Query psy11730
Match_columns 496
No_of_seqs 401 out of 3525
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:26:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2130|consensus 100.0 1.3E-79 2.8E-84 577.9 15.4 311 8-495 6-326 (407)
2 PF13621 Cupin_8: Cupin-like d 99.9 3.9E-28 8.5E-33 236.5 3.6 124 65-195 1-155 (251)
3 KOG2131|consensus 99.9 2.7E-24 5.8E-29 207.9 9.6 153 51-203 26-230 (427)
4 KOG2508|consensus 99.7 1.2E-17 2.7E-22 161.5 10.7 147 51-213 20-194 (437)
5 KOG2132|consensus 99.7 5.3E-18 1.1E-22 163.1 3.1 131 60-195 132-274 (355)
6 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.7E-14 5.8E-19 134.1 5.8 137 245-389 13-155 (243)
7 KOG1499|consensus 99.5 4.8E-14 1E-18 138.9 5.4 165 242-422 21-197 (346)
8 COG2226 UbiE Methylase involve 99.4 3.5E-13 7.5E-18 128.7 8.1 97 289-389 51-150 (238)
9 COG2230 Cfa Cyclopropane fatty 99.4 1.1E-12 2.4E-17 127.6 9.2 112 272-389 54-170 (283)
10 PF08003 Methyltransf_9: Prote 99.4 4.4E-13 9.5E-18 130.3 4.2 100 287-390 113-214 (315)
11 KOG1270|consensus 99.3 7.2E-13 1.6E-17 125.3 4.6 96 289-390 89-190 (282)
12 PF13847 Methyltransf_31: Meth 99.3 7.1E-12 1.5E-16 112.8 9.5 98 289-389 3-104 (152)
13 PLN02233 ubiquinone biosynthes 99.3 7.2E-12 1.5E-16 123.1 9.4 101 289-390 73-177 (261)
14 PF02353 CMAS: Mycolic acid cy 99.3 4.6E-12 1E-16 124.7 7.8 113 272-390 44-161 (273)
15 PF08241 Methyltransf_11: Meth 99.3 5.7E-12 1.2E-16 103.1 7.1 89 294-389 1-91 (95)
16 PF01209 Ubie_methyltran: ubiE 99.3 3.4E-12 7.4E-17 122.9 6.5 99 288-390 46-148 (233)
17 PLN02244 tocopherol O-methyltr 99.3 1.2E-11 2.5E-16 126.2 10.2 112 276-390 99-218 (340)
18 PRK15068 tRNA mo(5)U34 methylt 99.3 1.1E-11 2.3E-16 125.3 9.7 106 281-390 113-221 (322)
19 PF12847 Methyltransf_18: Meth 99.3 7.7E-12 1.7E-16 106.2 7.3 98 289-389 1-105 (112)
20 TIGR00452 methyltransferase, p 99.3 1.4E-11 3.1E-16 123.3 9.0 107 280-390 112-220 (314)
21 PLN02396 hexaprenyldihydroxybe 99.3 7.7E-12 1.7E-16 125.7 7.0 99 288-390 130-230 (322)
22 PRK11036 putative S-adenosyl-L 99.2 1.5E-11 3.3E-16 120.4 7.7 101 287-390 42-144 (255)
23 PRK14103 trans-aconitate 2-met 99.2 3.5E-11 7.5E-16 117.9 9.5 91 288-390 28-121 (255)
24 PRK05785 hypothetical protein; 99.2 5.1E-11 1.1E-15 114.5 9.9 97 278-387 41-139 (226)
25 PRK10258 biotin biosynthesis p 99.2 2.2E-10 4.9E-15 111.9 14.1 101 279-389 31-134 (251)
26 PF08242 Methyltransf_12: Meth 99.2 5E-12 1.1E-16 105.1 1.1 93 294-389 1-97 (99)
27 PRK11207 tellurite resistance 99.2 7.6E-11 1.7E-15 110.9 8.8 97 288-390 29-129 (197)
28 PF05175 MTS: Methyltransferas 99.2 8.1E-11 1.8E-15 108.1 8.5 111 272-390 17-135 (170)
29 PRK01683 trans-aconitate 2-met 99.1 1.4E-10 3.1E-15 113.7 9.8 101 279-389 20-124 (258)
30 COG2263 Predicted RNA methylas 99.1 1.6E-10 3.5E-15 104.7 9.2 90 276-373 32-121 (198)
31 PF10294 Methyltransf_16: Puta 99.1 9.8E-11 2.1E-15 107.8 7.9 122 266-389 15-150 (173)
32 PF13649 Methyltransf_25: Meth 99.1 7.9E-11 1.7E-15 98.4 5.8 85 293-382 1-92 (101)
33 PTZ00098 phosphoethanolamine N 99.1 2.5E-10 5.5E-15 112.2 10.2 106 279-390 41-151 (263)
34 TIGR02072 BioC biotin biosynth 99.1 2.6E-10 5.7E-15 109.9 9.7 105 277-389 22-129 (240)
35 PLN02336 phosphoethanolamine N 99.1 3.5E-10 7.5E-15 120.8 11.2 97 289-390 266-364 (475)
36 PF07021 MetW: Methionine bios 99.1 1.7E-10 3.7E-15 105.6 7.3 84 289-382 13-97 (193)
37 COG4123 Predicted O-methyltran 99.1 1E-10 2.2E-15 111.9 6.1 108 264-376 22-131 (248)
38 TIGR02752 MenG_heptapren 2-hep 99.1 3E-10 6.6E-15 109.4 9.5 97 289-389 45-145 (231)
39 TIGR00138 gidB 16S rRNA methyl 99.1 2.2E-10 4.7E-15 106.2 7.9 95 288-389 41-136 (181)
40 COG4106 Tam Trans-aconitate me 99.1 1.2E-10 2.7E-15 107.0 5.8 93 288-390 29-124 (257)
41 TIGR03587 Pse_Me-ase pseudamin 99.1 3.8E-10 8.2E-15 106.7 8.7 84 289-382 43-129 (204)
42 TIGR00477 tehB tellurite resis 99.1 3.4E-10 7.4E-15 106.3 8.2 95 289-390 30-128 (195)
43 PF13489 Methyltransf_23: Meth 99.1 4.3E-10 9.2E-15 101.5 7.9 87 288-389 21-109 (161)
44 PRK15451 tRNA cmo(5)U34 methyl 99.0 4.4E-10 9.6E-15 109.6 8.2 112 274-390 41-159 (247)
45 KOG1540|consensus 99.0 8.3E-10 1.8E-14 104.0 9.4 127 287-421 98-234 (296)
46 PRK15001 SAM-dependent 23S rib 99.0 7.3E-10 1.6E-14 113.5 9.9 99 290-390 229-335 (378)
47 PRK00107 gidB 16S rRNA methylt 99.0 6.3E-10 1.4E-14 103.5 8.0 92 290-390 46-140 (187)
48 TIGR02081 metW methionine bios 99.0 9.2E-10 2E-14 103.3 8.8 84 289-382 13-97 (194)
49 PLN02490 MPBQ/MSBQ methyltrans 99.0 1.4E-09 3E-14 109.9 10.4 95 289-390 113-210 (340)
50 COG2890 HemK Methylase of poly 99.0 8.4E-10 1.8E-14 109.2 8.6 97 272-374 93-190 (280)
51 PRK12335 tellurite resistance 99.0 7E-10 1.5E-14 110.6 7.8 95 288-389 119-217 (287)
52 TIGR00537 hemK_rel_arch HemK-r 99.0 1.8E-09 3.9E-14 100.0 10.0 93 272-375 5-97 (179)
53 PRK06202 hypothetical protein; 99.0 9.1E-10 2E-14 106.3 7.9 87 289-382 60-153 (232)
54 smart00828 PKS_MT Methyltransf 99.0 7.4E-10 1.6E-14 106.2 7.2 96 291-390 1-99 (224)
55 PRK11873 arsM arsenite S-adeno 99.0 1.1E-09 2.4E-14 108.3 8.4 98 289-390 77-178 (272)
56 PLN02585 magnesium protoporphy 99.0 1.6E-09 3.4E-14 108.8 9.6 94 278-376 133-228 (315)
57 PRK11705 cyclopropane fatty ac 99.0 1.7E-09 3.7E-14 111.8 9.4 102 278-389 155-261 (383)
58 COG2264 PrmA Ribosomal protein 99.0 9.9E-10 2.1E-14 107.9 7.0 93 271-368 145-237 (300)
59 PF03848 TehB: Tellurite resis 99.0 1.5E-09 3.3E-14 100.6 7.8 96 287-389 28-127 (192)
60 PRK08317 hypothetical protein; 99.0 3.5E-09 7.6E-14 101.9 10.3 108 278-390 7-119 (241)
61 TIGR00740 methyltransferase, p 98.9 2.1E-09 4.5E-14 104.3 8.6 103 282-389 46-155 (239)
62 PRK14967 putative methyltransf 98.9 2.5E-09 5.4E-14 102.7 9.1 101 267-373 14-114 (223)
63 PF06325 PrmA: Ribosomal prote 98.9 1.6E-09 3.5E-14 107.3 7.3 95 271-373 144-238 (295)
64 TIGR02021 BchM-ChlM magnesium 98.9 3.1E-09 6.8E-14 101.6 8.8 88 288-382 54-143 (219)
65 PRK07580 Mg-protoporphyrin IX 98.9 4.3E-09 9.3E-14 101.2 8.9 98 278-382 52-151 (230)
66 PRK14966 unknown domain/N5-glu 98.9 4.5E-09 9.7E-14 108.0 9.3 97 272-373 235-332 (423)
67 KOG1500|consensus 98.9 6.4E-10 1.4E-14 108.0 2.8 125 238-375 134-258 (517)
68 PRK10909 rsmD 16S rRNA m(2)G96 98.9 5.6E-09 1.2E-13 98.0 8.8 81 288-371 52-132 (199)
69 PRK13944 protein-L-isoaspartat 98.9 9.3E-09 2E-13 97.4 10.4 105 278-389 60-167 (205)
70 PF13659 Methyltransf_26: Meth 98.9 3.1E-09 6.6E-14 90.9 6.2 82 290-373 1-83 (117)
71 smart00650 rADc Ribosomal RNA 98.9 7.1E-09 1.5E-13 95.1 8.8 86 280-372 3-89 (169)
72 TIGR00406 prmA ribosomal prote 98.9 1.1E-08 2.4E-13 101.9 10.8 109 272-389 143-253 (288)
73 KOG4300|consensus 98.9 3.8E-09 8.2E-14 96.6 6.2 97 291-390 78-177 (252)
74 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.2E-08 2.7E-13 96.9 9.9 114 275-389 20-146 (213)
75 COG2813 RsmC 16S RNA G1207 met 98.9 8.1E-09 1.8E-13 100.9 8.7 108 274-390 146-261 (300)
76 TIGR02469 CbiT precorrin-6Y C5 98.8 1.7E-08 3.7E-13 86.8 9.7 95 289-389 19-116 (124)
77 PRK00216 ubiE ubiquinone/menaq 98.8 1.6E-08 3.5E-13 97.5 10.4 98 289-389 51-152 (239)
78 PF05401 NodS: Nodulation prot 98.8 8.3E-09 1.8E-13 94.8 7.6 92 290-389 44-140 (201)
79 PRK13942 protein-L-isoaspartat 98.8 1.8E-08 3.9E-13 95.9 10.2 107 275-389 61-170 (212)
80 PRK11088 rrmA 23S rRNA methylt 98.8 1.5E-08 3.2E-13 100.3 10.0 84 277-369 73-160 (272)
81 PRK03522 rumB 23S rRNA methylu 98.8 7.3E-09 1.6E-13 104.6 7.4 80 288-371 172-251 (315)
82 PRK00121 trmB tRNA (guanine-N( 98.8 7.1E-09 1.5E-13 97.9 6.5 80 289-371 40-122 (202)
