RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1173
(498 letters)
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 365 bits (939), Expect = e-123
Identities = 173/421 (41%), Positives = 245/421 (58%), Gaps = 46/421 (10%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
T G+VLT GQGD GQLGLG +VMERK ALV ++VV+ GGMHTVCL++ G+VY++
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSF 83
Query: 94 GCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152
GCNDEGALGR+ + SE +P V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G
Sbjct: 84 GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNG 143
Query: 153 SMGL-KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRS 211
+GL + P++++ +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ +
Sbjct: 144 VIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELF 203
Query: 212 ASRNARRGM-SFLEPGEVPLKRK------HIDDVFTGVYNTF-ISSKGSILAFGLNNYSQ 263
A+R R+G+ L P V LK + D F G Y TF IS +G + FGL+NY Q
Sbjct: 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263
Query: 264 LGEADSEVQKSGNTCFFTPHLIKSLSD--KKFTMLASGQHHSLALNSEGKIYAFGRHDYG 321
LG +E F P + S + K + + GQHH++ ++SEGK Y+ GR +YG
Sbjct: 264 LGTPGTESC-------FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 316
Query: 322 RLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 381
RLGL +E + PT I L ++S+ACG V +A+ +G ++ WGMG YQLG G++
Sbjct: 317 RLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 374
Query: 382 DDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSE 441
+D PV L+++ + S++ G + + +
Sbjct: 375 ED-----------------------AWSPV--EMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Query: 442 G 442
Sbjct: 410 K 410
Score = 303 bits (777), Expect = 7e-99
Identities = 124/440 (28%), Positives = 191/440 (43%), Gaps = 57/440 (12%)
Query: 71 VVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDS 130
V H TE G V T G D G LG P V++P+ VQ AG
Sbjct: 10 PKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM 69
Query: 131 HSVALLEDGTVYAWGSFRDSHGSMGL--KGEGIQKTPLKLESVSGIVKIASGADHFVMLT 188
H+V L + G VY++G + G++G EG + P K+E +V++++G H LT
Sbjct: 70 HTVCLSKSGQVYSFG--CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALT 127
Query: 189 SRGNLLTAGCPE--QGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNT- 245
G + G G +G + S P +V L + V +G +
Sbjct: 128 DDGRVFLWGSFRDNNGVIGLLEPMKKSM---------VPVQVQLDVP-VVKVASGNDHLV 177
Query: 246 FISSKGSILAFGLNNYSQLG----EADSEVQKSGNTCFFTPHLI-----KSLSDKKFTML 296
+++ G + G QLG + + G P + S +F
Sbjct: 178 MLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDA 237
Query: 297 ASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQD--KTITSIACGNC 354
G + + A++ EG +Y FG +Y +LG +E P + S ++ K+ + G
Sbjct: 238 FCGAYFTFAISHEGHVYGFGLSNYHQLGTPG-TESCFIPQNLTSFKNSTKSWVGFSGGQH 296
Query: 355 VSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 414
+ +DSEG Y GR +YGRLGL +E + P
Sbjct: 297 HTVCMDSEGKAYSL--------------------------GRAEYGRLGLGEGAEEKSIP 330
Query: 415 TPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQL 474
T I L ++S+ACG V +A+ +G ++ WGMG YQLG G+++D P+++ GKQL
Sbjct: 331 TLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQL 388
Query: 475 NNYTVLQVASGGQHSVILAK 494
N VL V+SGGQH+V+L K
Sbjct: 389 ENRVVLSVSSGGQHTVLLVK 408
Score = 134 bits (339), Expect = 6e-35
Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 36/208 (17%)
Query: 288 LSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTIT 347
+D H G + G+ D G+LGL +P + +D +
Sbjct: 5 PADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VV 62
Query: 348 SIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNV 407
G + + G +Y +G + LG +
Sbjct: 63 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE------------------------ 98
Query: 408 SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMG-NGY-QLGNGKE-DDIL 464
