556677888888854
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=49.55 E-value=1.4e+02 Score=26.39 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=58.2
Q ss_pred ecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCeE-EEEEcCCcEEEeCCcCCCCCcc
Q psy1173 76 VGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHS-VALLEDGTVYAWGSFRDSHGSM 154 (498)
Q Consensus 76 ~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~-~~L~~~G~vy~~G~~~~~~g~l 154 (498)
.+.-..+++..||+++.++......+..... ..............|..++...+.. ++...+|.|++|-. .....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~--~~~~~- 84 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIP-RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDI--SHPGN- 84 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEET--TSTTC-
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccC-CccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEEC--CCCCc-
Confidence 3445677888999999888654432221111 1111112223456777777765443 33345899999965 11110
Q ss_pred CCCCCCcceecEEe-cccCCeEEEeccCC--eEEEEecCCcEEEEec
Q psy1173 155 GLKGEGIQKTPLKL-ESVSGIVKIASGAD--HFVMLTSRGNLLTAGC 198 (498)
Q Consensus 155 G~~~~~~~~~p~~v-~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~ 198 (498)
......... .....|..++.... ..++...+|.|..|-.
T Consensus 85 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 85 -----KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp -----CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred -----eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 000000000 23344666655433 4455567888988854
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=49.14 E-value=1.5e+02 Score=26.55 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=57.8
Q ss_pred CCCCcEEEEecCc-----eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEee--------cCCeEE
Q psy1173 67 DLDNVVEVVVGGM-----HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISA--------GDSHSV 133 (498)
Q Consensus 67 ~~~~i~~i~~g~~-----~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~--------g~~~~~ 133 (498)
....|..++.... ..+.-..+|.|..|-.....+ ...........|..+.. .....+
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------CSEEECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------cEEEEEecccceEEEeeccccccCCCccEEE
Confidence 3456888887653 344445789999997543210 01111113345666632 233455
Q ss_pred EEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEe------ccCCeEEEEecCCcEEEEec
Q psy1173 134 ALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIA------SGADHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 134 ~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~------~g~~~~~~l~~~g~v~~~G~ 198 (498)
.-..+|.|++|-... ... ......+..-.....+..+. ......+.-..+|.|+.|-.
T Consensus 134 ~~~~d~~i~vwd~~~--~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQ--KDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp EEETTSCEEEECTTS--CSS-----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred EEeCCCeEEEEeCCC--CCC-----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 556889999997511 100 00000000000122455555 23345555677889999954
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=47.51 E-value=1.7e+02 Score=26.85 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=38.1
Q ss_pred ceeEEeecCCe--EEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc--CCeEEEEecCCcEEE
Q psy1173 121 KAVQISAGDSH--SVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG--ADHFVMLTSRGNLLT 195 (498)
Q Consensus 121 ~i~~i~~g~~~--~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g--~~~~~~l~~~g~v~~ 195 (498)
.|..++...+. .+.-..+|.|++|-. . + .....+ .....|..++.. ....+....++.|..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~--~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--T--G----------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--T--S----------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--C--C----------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 67777776543 444467899999952 1 1 011111 223456666654 334566677899999
Q ss_pred EecC
Q psy1173 196 AGCP 199 (498)
Q Consensus 196 ~G~n 199 (498)
|-..
T Consensus 176 wd~~ 179 (425)
T 1r5m_A 176 WNVI 179 (425)
T ss_dssp EETT
T ss_pred EECC
Confidence 9654
No 62
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=47.01 E-value=1e+02 Score=24.25 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=58.1
Q ss_pred cccceeeeeecc-ceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecC-cceeEEEe
Q psy1173 231 KRKHIDDVFTGV-YNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASG-QHHSLALN 307 (498)
Q Consensus 231 ~~~~i~~i~~g~-~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~lt 307 (498)
......++.|.. .+.+ +..||+|-+....... ..--++.... ..++.|.|- ....+++.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~~-----------------~s~lei~sv~-~G~V~L~g~~sg~yL~mn 89 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDT-----------------HIQFQISPEG-NGEVLLKSTETGQYLRIN 89 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTCG-----------------GGCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCCC-----------------ceEEEEEEcc-CCEEEEEEecCCEEEeEC
Confidence 366778888876 4445 8889999876543110 1111111111 136677764 56788999
Q ss_pred cCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEe-ccCceeEEEeCCCCEEE
Q psy1173 308 SEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA-CGNCVSFAIDSEGVLYG 367 (498)
Q Consensus 308 ~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~-~g~~~~~~lt~~G~v~~ 367 (498)
.+|+||+--. ..+.. ...++...... .+.|. .-....++++++|++|.
T Consensus 90 ~~G~l~Gs~~----------~t~ec-sflEi~~en~y-~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 90 PDGTVDGTRD----------RSDTH-IQFQISPEGNG-EVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp TTSBEEEECC----------TTCGG-GCEEEEECSTT-CEEEEETTTCCEEEECTTSBEEE
T ss_pred CCCCEeeccc----------CCCCc-eEEEEEeecCc-EEEEEEecCCEEEEECCCcCCcc
Confidence 9999997421 11111 11121111111 22222 23345899999999985
No 63
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=44.43 E-value=1.6e+02 Score=25.55 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=13.4
Q ss_pred cCcccccccCCeEEEEec
Q psy1173 27 VPTLKCKTGGGVVLTCGQ 44 (498)
Q Consensus 27 ~~~~~~~~~~g~v~~wG~ 44 (498)
.-+.++++.+|.||+-..
T Consensus 21 ~p~~i~~d~~g~l~v~~~ 38 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQH 38 (300)
T ss_dssp CEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcC
Confidence 445577888999999764
No 64
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=44.26 E-value=1.9e+02 Score=26.37 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=19.3
Q ss_pred cCCeEEEecc-CCeEEEEecCCcEEEEecC
Q psy1173 171 VSGIVKIASG-ADHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 171 ~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n 199 (498)
...|..++.. ....+.-..+|.|..|-..
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELD 111 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEEC
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEecc
Confidence 4457777754 3455666788999999543
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=43.02 E-value=2e+02 Score=26.27 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=36.5
Q ss_pred CCCceeEEeecCCeE-EEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEeccCC--eEEEEecCCcEE
Q psy1173 118 LPKKAVQISAGDSHS-VALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGAD--HFVMLTSRGNLL 194 (498)
Q Consensus 118 ~~~~i~~i~~g~~~~-~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~g~~--~~~~l~~~g~v~ 194 (498)
....|.+++...+.. ++-..+|.|.+|-... ...+. ........-...|..++.... ..+.-..++.|.