83 TIGR03534 RF_mod_PrmC protein- 98.8 1.8E-08 3.9E-13 98.1 9.5 99 272-375 70-169 (251)
84 TIGR00080 pimt protein-L-isoas 98.8 1.9E-08 4.2E-13 95.9 9.3 94 277-374 64-160 (215)
85 PRK08287 cobalt-precorrin-6Y C 98.8 2.7E-08 5.8E-13 92.8 9.8 92 289-389 31-125 (187)
86 PRK09489 rsmC 16S ribosomal RN 98.8 1.7E-08 3.7E-13 102.7 8.9 94 290-390 197-298 (342)
87 PHA03411 putative methyltransf 98.8 1.5E-08 3.2E-13 98.6 7.9 76 289-374 64-140 (279)
88 PRK06922 hypothetical protein; 98.8 1.3E-08 2.8E-13 109.2 8.2 98 289-390 418-532 (677)
89 PRK14968 putative methyltransf 98.8 3.2E-08 7E-13 91.8 9.9 94 272-372 9-102 (188)
90 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 3.6E-08 7.9E-13 94.0 10.4 96 288-389 38-137 (223)
91 PLN02336 phosphoethanolamine N 98.8 2.1E-08 4.6E-13 107.1 9.3 96 288-389 36-136 (475)
92 TIGR01983 UbiG ubiquinone bios 98.8 1.6E-08 3.5E-13 96.8 7.6 98 288-389 44-143 (224)
93 PRK05134 bifunctional 3-demeth 98.8 1.9E-08 4.2E-13 97.0 8.0 106 279-389 37-145 (233)
94 PHA03412 putative methyltransf 98.7 1.8E-08 4E-13 95.7 7.2 76 289-374 49-128 (241)
95 smart00138 MeTrc Methyltransfe 98.7 2.3E-08 4.9E-13 98.4 7.9 100 289-389 99-236 (264)
96 TIGR03533 L3_gln_methyl protei 98.7 3.4E-08 7.4E-13 98.2 9.1 81 289-373 121-202 (284)
97 TIGR00091 tRNA (guanine-N(7)-) 98.7 1.8E-08 3.8E-13 94.6 6.3 82 289-373 16-100 (194)
98 PRK11805 N5-glutamine S-adenos 98.7 3.4E-08 7.3E-13 99.2 8.6 79 291-373 135-214 (307)
99 PRK13255 thiopurine S-methyltr 98.7 6.2E-08 1.3E-12 92.5 9.6 112 277-389 25-149 (218)
100 TIGR00536 hemK_fam HemK family 98.7 4.6E-08 9.9E-13 97.4 8.7 99 273-375 96-197 (284)
101 PLN02672 methionine S-methyltr 98.7 4.5E-08 9.7E-13 111.4 9.6 110 272-381 99-224 (1082)
102 PRK00274 ksgA 16S ribosomal RN 98.7 4.3E-08 9.4E-13 96.9 8.5 90 276-373 28-118 (272)
103 PRK00312 pcm protein-L-isoaspa 98.7 9.8E-08 2.1E-12 90.8 10.6 94 275-373 63-157 (212)
104 PRK00517 prmA ribosomal protei 98.7 4.5E-08 9.8E-13 95.6 7.9 87 272-370 103-189 (250)
105 COG4976 Predicted methyltransf 98.7 4.4E-09 9.5E-14 97.6 0.4 109 272-389 108-219 (287)
106 KOG1541|consensus 98.7 4.4E-08 9.5E-13 90.6 6.8 76 289-373 50-125 (270)
107 TIGR03704 PrmC_rel_meth putati 98.7 6.3E-08 1.4E-12 94.5 8.2 95 273-373 68-166 (251)
108 PRK14896 ksgA 16S ribosomal RN 98.7 9.2E-08 2E-12 93.9 9.2 89 275-372 14-103 (258)
109 PRK00377 cbiT cobalt-precorrin 98.7 1E-07 2.2E-12 89.8 9.1 97 288-389 39-139 (198)
110 PLN03075 nicotianamine synthas 98.6 1.1E-07 2.4E-12 93.9 9.6 99 288-389 122-227 (296)
111 PRK13168 rumA 23S rRNA m(5)U19 98.6 5.8E-08 1.3E-12 102.7 8.1 94 276-373 283-380 (443)
112 PRK09328 N5-glutamine S-adenos 98.6 1.2E-07 2.6E-12 93.8 9.9 98 272-374 90-189 (275)
113 PRK01544 bifunctional N5-gluta 98.6 7.3E-08 1.6E-12 103.2 8.8 81 290-374 139-220 (506)
114 PRK14121 tRNA (guanine-N(7)-)- 98.6 1.2E-07 2.6E-12 97.0 8.7 84 287-373 120-205 (390)
115 PRK11188 rrmJ 23S rRNA methylt 98.6 1.7E-07 3.7E-12 89.0 9.2 86 275-374 36-131 (209)
116 TIGR02085 meth_trns_rumB 23S r 98.6 7.9E-08 1.7E-12 99.4 6.9 80 288-371 232-311 (374)
117 cd02440 AdoMet_MTases S-adenos 98.6 1.9E-07 4.1E-12 76.3 7.6 88 292-382 1-89 (107)
118 KOG1271|consensus 98.6 1.3E-07 2.9E-12 84.9 6.8 93 275-370 48-146 (227)
119 KOG3420|consensus 98.6 1.1E-07 2.3E-12 82.3 5.8 92 277-373 35-127 (185)
120 TIGR00478 tly hemolysin TlyA f 98.6 1.9E-07 4.2E-12 89.3 8.1 105 272-381 57-163 (228)
121 PRK07402 precorrin-6B methylas 98.6 2.7E-07 5.9E-12 86.7 9.0 102 281-389 31-136 (196)
122 PRK04266 fibrillarin; Provisio 98.5 4.6E-07 1E-11 86.9 10.3 96 268-368 46-149 (226)
123 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.1E-07 2.5E-12 105.8 6.4 82 289-371 538-619 (702)
124 KOG3010|consensus 98.5 2.8E-07 6E-12 86.7 7.9 102 292-401 36-139 (261)
125 PF03602 Cons_hypoth95: Conser 98.5 1.1E-07 2.5E-12 88.1 5.3 101 278-381 32-135 (183)
126 TIGR00095 RNA methyltransferas 98.5 1.6E-07 3.4E-12 87.8 6.2 91 288-381 48-141 (189)
127 PRK13943 protein-L-isoaspartat 98.5 3.4E-07 7.4E-12 92.2 9.0 92 278-373 68-162 (322)
128 PTZ00338 dimethyladenosine tra 98.5 2.6E-07 5.6E-12 92.1 8.0 93 276-374 22-115 (294)
129 PRK15128 23S rRNA m(5)C1962 me 98.5 1.4E-07 3.1E-12 97.8 6.3 83 289-372 220-305 (396)
130 KOG3191|consensus 98.5 1.8E-07 3.9E-12 84.1 5.9 137 263-422 17-159 (209)
131 PRK11727 23S rRNA mA1618 methy 98.5 3.7E-07 8E-12 91.6 7.8 86 289-375 114-204 (321)
132 KOG2904|consensus 98.5 5.3E-07 1.2E-11 86.1 8.3 93 287-381 146-243 (328)
133 TIGR01177 conserved hypothetic 98.5 3.8E-07 8.2E-12 92.8 8.0 91 277-372 169-260 (329)
134 PRK04457 spermidine synthase; 98.5 7E-07 1.5E-11 87.8 9.3 77 289-367 66-143 (262)
135 COG2518 Pcm Protein-L-isoaspar 98.4 7.4E-07 1.6E-11 83.1 8.8 98 272-374 54-152 (209)
136 COG2265 TrmA SAM-dependent met 98.4 3.5E-07 7.7E-12 95.5 7.4 89 277-369 280-371 (432)
137 TIGR00479 rumA 23S rRNA (uraci 98.4 3.7E-07 8.1E-12 96.3 7.6 90 277-370 279-372 (431)
138 KOG2920|consensus 98.4 2.4E-07 5.3E-12 89.5 5.4 127 250-379 73-215 (282)
139 PF01135 PCMT: Protein-L-isoas 98.4 5.7E-07 1.2E-11 85.1 7.8 99 277-381 59-160 (209)
140 COG2242 CobL Precorrin-6B meth 98.4 7.6E-07 1.7E-11 81.3 8.0 96 286-389 31-129 (187)
141 PRK05031 tRNA (uracil-5-)-meth 98.4 3.6E-07 7.8E-12 94.0 6.7 90 277-370 194-298 (362)
142 TIGR02716 C20_methyl_CrtF C-20 98.4 1E-06 2.2E-11 88.7 9.2 104 280-389 139-248 (306)
143 PRK00811 spermidine synthase; 98.4 7.2E-07 1.6E-11 88.7 7.7 81 288-368 75-158 (283)
144 TIGR02143 trmA_only tRNA (urac 98.4 5E-07 1.1E-11 92.6 6.8 89 277-369 185-288 (353)
145 PRK14903 16S rRNA methyltransf 98.4 1.7E-06 3.7E-11 91.0 10.8 147 265-419 214-387 (431)
146 PRK04148 hypothetical protein; 98.4 1.3E-06 2.8E-11 76.1 8.2 93 278-381 4-99 (134)
147 TIGR03438 probable methyltrans 98.4 9.3E-07 2E-11 88.7 7.9 99 289-389 63-171 (301)
148 PTZ00146 fibrillarin; Provisio 98.4 2.5E-06 5.5E-11 84.0 10.7 116 268-390 106-232 (293)
149 KOG1356|consensus 98.4 1.3E-07 2.8E-12 101.8 1.7 55 428-482 795-849 (889)
150 TIGR00755 ksgA dimethyladenosi 98.4 1.6E-06 3.5E-11 84.8 9.3 89 275-372 14-106 (253)
151 TIGR00446 nop2p NOL1/NOP2/sun 98.4 1E-06 2.2E-11 86.8 7.7 126 288-420 70-221 (264)
152 PRK14902 16S rRNA methyltransf 98.3 1.2E-06 2.6E-11 92.8 8.7 80 289-371 250-331 (444)
153 COG3897 Predicted methyltransf 98.3 1.3E-06 2.8E-11 79.7 6.8 102 272-381 61-163 (218)
154 COG0742 N6-adenine-specific me 98.3 1.4E-06 3.1E-11 79.9 7.2 82 288-371 42-125 (187)
155 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.2E-06 2.5E-11 89.9 7.2 89 277-369 184-287 (352)
156 PRK14904 16S rRNA methyltransf 98.3 1.8E-06 4E-11 91.4 8.8 124 288-419 249-398 (445)
157 PRK13256 thiopurine S-methyltr 98.3 3.8E-06 8.2E-11 80.2 9.7 99 275-374 29-138 (226)
158 PRK10901 16S rRNA methyltransf 98.3 2.7E-06 5.8E-11 89.7 9.3 80 288-371 243-324 (427)
159 TIGR00438 rrmJ cell division p 98.2 3.9E-06 8.4E-11 78.3 8.3 81 275-369 17-107 (188)
160 PRK14901 16S rRNA methyltransf 98.2 3.4E-06 7.4E-11 89.1 8.6 126 288-419 251-405 (434)
161 TIGR00563 rsmB ribosomal RNA s 98.2 6.1E-06 1.3E-10 86.9 9.0 127 288-419 237-389 (426)
162 PLN02781 Probable caffeoyl-CoA 98.1 3.6E-06 7.7E-11 81.4 5.8 78 289-368 68-152 (234)
163 COG0030 KsgA Dimethyladenosine 98.1 1E-05 2.2E-10 78.4 8.9 94 275-374 15-109 (259)
164 PRK01581 speE spermidine synth 98.1 5.3E-06 1.2E-10 83.9 7.2 81 288-368 149-234 (374)
165 PRK03612 spermidine synthase; 98.1 6.4E-06 1.4E-10 88.8 7.5 84 289-372 297-385 (521)