+E P + + ++ G+ + A+ +G ++ WG + +G + +
Sbjct: 99 ---GSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSM 155
Query: 465 EPMKIEGKQLNNYTVLQVASGGQHSVIL 492
P++++ + V++VASG H V+L
Sbjct: 156 VPVQVQL----DVPVVKVASGNDHLVML 179
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 352 bits (905), Expect = e-118
Identities = 167/416 (40%), Positives = 226/416 (54%), Gaps = 43/416 (10%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
T G VL CG GD GQLGLG D++ERK + V + + V++ GGMH + LT+ G +Y++
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 94 GCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152
GCNDEGALGR+ D SE P ++LP KA+ ISAGDSHS LLEDG V+AWGSFRDSHG
Sbjct: 100 GCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHG 159
Query: 153 SMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSA 212
+MGL +G ++TP+ L + IASGADH V+LT+ G + T GC EQGQLGR+++RS
Sbjct: 160 NMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSI 219
Query: 213 SRNARRGM-SFLEPGEVP-LKRKHIDDVFTGVYNTFI--SSKGSILAFGLNNYSQLGEAD 268
S RRG L P ++ + K + ++ Y TF+ S I A GLNN+ QL
Sbjct: 220 SGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHET 279
Query: 269 SEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNV 328
+ F IK+ K +A GQHH++ L ++ K GR +YGRLGL +V
Sbjct: 280 KGKE-------FALTPIKTEL-KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV 331
Query: 329 SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSE 388
+ V +PT + L + I S+ CG S+A+ +G LY WG G QLG G DD
Sbjct: 332 KDVVEKPTIVKKL-TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD----- 385
Query: 389 GKIYAFGRHDYGRLGLKNVSEPVTEPTPIPS--LQDKTITSIACGNCVSFAIDSEG 442
EP + S Q K + + G + +
Sbjct: 386 ----------------------ELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419
Score = 291 bits (746), Expect = 3e-94
Identities = 102/462 (22%), Positives = 169/462 (36%), Gaps = 55/462 (11%)
Query: 43 GQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALG 102
G L + E + + T G V G D G LG
Sbjct: 1 GSPRRKALTNNNNAGEAEQ---QPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLG 57
Query: 103 REAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGL--KGEG 160
+ V AV ISAG H++ L + G +Y++G + G++G +G
Sbjct: 58 LGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG--CNDEGALGRDTSEDG 115
Query: 161 IQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPE--QGQLGRITQRSASRNARR 218
+ P ++ + I++G H L G + G G +G +
Sbjct: 116 SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT---- 171
Query: 219 GMSFLEPGEVPLKRKHIDDVFTGVYNT-FISSKGSILAFGLNNYSQLG----EADSEVQK 273
P ++ + +G + +++ G + G QLG + S +
Sbjct: 172 ------PIDLMEG-TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224
Query: 274 SGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSE-GKIYAFGRHDYGRLGLKNVSEPV 332
G P + K F + + + + S+ I+A G +++ +L +
Sbjct: 225 RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHET-KGKE 283
Query: 333 TEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIY 392
TPI + K I IA G + + ++
Sbjct: 284 FALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVV------------------------ 318
Query: 393 AFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNG 452
GR +YGRLGL +V + V +PT + L + I S+ CG S+A+ +G LY WG G
Sbjct: 319 --GRPEYGRLGLGDVKDVVEKPTIVKKL-TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVN 375
Query: 453 YQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAK 494
QLG G DD LEP+ + K +L + GGQH++ L K
Sbjct: 376 NQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVK 417
Score = 165 bits (420), Expect = 3e-46
Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 38/299 (12%)
Query: 34 TGGGVVLTCGQG--DTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVY 91
G V G G +GL D ++T + + + G H V LT GKV+
Sbjct: 143 LEDGRVFAWGSFRDSHGNMGLTIDGN-KRTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 92 TWGCNDEGALGR----------EAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALL-ED 138