T Consensus 93 ~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~--~~~~~------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILVASDSGAVELWEILE--KESLL------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CSSCEEEEEEETTTEEEEEETTSCEEEC----------C------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCCCEEEEEEcCCCCEEEEECCCEEEEeeccc--cceeE------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 445677777655443 4446779999995411 00000 000011112345666665433 444556788898
Q ss_pred EEec
Q psy1173 195 TAGC 198 (498)
Q Consensus 195 ~~G~ 198 (498)
.|-.
T Consensus 165 iwd~ 168 (357)
T 4g56_B 165 VWDL 168 (357)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8843
No 66
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=42.47 E-value=1.8e+02 Score=25.65 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=11.4
Q ss_pred ceeEEEecCCcEEEEec
Q psy1173 301 HHSLALNSEGKIYAFGR 317 (498)
Q Consensus 301 ~~~~~lt~~G~v~~~G~ 317 (498)
.|+++.. +++||.+|-
T Consensus 197 ~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cccEEEE-CCEEEEECC
Confidence 4555554 789999984
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=41.55 E-value=3.9e+02 Score=29.30 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.4
Q ss_pred CCcEEEEecCc--eEEEEecCCcEEEeeC
Q psy1173 69 DNVVEVVVGGM--HTVCLTEDGKVYTWGC 95 (498)
Q Consensus 69 ~~i~~i~~g~~--~~~~l~~~g~l~~wG~ 95 (498)
..|..++.... +.+....||.+..|-.
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 45777776543 4445557888888863
No 68
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=39.51 E-value=1.9e+02 Score=25.04 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=11.8
Q ss_pred eeEEEeCCCCEEEEeC
Q psy1173 355 VSFAIDSEGVLYGWGM 370 (498)
Q Consensus 355 ~~~~lt~~G~v~~wG~ 370 (498)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4677788888887664
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=37.95 E-value=2.3e+02 Score=25.72 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=61.3
Q ss_pred CCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeee-cCCCCcEEEEecCc---------eEEEEe
Q psy1173 16 PSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALV-EDLDNVVEVVVGGM---------HTVCLT 85 (498)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v-~~~~~i~~i~~g~~---------~~~~l~ 85 (498)
....|..++......+.-..+|.|++|-...... .........+ .....|..++.... +.+...
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 3445555555554445556889999998653210 0011111222 23345777766543 344445
Q ss_pred cCCcEEEeeCCCCCCCCCcCCCCCcccceeee-C-----CCceeEEeec----C--Ce-EEEEEcCCcEEEeCC
Q psy1173 86 EDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-L-----PKKAVQISAG----D--SH-SVALLEDGTVYAWGS 146 (498)
Q Consensus 86 ~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~-----~~~i~~i~~g----~--~~-~~~L~~~G~vy~~G~ 146 (498)
.+|.|+.|-...... ........+. . ...|..++.. . .. .+.-..+|.|++|-.
T Consensus 89 ~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 89 FSGDLLFYRITREDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTSCEEEEEEEECTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEccCCcc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 789999986432210 0000012222 2 2567777776 3 33 444568899999965
No 70
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=37.15 E-value=73 Score=28.55 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=11.2
Q ss_pred ceEEEEecCCcEEEeeC
Q psy1173 79 MHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 79 ~~~~~l~~~g~l~~wG~ 95 (498)
.|++++. +++||++|-
T Consensus 161 ~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEeC
Confidence 4555444 789999985
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=37.05 E-value=2.1e+02 Score=25.02 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCe--EEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSH--SVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~--~~~L~~~G~vy~~ 144 (498)
..|..++.... +.+.-..||.|..|...... ...........|..++...+. .+.-..+|.|.+|
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45777776543 33444578999999753211 111111133457777765543 3444578999999
Q ss_pred CCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccC--CeEEEEecCCcEEEEec
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGA--DHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~ 198 (498)
-. ... .....+ .....|..+.... ...+.-..++.|..|-.
T Consensus 93 d~--~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 93 DV--SSG-----------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp ET--TTC-----------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred EC--CCC-----------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 64 110 001111 1233455444433 34455567888888853
No 72
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=36.71 E-value=2e+02 Score=24.49 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=11.7
Q ss_pred ceeEEEeCCCCEEEEeC
Q psy1173 354 CVSFAIDSEGVLYGWGM 370 (498)
Q Consensus 354 ~~~~~lt~~G~v~~wG~ 370 (498)
-..++++.+|++|+-..
T Consensus 236 p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 236 PLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEEECTTCCEEEEEG
T ss_pred ceeEEECCCCCEEEEEC
Confidence 35677777888877654
No 73
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=35.98 E-value=2.5e+02 Score=25.39 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEE--eccCCcEEEEec
Q psy1173 181 ADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF--ISSKGSILAFGL 258 (498)
Q Consensus 181 ~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~--~~~~g~v~~~G~ 258 (498)
....+++|++|.+--.-...+.....+.. -..-..+...+.-+..+.|.....+ +++.|++|..-.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~------------g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~ 75 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGK------------GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINA 75 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCC------------CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCC------------CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEH
Q ss_pred cCCccccccchhccccCCceeecc--eeecccCCCcEEEEecC-----cceeEEEecCCcEEEEecCCCCcccccCCCCC
Q psy1173 259 NNYSQLGEADSEVQKSGNTCFFTP--HLIKSLSDKKFTMLASG-----QHHSLALNSEGKIYAFGRHDYGRLGLKNVSEP 331 (498)
Q Consensus 259 n~~gqlg~~~~~~~~~~~~~~~~p--~~i~~~~~~~i~~i~~g-----~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~ 331 (498)
......+.... -.| ..++..++.+|+.+... ..+.+++|++|.++..-...+ ....
T Consensus 76 ~~ip~~~r~~~----------G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~-------~~~r 138 (312)
T 1suu_A 76 YEIKDSSRASK----------GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDF-------KAVK 138 (312)
T ss_dssp GGSCC-----------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG-------CC--
T ss_pred HHCCCCCccCC----------CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHh-------hccC
Q ss_pred ccCCcccCCCCCCcEEEEec--cCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCC
Q psy1173 332 VTEPTPIPSLQDKTITSIAC--GNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSE 409 (498)
Q Consensus 332 ~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~ 409 (498)
..--..+....+..++.+.. +..+.+++|++|.+..+-....-..|...