166 PF09445 Methyltransf_15: RNA 98.1 4E-06 8.7E-11 75.7 4.8 77 291-370 1-79 (163)
167 PF05185 PRMT5: PRMT5 arginine 98.1 7.9E-06 1.7E-10 86.0 7.7 80 290-373 187-271 (448)
168 TIGR00417 speE spermidine synt 98.0 1.1E-05 2.4E-10 79.7 7.7 81 289-369 72-154 (270)
169 PF05724 TPMT: Thiopurine S-me 98.0 9.1E-06 2E-10 77.5 6.7 98 275-373 23-129 (218)
170 PF02475 Met_10: Met-10+ like- 98.0 1.4E-05 3E-10 75.0 7.7 89 289-381 101-190 (200)
171 COG1092 Predicted SAM-dependen 98.0 6E-06 1.3E-10 84.8 5.7 99 271-372 201-302 (393)
172 PRK00050 16S rRNA m(4)C1402 me 98.0 1.3E-05 2.7E-10 79.7 7.5 97 278-379 7-111 (296)
173 COG3963 Phospholipid N-methylt 98.0 2.6E-05 5.7E-10 69.5 8.3 98 271-376 29-133 (194)
174 KOG2187|consensus 98.0 7.6E-06 1.6E-10 84.9 5.4 74 277-354 370-444 (534)
175 KOG0820|consensus 98.0 2.8E-05 6.1E-10 74.5 8.6 92 276-373 44-136 (315)
176 PLN02366 spermidine synthase 98.0 2.5E-05 5.4E-10 78.4 8.8 82 288-369 90-174 (308)
177 PF01170 UPF0020: Putative RNA 98.0 1.7E-05 3.8E-10 73.3 6.9 94 277-373 15-119 (179)
178 PF03291 Pox_MCEL: mRNA cappin 97.9 2.3E-05 4.9E-10 79.4 7.4 118 272-389 44-180 (331)
179 PLN02232 ubiquinone biosynthes 97.9 1.4E-05 2.9E-10 72.7 4.7 74 316-390 1-76 (160)
180 PF02390 Methyltransf_4: Putat 97.9 3E-05 6.6E-10 72.7 6.6 80 291-373 19-101 (195)
181 PRK04338 N(2),N(2)-dimethylgua 97.9 1.9E-05 4.1E-10 81.7 5.6 76 290-369 58-134 (382)
182 COG2850 Uncharacterized conser 97.8 2.6E-05 5.6E-10 77.6 6.0 116 61-195 13-143 (383)
183 PF10672 Methyltrans_SAM: S-ad 97.8 2.4E-05 5.2E-10 77.4 5.5 97 272-371 108-206 (286)
184 PF02373 JmjC: JmjC domain, hy 97.8 1.5E-05 3.4E-10 67.6 3.2 39 427-465 76-114 (114)
185 KOG1975|consensus 97.8 2.1E-05 4.5E-10 77.0 4.2 102 289-390 117-232 (389)
186 PF01596 Methyltransf_3: O-met 97.8 3.2E-05 6.9E-10 73.0 5.1 79 289-369 45-130 (205)
187 PLN02476 O-methyltransferase 97.7 4.8E-05 1E-09 74.8 6.1 79 289-369 118-203 (278)
188 TIGR00308 TRM1 tRNA(guanine-26 97.7 7.2E-05 1.6E-09 77.0 7.5 75 291-368 46-122 (374)
189 KOG1633|consensus 97.7 0.00011 2.4E-09 81.2 9.0 128 66-195 8-150 (776)
190 COG4122 Predicted O-methyltran 97.7 0.00012 2.7E-09 69.3 7.9 91 289-381 59-154 (219)
191 KOG2940|consensus 97.7 4.3E-05 9.3E-10 71.3 4.4 94 290-389 73-168 (325)
192 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00015 3.2E-09 71.4 8.4 94 272-371 12-108 (262)
193 PF08704 GCD14: tRNA methyltra 97.6 0.00019 4.1E-09 69.6 8.3 87 281-369 31-122 (247)
194 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00015 3.3E-09 81.0 8.8 83 289-373 190-316 (702)
195 PF02527 GidB: rRNA small subu 97.6 0.00014 3.1E-09 67.3 6.8 75 290-369 49-124 (184)
196 KOG3201|consensus 97.6 1.8E-05 3.9E-10 70.0 0.6 126 265-390 4-135 (201)
197 PF05891 Methyltransf_PK: AdoM 97.6 0.00016 3.5E-09 67.9 6.7 90 289-382 55-146 (218)
198 KOG2361|consensus 97.5 9.9E-05 2.2E-09 69.7 4.9 109 277-389 56-177 (264)
199 PF00891 Methyltransf_2: O-met 97.5 0.00035 7.5E-09 67.7 8.9 85 280-378 90-176 (241)
200 COG2520 Predicted methyltransf 97.5 0.00016 3.5E-09 72.9 6.4 90 289-381 188-277 (341)
201 COG0357 GidB Predicted S-adeno 97.5 0.00012 2.5E-09 69.2 4.9 76 290-369 68-144 (215)
202 COG2519 GCD14 tRNA(1-methylade 97.5 0.00031 6.7E-09 67.3 7.6 85 281-369 85-172 (256)
203 COG4076 Predicted RNA methylas 97.5 0.00011 2.3E-09 66.7 4.1 73 288-367 31-103 (252)
204 PRK10742 putative methyltransf 97.5 0.0002 4.4E-09 68.8 6.0 81 292-373 91-177 (250)
205 COG0220 Predicted S-adenosylme 97.4 0.00018 3.9E-09 68.8 5.4 80 291-373 50-132 (227)
206 PLN02823 spermine synthase 97.4 0.00053 1.2E-08 69.6 8.3 79 289-367 103-183 (336)
207 COG0116 Predicted N6-adenine-s 97.4 0.00071 1.5E-08 68.8 8.8 93 277-372 178-311 (381)
208 PF13679 Methyltransf_32: Meth 97.4 0.00028 6E-09 62.6 5.2 80 288-369 24-108 (141)
209 COG1041 Predicted DNA modifica 97.3 0.0005 1.1E-08 69.0 7.3 91 277-372 184-276 (347)
210 PLN02589 caffeoyl-CoA O-methyl 97.3 0.00029 6.4E-09 68.4 5.4 78 289-368 79-164 (247)
211 PF06080 DUF938: Protein of un 97.3 0.00063 1.4E-08 63.6 7.2 109 278-389 14-135 (204)
212 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00032 6.9E-09 70.7 5.6 96 277-373 33-138 (311)
213 COG2521 Predicted archaeal met 97.3 0.00023 5.1E-09 66.8 4.0 101 289-390 134-240 (287)
214 TIGR01444 fkbM_fam methyltrans 97.3 0.00045 9.7E-09 61.0 5.3 58 292-352 1-59 (143)
215 KOG1661|consensus 97.2 0.0012 2.7E-08 61.2 8.1 121 265-390 55-188 (237)
216 PF05219 DREV: DREV methyltran 97.2 0.0011 2.5E-08 63.8 8.1 86 289-389 94-182 (265)
217 PRK11760 putative 23S rRNA C24 97.2 0.0019 4.1E-08 64.9 9.4 89 273-373 187-283 (357)
218 KOG2899|consensus 97.2 0.00097 2.1E-08 63.1 6.6 45 288-332 57-102 (288)
219 PF05971 Methyltransf_10: Prot 97.1 0.0013 2.7E-08 65.3 7.5 85 290-375 103-192 (299)
220 TIGR02987 met_A_Alw26 type II 97.1 0.00081 1.8E-08 72.9 6.1 82 289-373 31-125 (524)
221 PRK10611 chemotaxis methyltran 97.0 0.00096 2.1E-08 66.2 5.8 99 291-389 117-256 (287)
222 PF08123 DOT1: Histone methyla 97.0 0.00088 1.9E-08 63.2 4.8 100 280-379 32-141 (205)
223 COG0421 SpeE Spermidine syntha 97.0 0.0024 5.2E-08 63.1 7.8 80 289-368 76-157 (282)
224 COG1189 Predicted rRNA methyla 96.9 0.0023 4.9E-08 60.8 6.8 95 272-374 61-158 (245)
225 KOG2793|consensus 96.9 0.0031 6.7E-08 60.9 7.4 115 268-382 53-184 (248)
226 PRK01544 bifunctional N5-gluta 96.7 0.0019 4.1E-08 69.5 5.4 82 289-373 347-430 (506)
227 KOG1709|consensus 96.7 0.0054 1.2E-07 57.2 7.4 110 272-389 86-200 (271)
228 PF01564 Spermine_synth: Sperm 96.5 0.0041 9E-08 60.5 5.9 82 288-369 75-159 (246)
229 PRK11933 yebU rRNA (cytosine-C 96.5 0.012 2.6E-07 62.5 9.5 126 288-419 112-263 (470)
230 PF03141 Methyltransf_29: Puta 96.5 0.0022 4.7E-08 67.1 3.8 104 275-389 98-213 (506)
231 smart00558 JmjC A domain famil 96.5 0.002 4.4E-08 47.5 2.6 43 149-193 5-48 (57)
232 KOG2730|consensus 96.5 0.0029 6.4E-08 59.1 4.1 95 272-369 75-174 (263)
233 PF09243 Rsm22: Mitochondrial 96.5 0.0046 1E-07 61.2 5.7 97 275-375 18-117 (274)
234 cd00315 Cyt_C5_DNA_methylase C 96.3 0.0074 1.6E-07 59.8 6.4 75 292-375 2-77 (275)
235 PF01739 CheR: CheR methyltran 96.3 0.0089 1.9E-07 56.0 6.6 99 290-389 32-169 (196)
236 PF08007 Cupin_4: Cupin superf 96.2 0.003 6.5E-08 64.0 3.1 40 431-470 175-214 (319)
237 PF04816 DUF633: Family of unk 96.2 0.0092 2E-07 56.3 5.9 77 293-372 1-78 (205)
238 PHA01634 hypothetical protein 96.2 0.0069 1.5E-07 51.7 4.2 46 286-331 25-70 (156)
239 COG0500 SmtA SAM-dependent met 96.1 0.029 6.3E-07 48.3 8.5 84 293-381 52-139 (257)
240 KOG2915|consensus 96.1 0.02 4.4E-07 55.3 7.7 83 288-372 104-189 (314)
241 COG1352 CheR Methylase of chem 96.0 0.02 4.3E-07 56.2 7.5 99 290-389 97-235 (268)
242 COG0293 FtsJ 23S rRNA methylas 96.0 0.024 5.2E-07 53.1 7.6 87 268-369 24-120 (205)
243 KOG1331|consensus 96.0 0.0042 9E-08 60.5 2.5 117 266-402 27-148 (293)
244 PF04445 SAM_MT: Putative SAM- 95.9 0.011 2.4E-07 56.6 5.0 82 291-373 77-164 (234)
245 KOG1269|consensus 95.9 0.0076 1.6E-07 61.8 4.1 98 289-389 110-209 (364)
246 PF01269 Fibrillarin: Fibrilla 95.7 0.092 2E-06 49.7 10.1 93 268-369 47-152 (229)
247 PF05148 Methyltransf_8: Hypot 95.7 0.034 7.4E-07 52.0 7.0 105 272-404 55-163 (219)
248 PF01861 DUF43: Protein of unk 95.6 0.044 9.6E-07 52.4 7.8 111 265-381 20-132 (243)
249 KOG3045|consensus 95.6 0.04 8.6E-07 52.9 7.2 96 278-403 171-268 (325)
250 PF01728 FtsJ: FtsJ-like methy 95.5 0.017 3.8E-07 53.2 4.7 51 273-323 4-59 (181)
251 PF12147 Methyltransf_20: Puta 95.4 0.053 1.1E-06 53.2 7.6 88 290-380 136-229 (311)