T GC ++G LGR P + + K I A + + +
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
Query: 139 GTVYAWGSFRDSHGSMGLKGEGIQKTPLKLES-VSGIVKIASGADHFVMLTSRGNLLTAG 197
++A G ++ + + +G + +++ + I IA G H V+LT+ G
Sbjct: 262 QVIWATG--LNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVG 319
Query: 198 CPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSILAF 256
PE G+LG + +P V + I V G ++ ++ G + ++
Sbjct: 320 RPEYGRLGLGDVKDVVE---------KPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSW 370
Query: 257 GLNNYSQLGEADSEVQKSGNTCFFTPHLI--KSLSDKKFTMLASGQHHSLALNSEGKIY 313
G +QLG D + + P ++ K+ K + + G H++ L K
Sbjct: 371 GSGVNNQLGVGDGDDE-------LEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQD 422
Score = 135 bits (341), Expect = 4e-35
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 7/168 (4%)
Query: 29 TLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDG 88
T ++ V+ G + QL E + +L ++ + G HTV LT D
Sbjct: 254 TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDL 313
Query: 89 KVYTWGCNDEGALGREAEGDSEFIPQTV-NLPKKAVQISAGDSHSVALLEDGTVYAWGSF 147
K G + G LG D P V L +K V + G+ S A+ DG +Y+WG
Sbjct: 314 KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWG-- 371
Query: 148 RDSHGSMGLKGEGIQKTPLKLESVSG----IVKIASGADHFVMLTSRG 191
+ +G+ + P+ + S + ++ + G H + L
Sbjct: 372 SGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 312 bits (800), Expect = e-101
Identities = 122/475 (25%), Positives = 188/475 (39%), Gaps = 92/475 (19%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVME------RKTFALVEDLDNVVEVVVGGMHTVCLTED 87
+ G G +LGLGP R L D ++ VGGMHT+ L E+
Sbjct: 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE 85
Query: 88 GKVYTWGCNDEGALGRE----------------------AEGDSEFIPQTVNLP------ 119
V++WGCND GALGR+ + E P +
Sbjct: 86 SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145
Query: 120 --KKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGI--QKTPLKLESVSG-- 173
K VQ++A D+ S AL +G VYAWG+FR + G +G + I QKTP K+ + S
Sbjct: 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYN 205
Query: 174 IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRK 233
IV++A G DH + L G + G +Q QLGR R + L+P L +
Sbjct: 206 IVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV------MERFRLKTLDPRPFGL--R 257
Query: 234 HIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKK 292
H+ + +G + F ++ ++++GLN + Q G ++ P + +
Sbjct: 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV---EDGALVTKPKRLALPDNVV 314
Query: 293 FTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVT-----------EPTPIPSL 341
+A+G+HHSL L+ +G +Y+ GR D +G+ + P P P
Sbjct: 315 IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN 374
Query: 342 QDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGR 401
S+A G+ S A+ G+ Y WG G Y +G G +D
Sbjct: 375 NVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED------------------ 416
Query: 402 LGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAI-----DSEGVLYGWGMGN 451
+ P + QD I + CG S + D + M +
Sbjct: 417 ----DTEVPT--RIKNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDD 465
Score = 245 bits (627), Expect = 8e-76
Identities = 75/448 (16%), Positives = 145/448 (32%), Gaps = 77/448 (17%)
Query: 65 VEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSE------FIPQTVNL 118
+ +++ H + ++ WG LG ++ P
Sbjct: 6 HHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRD 65
Query: 119 PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIA 178
K + + G H++AL E+ V++WG + G++G ++ +++
Sbjct: 66 EAKIISFAVGGMHTLALDEESNVWSWG--CNDVGALGRDTSNAKEQLKDMDADDSSDDED 123
Query: 179 SGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDV 238
+ ++ + +G ++ Q +
Sbjct: 124 GDLNELESTPAKIPRESFPPLAEGH--KVVQ----------------------------L 153