T Consensus 139 ~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~----------------------------- 189 (312)
T 1suu_A 139 SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT----------------------------- 189 (312)
T ss_dssp --CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-----------------------------
T ss_pred CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-----------------------------
Q ss_pred CCCCCeecCCCCCCcEEEEEe--CCceEEEEeCCCCEEEEeCCCCCCcCCCCC
Q psy1173 410 PVTEPTPIPSLQDKTITSIAC--GNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 460 (498)
Q Consensus 410 ~~~~p~~v~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~ 460 (498)
.=-..+....+..++.+.. ...+.++++++|.+...--.++-..+.+..
T Consensus 190 --~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~k 240 (312)
T 1suu_A 190 --QGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGAT 240 (312)
T ss_dssp --CCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred --CCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCC
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=35.77 E-value=2.4e+02 Score=25.24 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=61.7
Q ss_pred CCCcEEEEec----CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC----eEEEEEcCC
Q psy1173 68 LDNVVEVVVG----GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS----HSVALLEDG 139 (498)
Q Consensus 68 ~~~i~~i~~g----~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~----~~~~L~~~G 139 (498)
...|..++.. ....+....||.|..|-..... .............|..++.... ..+.-..+|
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc---------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 3568888764 4455566688999999743210 0001111113456777777654 455667889
Q ss_pred cEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc---------------CCeEEEEecCCcEEEEec
Q psy1173 140 TVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG---------------ADHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 140 ~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g---------------~~~~~~l~~~g~v~~~G~ 198 (498)
.|++|-... .. ...+..+ .....|..++.. ....+..+.+|.|+.|-.
T Consensus 126 ~i~v~d~~~--~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 126 KVSVVEFKE--NG---------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp EEEEEECCT--TS---------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred cEEEEecCC--CC---------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 999997511 10 0111111 223446666544 345566678899999843
No 75
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=35.68 E-value=1.4e+02 Score=26.47 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=10.6
Q ss_pred cccCCeEEEEecCC
Q psy1173 33 KTGGGVVLTCGQGD 46 (498)
Q Consensus 33 ~~~~g~v~~wG~n~ 46 (498)
..-+++||++|-..
T Consensus 52 ~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 52 VFWDNVVYILGGSQ 65 (306)
T ss_dssp EEETTEEEEECCBS
T ss_pred EEECCEEEEEeCCC
Confidence 34688999999654
No 76
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.08 E-value=2.4e+02 Score=24.96 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=110.4
Q ss_pred CCCCcEEEEecC--ceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeec---CCeEEEEEcCCcE
Q psy1173 67 DLDNVVEVVVGG--MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAG---DSHSVALLEDGTV 141 (498)
Q Consensus 67 ~~~~i~~i~~g~--~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~L~~~G~v 141 (498)
..+.+..+.... .+.+++|++|++|.---...... ... . . ++..++|+.+.+. ....+++|++|.+
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~--~~~-~-----l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG--SKV-S-----L-KSREEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS--EEC-C-----C-SSTTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC--ccc-c-----c-CCCCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 345555555544 45789999999997542211000 000 0 1 4456788887662 2467889999988
Q ss_pred EEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEec--cCCeEEEEecCCcEEEEecCCCCccccccccccccccccC
Q psy1173 142 YAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS--GADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRG 219 (498)
Q Consensus 142 y~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 219 (498)
.-.-. ..+.+ .. .-..-..+.....++.+.. +..+.+++|++|++|.+-....-..|....-..
T Consensus 93 Kr~~l--~~~~~---~~--~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~------- 158 (276)
T 3no0_A 93 KKIPL--AEFEY---KA--QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ------- 158 (276)
T ss_dssp EEEEG--GGTTT---CS--TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-------
T ss_pred EEEEH--HHhhh---hc--CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-------
Confidence 87753 11110 00 0111122233445555443 455788999999999986554433332211100
Q ss_pred cccccCccccccccceeeeeec--cceEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEE
Q psy1173 220 MSFLEPGEVPLKRKHIDDVFTG--VYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTML 296 (498)
Q Consensus 220 ~~~~~p~~i~~~~~~i~~i~~g--~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i 296 (498)
. ..+. ....+..+... ....+ ++++|...-.-..++.....+.... ..+ .++.+++.+
T Consensus 159 --~---i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv-----------~~i--~~~~~lv~~ 219 (276)
T 3no0_A 159 --G---IKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGT-----------EVS--GTKDTLVDL 219 (276)
T ss_dssp --C---CCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCE-----------ECC--CSSSCEEEE
T ss_pred --E---EccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcce-----------EEE--cCCCcEEEE
Confidence 0 0011 12334443322 12333 7888887776655543332211100 000 122234433
Q ss_pred e--cCcceeEEEecCCcEEE--EecCCCCccc
Q psy1173 297 A--SGQHHSLALNSEGKIYA--FGRHDYGRLG 324 (498)
Q Consensus 297 ~--~g~~~~~~lt~~G~v~~--~G~n~~gqlg 324 (498)
. .+....+++|++|++.. +-.+..-.+|
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 2 35678889999999988 8655443333
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=34.86 E-value=2.4e+02 Score=25.03 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCCcEEEEec--CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCCe--EEEEEcC-----
Q psy1173 68 LDNVVEVVVG--GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSH--SVALLED----- 138 (498)
Q Consensus 68 ~~~i~~i~~g--~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~~--~~~L~~~----- 138 (498)
...|..++.. ..+.+....||.|..|-..... .-..+.....+..++...+. .++...+
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ------------CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------EEEEeecCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 3467777765 3445555688999999743221 11122245566666665443 3344455
Q ss_pred CcEEEeCC
Q psy1173 139 GTVYAWGS 146 (498)
Q Consensus 139 G~vy~~G~ 146 (498)
|.|++|-.
T Consensus 142 g~i~~~d~ 149 (369)
T 3zwl_B 142 GSINIYEI 149 (369)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 88888865
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=34.14 E-value=2.7e+02 Score=25.27 Aligned_cols=250 Identities=8% Similarity=-0.034 Sum_probs=117.7
Q ss_pred CCCcEEEEec---CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC-----eEEEEEcCC
Q psy1173 68 LDNVVEVVVG---GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS-----HSVALLEDG 139 (498)
Q Consensus 68 ~~~i~~i~~g---~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~-----~~~~L~~~G 139 (498)
...|..++.. ....+....+|.|..|-.... .....+.....+..+..... ..++-..+|
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL------------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT------------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC------------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 3567888764 345556667999999974321 11122224455555555432 455557889
Q ss_pred cEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEeccCC---eEEEEecCCcEEEEecCCCCccccccccccccc
Q psy1173 140 TVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASGAD---HFVMLTSRGNLLTAGCPEQGQLGRITQRSASRN 215 (498)
Q Consensus 140 ~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~ 215 (498)
.|++|-... .. ....+ .....|..++.... ..+....+|.|..|-.......-.........