252 COG4262 Predicted spermidine s 95.2 0.044 9.6E-07 55.0 6.6 89 290-378 290-383 (508)
253 TIGR00006 S-adenosyl-methyltra 95.2 0.055 1.2E-06 54.1 7.1 99 277-379 7-113 (305)
254 PF01555 N6_N4_Mtase: DNA meth 94.8 0.038 8.2E-07 52.3 4.8 56 273-329 175-230 (231)
255 COG2384 Predicted SAM-dependen 94.8 0.095 2.1E-06 49.4 7.1 80 289-371 16-96 (226)
256 KOG1501|consensus 94.6 0.034 7.4E-07 57.0 3.9 56 292-349 69-124 (636)
257 PRK11524 putative methyltransf 94.5 0.061 1.3E-06 53.5 5.6 58 274-332 193-250 (284)
258 KOG4058|consensus 94.5 0.049 1.1E-06 47.9 4.1 66 288-355 71-136 (199)
259 PRK00536 speE spermidine synth 94.5 0.16 3.5E-06 49.8 8.2 77 287-368 70-147 (262)
260 PF11968 DUF3321: Putative met 94.3 0.081 1.8E-06 49.8 5.5 87 272-378 29-122 (219)
261 KOG3987|consensus 94.1 0.0083 1.8E-07 55.5 -1.5 88 288-390 111-201 (288)
262 PF07942 N2227: N2227-like pro 94.1 0.19 4.1E-06 49.4 7.8 111 278-389 40-196 (270)
263 PF07757 AdoMet_MTase: Predict 93.9 0.081 1.7E-06 44.1 4.0 30 289-319 58-87 (112)
264 PF07091 FmrO: Ribosomal RNA m 93.8 0.15 3.3E-06 49.1 6.4 81 290-376 106-187 (251)
265 KOG4589|consensus 93.5 0.37 7.9E-06 44.3 7.9 82 273-368 52-144 (232)
266 PRK13699 putative methylase; P 93.5 0.14 3E-06 49.2 5.7 58 274-332 148-205 (227)
267 TIGR00675 dcm DNA-methyltransf 93.4 0.12 2.5E-06 52.4 5.2 73 293-374 1-73 (315)
268 TIGR03439 methyl_EasF probable 93.2 0.17 3.6E-06 51.2 6.0 86 289-377 76-174 (319)
269 PF00145 DNA_methylase: C-5 cy 93.0 0.083 1.8E-06 53.2 3.5 74 292-375 2-76 (335)
270 KOG2078|consensus 93.0 0.13 2.7E-06 52.9 4.6 82 271-354 231-312 (495)
271 KOG1227|consensus 92.9 0.041 8.9E-07 53.9 1.1 96 289-390 194-290 (351)
272 KOG2671|consensus 92.9 0.1 2.3E-06 52.1 3.8 86 289-375 208-299 (421)
273 KOG1663|consensus 92.7 0.25 5.5E-06 46.9 5.9 77 288-366 72-155 (237)
274 KOG2352|consensus 92.5 0.36 7.8E-06 50.7 7.3 92 277-373 36-127 (482)
275 KOG3178|consensus 92.1 0.31 6.8E-06 49.1 6.1 88 291-390 179-269 (342)
276 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.0 0.19 4.2E-06 49.9 4.5 127 287-419 83-240 (283)
277 COG0270 Dcm Site-specific DNA 91.6 0.35 7.6E-06 49.2 6.0 77 291-375 4-82 (328)
278 KOG3115|consensus 91.2 0.15 3.3E-06 47.3 2.6 62 291-352 62-128 (249)
279 COG1889 NOP1 Fibrillarin-like 91.2 0.78 1.7E-05 42.8 7.2 95 268-367 50-152 (231)
280 COG0286 HsdM Type I restrictio 90.7 0.48 1.1E-05 50.9 6.3 93 277-371 173-275 (489)
281 COG3129 Predicted SAM-dependen 90.1 0.59 1.3E-05 44.4 5.4 100 275-375 61-168 (292)
282 COG0144 Sun tRNA and rRNA cyto 90.1 0.99 2.1E-05 46.4 7.7 127 288-420 155-310 (355)
283 PF01795 Methyltransf_5: MraW 89.8 0.81 1.8E-05 45.8 6.6 90 287-380 18-115 (310)
284 COG1867 TRM1 N2,N2-dimethylgua 88.9 0.63 1.4E-05 47.3 5.0 89 290-381 53-142 (380)
285 PF13578 Methyltransf_24: Meth 88.8 0.2 4.3E-06 41.6 1.2 70 294-369 1-78 (106)
286 PF04672 Methyltransf_19: S-ad 88.5 0.49 1.1E-05 46.3 3.9 104 291-402 70-193 (267)
287 KOG2651|consensus 88.5 0.73 1.6E-05 46.8 5.1 53 278-330 141-194 (476)
288 PRK10458 DNA cytosine methylas 88.4 1.1 2.4E-05 47.7 6.7 80 290-374 88-183 (467)
289 COG0275 Predicted S-adenosylme 88.1 1.5 3.3E-05 43.4 6.9 89 277-369 10-105 (314)
290 COG1568 Predicted methyltransf 88.0 0.38 8.1E-06 46.8 2.6 102 264-369 127-230 (354)
291 PF11599 AviRa: RRNA methyltra 87.7 0.59 1.3E-05 43.9 3.6 89 290-378 52-186 (246)
292 PF02005 TRM: N2,N2-dimethylgu 87.5 0.88 1.9E-05 47.1 5.2 91 290-381 50-142 (377)
293 PF03059 NAS: Nicotianamine sy 86.9 1.5 3.2E-05 43.3 6.1 91 290-382 121-215 (276)
294 PF02636 Methyltransf_28: Puta 86.2 1.9 4.2E-05 41.9 6.6 90 278-373 6-108 (252)
295 COG1565 Uncharacterized conser 86.1 1.9 4.1E-05 43.9 6.5 53 278-330 66-127 (370)
296 KOG1596|consensus 85.7 3.5 7.5E-05 39.6 7.6 95 266-369 128-235 (317)
297 PF06560 GPI: Glucose-6-phosph 84.3 0.64 1.4E-05 42.9 2.1 38 431-468 109-146 (182)
298 PF11899 DUF3419: Protein of u 84.0 2.1 4.4E-05 44.4 5.9 57 272-332 21-77 (380)
299 KOG1122|consensus 82.1 4.5 9.7E-05 41.9 7.2 129 287-421 239-394 (460)
300 KOG0024|consensus 75.4 3.9 8.4E-05 41.0 4.4 43 289-331 169-213 (354)
301 PF05206 TRM13: Methyltransfer 75.0 5.8 0.00013 38.9 5.5 44 278-321 6-56 (259)
302 COG2140 Thermophilic glucose-6 74.2 1.6 3.4E-05 40.9 1.3 34 430-463 124-157 (209)
303 PF02086 MethyltransfD12: D12 73.9 3.7 8.1E-05 39.8 3.9 53 276-329 6-59 (260)
304 PF03492 Methyltransf_7: SAM d 73.4 7 0.00015 39.8 5.9 86 290-376 17-123 (334)
305 PF01234 NNMT_PNMT_TEMT: NNMT/ 73.2 2.4 5.2E-05 41.4 2.3 104 287-390 54-194 (256)
306 KOG1098|consensus 72.0 3.7 8E-05 44.4 3.5 56 266-322 21-79 (780)
307 PF06962 rRNA_methylase: Putat 71.2 5.9 0.00013 34.9 4.1 54 314-369 1-55 (140)
308 KOG3706|consensus 70.9 5.7 0.00012 41.6 4.4 43 430-472 379-427 (629)
309 COG5379 BtaA S-adenosylmethion 70.8 4.8 0.0001 39.7 3.7 57 271-331 48-104 (414)
310 PF00190 Cupin_1: Cupin; Inte 69.6 5.4 0.00012 35.1 3.6 29 435-463 87-117 (144)
311 KOG2912|consensus 69.2 14 0.00029 37.1 6.4 79 293-373 106-191 (419)
312 PF05523 FdtA: WxcM-like, C-te 68.3 3.4 7.5E-05 36.0 2.0 31 438-469 83-113 (131)
313 PF03686 UPF0146: Uncharacteri 68.2 17 0.00036 31.5 6.0 87 278-381 4-92 (127)
314 PRK04190 glucose-6-phosphate i 67.6 4.1 8.8E-05 38.0 2.4 28 431-458 119-146 (191)
315 COG0863 DNA modification methy 65.7 13 0.00027 36.9 5.8 58 275-333 208-265 (302)
316 COG1064 AdhP Zn-dependent alco 65.0 15 0.00032 37.5 6.0 73 288-369 165-238 (339)
317 PF07883 Cupin_2: Cupin domain 61.9 6.5 0.00014 29.5 2.3 26 433-458 38-63 (71)
318 COG1063 Tdh Threonine dehydrog 61.7 12 0.00025 38.4 4.7 42 289-330 168-211 (350)
319 KOG0822|consensus 61.1 16 0.00035 39.1 5.5 87 277-367 351-446 (649)
320 PLN02668 indole-3-acetate carb 59.5 6.1 0.00013 41.0 2.2 19 358-376 160-178 (386)
321 PF02373 JmjC: JmjC domain, hy 58.7 2.7 6E-05 35.0 -0.4 22 174-195 1-22 (114)
322 PF04989 CmcI: Cephalosporin h 55.8 24 0.00052 33.3 5.3 62 288-353 31-97 (206)
323 TIGR00497 hsdM type I restrict 55.7 26 0.00055 37.9 6.3 83 289-372 217-305 (501)
324 COG0662 {ManC} Mannose-6-phosp 55.4 7.8 0.00017 33.4 1.9 25 433-457 76-100 (127)
325 PF05050 Methyltransf_21: Meth 54.1 15 0.00033 32.3 3.7 37 295-331 1-42 (167)
326 cd08283 FDH_like_1 Glutathione 53.8 17 0.00037 37.5 4.5 43 289-331 184-228 (386)
327 KOG2798|consensus 52.5 27 0.00059 35.0 5.2 35 290-325 151-185 (369)
328 COG1255 Uncharacterized protei 52.3 34 0.00073 29.1 5.0 63 290-367 14-77 (129)
329 COG1748 LYS9 Saccharopine dehy 52.0 36 0.00077 35.4 6.3 83 291-380 2-89 (389)
330 KOG0821|consensus 51.3 24 0.00052 33.5 4.4 74 275-352 35-109 (326)
331 KOG0022|consensus 50.0 26 0.00057 35.2 4.7 44 289-332 192-237 (375)
332 PRK09424 pntA NAD(P) transhydr 49.2 24 0.00052 38.1 4.7 44 288-331 163-207 (509)
333 COG5459 Predicted rRNA methyla 48.8 8.9 0.00019 38.9 1.3 102 274-378 97-203 (484)
334 PF12692 Methyltransf_17: S-ad 47.6 71 0.0015 28.5 6.5 44 277-320 16-60 (160)
335 KOG3924|consensus 44.4 17 0.00037 37.5 2.6 97 278-374 181-286 (419)
336 COG4101 Predicted mannose-6-ph 43.0 15 0.00032 31.2 1.5 24 433-456 89-112 (142)
337 PF02254 TrkA_N: TrkA-N domain 42.8 47 0.001 27.4 4.8 60 298-367 4-69 (116)
338 cd08237 ribitol-5-phosphate_DH 42.4 35 0.00075 34.6 4.6 43 288-330 162-207 (341)
339 PTZ00357 methyltransferase; Pr 42.4 37 0.0008 37.7 4.8 76 292-367 703-799 (1072)
340 PF03141 Methyltransf_29: Puta 42.3 15 0.00031 39.2 1.8 89 291-390 367-462 (506)
341 TIGR01221 rmlC dTDP-4-dehydror 42.0 31 0.00067 31.7 3.7 23 436-458 102-124 (176)