Query: 239 FTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLA 297
+ + S G + A+G ++ + TP + + S LA
Sbjct: 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ---DKIKIQKTPWKVPTFSKYNIVQLA 210
Query: 298 SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQD-KTITSIACGNCVS 356
G+ H L L+ EG ++A+G +LG K E T P + + IA G
Sbjct: 211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKV-MERFRLKTLDPRPFGLRHVKYIASGENHC 269
Query: 357 FAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTP 416
FA+ + L WG+ Q G ++ + VT+P
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVED-----------------------GALVTKPKR 306
Query: 417 IPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNN 476
+ + I SIA G S + +G LY G + +++G K++ K +
Sbjct: 307 LALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARA 366
Query: 477 Y----------TVLQVASGGQHSVILAK 494
VA+G HSV +A+
Sbjct: 367 VPLPTKLNNVPKFKSVAAGSHHSVAVAQ 394
Score = 188 bits (478), Expect = 4e-54
Identities = 74/361 (20%), Positives = 124/361 (34%), Gaps = 66/361 (18%)
Query: 164 TPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNAR-RGMSF 222
+S I+ H + ++ G +LG R R F
Sbjct: 2 GHHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPF 61
Query: 223 LEPGEVPLKRKHIDDVFTGVYNT-FISSKGSILAFGLNNYSQLG---------------- 265
L E I G +T + + ++ ++G N+ LG
Sbjct: 62 LPRDEA-----KIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDAD 116
Query: 266 EADSEVQKSGNTCFFTPHLIKSLS------DKKFTMLASGQHHSLALNSEGKIYAFG--R 317
++ + N TP I S K LA+ + S AL S G++YA+G R
Sbjct: 117 DSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFR 176
Query: 318 HDYGRLGL-KNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQL 376
+ G LG ++ + P +P+ I +A G +D EG+++ WG G QL
Sbjct: 177 CNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQL 236
Query: 377 GNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQD-KTITSIACGNCVS 435
G V E T P + + IA G
Sbjct: 237 GRK---------------------------VMERFRLKTLDPRPFGLRHVKYIASGENHC 269
Query: 436 FAIDSEGVLYGWGMGNGYQLGNGKEDD----ILEPMKIEGKQLNNYTVLQVASGGQHSVI 491
FA+ + L WG+ Q G ++ + + +P ++ +N + +A+G HS+I
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL--PDNVVIRSIAAGEHHSLI 327
Query: 492 L 492
L
Sbjct: 328 L 328
Score = 63.2 bits (154), Expect = 7e-11
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 415 TPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNG---KEDDILEPMKIEG 471
I + + ++ WG G+ +LG G K ++ P
Sbjct: 2 GHHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPF 61
Query: 472 KQLNNYTVLQVASGGQHSVILAK 494
+ ++ A GG H++ L +
Sbjct: 62 LPRDEAKIISFAVGGMHTLALDE 84
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 295 bits (758), Expect = 4e-96
Identities = 110/426 (25%), Positives = 180/426 (42%), Gaps = 62/426 (14%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLD--NVVEVVVGGMHTVCLTEDG-KV 90
G +V + G+G+ GQLG G D +R + + LD +V V G HTV ++ G +V
Sbjct: 32 LSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 90
Query: 91 YTWGCNDEGALGREAEGDSEFIPQTVNLPK--KAVQISAGDSHSVALLEDGTVYAWGSFR 148
Y+WG D G LG D F P + + QI+ GDSH +A+ +G V +WG R
Sbjct: 91 YSWGWGDFGRLGHGNSSDL-FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--R 147
Query: 149 DSHGSMGLKGEGIQKTPLKLESVSG--IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGR 206
+ +G +GL P K+++ G I +A+GA+H +T G+L G G LG
Sbjct: 148 NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 207
Query: 207 ITQRSASRNARRGMSFLEPGEVP-LKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQL 264
+ P V + + V G +T +S G++ +G + Y QL
Sbjct: 208 GDRTDRLV----------PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQL 257
Query: 265 GEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLG 324
G D E PH +++LS+ + ++ G H++AL S+GK+Y +G + +G++G
Sbjct: 258 GHGDLEDH-------LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG 310
Query: 325 LKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDI 384