T Consensus 167 ~v~~~d~~~--~~-----------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 232 (408)
T 4a11_B 167 KVQLCDLKS--GS-----------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK- 232 (408)
T ss_dssp SEEEEESSS--SC-----------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC-
T ss_pred eEEEEeCCC--cc-----------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc-
Confidence 999996511 10 01112 23345666665433 24566788999999654322110000000000
Q ss_pred cccCcccccCccccccccceeeeeeccc--eEE-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCc
Q psy1173 216 ARRGMSFLEPGEVPLKRKHIDDVFTGVY--NTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKK 292 (498)
Q Consensus 216 ~~~~~~~~~p~~i~~~~~~i~~i~~g~~--~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~ 292 (498)
...............|..++.... ..+ ...+|.++.|-........... ............
T Consensus 233 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~ 296 (408)
T 4a11_B 233 ----KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY------------GKVCNNSKKGLK 296 (408)
T ss_dssp ----SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC------------CCCCCCCSSCCC
T ss_pred ----cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc------------ccccccccccce
Confidence 000000011112445566554333 233 6778888888654322111000 000000011112
Q ss_pred EEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEeccCc--eeEEEeCCCCEEEEeC
Q psy1173 293 FTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNC--VSFAIDSEGVLYGWGM 370 (498)
Q Consensus 293 i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~G~v~~wG~ 370 (498)
+..........++...++.|+.|-......+. .+.. ....|..++.... ..+.-..+|.|..|-.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------------~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT------------MLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCCEEE------------EECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCccee------------eecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 22222334556666778899998753321111 1111 1134666555433 3444456788888875
Q ss_pred CC
Q psy1173 371 GN 372 (498)
Q Consensus 371 n~ 372 (498)
..
T Consensus 364 ~~ 365 (408)
T 4a11_B 364 SL 365 (408)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=33.56 E-value=2.9e+02 Score=25.58 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=40.3
Q ss_pred CCcEEEEecC-ce--EEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC--eEEEEEcCCcEEE
Q psy1173 69 DNVVEVVVGG-MH--TVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS--HSVALLEDGTVYA 143 (498)
Q Consensus 69 ~~i~~i~~g~-~~--~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~L~~~G~vy~ 143 (498)
..|..|+... .. .+.-..||.|..|-..... ................|..++...+ ..+.-..||.|.+
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------VGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------TTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccc------cCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 5677877765 33 3333478888888643200 0000001112234567888877653 3455567899999
Q ss_pred eCC
Q psy1173 144 WGS 146 (498)
Q Consensus 144 ~G~ 146 (498)
|-.
T Consensus 138 wd~ 140 (437)
T 3gre_A 138 LKV 140 (437)
T ss_dssp EEE
T ss_pred EEe
Confidence 954
No 80
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=31.98 E-value=4.5e+02 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=12.1
Q ss_pred eEEEEeCCCCEEEEeCC
Q psy1173 434 VSFAIDSEGVLYGWGMG 450 (498)
Q Consensus 434 ~~~~lt~~g~v~~wG~n 450 (498)
.+++.+.+|++|.-|.+
T Consensus 634 ~~~~~~~~G~l~~g~~~ 650 (795)
T 4a2l_A 634 ASYCRTSVGQMYFGGIN 650 (795)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred CceeECCCCeEEEecCC
Confidence 45667788888877654
No 81
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=31.88 E-value=3.1e+02 Score=25.39 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCcEEEEecCceEEEE--ecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecCCe--EEEEEcCCcEEE
Q psy1173 69 DNVVEVVVGGMHTVCL--TEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGDSH--SVALLEDGTVYA 143 (498)
Q Consensus 69 ~~i~~i~~g~~~~~~l--~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~~~--~~~L~~~G~vy~ 143 (498)
..|..++.......++ ..||.|..|-.... + ....+. ....|..++..... .+.-..||.|.+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~-----------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETG-D-----------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTC-C-----------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c-----------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 4677777765544444 47889999974321 1 111121 33467777665443 333457888888
Q ss_pred eCCcCCCCCccCCCCCCcceecEEe--cccCCeEEEecc--CCeEEEEecCCcEEEEec
Q psy1173 144 WGSFRDSHGSMGLKGEGIQKTPLKL--ESVSGIVKIASG--ADHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 144 ~G~~~~~~g~lG~~~~~~~~~p~~v--~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~ 198 (498)
|-. .... +... .....|..++.. ..+.+.-+.|+.|..|-.
T Consensus 177 wd~--~~~~------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 177 WDF--QGFE------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp EET--TSSC------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EeC--CCCc------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 854 1110 1111 112345555543 345566678899999954
No 82
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=31.13 E-value=2.8e+02 Score=24.56 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=12.4
Q ss_pred CceEEEEecCCcEEEeeC
Q psy1173 78 GMHTVCLTEDGKVYTWGC 95 (498)
Q Consensus 78 ~~~~~~l~~~g~l~~wG~ 95 (498)
+.+..++..+++||++|-
T Consensus 36 r~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 36 KNHVSLVTKENQVFVAGG 53 (315)
T ss_dssp SSEEEEECTTCCEEEEEE
T ss_pred ccceEEEEECCEEEEEcC
Confidence 344445556889999995
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=30.52 E-value=2.9e+02 Score=24.52 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=39.2
Q ss_pred CCCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeee-CCCceeEEeecC--CeEEEEEcCCcEE
Q psy1173 68 LDNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVN-LPKKAVQISAGD--SHSVALLEDGTVY 142 (498)
Q Consensus 68 ~~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~-~~~~i~~i~~g~--~~~~~L~~~G~vy 142 (498)
...|..++.... ..+.-..||.|..|-..... ....+. ....|..++... ...+....+|.|+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 346777777543 33344578889999643211 111121 345677777654 3445556789999
Q ss_pred EeCC
Q psy1173 143 AWGS 146 (498)
Q Consensus 143 ~~G~ 146 (498)
+|-.
