BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11730
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 103/112 (91%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
WCLFPT TP++L+KVT EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265
Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 122/215 (56%), Gaps = 52/215 (24%)
Query: 11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
++ +++KRI+E K+ ARPEL W Y + F V +NVER S +EF+
Sbjct: 1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 60
Query: 70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKF 129
E+YE+P KPVV+ E W+A KWTLE+L +KYRN QKF
Sbjct: 61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRN---------------------QKF 99
Query: 130 KCGEDNHGYS------------------------------HPRRKKLLDDYEVPIYFQDD 159
KCGEDN GYS HP+R+KLL+DY+VP +F DD
Sbjct: 100 KCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDD 159
Query: 160 LFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTN 194
LFQYAGE +RPPYRWFVMGP RSGTGIHIDPLGT+
Sbjct: 160 LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTS 194
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 103/112 (91%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
WCLFPT TP++L+KVT EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 207 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 266
Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 267 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 318
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 120/214 (56%), Gaps = 52/214 (24%)
Query: 12 DSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFIE 70
+ +++KRI+E K+ ARPEL W Y + F V +NVER S +EF+E
Sbjct: 3 NHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFVE 62
Query: 71 KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFK 130
+YE+P KPVV+ E W+A KWTLE+L +KYRN QKFK
Sbjct: 63 RYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRN---------------------QKFK 101
Query: 131 CGEDNHGYS------------------------------HPRRKKLLDDYEVPIYFQDDL 160
CGEDN GYS HP+R+KLL+DY+VP +F DDL
Sbjct: 102 CGEDNDGYSVKXKXKYYIEYXESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDL 161
Query: 161 FQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTN 194
FQYAGE +RPPYRWFV GP RSGTGIHIDPLGT+
Sbjct: 162 FQYAGEKRRPPYRWFVXGPPRSGTGIHIDPLGTS 195
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human
Lysine-Specific Demethylase 8 (Kdm8) In Complex With
N-Oxalylglycine (Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human
Lysine-Specific Demethylase 8 (Kdm8) In Complex With
N-Oxalylglycine (Nog)
Length = 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 50 IVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKL 99
++++ V R+H S Q F E++ P +PV++KGV ++W KW+LE +
Sbjct: 2 MLEKTVPRLHRP--SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYI 49
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVT 462
L + PGE +F+P +WH V LD + +V+
Sbjct: 205 LSCILSPGEILFIPVKYWHYVRALDLSFSVS 235
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKL 99
+++ V R+H S Q F E++ P +PV++KGV ++W KW+LE +
Sbjct: 12 LEKTVPRLHRP--SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYI 58
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVT 462
L + PGE +F+P +WH V LD + +V+
Sbjct: 214 LSCILSPGEILFIPVKYWHYVRALDLSFSVS 244
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 54 NVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKL 99
V R+H S Q F E++ P +PV++KGV ++W KW+LE +
Sbjct: 2 TVPRLHRP--SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYI 45
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVT 462
L + PGE +F+P +WH V LD + +V+
Sbjct: 201 LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 54 NVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKL 99
V R+H S Q F E++ P +PV++KGV ++W KW+LE +
Sbjct: 2 TVPRLHRP--SLQHFREQFLVPGRPVILKGVADHWPCXQKWSLEYI 45
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVT 462
L + PGE +F+P +WH V LD + +V+
Sbjct: 201 LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQ--EVIESLTLPNILMNTDNLEKCKF--YHG 348
VLDVGCG G+L ++ +GA HV D + E+ + L N + L + K H
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHL 101
Query: 349 DWGSLSAVIHSKFDIILTSETIYSVANYNK---LLTVWCLFPTHTPKDLLKVTSAEGGKQ 405
+ + +I L E++ Y + L+ +FP K + + E +
Sbjct: 102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD---KCSIHLAGLEDSQY 158
Query: 406 RDEAITWFSIIYPRTQLPSWP 426
+DE + ++ +Y P P
Sbjct: 159 KDEKLNYWQDVYGFDYSPFVP 179
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 270 KIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE 323
++ E F+++ +D + L+VLD+ G+G LGL L GAA V F + +Q
Sbjct: 28 RVRESLFNIVTARRD---LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQR 78
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 293 VLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDW 350
++D+GCG G++GL L N A V F D + + S L N+ N + L++C+F +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPXAVASSRL-NVETNXPEALDRCEFXINN- 283