+ N + P + D+ + ++CG + A+ ++ WG G QLG G+ D
Sbjct: 311 VGN-NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVD- 368
Query: 385 LNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVL 444
P I +L A G + +
Sbjct: 369 --------------------------RNFPKIIEALS----VDGASGQHIESSNIDPSSG 398
Query: 445 YGWGMG 450
W
Sbjct: 399 KSWVSP 404
Score = 282 bits (725), Expect = 3e-91
Identities = 106/452 (23%), Positives = 178/452 (39%), Gaps = 64/452 (14%)
Query: 51 GLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSE 110
G+ D+ + + V+ + G H+V L V +WG ++G LG D
Sbjct: 1 GMAEDMAADE---VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDR- 56
Query: 111 FIPQTVNLP--KKAVQISAGDSHSVALLEDGT-VYAWGSFRDSHGSMGLKGEGIQKTPLK 167
P ++ + V ++ G H+VA + G VY+WG G +G TPL
Sbjct: 57 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG--WGDFGRLGHGNSSDLFTPLP 114
Query: 168 LESVSG--IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEP 225
++++ G I +IA G H + +T G + + G + GQLG + P
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSL----------VP 164
Query: 226 GEVP-LKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPH 283
++ + I V G +T ++ G + +G Y LG D + P
Sbjct: 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-------LVPE 217
Query: 284 LIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQD 343
+ S +K +M+A G H+++++ G +Y +G YG+LG + E P + +L +
Sbjct: 218 RVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD-LEDHLIPHKLEALSN 276
Query: 344 KTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLG 403
I+ I+ G + A+ S+G LYGWG Q+G G D
Sbjct: 277 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-------------------- 316
Query: 404 LKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDI 463
P + D+ + ++CG + A+ ++ WG G QLG G+ D
Sbjct: 317 -------QCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDR 369
Query: 464 LEPMKIEGKQLNNYTVLQVASGGQHSVILAKP 495
P IE + ASG P
Sbjct: 370 NFPKIIEALS------VDGASGQHIESSNIDP 395
Score = 227 bits (581), Expect = 8e-70
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 34/347 (9%)
Query: 33 KTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLD--NVVEVVVGGMHTVCLTEDGKV 90
G V + G GD G+LG G + + T ++ L + ++ G H + +T +G+V
Sbjct: 84 SQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEV 142
Query: 91 YTWGCNDEGALGREAEGDSEFIPQTVNLP--KKAVQISAGDSHSVALLEDGTVYAWGSFR 148
+WG N G LG DS +PQ + + ++AG H+ A+ EDG +Y WG
Sbjct: 143 QSWGRNQNGQLGLGDTEDS-LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--W 199
Query: 149 DSHGSMGLKGEGIQKTPLKLESVSG--IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGR 206
+G++GL + P ++ S G + +A G H + ++ G L T G + GQLG
Sbjct: 200 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGH 259
Query: 207 ITQRSASRNARRGMSFLEPGEVP-LKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQL 264
P ++ L I + G +T ++S G + +G N + Q+
Sbjct: 260 GDLEDHLI----------PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 309
Query: 265 GEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLG 324
G ++ Q +P ++ D+K ++ G H+LA+ ++A+GR G+LG
Sbjct: 310 GVGNNLDQC-------SPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Query: 325 LKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMG 371
+ S P I +L A G + + W
Sbjct: 363 IGE-SVDRNFPKIIEALS----VDGASGQHIESSNIDPSSGKSWVSP 404
Score = 55.7 bits (135), Expect = 2e-08
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
T V G+G GQLG+G + ++R ++E L V+ G + +W
Sbjct: 345 TERNNVFAWGRGTNGQLGIG-ESVDRNFPKIIEALS--VDGASGQHIESSNIDPSSGKSW 401
Query: 94 GCNDE 98
E
Sbjct: 402 VSPAE 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 291 bits (746), Expect = 1e-94
Identities = 114/431 (26%), Positives = 183/431 (42%), Gaps = 60/431 (13%)
Query: 77 GGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPK--KAVQISAGDSHSVA 134