T Consensus 100 iwd~ 103 (369)
T 3zwl_B 100 LWDV 103 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9964
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=30.28 E-value=3e+02 Score=24.59 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=35.4
Q ss_pred CCceeEEeecCCeE--EEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc--CCeEEEEecCCcE
Q psy1173 119 PKKAVQISAGDSHS--VALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG--ADHFVMLTSRGNL 193 (498)
Q Consensus 119 ~~~i~~i~~g~~~~--~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g--~~~~~~l~~~g~v 193 (498)
...|..++...+.. ++-..+|.|++|-... + .......+ .....|..++.. ....+....+|.|
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~---~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSG---N--------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEET---T--------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC---C--------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 34566666655433 3334688999996410 0 00011111 233456666544 3345555677888
Q ss_pred EEEe
Q psy1173 194 LTAG 197 (498)
Q Consensus 194 ~~~G 197 (498)
..|-
T Consensus 77 ~vwd 80 (372)
T 1k8k_C 77 YVWT 80 (372)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 85
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=27.89 E-value=2.1e+02 Score=22.08 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=29.6
Q ss_pred CcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEE-eccCceeEEEeCCCCEEE
Q psy1173 299 GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSI-ACGNCVSFAIDSEGVLYG 367 (498)
Q Consensus 299 g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i-~~g~~~~~~lt~~G~v~~ 367 (498)
-....+++..+|+||+--. ..+.. ....+..... ..+.+ ..-....++++++|++|.
T Consensus 56 ~sg~yL~m~~~G~v~Gs~~----------~s~ec-~flE~~~~~~-g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 56 ETGQFLRINPDGTVDGTRD----------RSDPG-IQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp TTCCEEEECTTSBEEEECC-----------CCGG-GCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEE
T ss_pred cccEEEEECCCCCEeeccC----------CCCCc-eeEEEEeecC-cEEEEEeccCCeEEEECCCCcCcC
Confidence 3456788899999997422 11111 1111111111 12222 223345899999999995
No 86
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=27.52 E-value=3.2e+02 Score=24.09 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=120.5
Q ss_pred eEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEec--cCCeEEEEecCCcEEEEecCCCCcccccc
Q psy1173 131 HSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIAS--GADHFVMLTSRGNLLTAGCPEQGQLGRIT 208 (498)
Q Consensus 131 ~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlg~~~ 208 (498)
-+++|+++|=+..-.. +.. ....+..+.. ..++.+++|++|++|.--... +-..
T Consensus 3 vtvils~~Gwir~~~g---------~~~-----------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~- 58 (276)
T 3no0_A 3 ITVAVLQDGSIIPVEE---------LPL-----------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQG- 58 (276)
T ss_dssp EEEEEETTSEEEEGGG---------CCS-----------SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTS-
T ss_pred EEEEEcCCceeeeccC---------CCC-----------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccC-
Confidence 3678899987765431 111 2333444433 344688999999999753211 1000
Q ss_pred ccccccccccCcccccCccccccccceeeeeec---cceEE-eccCCcEEEEeccCCccccccchhccccCCceeeccee
Q psy1173 209 QRSASRNARRGMSFLEPGEVPLKRKHIDDVFTG---VYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHL 284 (498)
Q Consensus 209 ~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g---~~~~~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~ 284 (498)
.... +......|..+.+. ....+ ++.+|.+.-.-..++.+-. .-...
T Consensus 59 -------~~~~--------ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~--------------~G~~~ 109 (276)
T 3no0_A 59 -------SKVS--------LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKA--------------QGMPI 109 (276)
T ss_dssp -------EECC--------CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCS--------------TTEEC
T ss_pred -------cccc--------cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhc--------------CCeEE
Confidence 0000 11135556666541 12344 8899988877655442100 01111
Q ss_pred ecccCCCcEEEEe--cCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEecc--CceeEEEe
Q psy1173 285 IKSLSDKKFTMLA--SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG--NCVSFAID 360 (498)
Q Consensus 285 i~~~~~~~i~~i~--~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt 360 (498)
+...++..+..+. .+..+.+++|++|++|.+-....-.+|..... ...+....+.+|+.+... ....+++|
T Consensus 110 i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i~L~~~d~vv~~~~~~~~~~ll~~T 184 (276)
T 3no0_A 110 IKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGIKLEKNDETSGLRIWNGEPYLLVIT 184 (276)
T ss_dssp SCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCCCTTCCEEEEEEESSCSEEEEEE
T ss_pred EecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEEccCCCCEEEEEEEeCCCCEEEEEe
Confidence 1212233344433 24567899999999999975443333221111 011333345678776554 34567778
Q ss_pred CCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCCCCCcEEEEE--eCCceEEEE
Q psy1173 361 SEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIA--CGNCVSFAI 438 (498)
Q Consensus 361 ~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~--~g~~~~~~l 438 (498)
++|.+.-.-...+...+.+. .|... + ..+.+++.+. .+.+..+++
T Consensus 185 ~~G~~kr~~~~e~~~~~R~g------------------kGv~~-------------i--~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 185 AKGRVKKISHEEIPKTNRGV------------------KGTEV-------------S--GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp TTSCEEEEEGGGSCCCCTTC------------------CCEEC-------------C--CSSSCEEEEEEESSEEEEEEE
T ss_pred CCCcEEEeEHHHcccCCCCC------------------cceEE-------------E--cCCCcEEEEEEeCCCCEEEEE
Confidence 88877765544332221110 00000 0 1122344432 356678889
Q ss_pred eCCCCEEE--EeCCCCCCcCC
Q psy1173 439 DSEGVLYG--WGMGNGYQLGN 457 (498)
Q Consensus 439 t~~g~v~~--wG~n~~gqLG~ 457 (498)
+++|++.. +--++.-.+|.
T Consensus 232 t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBCCT
T ss_pred cCCCeEEEeeeCHHHCCCcCC
Confidence 99999998 75555444443
No 87
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.49 E-value=3.5e+02 Score=24.58 Aligned_cols=249 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEecCceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC-----eEEEEEcCCcEEEeCC
Q psy1173 72 VEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS-----HSVALLEDGTVYAWGS 146 (498)
Q Consensus 72 ~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~-----~~~~L~~~G~vy~~G~ 146 (498)
...+....+.+++|+.|++|..--..-...+......+...-..+...++|+.+..... ..+++|++|.+.-.-.
T Consensus 47 ~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 47 FFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Q ss_pred cCCCCCccCCCCCCcceecEEecccCCeEEEe--ccCCeEEEEecCCcEEEEecC--CCCccccccccccccccccCccc
Q psy1173 147 FRDSHGSMGLKGEGIQKTPLKLESVSGIVKIA--SGADHFVMLTSRGNLLTAGCP--EQGQLGRITQRSASRNARRGMSF 222 (498)
Q Consensus 147 ~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~--~g~~~~~~l~~~g~v~~~G~n--~~gqlg~~~~~~~~~~~~~~~~~ 222 (498)
..+..... .-..-..+.....++.+. .+.++.+++|++|++|.+-.. .--..|.... -
T Consensus 127 --~~~~~~~r----~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~------------G 188 (327)
T 3uc1_A 127 --TDFDSNRS----GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS------------G 188 (327)
T ss_dssp --GGGCCCCS----SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB------------C
T ss_pred --HHhhcccc----CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC------------C
Q ss_pred ccCccccccccceeeeeeccceEE--eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCc
Q psy1173 223 LEPGEVPLKRKHIDDVFTGVYNTF--ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ 300 (498)
Q Consensus 223 ~~p~~i~~~~~~i~~i~~g~~~~~--~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~ 300 (498)
..-..+.....-+.-+.......+ ++++|.+.-.-...+.....+........... .....+ -..+..+.