342 COG1062 AdhC Zn-dependent alco 41.7 43 0.00094 34.1 4.9 45 288-332 184-230 (366)
343 KOG2497|consensus 41.6 15 0.00033 36.0 1.6 47 265-311 65-112 (262)
344 cd01492 Aos1_SUMO Ubiquitin ac 41.1 43 0.00094 31.2 4.6 35 288-322 19-55 (197)
345 TIGR03404 bicupin_oxalic bicup 39.8 23 0.00049 36.6 2.7 24 434-457 291-314 (367)
346 PRK13290 ectC L-ectoine syntha 39.8 29 0.00064 29.9 3.0 28 433-460 76-103 (125)
347 TIGR00853 pts-lac PTS system, 39.7 52 0.0011 26.8 4.4 67 291-380 4-71 (95)
348 PF01488 Shikimate_DH: Shikima 39.2 61 0.0013 28.0 5.0 85 287-380 9-95 (135)
349 cd00401 AdoHcyase S-adenosyl-L 38.8 28 0.0006 36.6 3.2 44 287-330 199-243 (413)
350 PRK12475 thiamine/molybdopteri 37.0 49 0.0011 33.8 4.6 35 288-322 22-58 (338)
351 PF07101 DUF1363: Protein of u 36.7 13 0.00029 30.1 0.4 17 293-309 6-22 (124)
352 cd01080 NAD_bind_m-THF_DH_Cycl 36.5 1.4E+02 0.0029 27.2 7.0 46 275-321 28-77 (168)
353 PRK09943 DNA-binding transcrip 35.9 29 0.00063 31.9 2.6 35 433-467 147-181 (185)
354 KOG2539|consensus 35.8 25 0.00054 37.1 2.3 87 288-377 199-291 (491)
355 COG3392 Adenine-specific DNA m 35.5 26 0.00056 34.2 2.1 45 275-320 7-57 (330)
356 cd01488 Uba3_RUB Ubiquitin act 35.0 56 0.0012 32.6 4.5 74 292-367 1-95 (291)
357 smart00835 Cupin_1 Cupin. This 33.0 37 0.0008 29.8 2.7 25 432-456 75-99 (146)
358 PF03269 DUF268: Caenorhabditi 32.6 33 0.00071 31.1 2.2 99 290-402 2-114 (177)
359 PRK09880 L-idonate 5-dehydroge 32.3 93 0.002 31.3 5.8 44 288-331 168-213 (343)
360 PRK01747 mnmC bifunctional tRN 30.9 71 0.0015 35.7 5.1 77 291-367 59-173 (662)
361 PF01050 MannoseP_isomer: Mann 30.7 36 0.00077 30.5 2.1 23 434-456 104-126 (151)
362 COG1917 Uncharacterized conser 30.6 40 0.00087 28.9 2.4 26 433-458 83-108 (131)
363 KOG2198|consensus 30.6 93 0.002 32.0 5.2 80 289-371 155-247 (375)
364 cd01075 NAD_bind_Leu_Phe_Val_D 30.5 77 0.0017 29.6 4.5 43 285-329 23-68 (200)
365 cd05188 MDR Medium chain reduc 30.4 79 0.0017 29.9 4.7 43 288-330 133-176 (271)
366 PF10237 N6-adenineMlase: Prob 30.4 2.1E+02 0.0045 25.9 7.0 88 275-376 12-102 (162)
367 cd08254 hydroxyacyl_CoA_DH 6-h 30.0 72 0.0016 31.6 4.5 42 289-330 165-207 (338)
368 COG4301 Uncharacterized conser 29.8 92 0.002 30.3 4.8 41 289-329 78-123 (321)
369 KOG2015|consensus 29.7 80 0.0017 31.9 4.5 102 275-382 31-152 (422)
370 KOG4415|consensus 29.6 25 0.00054 32.3 1.0 23 168-190 38-60 (247)
371 PF14824 Sirohm_synth_M: Siroh 29.4 21 0.00045 22.6 0.3 21 1-21 8-28 (30)
372 PF15138 Syncollin: Syncollin 28.9 43 0.00093 27.7 2.1 36 429-464 32-70 (112)
373 COG3510 CmcI Cephalosporin hyd 28.8 91 0.002 29.2 4.4 87 287-381 67-164 (237)
374 TIGR01381 E1_like_apg7 E1-like 28.1 58 0.0012 36.2 3.5 33 288-320 336-370 (664)
375 COG0771 MurD UDP-N-acetylmuram 27.5 2.7E+02 0.0058 29.7 8.3 169 289-466 6-188 (448)
376 PRK07424 bifunctional sterol d 26.5 1.8E+02 0.0039 30.5 6.8 74 288-369 176-254 (406)
377 PRK03369 murD UDP-N-acetylmura 26.1 1.2E+02 0.0027 32.5 5.7 71 289-372 11-82 (488)
378 KOG1253|consensus 26.0 28 0.0006 37.0 0.7 91 289-381 109-204 (525)
379 TIGR03201 dearomat_had 6-hydro 25.7 96 0.0021 31.3 4.6 43 288-330 165-208 (349)
380 PRK06153 hypothetical protein; 25.2 74 0.0016 33.1 3.5 34 288-321 174-209 (393)
381 TIGR03366 HpnZ_proposed putati 25.1 1.4E+02 0.0031 28.9 5.6 44 288-331 119-164 (280)
382 TIGR03404 bicupin_oxalic bicup 24.4 80 0.0017 32.6 3.7 24 435-458 113-136 (367)
383 PLN02740 Alcohol dehydrogenase 24.0 1E+02 0.0022 31.7 4.4 43 288-330 197-241 (381)
384 PRK09590 celB cellobiose phosp 23.8 1.2E+02 0.0026 25.2 4.0 67 292-380 3-71 (104)
385 TIGR02354 thiF_fam2 thiamine b 23.5 88 0.0019 29.2 3.5 34 288-321 19-54 (200)
386 PF05899 Cupin_3: Protein of u 23.5 34 0.00074 26.4 0.6 15 434-448 46-60 (74)
387 KOG1099|consensus 23.1 63 0.0014 31.1 2.4 83 273-369 24-124 (294)
388 TIGR02356 adenyl_thiF thiazole 22.8 95 0.0021 29.0 3.6 34 288-321 19-54 (202)
389 PF00107 ADH_zinc_N: Zinc-bind 22.8 64 0.0014 27.1 2.3 33 299-331 1-33 (130)
390 PRK08223 hypothetical protein; 22.4 90 0.0019 31.1 3.4 35 288-322 25-61 (287)
391 PLN02827 Alcohol dehydrogenase 22.2 1.3E+02 0.0028 31.0 4.7 43 288-330 192-236 (378)
392 TIGR00571 dam DNA adenine meth 21.9 1.3E+02 0.0028 29.5 4.5 54 272-328 7-61 (266)
393 TIGR03037 anthran_nbaC 3-hydro 21.8 68 0.0015 28.9 2.2 32 432-463 70-101 (159)
394 TIGR00518 alaDH alanine dehydr 21.1 1.3E+02 0.0029 31.0 4.6 42 288-329 165-207 (370)
395 cd01484 E1-2_like Ubiquitin ac 21.0 1.4E+02 0.0029 28.8 4.3 31 292-322 1-33 (234)
396 cd08238 sorbose_phosphate_red 20.8 1.4E+02 0.0029 31.2 4.7 42 289-330 175-221 (410)
397 PRK08328 hypothetical protein; 20.8 1E+02 0.0022 29.5 3.4 34 288-321 25-60 (231)
398 TIGR02466 conserved hypothetic 20.7 74 0.0016 29.9 2.4 32 435-466 165-199 (201)
399 TIGR02818 adh_III_F_hyde S-(hy 20.7 1.3E+02 0.0029 30.6 4.5 43 288-330 184-228 (368)
400 KOG1562|consensus 20.4 67 0.0015 32.1 2.0 82 285-366 117-201 (337)
401 TIGR02822 adh_fam_2 zinc-bindi 20.2 1.4E+02 0.0031 29.9 4.6 44 288-331 164-208 (329)
402 PF07279 DUF1442: Protein of u 20.2 3.1E+02 0.0068 26.1 6.3 106 278-389 29-142 (218)
403 TIGR01202 bchC 2-desacetyl-2-h 20.2 1.4E+02 0.003 29.6 4.4 42 289-330 144-187 (308)
404 cd05564 PTS_IIB_chitobiose_lic 20.0 1.2E+02 0.0027 24.5 3.3 61 296-378 4-65 (96)
No 1
>KOG2130|consensus
Probab=100.00 E-value=1.3e-79 Score=577.92 Aligned_cols=311 Identities=56% Similarity=1.011 Sum_probs=294.4
Q ss_pred ccccchHHHHhhHHhhhcCCCCCCCcccccccCcccccccc-ccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCC
Q psy11730 8 SKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKF-KIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTE 86 (496)
Q Consensus 8 ~~~~~~~~~~~~~~~k~~~r~~~~~~~~w~~~~~~~~~~~~-~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~ 86 (496)
...+++++.+|++++|+++||+|....+|...+|++.|.+. +...++++|+++.++|.+||+++|.+|++||||+|+++
T Consensus 6 y~~~n~~~~kr~~~~kr~arpel~~~~~w~~~~y~e~f~~~~~~~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~D 85 (407)
T KOG2130|consen 6 YILCNHEPLKRSLELKRKARPELYKMSDWLYKRYYESFTLLDPFFFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTD 85 (407)
T ss_pred eeecCcchHHHHHHHHHhcChhhhhhhhHHHHHHHHhccccCccccccchhhhhcCCCHHHHHHHhcccCCceEeecccc
Confidence 45688999999999999999999999999999999999764 45889999999999999999999999999999999999
Q ss_pred CCcCCCCCCHHHHHhhcCCeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCcc-----ccc--cccccCCCCCCCc
Q psy11730 87 NWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHP-----RRK--KLLDDYEVPIYFQ 157 (496)
Q Consensus 87 ~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~-----~~~--~L~~d~~~P~~f~ 157 (496)
+|||.+|||.++|.++|||++|+|+++++|++ +|+|++|++||+++.|+ |+|+++ +.| .|.+||.||+||+
T Consensus 86 gW~A~ekWT~drLskkyrnq~Fkcged~~gnsv~MKmkyY~~Ym~~~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~ 165 (407)
T KOG2130|consen 86 GWPASEKWTLDRLSKKYRNQKFKCGEDNNGNSVKMKMKYYIEYMKSTRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFR 165 (407)
T ss_pred CCchhhhhhHHHHHHHhcCccccccccCCCcceeeeHHHHHHHHhccccCCCeEEecchhhcccchhhhhhhcCcchhhh
Confidence 99999999999999999999999999999999 99999999999999998 988865 234 8999999999999
Q ss_pred hhhhcccCCCCCCCccceEecCCCCccccccCCCCCCCcccccCCCCCccccCCCCChhHHHHHHHHHhccccccccccc
Q psy11730 158 DDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVS 237 (496)
Q Consensus 158 ~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (496)
+|+|+++++++|||||||+|||++|||.+|+||.+++|||+-|+|.