G + G +Y WG N G LG EG +P + VQ+ G+ A
Sbjct: 9 SGRENLYFQGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLFA 67
Query: 135 LLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGI----VKIASGADHFVMLTSR 190
+ DG +YA G + G +G+ G TP LES+ + V + SG H + L+S
Sbjct: 68 VTADGKLYATG--YGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 191 GNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP-LKRKHIDDVFTGVYNT-FIS 248
G + + G E G+LG + R P + L+ + DV G ++ ++
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDR----------PRVIESLRGIEVVDVAAGGAHSACVT 175
Query: 249 SKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLA--SGQHHSLAL 306
+ G + +G Y +LG +DSE Q P L+++L + +A SG +L L
Sbjct: 176 AAGDLYTWGKGRYGRLGHSDSEDQ-------LKPKLVEALQGHRVVDIACGSGDAQTLCL 228
Query: 307 NSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLY 366
+ ++++G DYG+LG S+ P I SL + + CG+ S A+ G +Y
Sbjct: 229 TDDDTVWSWGDGDYGKLGRGG-SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVY 287
Query: 367 GWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTIT 426
WG G+ ++LG+G +D V P + LQ K +
Sbjct: 288 TWGKGDYHRLGHGSDDH---------------------------VRRPRQVQGLQGKKVI 320
Query: 427 SIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGG 486
+IA G+ +G +Y WG + QLG+G + I P + L V +VA G
Sbjct: 321 AIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA--LQGKKVNRVACGS 378
Query: 487 QHSVILAKPKP 497
H++ + KP
Sbjct: 379 AHTLAWSTSKP 389
Score = 276 bits (707), Expect = 1e-88
Identities = 101/419 (24%), Positives = 167/419 (39%), Gaps = 61/419 (14%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDN--VVEVVVGGMHTVCLTEDGKVY 91
G G + G GQLG + + K E L V+++ G +T DGK+Y
Sbjct: 17 QGSGTIYGWGHNHRGQLGGI-EGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLY 75
Query: 92 TWGCNDEGALGREAEGDSEFIPQTV----NLPKKAVQISAGDSHSVALLEDGTVYAWGSF 147
G G LG P + ++ K V +++G H +AL +G VY+WG
Sbjct: 76 ATGYGAGGRLGIGGTESV-STPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG-- 132
Query: 148 RDSHGSMGLKGEGIQKTPLKLESVSG--IVKIASGADHFVMLTSRGNLLTAGCPEQGQLG 205
G +G P +ES+ G +V +A+G H +T+ G+L T G G+LG
Sbjct: 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 206 RITQRSASRNARRGMSFLEPGEVP-LKRKHIDDVFTGVYNTF---ISSKGSILAFGLNNY 261
+ P V L+ + D+ G + ++ ++ ++G +Y
Sbjct: 193 HSDSEDQLK----------PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242
Query: 262 SQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYG 321
+LG S+ P I SL+ + G S+AL G +Y +G+ DY
Sbjct: 243 GKLGRGGSDGC-------KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH 295
Query: 322 RLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 381
RLG + + V P + LQ K + +IA G+ +G +Y WG + QLG+G
Sbjct: 296 RLGHGS-DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTT 354
Query: 382 DDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDS 440
+ + P + +LQ K + +ACG+ + A +
Sbjct: 355 NA---------------------------IQRPRLVAALQGKKVNRVACGSAHTLAWST 386
Score = 241 bits (618), Expect = 2e-75
Identities = 88/378 (23%), Positives = 154/378 (40%), Gaps = 57/378 (15%)
Query: 123 VQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSG--IVKIASG 180
+ ++ GT+Y WG + G +G K P E+++ V++ G
Sbjct: 4 HHHHSSGRENLYFQGSGTIYGWG--HNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGG 61
Query: 181 ADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP-LKRKHID--D 237
+T+ G L G G+LG S S P + ++ I
Sbjct: 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVST----------PTLLESIQHVFIKKVA 111
Query: 238 VFTGVYNT-FISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTML 296
V +G + +SS+G + ++G +LG + P +I+SL + +
Sbjct: 112 VNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC-------DRPRVIESLRGIEVVDV 164
Query: 297 ASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCV- 355
A+G HS + + G +Y +G+ YGRLG + SE +P + +LQ + IACG+