T Consensus 189 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~d~lv-------~~~~~~~~ 260 (327)
T 3uc1_A 189 VQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RRGRLV-------GALIVDDD 260 (327)
T ss_dssp EESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TTCSEE-------EEEEECTT
T ss_pred eeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CCCeEE-------EEEEeCCC
Q ss_pred ceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEec
Q psy1173 301 HHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIAC 351 (498)
Q Consensus 301 ~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~ 351 (498)
...+++|++|++..+-.+.--..|.... --..+....+..|+.++.
T Consensus 261 ~~i~l~T~~G~~ir~~~~~i~~~gR~a~-----GV~~i~l~~~d~vv~~~~ 306 (327)
T 3uc1_A 261 SELYAVTSGGGVIRTAARQVRKAGRQTK-----GVRLMNLGEGDTLLAIAR 306 (327)
T ss_dssp CEEEEEEGGGCEEEEEGGGSCBCCTTSC-----CEECTTCCTTCCEEEEEE
T ss_pred ccEEEEcCCCeEEEEehhhccccCCCCC-----CeEeEecCCCCEEEEEEE
No 88
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=27.46 E-value=2.9e+02 Score=23.64 Aligned_cols=17 Identities=6% Similarity=-0.043 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCEEEEeC
Q psy1173 433 CVSFAIDSEGVLYGWGM 449 (498)
Q Consensus 433 ~~~~~lt~~g~v~~wG~ 449 (498)
-+.++++.+|+||.-..
T Consensus 274 ~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 274 PHGITFGKDGSVWFALK 290 (300)
T ss_dssp CCCEEECTTSCEEEECS
T ss_pred cceeEeCCCCCEEEEcc
Confidence 46677788888887544
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=27.26 E-value=5.2e+02 Score=26.47 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred CCCcEEEEec----CceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC----eEEEEEcCC
Q psy1173 68 LDNVVEVVVG----GMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS----HSVALLEDG 139 (498)
Q Consensus 68 ~~~i~~i~~g----~~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~----~~~~L~~~G 139 (498)
...|..++.. ....+....||.|..|-.... ..............|..++.... ..+.-..+|
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~---------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 3568888864 345556678899999974321 00011111113456777777644 556667889
Q ss_pred cEEEeCCcCCCCCccCCCCCCcceecEEe-cccCCeEEEecc---------------CCeEEEEecCCcEEEEec
Q psy1173 140 TVYAWGSFRDSHGSMGLKGEGIQKTPLKL-ESVSGIVKIASG---------------ADHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 140 ~vy~~G~~~~~~g~lG~~~~~~~~~p~~v-~~~~~i~~i~~g---------------~~~~~~l~~~g~v~~~G~ 198 (498)
.|++|-... ... ..+..+ .....|..+... ....+.-..+|.|..|-.
T Consensus 124 ~I~vwdl~~--~~~---------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~ 187 (753)
T 3jro_A 124 KVSVVEFKE--NGT---------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (753)
T ss_dssp EEEEEECCS--SSC---------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEE
T ss_pred cEEEEEeec--CCC---------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEec
Confidence 999997511 100 011111 223445555543 335566677899999853
No 90
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=26.65 E-value=1.1e+02 Score=27.82 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=13.4
Q ss_pred CceEEEEeCCCCEEEEeCC
Q psy1173 432 NCVSFAIDSEGVLYGWGMG 450 (498)
Q Consensus 432 ~~~~~~lt~~g~v~~wG~n 450 (498)
..|+++. -+++||++|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 67899999963
No 91
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=25.94 E-value=3.3e+02 Score=23.70 Aligned_cols=120 Identities=6% Similarity=-0.058 Sum_probs=58.8
Q ss_pred CCeEEEeccC--CeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeecc----ceE
Q psy1173 172 SGIVKIASGA--DHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGV----YNT 245 (498)
Q Consensus 172 ~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~----~~~ 245 (498)
..|..++... ...+.-..+|.|..|-....... ......+......|..++... ...
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN-----------------WELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC-----------------EEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc-----------------ceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 3466666443 34455567888999854321110 000011111244566665432 223
Q ss_pred E-eccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCc----ceeEEEecCCcEEEEecC
Q psy1173 246 F-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQ----HHSLALNSEGKIYAFGRH 318 (498)
Q Consensus 246 ~-~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~----~~~~~lt~~G~v~~~G~n 318 (498)
+ ...+|.|..|-........... . ..+..........|..++... ...+.-..+|.|+.|-..
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~---------~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGR---------R-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSC---------S-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEcCCCeEEEEecCCCccccccc---------C-cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 3 6778999998654322110000 0 011111112234577777654 345566788999999743
No 92
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=24.64 E-value=3.3e+02 Score=23.27 Aligned_cols=16 Identities=6% Similarity=-0.238 Sum_probs=10.9
Q ss_pred ceeEEEeCCCCEEEEe
Q psy1173 354 CVSFAIDSEGVLYGWG 369 (498)
Q Consensus 354 ~~~~~lt~~G~v~~wG 369 (498)
-+.++++.+|++|+-.
T Consensus 227 ~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTE 242 (299)
T ss_dssp EEEEEECSTTCEEEEE
T ss_pred ceeEEECCCCCEEEec
Confidence 3457777788887754
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=24.17 E-value=3.8e+02 Score=23.82 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecCC--eEEEEEcCCcEEEe
Q psy1173 69 DNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS--HSVALLEDGTVYAW 144 (498)
Q Consensus 69 ~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~L~~~G~vy~~ 144 (498)
..|..++.... ..++-..+|.|+.|-..... .............|..++...+ ..+.-..+|.|++|
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 34666665433 33333468888888642210 0011111123456777776543 34445678999999
Q ss_pred CCcCCCCCccCCCCCCcceecEE--ecccCCeEEEecc--CCeEEEEecCCcEEEEec
Q psy1173 145 GSFRDSHGSMGLKGEGIQKTPLK--LESVSGIVKIASG--ADHFVMLTSRGNLLTAGC 198 (498)
Q Consensus 145 G~~~~~~g~lG~~~~~~~~~p~~--v~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~ 198 (498)
-... + ...+.. ......|..++.. ....++...++.|+.|-.