T Consensus 166 dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~Gh---------------------------------- 211 (407)
T KOG2130|consen 166 DDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQGH---------------------------------- 211 (407)
T ss_pred HHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhhcc----------------------------------
Confidence 9999999999999999999999999999999999999944444432
Q ss_pred cchhcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEE
Q psy11730 238 NIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSF 317 (496)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~g 317 (496)
T Consensus 212 -------------------------------------------------------------------------------- 211 (407)
T KOG2130|consen 212 -------------------------------------------------------------------------------- 211 (407)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCCCcccEEE
Q psy11730 318 QDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKV 397 (496)
Q Consensus 318 iD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~ 397 (496)
+.|+|||++.+..++.+
T Consensus 212 ---------------------------------------------------------------KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 212 ---------------------------------------------------------------KRWVLFPPGTPPELVKV 228 (407)
T ss_pred ---------------------------------------------------------------ceeEEcCCCCCCCceee
Confidence 78999999999999999
Q ss_pred eeccCCcccccccchhhHhcCCCCCCCCCCCCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHH
Q psy11730 398 TSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHK 477 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~ 477 (496)
....++....+.+.||..+|+.+++|.||.+.+|+||+|+|||++|+|+||||.|+|+++|||||||||+.+||+-||||
T Consensus 229 ~~~e~g~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~k 308 (407)
T KOG2130|consen 229 TVDEGGKQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWHK 308 (407)
T ss_pred cccccCCCCcceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceeeec
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHHHHhc
Q psy11730 478 TIRGRPKLSKKWYRKLKT 495 (496)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~ 495 (496)
|++||||+|++|++.|+.
T Consensus 309 tv~Grpkls~~w~~~L~~ 326 (407)
T KOG2130|consen 309 TVRGRPKLSRKWARLLAL 326 (407)
T ss_pred ccCCCcchhhHHHHHHhh
Confidence 999999999999999975
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.94 E-value=3.9e-28 Score=236.51 Aligned_cols=124 Identities=33% Similarity=0.593 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCcCCCCCC-----HHHHHhhcCCeeEEeeecCC------C---------c--cccCH
Q psy11730 65 PQEFIEKYEKPNKPVVIKGVTENWNATYKWT-----LEKLGKKYRNQKFKCGEDNH------G---------Y--SKLGK 122 (496)
Q Consensus 65 ~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt-----~~~L~~~~g~~~v~v~~~~~------~---------~--~~m~~ 122 (496)
|+||.++|+.+++||||+|++.+|||+++|+ .+||.+++|+..|.+..... + . ..|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 6899999999999999999999999999999 59999999999999974321 1 1 29999
Q ss_pred HHHHHHhhcCCCC----CCCC-----ccccccccccCCCCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCC
Q psy11730 123 KYRNQKFKCGEDN----HGYS-----HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGT 193 (496)
Q Consensus 123 ~~f~~~~~~~~~~----p~y~-----~~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~ 193 (496)
++|++.+....+. ++|+ ....+.|.++..+| +..+++. ..+...++|||++||+|++|+|+..+
T Consensus 81 ~~f~~~~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~l~ig~~gs~t~lH~D~~~n 153 (251)
T PF13621_consen 81 RDFLDRLRANRDQRDKPYYYLQNWNLFEDFPELREDNDLP--FPPELFG-----KEPQSSNLWIGPPGSFTPLHYDPSHN 153 (251)
T ss_dssp HHHHHHHHHSCHSTSSSEEEEEEETHHHHSHHHHCCS-CH--HHHCHSC-----CHCCEEEEEEE-TTEEEEEEE-SSEE
T ss_pred HHHHHHHHhcccccCCceEEEecCchHHHhhhhhhccccc--cchhhcc-----cCccccEEEEeCCCceeeeeECchhh
Confidence 9999998887632 2443 24568888885555 3344441 12445678999999999999999654
Q ss_pred CC
Q psy11730 194 NP 195 (496)
Q Consensus 194 ~~ 195 (496)
.+
T Consensus 154 ~~ 155 (251)
T PF13621_consen 154 LL 155 (251)
T ss_dssp EE
T ss_pred hh
Confidence 44
No 3
>KOG2131|consensus
Probab=99.90 E-value=2.7e-24 Score=207.90 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=99.8
Q ss_pred CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCC----CCCCH------------HHHHhhcCCeeEEeeecC
Q psy11730 51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNAT----YKWTL------------EKLGKKYRNQKFKCGEDN 114 (496)
Q Consensus 51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~----~~Wt~------------~~L~~~~g~~~v~v~~~~ 114 (496)
.+..|+|+-.+.+++..|.+.|..++.||+|.++..+|+|. ..|.. .|.+.+.-+..++|..++
T Consensus 26 lr~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~ 105 (427)
T KOG2131|consen 26 LRPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCD 105 (427)
T ss_pred hhhhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCccccccc
Confidence 56689998788899999999999999999999999999998 44521 122222222222222222
Q ss_pred CCc----c--ccCHHHHHHHhhcCCC------------------------C-CCCCccc--cccc--cccCCCCCCCchh
Q psy11730 115 HGY----S--KLGKKYRNQKFKCGED------------------------N-HGYSHPR--RKKL--LDDYEVPIYFQDD 159 (496)
Q Consensus 115 ~~~----~--~m~~~~f~~~~~~~~~------------------------~-p~y~~~~--~~~L--~~d~~~P~~f~~d 159 (496)
..+ . .+++.+|+.-+.+... . ++|..+. ...+ ..-|..|++|+.|
T Consensus 106 ~s~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwHL~~~~d~~~~~~~pd~F~~d 185 (427)
T KOG2131|consen 106 LSLFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWHLYRFLDNDFPYWTPDLFAKD 185 (427)
T ss_pred cccCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchheeeecCcccccccchhhhhc
Confidence 111 1 4444444433222111 1 1232211 1111 2235689999887
Q ss_pred -hhcccCCCCCCCccceEecCCCCccccccCCCCCCCcccccCCC
Q psy11730 160 -LFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDD 203 (496)
Q Consensus 160 -~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~ 203 (496)
+.+++.....++||+++|||+||+||+|.|.+++..|.++|+|+
T Consensus 186 wlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~ 230 (427)
T KOG2131|consen 186 WLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGR 230 (427)
T ss_pred ccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecc
Confidence 55666555678999999999999999999999999988888866
No 4
>KOG2508|consensus
Probab=99.73 E-value=1.2e-17 Score=161.48 Aligned_cols=147 Identities=21% Similarity=0.268 Sum_probs=106.3
Q ss_pred CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCH-HHHHhhcCCeeEEeeecCCCcc-----------
Q psy11730 51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTL-EKLGKKYRNQKFKCGEDNHGYS----------- 118 (496)
Q Consensus 51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~-~~L~~~~g~~~v~v~~~~~~~~----------- 118 (496)
..-.|.+.| ..+||-+|+++|+.+|+||||+.+..+|||.++|+. +||.+..||..|.|.-+..||.
T Consensus 20 vp~~v~~lD-~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd~vvsvaitPngyadgav~~g~e~f 98 (437)
T KOG2508|consen 20 VPVLVNLLD-LTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGDIVVSVAITPNGYADGAVMSGNEMF 98 (437)
T ss_pred ccccccccc-CCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccCeEEEEEeCCCCccccccccCccee
Confidence 455677876 568999999999999999999999999999999997 5999999999999986555432
Q ss_pred ------ccCHHHHHHHhhcCCCCC--CCCccc-------cccccccCCCCCC-CchhhhcccCCCCCCCccceEecCCCC
Q psy11730 119 ------KLGKKYRNQKFKCGEDNH--GYSHPR-------RKKLLDDYEVPIY-FQDDLFQYAGEDKRPPYRWFVMGPARS 182 (496)
Q Consensus 119 ------~m~~~~f~~~~~~~~~~p--~y~~~~-------~~~L~~d~~~P~~-f~~d~~~~~~~~~~p~~~w~~iG~~gs 182 (496)
+|++.+-+..+.+....+ .|..++ .|.+..|...-++ +....| ...|+...||||-+.+
T Consensus 99 ~~pae~KlklsevL~vl~~~~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa~eaf-----gk~PdavNlWiG~~~a 173 (437)
T KOG2508|consen 99 IKPAEQKLKLSEVLYVLTQYDESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWAPEAF-----GKVPDAVNLWIGKSEA 173 (437)
T ss_pred echhhhhccchhhheehhcccCCCceeehhhhcccccccccccccccccccccccHHHh-----CCChhheeeeeccccc
Confidence 455555555444433322 444333 3444444444222 233333 2457778899999999
Q ss_pred ccccccCCCCCCCcccccCCCCCccccCCCC
Q psy11730 183 GTGIHIDPLGTNPDDGDVKDDSPAVESKEFK 213 (496)
Q Consensus 183 ~T~lH~D~~~~~~~~~~~~~~~~~~~~~~~~ 213 (496)
+|.||.|++.|.. |++.-+||
T Consensus 174 vTSlHkDhyENlY----------aViSGeKh 194 (437)
T KOG2508|consen 174 VTSLHKDHYENLY----------AVISGEKH 194 (437)
T ss_pred ccccccccccceE----------EEEeccce
Confidence 9999999999999 66665555
No 5
>KOG2132|consensus
Probab=99.70 E-value=5.3e-18 Score=163.06 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=101.3
Q ss_pred CCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecC------CCccccCHHHHHHHhhcCC
Q psy11730 60 VKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDN------HGYSKLGKKYRNQKFKCGE 133 (496)
Q Consensus 60 ~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~------~~~~~m~~~~f~~~~~~~~ 133 (496)
.+.++.++|..+++.+++|++++|.+.+|||+++|..+||...-|+..|+++... +...-|++.+|+..+....
T Consensus 132 ~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~l~~l~~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~ 211 (355)
T KOG2132|consen 132 EDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWSLGYLQQVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE 211 (355)
T ss_pred ccchHHHHHHHHhhcCCCceEEecccccchHhhhcchhHHHhcccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC
Confidence 4678999999999999999999999999999999999999999999999887321 1112788888887655443
Q ss_pred C-CCCC-----CccccccccccCCCCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730 134 D-NHGY-----SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP 195 (496)
Q Consensus 134 ~-~p~y-----~~~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~ 195 (496)
. ++.| ++++.+++..|+.+|+|...-.|+ .+...+..|+||+|+.||+|.||.+|..
T Consensus 212 p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~-----~~~v~~~~w~GpaGtV~pih~dp~hNi~ 274 (355)
T KOG2132|consen 212 PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFE-----NEVVDINAWIGPAGTVLPIHMDPWHNIL 274 (355)
T ss_pred ccccchhhhhhhhccchhhhhccCCCceeecCCCC-----ccccceeEEeccCCceecccccccccee
Confidence 3 3433 356789999999999886333221 1122334556999999999999998888
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=2.7e-14 Score=134.11 Aligned_cols=137 Identities=21% Similarity=0.261 Sum_probs=97.4
Q ss_pred CCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC----CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730 245 PLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV----AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY 320 (496)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~ 320 (496)
+.+..+.+..+...++....+-.....-+ -.-..++.+.. .+.|.+|||+|||.|.++..||+.| ..|+|+|+
T Consensus 13 d~~e~~~F~~la~~wwd~~g~f~~LH~~N--~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~ 89 (243)
T COG2227 13 DYKELDKFEALASRWWDPEGEFKPLHKIN--PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDA 89 (243)
T ss_pred CHHHHHHHHHHHhhhcCCCCceeeeeeec--cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecC
Confidence 33444566666666665432211111111 11123333333 3789999999999999999999999 68999999
Q ss_pred CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
++++++.|+..+...+ -++.+.....+++... .++||+|+|.++++|+++++.++..+ .+.|++
T Consensus 90 se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G 155 (243)
T COG2227 90 SEKPIEVAKLHALESG----VNIDYRQATVEDLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG 155 (243)
T ss_pred ChHHHHHHHHhhhhcc----ccccchhhhHHHHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc
Confidence 9999999998775433 3466777777777654 38999999999999999999988763 556654
No 7
>KOG1499|consensus
Probab=99.46 E-value=4.8e-14 Score=138.88 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=129.2
Q ss_pred cccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730 242 LRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY 320 (496)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~ 320 (496)
....||..+....+|++|+.+.+++..|+ ..+..+. .++++.|||+|||||.+++++|+.|+.+|+|+|.