Sbjct: 165 AAGGAHSACVTAAGDLYTWGKGRYGRLGHSD-SEDQLKPKLVEALQGHRVVDIACGSGDA 223
Query: 356 -SFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 414
+ + + ++ WG G+ +LG G D P
Sbjct: 224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCK---------------------------VP 256
Query: 415 TPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQL 474
I SL + + CG+ S A+ G +Y WG G+ ++LG+G +D + P +++G L
Sbjct: 257 MKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--L 314
Query: 475 NNYTVLQVASGGQHSVIL 492
V+ +A+G H V
Sbjct: 315 QGKKVIAIATGSLHCVCC 332
Score = 194 bits (496), Expect = 1e-57
Identities = 84/327 (25%), Positives = 128/327 (39%), Gaps = 53/327 (16%)
Query: 174 IVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP-LKR 232
S + G + G +GQLG I G P L
Sbjct: 3 HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIE----------GAKVKVPTPCEALAT 52
Query: 233 KHIDDVFTGVYNT-FISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDK 291
+ G +++ G + A G +LG +E TP L++S+
Sbjct: 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESV-------STPTLLESIQHV 105
Query: 292 KFTMLA--SGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSI 349
+A SG H LAL+SEG++Y++G + G+LG N S P P I SL+ + +
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDV 164
Query: 350 ACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSE 409
A G S + + G LY WG G +LG+ +D L
Sbjct: 165 AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL------------------------ 200
Query: 410 PVTEPTPIPSLQDKTITSIACGNCV--SFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPM 467
+P + +LQ + IACG+ + + + ++ WG G+ +LG G D PM
Sbjct: 201 ---KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257
Query: 468 KIEGKQLNNYTVLQVASGGQHSVILAK 494
KI+ L V++V G Q SV L K
Sbjct: 258 KIDS--LTGLGVVKVECGSQFSVALTK 282
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 149 bits (378), Expect = 1e-41
Identities = 75/344 (21%), Positives = 113/344 (32%), Gaps = 93/344 (27%)
Query: 37 GVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCN 96
V+ G + P E V + G H + L GKV WG N
Sbjct: 2 TSVVAWGGNNDWGEATVP----------AEAQSGVDAIAGGYFHGLALK-GGKVLGWGAN 50
Query: 97 DEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGL 156
G L A S I+AG+ HS+A L+DG V AWG + G +
Sbjct: 51 LNGQLTMPAATQS-----------GVDAIAAGNYHSLA-LKDGEVIAWG--GNEDGQTTV 96
Query: 157 KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNA 216
E SG+ IA+GA L G ++ G GQ
Sbjct: 97 PAEAR----------SGVDAIAAGAWASYALKD-GKVIAWGDDSDGQTT----------- 134
Query: 217 RRGMSFLEPGEVPLK-RKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSG 275
VP + + + + GVY G ++A+G N + Q
Sbjct: 135 -----------VPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTT---------- 173
Query: 276 NTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 335
+ + + +A G HSLAL GK+ A+G + Y +
Sbjct: 174 ---------VPAEAQSGVDDVAGGIFHSLALKD-GKVIAWGDNRYKQT------------ 211
Query: 336 TPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNG 379
+P+ +++IA G S A+ + G + WG
Sbjct: 212 -TVPTEALSGVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSVQ 253
Score = 140 bits (354), Expect = 3e-38
Identities = 71/328 (21%), Positives = 115/328 (35%), Gaps = 97/328 (29%)
Query: 37 GVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCN 96
G VL G GQL + V + G H++ L DG+V WG N
Sbjct: 42 GKVLGWGANLNGQLTMP-----------AATQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89
Query: 97 DEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGL 156
++G AE S I+AG S AL +DG V AWG DS G +
Sbjct: 90 EDGQTTVPAEARS-----------GVDAIAAGAWASYAL-KDGKVIAWG--DDSDGQTTV 135
Query: 157 KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNA 216
E SG+ + G + + + G ++ G GQ
Sbjct: 136 PAEAQ----------SGVTALDGGVYTALAVKN-GGVIAWGDNYFGQTT----------- 173
Query: 217 RRGMSFLEPGEVPLKR-KHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSG 275