T Consensus 80 d~~~---~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 80 TLKG---R---------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEET---T---------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred ECCC---C---------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 6411 0 011111 1233456666654 334555567888888853
No 94
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=23.94 E-value=4.1e+02 Score=24.12 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=58.0
Q ss_pred CCCcEEEEecCc--eEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeecC---CeEEEEEcCCcEE
Q psy1173 68 LDNVVEVVVGGM--HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGD---SHSVALLEDGTVY 142 (498)
Q Consensus 68 ~~~i~~i~~g~~--~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g~---~~~~~L~~~G~vy 142 (498)
...|..++.... ..+.-..||.|..|-...... + .............|..++... ...+.-..+|.|+
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-A------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-C------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccc-c------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 346777776443 333345788999986543100 0 001111111345677777654 3445556789999
Q ss_pred EeCCcCCCCCccCCCCCCcceecE-EecccCCeEEEeccC---CeEEEEecCCcEEEEecC
Q psy1173 143 AWGSFRDSHGSMGLKGEGIQKTPL-KLESVSGIVKIASGA---DHFVMLTSRGNLLTAGCP 199 (498)
Q Consensus 143 ~~G~~~~~~g~lG~~~~~~~~~p~-~v~~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~n 199 (498)
+|-.... .... .... ...+. .......|..++... ...+.-..+|.|..|-..
T Consensus 140 iwd~~~~--~~~~-~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 140 IWDMNKC--TESP-SNYT-PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp BCBTTTT--SSCT-TTCC-CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEECCCC--cccc-cccc-ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 9975211 1000 0000 00000 011233455555543 334445678889998543
No 95
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=23.21 E-value=3.5e+02 Score=23.12 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=8.7
Q ss_pred EEEEecCCcEEEE
Q psy1173 184 FVMLTSRGNLLTA 196 (498)
Q Consensus 184 ~~~l~~~g~v~~~ 196 (498)
.++++.+|++|+.
T Consensus 255 ~i~~~~~g~l~vs 267 (286)
T 1q7f_A 255 DVALMDDGSVVLA 267 (286)
T ss_dssp EEEEETTTEEEEE
T ss_pred eEEECCCCcEEEE
Confidence 5666677777765
No 96
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=21.79 E-value=2.9e+02 Score=21.62 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=65.8
Q ss_pred ccceeeecCCCCcEEEEecC-ceEEEEecCCcEEEeeCCCCCCCCCcCCCCCcccceeeeCCCceeEEeec-CCeEEEEE
Q psy1173 59 RKTFALVEDLDNVVEVVVGG-MHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAG-DSHSVALL 136 (498)
Q Consensus 59 ~~~p~~v~~~~~i~~i~~g~-~~~~~l~~~g~l~~wG~n~~gqlg~~~~~~~~~~p~~~~~~~~i~~i~~g-~~~~~~L~ 136 (498)
...+..-+...+.+++.|-. .+.+-+..||+|-.-..... ......... ....++.|.+- ...-+++.
T Consensus 20 ~~~~~~~~~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~--------~~s~lei~s--v~~G~V~L~g~~sg~yL~mn 89 (142)
T 3p6j_A 20 HIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD--------THIQFQISP--EGNGEVLLKSTETGQYLRIN 89 (142)
T ss_dssp TCCEEEEECSTTCEEEEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEE--EETTEEEEEETTTTEEEEEC
T ss_pred eeEEEECcccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC--------CceEEEEEE--ccCCEEEEEEecCCEEEeEC
Confidence 33444556778899999976 67777889999975432211 011111222 22357788875 46777888
Q ss_pred cCCcEEEeCCcCCCCCccCCCCCCcceec-EEecccCCeEEEec-cCCeEEEEecCCcEEEE
Q psy1173 137 EDGTVYAWGSFRDSHGSMGLKGEGIQKTP-LKLESVSGIVKIAS-GADHFVMLTSRGNLLTA 196 (498)
Q Consensus 137 ~~G~vy~~G~~~~~~g~lG~~~~~~~~~p-~~v~~~~~i~~i~~-g~~~~~~l~~~g~v~~~ 196 (498)
.+|+||.--. ....... ..+......+.+.. -...-+++.++|++|..
T Consensus 90 ~~G~l~Gs~~------------~t~ecsflEi~~en~y~v~i~g~~sg~YLamnk~Grlygs 139 (142)
T 3p6j_A 90 PDGTVDGTRD------------RSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGT 139 (142)
T ss_dssp TTSBEEEECC------------TTCGGGCEEEEECSTTCEEEEETTTCCEEEECTTSBEEEE
T ss_pred CCCCEeeccc------------CCCCceEEEEEeecCcEEEEEEecCCEEEEECCCcCCccC
Confidence 9999996532 1111111 11221222333332 22347899999999863
No 97
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=21.60 E-value=4.2e+02 Score=23.36 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=12.1
Q ss_pred ceEEeccCCcEEEEecc
Q psy1173 243 YNTFISSKGSILAFGLN 259 (498)
Q Consensus 243 ~~~~~~~~g~v~~~G~n 259 (498)
.|+++..+++||.+|-.
T Consensus 151 ~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 151 GHNVISHNGMIYCLGGK 167 (318)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred ccEEEEECCEEEEEcCC
Confidence 45555578899999853
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=21.33 E-value=4.7e+02 Score=23.83 Aligned_cols=154 Identities=10% Similarity=0.033 Sum_probs=73.5
Q ss_pred EeccCCeEEEE---ecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeecc---ceEE-ecc
Q psy1173 177 IASGADHFVML---TSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGV---YNTF-ISS 249 (498)
Q Consensus 177 i~~g~~~~~~l---~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~---~~~~-~~~ 249 (498)
+++......++ ..+|.|++|-....+++.. ....+......|..++... ...+ ...
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-----------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-----------------NVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-----------------TCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-----------------CCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 44444444443 4578999996554433210 0001111244566666533 2333 677
Q ss_pred CCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcc---eeEEEecCCcEEEEecCCCCccccc
Q psy1173 250 KGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQH---HSLALNSEGKIYAFGRHDYGRLGLK 326 (498)
Q Consensus 250 ~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~G~v~~~G~n~~gqlg~~ 326 (498)
+|.|..|-......... . ..+...-......|..++.... ..+.-..||.|+.|-......