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr---------~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~ 91 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYR---------NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEA 91 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHH---------HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEec
Confidence 56688999999999999999999988777 3333333 4789999999999999999999999999999999
Q ss_pred CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHh---hee-----eecCCC
Q psy11730 321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLL---TVW-----CLFPTH 389 (496)
Q Consensus 321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~---~~~-----~l~p~~ 389 (496)
|.-+ +.|.+-.. .| +...-|+++++.++++..+ .++.|+|+|.++-|++ .-++.++ .+| .++|..
T Consensus 92 S~ia-~~a~~iv~-~N-~~~~ii~vi~gkvEdi~LP-~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 92 SSIA-DFARKIVK-DN-GLEDVITVIKGKVEDIELP-VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred hHHH-HHHHHHHH-hc-CccceEEEeecceEEEecC-ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 9766 55544322 22 2345699999999998664 5899999999988877 2233333 123 666665
Q ss_pred CCcccEEEeeccCCcccccccchhhHhcCCCCC
Q psy11730 390 TPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQL 422 (496)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (496)
+ .+++.+..+..+....+.||.++|+..++
T Consensus 168 a---~l~l~~i~d~~~~~~~i~fW~~Vygfdms 197 (346)
T KOG1499|consen 168 A---TLYLAAIEDDSYKDDKIGFWDDVYGFDMS 197 (346)
T ss_pred c---eEEEEeccCchhhhhhcCccccccccchh
Confidence 5 68889999999999999999999996653
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=3.5e-13 Score=128.75 Aligned_cols=97 Identities=24% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
+|.+|||||||||..++.+++.. ..+|+|+|+|+.|++.++++....+ ..+++|+.+|++++|++ +++||+|++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~-D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFP-DNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCC-CCccCEEEee
Confidence 68999999999999999998765 4899999999999999999875543 33499999999999976 8999999999
Q ss_pred cccccccchHhHhhe--eeecCCC
Q psy11730 368 ETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
..|.++++++.++++ +++.|++
T Consensus 127 fglrnv~d~~~aL~E~~RVlKpgG 150 (238)
T COG2226 127 FGLRNVTDIDKALKEMYRVLKPGG 150 (238)
T ss_pred ehhhcCCCHHHHHHHHHHhhcCCe
Confidence 999999999999998 4888877
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=1.1e-12 Score=127.56 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=92.5
Q ss_pred ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.++...-++.+.+...++ |.+|||||||+|.+++.+|+....+|+|+++|++|.+.++++....+ ...++++...|+
T Consensus 54 ~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~ 131 (283)
T COG2230 54 EEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccc
Confidence 455566677888877766 88999999999999999999988899999999999999998765543 346999999999
Q ss_pred CCccccCCCceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH 389 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~ 389 (496)
.++. +.||.|+|.++++|+.. .+.+|+.. .|.|+|
T Consensus 132 rd~~----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G 170 (283)
T COG2230 132 RDFE----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGG 170 (283)
T ss_pred cccc----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCc
Confidence 9874 55999999999999965 88888763 444544
No 10
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.35 E-value=4.4e-13 Score=130.34 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=77.7
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
+++|++|||||||+|+++..|+..|++.|+|||.+.........-+... +....+.++...+++++. .+.||+|+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~lplgvE~Lp~--~~~FDtVF~ 188 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFELPLGVEDLPN--LGAFDTVFS 188 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh--CCCccEEEcCcchhhccc--cCCcCEEEE
Confidence 7899999999999999999999999999999999998876533221111 122334445467778776 578999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
..++||..++-..++.. .|.|+|.
T Consensus 189 MGVLYHrr~Pl~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 189 MGVLYHRRSPLDHLKQLKDSLRPGGE 214 (315)
T ss_pred eeehhccCCHHHHHHHHHHhhCCCCE
Confidence 99999999999988764 5666654
No 11
>KOG1270|consensus
Probab=99.34 E-value=7.2e-13 Score=125.27 Aligned_cols=96 Identities=27% Similarity=0.360 Sum_probs=77.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCC----ceEEEecccCCccccCCCceeEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLE----KCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
.|++|||+|||+|.++..||+.| +.|+|||++++|++.|+... ..+..... ++.+.+.++++. .+.||.|
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~----~~~fDaV 162 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGL----TGKFDAV 162 (282)
T ss_pred CCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhc----cccccee
Confidence 36889999999999999999999 58999999999999999873 33322233 366777777765 4569999
Q ss_pred EEccccccccchHhHhhee--eecCCCC
Q psy11730 365 LTSETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 365 i~~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+|.++++|+.+++.++... .+.|++.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 9999999999999998763 6677653
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.31 E-value=7.1e-12 Score=112.84 Aligned_cols=98 Identities=27% Similarity=0.386 Sum_probs=78.7
Q ss_pred CCCeEEEecCcCCHHHHHHH-HccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTL-MNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la-~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||||||+|.++..++ +.++ .+++|+|+|++|++.|++.....+ ..+++|.++|+.+++....+.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccCCCeeEEEE
Confidence 46799999999999999999 4444 789999999999999998654332 458999999999965321279999999
Q ss_pred ccccccccchHhHhhee--eecCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
..+++++.++..+++.. .+.+++
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCc
Confidence 99999999999888763 444444
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=7.2e-12 Score=123.08 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||||||+|.++..+++. +. .+|+|+|+|++|++.|+++..........+++++.+|+++++.. +++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD-DCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-CCCEeEEEE
Confidence 4789999999999999998876 43 68999999999999998654221112345899999999998764 679999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+.++++++++..+++++ .|.|+|.
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCcE
Confidence 99999999999999884 6777663
No 14
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.30 E-value=4.6e-12 Score=124.71 Aligned_cols=113 Identities=24% Similarity=0.282 Sum_probs=83.7
Q ss_pred ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
-++....++.+.+...++ |.+|||||||+|.+++.+++....+|+||.+|+++++.++++....+ ...++++..+|+
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~ 121 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-G
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeec
Confidence 445556677888777765 78999999999999999999866799999999999999987765443 456899999998
Q ss_pred CCccccCCCceeEEEEccccccc--cchHhHhhe--eeecCCCC
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSV--ANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~--~~l~p~~~ 390 (496)
.+++ .+||.|+|.++++|+ .+.+.+++. ..|.|+|.
T Consensus 122 ~~~~----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 122 RDLP----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp GG-------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred cccC----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 8764 499999999999999 677888877 36677653
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.30 E-value=5.7e-12 Score=103.05 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=73.7
Q ss_pred EEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc
Q psy11730 294 LDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 294 LDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
||||||+|..+..+++.+..+|+|+|+|+++++.++++.. ..++.+..+|+++++.. +++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------~~~~~~~~~d~~~l~~~-~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------NEGVSFRQGDAEDLPFP-DNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------TSTEEEEESBTTSSSS--TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------ccCchheeehHHhCccc-cccccccccccceeec
Confidence 8999999999999999977899999999999999988652 34566999999999765 7999999999999999
Q ss_pred cchHhHhhe--eeecCCC
Q psy11730 374 ANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 374 ~~~~~~~~~--~~l~p~~ 389 (496)
++...++++ ..|.|+|
T Consensus 74 ~~~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGG 91 (95)
T ss_dssp SHHHHHHHHHHHHEEEEE
T ss_pred cCHHHHHHHHHHHcCcCe
Confidence 999999887 3566654
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.29 E-value=3.4e-12 Score=122.89 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||+|||||.++..+++. ++ .+|+|+|+|+.|++.++++....+ ..+++++++|+++++.. +++||+|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~-d~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFP-DNSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S--TT-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCC-CCceeEEE
Confidence 36789999999999999998875 33 699999999999999998765432 34999999999999876 79999999
Q ss_pred EccccccccchHhHhhe--eeecCCCC
Q psy11730 366 TSETIYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 366 ~~~~l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
+...++.++|.+..+++ +.|.|+|.
T Consensus 122 ~~fglrn~~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 122 CSFGLRNFPDRERALREMYRVLKPGGR 148 (233)
T ss_dssp EES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred HHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence 99999999999999988 47888774
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.28 E-value=1.2e-11 Score=126.20 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCC------CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 276 FDLLNFIKDNVAV------DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 276 ~~l~~~l~~~~~~------~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
..+++.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++.... +...+++|+.+|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--GLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcC
Confidence 3455555554443 47799999999999999999876679999999999999988754332 234579999999
Q ss_pred cCCccccCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730 350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
+.+++.. +++||+|++..+++|+++...++++ ..|.|+|.
T Consensus 177 ~~~~~~~-~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 177 ALNQPFE-DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGR 218 (340)
T ss_pred cccCCCC-CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcE
Confidence 9887654 6899999999999999999998887 36777663
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=1.1e-11 Score=125.34 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=83.9
Q ss_pred HHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730 281 FIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS 359 (496)
Q Consensus 281 ~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 359 (496)
.+.... ++++++|||||||+|.++..++..|+..|+|+|+|+.|+..++..... .....++.|+.+++++++. .+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--~~~~~~i~~~~~d~e~lp~--~~ 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--LGNDQRAHLLPLGIEQLPA--LK 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--cCCCCCeEEEeCCHHHCCC--cC
Confidence 334343 478899999999999999999999988899999999998754332111 1123579999999998876 67
Q ss_pred ceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730 360 KFDIILTSETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
.||+|+|..++||..++..+++.. .|.|+|.
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGE 221 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcE
Confidence 899999999999999999998873 6666654
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=7.7e-12 Score=106.16 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
++.+|||||||+|.+++.+++. ...+|+|+|+|++|++.++++... .....+++++++|+ .......+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--EGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--TTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--cCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 4789999999999999999983 557899999999999999987633 23568999999999 3333325789999999
Q ss_pred c-ccccc---cchHhHhhee--eecCCC
Q psy11730 368 E-TIYSV---ANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 368 ~-~l~~~---~~~~~~~~~~--~l~p~~ 389 (496)
. .++++ ++...+++.. .|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCc
Confidence 9 54433 3334455432 445543
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=1.4e-11 Score=123.28 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=82.8
Q ss_pred HHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730 280 NFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS 359 (496)
Q Consensus 280 ~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 359 (496)
..+.....+++++|||||||+|.++..++..|+..|+|+|+|+.|+..++..... .....++.+...++++++. ..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--~~~~~~v~~~~~~ie~lp~--~~ 187 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--LDNDKRAILEPLGIEQLHE--LY 187 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--hccCCCeEEEECCHHHCCC--CC
Confidence 3333334578999999999999999999999988999999999998764321111 1123577888888888765 35
Q ss_pred ceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730 360 KFDIILTSETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
.||+|+|+.+++|..++..++++. .|.|+|.
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGE 220 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCE
Confidence 899999999999999999988873 6777664
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.25 E-value=7.7e-12 Score=125.73 Aligned_cols=99 Identities=24% Similarity=0.285 Sum_probs=81.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
..+.+|||||||+|.++..+++.+ .+|+|||+|++|++.|+.+.... ....++.++++++++++.. +++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~-~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADE-GRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhc-cCCCCEEEEh
Confidence 457799999999999999988765 58999999999999998653211 1235799999999887653 5799999999
Q ss_pred cccccccchHhHhhee--eecCCCC
Q psy11730 368 ETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
.+++|+.++..+++.. +|.|+|.
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 9999999999999873 6677663
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=1.5e-11 Score=120.44 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
...+.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|+++.... +...+++++++|+.++.....++||+|++
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3457799999999999999999886 58999999999999998765332 23467899999998875434679999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
..+++|+.++..+++.. .|.|+|.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGA 144 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeE
Confidence 99999999999888763 6666653
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.22 E-value=3.5e-11 Score=117.93 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=76.8
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
.++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.++++ +++++.+|++++.. .++||+|++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~--~~~fD~v~~ 95 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWKP--KPDTDVVVS 95 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCCC--CCCceEEEE
Confidence 4578999999999999999988754 6899999999999998753 47789999887642 579999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+.+++|++++..+++++ .|.|+|.