VP + +DDV G++++ G ++A+G N Y Q
Sbjct: 174 -----------VPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTT---------- 212
Query: 276 NTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEP 335
+ + + + +ASG+ +SLAL + GK+ A+G +++
Sbjct: 213 ---------VPTEALSGVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSVQS-------- 254
Query: 336 TPIPSLQDKTITSIACGNCVSFAIDSEG 363
++SI G ++A+
Sbjct: 255 ---------GVSSIEAGPNAAYALKGGS 273
Score = 130 bits (330), Expect = 7e-35
Identities = 64/405 (15%), Positives = 121/405 (29%), Gaps = 137/405 (33%)
Query: 88 GKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSF 147
V WG N++ I+ G H +AL + G V WG
Sbjct: 2 TSVVAWGGNNDWGEA----------TVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWG-- 48
Query: 148 RDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRI 207
+ +G + + + SG+ IA+G H + L G ++ G E GQ
Sbjct: 49 ANLNGQLTMPAA----------TQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTT-- 95
Query: 208 TQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEA 267
A +D + G + ++ G ++A+G ++ Q
Sbjct: 96 VPAEARSG-------------------VDAIAAGAWASYALKDGKVIAWGDDSDGQTT-- 134
Query: 268 DSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKN 327
+ + + T L G + +LA+ + G + A+G + +G+
Sbjct: 135 -----------------VPAEAQSGVTALDGGVYTALAVKN-GGVIAWGDNYFGQT---- 172
Query: 328 VSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNS 387
+P+ + +A G S A+
Sbjct: 173 ---------TVPAEAQSGVDDVAGGIFHSLALKD-------------------------- 197
Query: 388 EGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGW 447
GK+ A+G + Y + +P+ +++IA G S A+ + G + W
Sbjct: 198 -GKVIAWGDNRYKQT-------------TVPTEALSGVSAIASGEWYSLALKN-GKVIAW 242
Query: 448 GMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVIL 492
G V + +G + L
Sbjct: 243 GSSRTAPSSVQS------------------GVSSIEAGPNAAYAL 269
Score = 90.4 bits (225), Expect = 2e-20
Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 40/156 (25%)
Query: 37 GVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCN 96
G V+ G GQ + E V +V G H++ L DGKV WG N
Sbjct: 159 GGVIAWGDNYFGQTTVP-----------AEAQSGVDDVAGGIFHSLALK-DGKVIAWGDN 206
Query: 97 DEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGL 156
E S I++G+ +S+AL ++G V AWG +
Sbjct: 207 RYKQTTVPTEALS-----------GVSAIASGEWYSLAL-KNGKVIAWG--SSRTAPSSV 252
Query: 157 KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGN 192
+ SG+ I +G + L
Sbjct: 253 Q--------------SGVSSIEAGPNAAYALKGGSG 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 31.1 bits (70), Expect = 0.86
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 352 GNCVSFAIDSE---GVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVS 408
++F + ++ GWG G + + ++ F +L +
Sbjct: 503 AAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPPPAPA 562
Query: 409 EPVTEPTPIPSLQDKTITSIA-------CGNCVSFAIDSEGVL 444
E P P C C S G++
Sbjct: 563 PAKVERVPQPVTAAPEQVQAGKQLYGQFCSVCHGMGTISGGLI 605
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 27.6 bits (62), Expect = 9.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 331 PVTEPTPIPSLQDKTITSIACGNCVSFA 358
P T PT K++ S+ N + F+
Sbjct: 112 PTTNPTSTAIF--KSLISLKTRNGIIFS 137
Score = 27.6 bits (62), Expect = 9.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 410 PVTEPTPIPSLQDKTITSIACGNCVSFA 437
P T PT K++ S+ N + F+
Sbjct: 112 PTTNPTSTAIF--KSLISLKTRNGIIFS 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.399
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,494,067
Number of extensions: 457035
Number of successful extensions: 988
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 46
Length of query: 498
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 400
Effective length of database: 3,965,535
Effective search space: 1586214000
Effective search space used: 1586214000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)