RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1173
(498 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 183 bits (464), Expect = 2e-53
Identities = 164/419 (39%), Positives = 232/419 (55%), Gaps = 42/419 (10%)
Query: 34 TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
T G+VLT GQGD GQLGLG +VMERK ALV ++VV+ GGMHTVCL++ G+VY++
Sbjct: 12 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSF 71
Query: 94 GCNDEGALGREAEGDS-EFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152
GCNDEGALGR+ + E +P V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G
Sbjct: 72 GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNG 131
Query: 153 SMGLKGEGIQKTPLKLESV-SGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRS 211
+GL + + +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ +
Sbjct: 132 VIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELF 191
Query: 212 ASRNARRGMS-------FLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQ 263
A+R R+G+ + D F G Y TF IS +G + FGL+NY Q
Sbjct: 192 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 251
Query: 264 LGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRL 323
LG +E + S K + + GQHH++ ++SEGK Y+ GR +YGRL
Sbjct: 252 LGTPGTESCFIPQNLTSFKN-----STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306
Query: 324 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
GL +E + PT I L ++S+ACG V +A+ +G ++ WGMG YQLG G+++D
Sbjct: 307 GLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 364
Query: 384 ILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 442
PV L+++ + S++ G + + +
Sbjct: 365 -----------------------AWSPV--EMMGKQLENRVVLSVSSGGQHTVLLVKDK 398
Score = 176 bits (445), Expect = 8e-51
Identities = 114/429 (26%), Positives = 175/429 (40%), Gaps = 49/429 (11%)
Query: 80 HTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDG 139
H TE G V T G D G LG P V++P+ VQ AG H+V L + G
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSG 66
Query: 140 TVYAWGSFRDSHGSMGLKG--EGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAG 197
VY++G + G++G EG + P K+E +V++++G H LT G + G
Sbjct: 67 QVYSFGC--NDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124
Query: 198 CPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFG 257
++ L+ V + + + +++ G + G
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGND-------HLVMLTADGDLYTLG 177
Query: 258 LNNYSQLGEADSEVQKSGNTCFFTPHLI---------KSLSDKKFTMLASGQHHSLALNS 308
QLG G L+ S +F G + + A++
Sbjct: 178 CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 237
Query: 309 EGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSL-QDKTITSIACGNCVSFAIDSEGVLYG 367
EG +Y FG +Y +LG K+ + G + +DSEG Y
Sbjct: 238 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 297
Query: 368 WGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITS 427
G +YGRLGL +E + PT I L ++S
Sbjct: 298 LGR--------------------------AEYGRLGLGEGAEEKSIPTLISRL--PAVSS 329
Query: 428 IACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQ 487
+ACG V +A+ +G ++ WGMG YQLG G+++D P+++ GKQL N VL V+SGGQ
Sbjct: 330 VACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 389
Query: 488 HSVILAKPK 496
H+V+L K K
Sbjct: 390 HTVLLVKDK 398
Score = 80.6 bits (197), Expect = 5e-17
Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 42/234 (17%)
Query: 299 GQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFA 358
H G + G+ D G+LGL +P + +D + G +
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVC 61
Query: 359 IDSEGVLYGWGMGNGYQLGNGKEDD--------------------------ILNSEGKIY 392
+ G +Y +G + LG + L +G+++
Sbjct: 62 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 121
Query: 393 AFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNG 452
+G + + P+ D + +A GN + ++G LY G G
Sbjct: 122 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181
Query: 453 YQLGNGKEDDILEPMKIE--------------GKQLNNYTVLQVASGGQHSVIL 492
QLG E + + G + +
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI 235
Score = 72.1 bits (175), Expect = 3e-14
Identities = 58/290 (20%), Positives = 97/290 (33%), Gaps = 35/290 (12%)
Query: 42 CGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGAL 101
+ + G +GL + + V+ VV+V G H V LT DG +YT GC ++G L
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184
Query: 102 GREAEGDSE-----------------FIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAW 144
GR E + + + G + A+ +G VY +
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244
Query: 145 GSFRDSHGSMG--LKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQG 202
G Q S V + G H V + S G + G E G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304
Query: 203 QLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNY 261
+LG P + + V G + ++ G + A+G+
Sbjct: 305 RLG---------LGEGAEEKSIPTLISRLPA-VSSVACGASVGYAVTKDGRVFAWGMGTN 354
Query: 262 SQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGK 311
QLG E + + K L ++ ++SG H++ L + +
Sbjct: 355 YQLGTGQDE-----DAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 399
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 76.0 bits (185), Expect = 4e-16
Identities = 53/293 (18%), Positives = 98/293 (33%), Gaps = 40/293 (13%)
Query: 87 DGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGS 146
V WG N++ G++ I+ G H +AL + G V WG+
Sbjct: 3 ATSVVAWGGNNDW-------GEA---TVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGA 51
Query: 147 FRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGR 206
+ +G + + G+ IA+G H + L + G E GQ
Sbjct: 52 --NLNGQLTMPAATQS----------GVDAIAAGNYHSLALKDGEVI-AWGGNEDGQTTV 98