T Consensus 103 dg~v~vw~~~~~~~~~~-----------~-~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---- 166 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLP-----------L-REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA---- 166 (402)
T ss_dssp TSEEEEEECCTTCCSSC-----------B-CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE----
T ss_pred CCeEEEEEccCCCCccc-----------c-CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc----
Confidence 89999996544321100 0 0111111112234666665433 344456788899986432111
Q ss_pred CCCCCccCCcccC-CCCCCcEEEEecc--CceeEEEeCCCCEEEEeCC
Q psy1173 327 NVSEPVTEPTPIP-SLQDKTITSIACG--NCVSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 327 ~~~~~~~~p~~i~-~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n 371 (498)
...+. ......|..++.. ....+.-..+|.|+.|-..
T Consensus 167 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 167 --------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp --------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred --------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 11110 1122346666654 2334444567888888754
No 99
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.22 E-value=4.1e+02 Score=23.09 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred ecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCC--cccCCCCCCcEEEEecc--CceeEEEeCCCCEEEEeCC
Q psy1173 297 ASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEP--TPIPSLQDKTITSIACG--NCVSFAIDSEGVLYGWGMG 371 (498)
Q Consensus 297 ~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p--~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n 371 (498)
+...++.+++|+.|++|.+-.... .... ..-.| ..++...+.+|+.+... ..+.+++|++|.+.-.-..
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~el-----p~~r-~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITL-----PSAR-GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGS-----CCSS-SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHC-----CCcC-CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 345668899999999999875432 0000 01111 23444456788888763 3446777888877765543
No 100
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=20.81 E-value=4.2e+02 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=16.1
Q ss_pred CCcEEEEecC-cceeEEEecCCc-EEEEec
Q psy1173 290 DKKFTMLASG-QHHSLALNSEGK-IYAFGR 317 (498)
Q Consensus 290 ~~~i~~i~~g-~~~~~~lt~~G~-v~~~G~ 317 (498)
+-++.-..++ ....++++.+|+ ++.++.
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 3444444455 555666777886 566653
No 101
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=20.63 E-value=4.5e+02 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.6
Q ss_pred EeecCCeEEEEEcCCcEEEeCC
Q psy1173 125 ISAGDSHSVALLEDGTVYAWGS 146 (498)
Q Consensus 125 i~~g~~~~~~L~~~G~vy~~G~ 146 (498)
...+.-..++++.+|++|+...
T Consensus 21 ~~l~~v~~va~d~~G~l~v~~~ 42 (329)
T 3fvz_A 21 LLPGQVSGVALDSKNNLVIFHR 42 (329)
T ss_dssp CCCSCEEEEEECTTCCEEEEEC
T ss_pred eecCCceEEEECCCCCEEEEeC
Confidence 3445556777888888888765
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=20.45 E-value=4.1e+02 Score=22.84 Aligned_cols=139 Identities=6% Similarity=-0.019 Sum_probs=67.5
Q ss_pred cccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceE--EEEecCCcEEEeeCCCCCCCCCcCC
Q psy1173 29 TLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHT--VCLTEDGKVYTWGCNDEGALGREAE 106 (498)
Q Consensus 29 ~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~--~~l~~~g~l~~wG~n~~gqlg~~~~ 106 (498)
+.+|+-.|+.|+.|=... |+ .......-.....|..|+...... +.-..||.|..|-......
T Consensus 37 ~~lAvg~D~tV~iWd~~t-g~--------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~------ 101 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASS-GD--------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR------ 101 (318)
T ss_dssp SEEEEEETTEEEEEETTT-CC--------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------
T ss_pred CEEEEEeCCEEEEEECCC-CC--------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee------
Confidence 355666788888885432 11 000111111234577777655433 3345788999996433211
Q ss_pred CCCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEecccCCeEEEe--ccCCeE
Q psy1173 107 GDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIA--SGADHF 184 (498)
Q Consensus 107 ~~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~~~~~i~~i~--~g~~~~ 184 (498)
..........+..++......+.-..++.++.|-... . .............+..+. ......
T Consensus 102 -----~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 -----LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRV--A---------EHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp -----EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTS--S---------SCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred -----EEEecCccceEEEeecCCCEEEEEecCCceEeeecCC--C---------ceeEEEEcCccCceEEEEEcCCCCEE
Confidence 1111112334555665555555566777777775411 0 000111111222333333 333455
Q ss_pred EEEecCCcEEEEec
Q psy1173 185 VMLTSRGNLLTAGC 198 (498)
Q Consensus 185 ~~l~~~g~v~~~G~ 198 (498)
+.-..++.|..|-.
T Consensus 166 ~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 166 ASGGNDNLVNVWPS 179 (318)
T ss_dssp EEEETTSCEEEEES
T ss_pred EEEecCcceeEEEC
Confidence 56677888988853
No 103
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.16 E-value=7.1e+02 Score=25.50 Aligned_cols=123 Identities=10% Similarity=0.085 Sum_probs=67.3
Q ss_pred ecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCcccCCCCCCcEEEEecc--CceeEEEeCCCCEEEEeCCCcc
Q psy1173 297 ASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACG--NCVSFAIDSEGVLYGWGMGNGY 374 (498)
Q Consensus 297 ~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~v~~wG~n~~g 374 (498)
+...++.+++|+.|++|..-....-. + ...-......++...+++|+.+... ..+.++.|++|.+.-.-...+
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~-~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~- 585 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---A-RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL- 585 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---C-C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG-
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---c-cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHh-
Confidence 34456788899999999876433211 0 0111112223444466788888775 344566688887765443221
Q ss_pred ccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCeecCCC-CCCcEEEE---EeCCceEEEEeCCCCEEEEeCC
Q psy1173 375 QLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSL-QDKTITSI---ACGNCVSFAIDSEGVLYGWGMG 450 (498)
Q Consensus 375 qlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~v~~~-~~~~i~~i---~~g~~~~~~lt~~g~v~~wG~n 450 (498)
..........-.+ .+..++.+ ..+..+.++++++|++..|--.
T Consensus 586 ---------------------------------~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~ 632 (716)
T 1zvu_A 586 ---------------------------------VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 632 (716)
T ss_dssp ---------------------------------CCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEST
T ss_pred ---------------------------------cccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHH
Confidence 1111111111111 22233322 2467789999999999999876
Q ss_pred CCCCcCC
Q psy1173 451 NGYQLGN 457 (498)
Q Consensus 451 ~~gqLG~ 457 (498)
+--.+|.
T Consensus 633 ~v~~~gr 639 (716)
T 1zvu_A 633 DLPQLSK 639 (716)
T ss_dssp TSCBCSS
T ss_pred HCCccCc
Confidence 6544444
Done!