Query: 351 GSLSAVIHSKFDIILTS 367
+LS V +F+ +L +
Sbjct: 284 -ALSGVEPFRFNAVLCN 299
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 36/171 (21%)
Query: 284 DNVAVDKLS-VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI-LMNTDNLE 341
+NV VDK +LD+GCG G++G+ L + + D N+ I+ L NI L N DN
Sbjct: 46 ENVVVDKDDDILDLGCGYGVIGI-ALADEVKSTTXADINRRAIK-LAKENIKLNNLDN-- 101
Query: 342 KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA---NYNKLLTVWCLFPTHTPKDLLKVT 398
+DI + +Y YNK++T P K++L
Sbjct: 102 -------------------YDIRVVHSDLYENVKDRKYNKIITNP---PIRAGKEVLHRI 139
Query: 399 SAEGGK-QRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGW 448
EG + +D W +I + S K V G ETV + GG+
Sbjct: 140 IEEGKELLKDNGEIWV-VIQTKQGAKSLAKYXKD---VFGNVETVTIKGGY 186
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 434 LVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGR 482
L+Q G+ + +P G H V N + + VT++F S + +H T R
Sbjct: 295 LIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELR 343
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 262 ETVVGPGDVLYIPXYWWHHIESLLNGGITITVNF 295
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470
G T+FVP GW H VL +A NF + N
Sbjct: 252 GHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLN 283
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 430 KPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470
K + V G T+FVP GW H VL +A NF + N
Sbjct: 334 KCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLN 374
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330
VLDVGCG G+L ++ GA V D ++ + +++ +
Sbjct: 49 VLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDI 86
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 248 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 281
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 265 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 298
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 295
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 295
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 295
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 264 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 297
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 433 ELVQGPGETVFVPGGWWHVVLN-LDTTVAVTQNF 465
E V GPG+ +++P WWH + + L+ + +T NF
Sbjct: 262 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 295
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL 340
DK+ VLDVGCG+G+L + GA + Y E +L+ ++NL
Sbjct: 159 DKI-VLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSNNL 205
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL 340
DK+ VLDVGCG+G+L + GA + Y E +L+ ++NL
Sbjct: 51 DKI-VLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSNNL 97
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL 340
DK+ VLDVGCG+G+L + GA + Y E +L+ ++NL
Sbjct: 47 DKI-VLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSNNL 93
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL 340
DK+ VLDVGCG+G+L + GA + Y E +L+ ++NL
Sbjct: 46 DKI-VLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSNNL 92
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL 340
DK+ VLDVGCG+G+L + GA + Y E +L+ ++NL
Sbjct: 42 DKI-VLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSNNL 88
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPV---VYH--KTIRGRPKLSKKWY 490
G+T+ +P GW H VL ++ NF N + VYH IR + +K+Y
Sbjct: 373 GQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHLENAIRKEIRSEEKFY 429
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 8/153 (5%)
Query: 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH 347
+ VLD+GCG G LY + G S+ D+N+ I L T E
Sbjct: 119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSW-DHNENSIA------FLNETKEKENLNIST 171
Query: 348 GDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRD 407
+ +A I +D I+++ ++ N ++ ++ HT + A
Sbjct: 172 ALYDINAANIQENYDFIVST-VVFXFLNRERVPSIIKNXKEHTNVGGYNLIVAAXSTDDV 230
Query: 408 EAITWFSIIYPRTQLPSWPTEWKPLELVQGPGE 440
FS + +L + +W+ LE + GE
Sbjct: 231 PCPLPFSFTFAENELKEYYKDWEFLEYNENXGE 263
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP--NILMNTDNLEKCKF 345
VLDVGCG G+L ++ GA V D ++ + +++ + N L +T L K K
Sbjct: 68 VLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 122
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 214 PIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKI 271
PIDEIL + E G QV+ + +S +LL + Y+ V S T + +V E G K+
Sbjct: 13 PIDEILIKTLREKGIQVDYMPEISKEELLNI-IGNYDIIVVRSRTKVTKDVIEKGKKL 69
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 70 EKYEKPNK------PVVIKGVTENWN--------ATYKWTLEKLGKKYRNQKFKCGEDN 114
EK E P K P+ I G +N+N A Y +G KYRN F+ ED+
Sbjct: 186 EKIEAPRKRIEWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDH 244
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470
G+T+F+P GW H VL +A NF N
Sbjct: 235 GQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLN 266