Query: 207 ITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGE 266
+ + +A ++ K D G ++ + A Y+
Sbjct: 99 PAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA 157
Query: 267 ADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLK 326
+ + +F + + + +A G HSLAL +GK+ A+G + Y +
Sbjct: 158 VKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTT-- 214
Query: 327 NVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNG 379
+P+ +++IA G S A+ + G + WG
Sbjct: 215 -----------VPTEALSGVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSVQ 255
Score = 60.5 bits (145), Expect = 7e-11
Identities = 55/329 (16%), Positives = 96/329 (29%), Gaps = 63/329 (19%)
Query: 35 GGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWG 94
V+ G + P E V + G H + L GKV WG
Sbjct: 2 AATSVVAWGGNNDWGEATVP----------AEAQSGVDAIAGGYFHGLALK-GGKVLGWG 50
Query: 95 CNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSM 154
N G L I+AG+ HS+AL + + G+
Sbjct: 51 ANLNGQLTM-----------PAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVP 99
Query: 155 GLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGR----ITQR 210
G+ + + A A G + +
Sbjct: 100 AEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK 159
Query: 211 SASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSE 270
+ A F + + +DDV G++++ G ++A+G N Y Q
Sbjct: 160 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTT----- 214
Query: 271 VQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSE 330
+ + + + +ASG+ +SLAL GK+ A+G +
Sbjct: 215 --------------VPTEALSGVSAIASGEWYSLAL-KNGKVIAWGSSRTAPSSV----- 254
Query: 331 PVTEPTPIPSLQDKTITSIACGNCVSFAI 359
++SI G ++A+
Sbjct: 255 ------------QSGVSSIEAGPNAAYAL 271
Score = 55.9 bits (133), Expect = 2e-09
Identities = 54/323 (16%), Positives = 97/323 (30%), Gaps = 68/323 (21%)
Query: 136 LEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLT 195
+ +V AWG + G + E+ SG+ IA G H + L G +L
Sbjct: 1 VAATSVVAWGG-NNDWGE----------ATVPAEAQSGVDAIAGGYFHGLALKG-GKVLG 48
Query: 196 AGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILA 255
G GQL + +D + G Y++ G ++A
Sbjct: 49 WGANLNGQLTMPAAT---------------------QSGVDAIAAGNYHSLALKDGEVIA 87
Query: 256 FGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAF 315
+G N Q + + + +A+G S A +GK+ A+
Sbjct: 88 WGGNEDGQTT-------------------VPAEARSGVDAIAAGAWASYA-LKDGKVIAW 127
Query: 316 GRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQ 375
G G+ + ++ + + V G
Sbjct: 128 GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDV 187
Query: 376 LGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVS 435
G L +GK+ A+G + Y + +P+ +++IA G S
Sbjct: 188 AGGIFHSLALK-DGKVIAWGDNRYKQTT-------------VPTEALSGVSAIASGEWYS 233
Query: 436 FAIDSEGVLYGWGMGNGYQLGNG 458
A+ + G + WG
Sbjct: 234 LALKN-GKVIAWGSSRTAPSSVQ 255
Score = 38.6 bits (88), Expect = 0.001
Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 41/251 (16%)
Query: 267 ADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLK 326
A + V G + + + + +A G H LAL GK+ +G + G+L +
Sbjct: 2 AATSVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMP 60
Query: 327 NVSEPVTEPTP--------------------IPSLQDKTITSIACGNCVSFAIDSEGVLY 366
++ + + + + ++ + L
Sbjct: 61 AATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK 120
Query: 367 GWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPT-----PIPSLQ 421
+ +G+ ++ + A Y L +KN +P+
Sbjct: 121 DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEA 180
Query: 422 DKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQ 481
+ +A G S A+ V WG Q E V
Sbjct: 181 QSGVDDVAGGIFHSLALKDGKV-IAWGDNRYKQTTVPTEAL--------------SGVSA 225
Query: 482 VASGGQHSVIL 492
+ASG +S+ L
Sbjct: 226 IASGEWYSLAL 236
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 31.2 bits (70), Expect = 0.28
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 57 MERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTV 116
+ R++F L + LD +V + TE G G E IP
Sbjct: 3 LFRQSF-LFDSLDLDHPMVAQTV----RTEQGVTLKLH----------QRGVLEVIPAQT 47
Query: 117 NLPKKAVQISAG 128
+ K + IS G
Sbjct: 48 DAATKNMVISCG 59
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 30.9 bits (68), Expect = 0.39
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 76 VGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDS---EFIPQTVNLPKKAVQISAGDSH- 131
+ G+V W A G G + + P T + + V ++ D
Sbjct: 19 IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 78
Query: 132 -SVALLEDGTVYAWGSFRDSH 151
+++ +G + G
Sbjct: 79 PGISMDGNGQIVVTGGNDAKK 99
Score = 28.6 bits (62), Expect = 1.7
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 79 MHTVCLTEDGKVYTWGCNDEGALGREAEGDSE---FIPQTVNLPKKAVQISAGDSHSVA- 134
HT + DG + G G ++ ++P+ K+ HS++
Sbjct: 291 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 350
Query: 135 LLEDGTVYAWGSFRDSHGS 153
LL DG V+ G +
Sbjct: 351 LLPDGRVFNGGGGLCGDCT 369
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit
{Escherichia coli [TaxId: 562]}
Length = 110
Score = 26.6 bits (59), Expect = 2.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 4 LLKKVLRKQAENPSQKVFVTSEAVPTLKCKT 34
L+ VLR +P Q + +T E + L +
Sbjct: 27 LVSDVLRALTVSPDQVLQLTPEKIAMLPQGS 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.399
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,800,742
Number of extensions: 83148
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 19
Length of query: 498
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,185,626
Effective search space: 484921034
Effective search space used: 484921034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.4 bits)