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470
G+T+F+P GW H VL +A NF N
Sbjct: 232 GQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLN 263
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDY-NQEVIESLTLPNILMNTDN 339
+V ++G GAGL+ + + GA V DY + E++ SL NI +T N
Sbjct: 82 TVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLE-SNIREHTAN 129
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470
G+T+F+P GW H VL +A NF N
Sbjct: 224 GQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLN 255
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 439 GETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNF 471
G+T+F+P GW H VL +A NF N
Sbjct: 308 GQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNI 340
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 38/174 (21%)
Query: 266 EGGYKIWECTFDLL----NFIKDNVAVDKL--------------SVLDVGCGAGLLGLYT 307
E Y + CT+ L + + D V +D +VLDVG G+G+L +++
Sbjct: 22 EVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWS 81
Query: 308 LMNGAAHV------SFQDYNQEVIESLTLPNILMNTDNL-------EKCKFYHGDWGSLS 354
GA V D+ + ++++ L +I+ + EK +W
Sbjct: 82 AQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYF 141
Query: 355 AVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDE 408
+ S FD ++++ + L ++P+H L + S ++R++
Sbjct: 142 LLRESMFDSVISARDRW-------LKPTGVMYPSHARMWLAPIKSNIADRKRND 188
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 384 CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIY 417
C F H ++L+ +T+A G Q + TWF + Y
Sbjct: 183 CCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYY 216
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 384 CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIY 417
C F H ++L+ +T+A G Q + TWF + Y
Sbjct: 170 CCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYY 203
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 384 CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIY 417
C F H ++L+ +T+A G Q + TWF + Y
Sbjct: 198 CCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYY 231
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV------SFQDYNQEVIESLTLPNILMNTDN------- 339
VLDVG G G+L ++ GA V S DY +++++ L +++
Sbjct: 61 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 120
Query: 340 -LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVT 398
+EK +W S + +L + + + +FP + L VT
Sbjct: 121 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-------GLIFP---DRATLYVT 170
Query: 399 SAEGGKQRDEAITWFSIIY 417
+ E + +D I W+ +Y
Sbjct: 171 AIEDRQYKDYKIHWWENVY 189
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV------SFQDYNQEVIESLTLPNILMNTDN------- 339
VLDVG G G+L ++ GA V S DY +++++ L +++
Sbjct: 64 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 123
Query: 340 -LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVT 398
+EK +W S + +L + + + +FP + L VT
Sbjct: 124 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-------GLIFP---DRATLYVT 173
Query: 399 SAEGGKQRDEAITWFSIIY 417
+ E + +D I W+ +Y
Sbjct: 174 AIEDRQYKDYKIHWWENVY 192
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV------SFQDYNQEVIESLTLPNILMNTDN------- 339
VLDVG G G+L ++ GA V S DY +++++ L +++
Sbjct: 70 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 129
Query: 340 -LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVT 398
+EK +W S + +L + + + +FP + L VT
Sbjct: 130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-------GLIFP---DRATLYVT 179
Query: 399 SAEGGKQRDEAITWFSIIY 417
+ E + +D I W+ +Y
Sbjct: 180 AIEDRQYKDYKIHWWENVY 198
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 13 SRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEF 68
S AR R E KRA LNGK+ +LG K + VE++ K+ PQ
Sbjct: 59 SFARYRTTEESKRAYVTLNGKEVVDDLG-----QKITLYLNFVEKVQWKELRPQAL 109
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV------SFQDYNQEVIESLTLPNILMNTDN------- 339
VLDVG G G+L ++ GA V S DY +++++ L +++
Sbjct: 74 VLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL 133
Query: 340 -LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVT 398
+EK +W S + +L + + L +FP + L VT
Sbjct: 134 PVEKVDIIISEWMGYCLFYQSMLNTVLHARDKW-------LAPDGLIFP---DRATLYVT 183
Query: 399 SAEGGKQRDEAITWFSIIY 417
+ E + +D I W+ +Y
Sbjct: 184 AIEDRQYKDYKIHWWENVY 202
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 331 PNI--LMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV 373
PNI L N D L++C F+ D+G ++H+ +T ++Y +
Sbjct: 84 PNIKGLENDDELKECLFHFWDFGG-QEIMHASHQFFMTRSSVYML 127
>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 13 SRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEF 68
S AR R E KRA LNGK+ +LG K + VE++ K+ PQ
Sbjct: 59 SFARYRTTEESKRAYVTLNGKEVVDDLG-----QKITLYLNFVEKVQWKELRPQAL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,697,432
Number of Sequences: 62578
Number of extensions: 783753
Number of successful extensions: 2052
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 73
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)