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELAPGSW 121 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCCCCcE
Confidence 99999999999888773 6777663
No 24
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=5.1e-11 Score=114.50 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=78.0
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
+++.+..... .+.+|||||||||.++..+++....+|+|+|+|++|++.|+++. .++++|+++++..
T Consensus 41 ~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~- 107 (226)
T PRK05785 41 LVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFR- 107 (226)
T ss_pred HHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCC-
Confidence 4444443322 36799999999999999998875568999999999999987542 3478898888764
Q ss_pred CCceeEEEEccccccccchHhHhhee--eecC
Q psy11730 358 HSKFDIILTSETIYSVANYNKLLTVW--CLFP 387 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p 387 (496)
+++||+|++..+++++++++.++++. .+.|
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999873 5665
No 25
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.20 E-value=2.2e-10 Score=111.87 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=80.1
Q ss_pred HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
++.+.+... ..+.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++. ..+.++.+|+++++..
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~- 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA- 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC-
Confidence 344444333 246799999999999999988765 68999999999999988653 1346788999887654
Q ss_pred CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
+++||+|+++.++++..++..+++++ .+.|+|
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG 134 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence 57899999999999999999998874 566665
No 26
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.18 E-value=5e-12 Score=105.13 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=56.6
Q ss_pred EEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEccccc
Q psy11730 294 LDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIY 371 (496)
Q Consensus 294 LDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~ 371 (496)
||||||+|.++..++.... .+++|+|+|+.|++.++++..... ..+......+..+..... .++||+|++..+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 7999999999999988744 789999999999988888865433 223333443333332221 25999999999999
Q ss_pred cccchHhHhhee--eecCCC
Q psy11730 372 SVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 372 ~~~~~~~~~~~~--~l~p~~ 389 (496)
|++++..+++.. .|.|+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-
T ss_pred hhhhHHHHHHHHHHHcCCCC
Confidence 999999988863 555554
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.17 E-value=7.6e-11 Score=110.93 Aligned_cols=97 Identities=27% Similarity=0.350 Sum_probs=76.3
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.+++..... ...++++...|+.+.+. .++||+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~I~~~ 102 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLTF--DGEYDFILST 102 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCCc--CCCcCEEEEe
Confidence 357899999999999999999886 48999999999999988765332 23568889999887654 4679999999
Q ss_pred ccccccc--chHhHhhee--eecCCCC
Q psy11730 368 ETIYSVA--NYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 368 ~~l~~~~--~~~~~~~~~--~l~p~~~ 390 (496)
.++++++ +...+++.+ .|.|+|.
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 9998874 456666653 5666653
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=8.1e-11 Score=108.10 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=82.7
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
-.++..|++.+... .+++|||+|||+|.+++.+++.++. +|+++|+|+.+++.++++...++ ..+++++..|+
T Consensus 17 d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~ 90 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESST
T ss_pred CHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---ccccccccccc
Confidence 34667788888876 6789999999999999999998885 89999999999999887654433 33399999998
Q ss_pred CCccccCCCceeEEEEccccccccc-----hHhHhhe--eeecCCCC
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVAN-----YNKLLTV--WCLFPTHT 390 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~-----~~~~~~~--~~l~p~~~ 390 (496)
.+... ..+||+|++++|++.-.+ ...+++. ..|.|+|.
T Consensus 91 ~~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 91 FEALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp TTTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence 76443 589999999999776644 3444433 36667664
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.15 E-value=1.4e-10 Score=113.66 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=80.6
Q ss_pred HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
+..+..... .++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.++++. .++.|+.+|+.++..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~~- 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQP- 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccCC-
Confidence 333334333 3478999999999999999988754 79999999999999987642 468889999876643
Q ss_pred CCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 357 IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
..+||+|+++.+++|+.+...+++.+ .|.|+|
T Consensus 91 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG 124 (258)
T PRK01683 91 -PQALDLIFANASLQWLPDHLELFPRLVSLLAPGG 124 (258)
T ss_pred -CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCc
Confidence 56999999999999999998888774 566665
No 30
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.6e-10 Score=104.66 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
..++..+....++.|+.|+|+|||||.+++.++..|+..|+|+|+++++++.++++... ...++.|+.+|+.++
T Consensus 32 a~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f~~~dv~~~-- 105 (198)
T COG2263 32 AYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----LLGDVEFVVADVSDF-- 105 (198)
T ss_pred HHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----hCCceEEEEcchhhc--
Confidence 34455555667789999999999999999999999999999999999999999987644 467899999999887
Q ss_pred cCCCceeEEEEccccccc
Q psy11730 356 VIHSKFDIILTSETIYSV 373 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~~ 373 (496)
...+|.++.|+++--.
T Consensus 106 --~~~~dtvimNPPFG~~ 121 (198)
T COG2263 106 --RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred --CCccceEEECCCCccc
Confidence 5788999999998655
No 31
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.14 E-value=9.8e-11 Score=107.81 Aligned_cols=122 Identities=28% Similarity=0.431 Sum_probs=74.9
Q ss_pred cCceeeecchHHHHHHHHhCC-------CCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCccccccc
Q psy11730 266 EGGYKIWECTFDLLNFIKDNV-------AVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNT 337 (496)
Q Consensus 266 ~~~~~~~~~~~~l~~~l~~~~-------~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~ 337 (496)
..|.++|+++..|+++|.... ...+++|||||||+|..++.+++. +..+|+..|.++ .+..++.+. ..|.
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni-~~N~ 92 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI-ELNG 92 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH-HTT-
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH-Hhcc
Confidence 457889999999999999952 467899999999999999999998 678999999999 777666443 3332
Q ss_pred -CCCCceEEEecccCCcc---ccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 338 -DNLEKCKFYHGDWGSLS---AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 338 -~~~~~v~~~~~d~~~~~---~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
....++.+...+|.+.. ......||+|++.+++|.....+.+++.. .+.|++
T Consensus 93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred ccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence 34678899999997632 11135899999999999998888888763 344443
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=7.9e-11 Score=98.38 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=65.4
Q ss_pred EEEecCcCCHHHHHHHHcc---C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE-c
Q psy11730 293 VLDVGCGAGLLGLYTLMNG---A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT-S 367 (496)
Q Consensus 293 VLDlGcGtG~~~~~la~~~---~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~-~ 367 (496)
|||||||+|..+..++... + .+++|+|+|++|++.++++.... ..+++++++|+.+++.. .++||+|++ .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~-~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFS-DGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHH-SSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCccc-CCCeeEEEEcC
Confidence 7999999999999998874 3 79999999999999998776442 23899999999998754 679999999 4
Q ss_pred cccccccc--hHhHhhe
Q psy11730 368 ETIYSVAN--YNKLLTV 382 (496)
Q Consensus 368 ~~l~~~~~--~~~~~~~ 382 (496)
.+++|+++ ...+++.
T Consensus 76 ~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRR 92 (101)
T ss_dssp TGGGGSSHHHHHHHHHH
T ss_pred CccCCCCHHHHHHHHHH
Confidence 55888753 3445543
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.12 E-value=2.5e-10 Score=112.23 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=82.5
Q ss_pred HHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 279 LNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 279 ~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
...+.....+ ++.+|||||||+|..+..++.....+|+|+|+|+.|++.++++... ..++.+..+|+.+.+..
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~- 114 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP- 114 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC-
Confidence 3444444443 5789999999999999998876557999999999999998876522 35799999998876543
Q ss_pred CCceeEEEEcccccccc--chHhHhhee--eecCCCC
Q psy11730 358 HSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~~ 390 (496)
+++||+|++..+++|++ +...++++. .|.|++.
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 57999999999998885 777788763 6677664
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.11 E-value=2.6e-10 Score=109.89 Aligned_cols=105 Identities=26% Similarity=0.330 Sum_probs=83.7
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.+++.+.......+.+|||||||+|.++..+++.++ .+++|+|+|+.++..++.+. ..++.++.+|+++.+.
T Consensus 22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~ 94 (240)
T TIGR02072 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPL 94 (240)
T ss_pred HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCC
Confidence 344444433334567999999999999999998876 67999999999999887654 2378899999988765
Q ss_pred cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
. .++||+|++..+++|..++..++..+ .+.|+|
T Consensus 95 ~-~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G 129 (240)
T TIGR02072 95 E-DSSFDLIVSNLALQWCDDLSQALSELARVLKPGG 129 (240)
T ss_pred C-CCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCc
Confidence 3 57899999999999999999888763 566655
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=3.5e-10 Score=120.84 Aligned_cols=97 Identities=26% Similarity=0.305 Sum_probs=80.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
++.+|||||||+|.+++.++.....+|+|+|+|+.|++.|+++.. ....+++|..+|+.+.+.. +++||+|+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----~~~~~v~~~~~d~~~~~~~-~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----GRKCSVEFEVADCTKKTYP-DNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----cCCCceEEEEcCcccCCCC-CCCEEEEEECC
Confidence 477999999999999999988766789999999999999886542 2235789999999876643 57899999999
Q ss_pred ccccccchHhHhhee--eecCCCC
Q psy11730 369 TIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 369 ~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+++|+++++.+++++ .|.|+|.
T Consensus 341 ~l~h~~d~~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 341 TILHIQDKPALFRSFFKWLKPGGK 364 (475)
T ss_pred cccccCCHHHHHHHHHHHcCCCeE
Confidence 999999999998873 6666653
No 36
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=1.7e-10 Score=105.58 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=73.9
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc-cccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL-SAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Ii~~ 367 (496)
+|.+|||||||.|.+...|.+......+|+|++++.+..+.++ .+.++++|+++- ...++++||+||.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 5899999999999999999887778899999999999888765 467899998864 44558999999999
Q ss_pred cccccccchHhHhhe
Q psy11730 368 ETIYSVANYNKLLTV 382 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~ 382 (496)
.+++++.+++.++++
T Consensus 83 qtLQ~~~~P~~vL~E 97 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEE 97 (193)
T ss_pred hHHHhHhHHHHHHHH
Confidence 999999999999876
No 37
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=1e-10 Score=111.89 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=89.1
Q ss_pred cccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730 264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK 342 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~ 342 (496)
+...+|++--++..|+.+.... ..++|||||||+|.+++.+|++.. .+|+|||+.++|++.|+++... +....+
T Consensus 22 q~~~~~~~~~DaiLL~~~~~~~---~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--n~l~~r 96 (248)
T COG4123 22 QDRCGFRYGTDAILLAAFAPVP---KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--NPLEER 96 (248)
T ss_pred eCCCccccccHHHHHHhhcccc---cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--Ccchhc
Confidence 4566788788888888888643 378999999999999999999855 8999999999999999876543 246789
Q ss_pred eEEEecccCCccccCC-CceeEEEEccccccccch
Q psy11730 343 CKFYHGDWGSLSAVIH-SKFDIILTSETIYSVANY 376 (496)
Q Consensus 343 v~~~~~d~~~~~~~~~-~~fD~Ii~~~~l~~~~~~ 376 (496)
++++++|+.++..... .+||+|+||++++-....
T Consensus 97 i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 97 IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred eeEehhhHHHhhhcccccccCEEEeCCCCCCCccc
Confidence 9999999998876544 469999999999887443
No 38
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=3e-10 Score=109.42 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=79.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.++++.... ...+++++.+|.++++.. .++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~V~~ 120 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD-DNSFDYVTI 120 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC-CCCccEEEE
Confidence 4789999999999999998876 33 68999999999999988765332 246899999999887643 579999999
Q ss_pred ccccccccchHhHhhee--eecCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
..++++++++..++++. .|.|++
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGG 145 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCe
Confidence 99999999999888763 555655
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.09 E-value=2.2e-10 Score=106.23 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=70.1
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
+++.+|||||||+|.+++.++..++ .+|+|+|.|+.|++.++++.... ...+++++.+|++++.. .++||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~~--~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQH--EEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhccc--cCCccEEEe
Confidence 4588999999999999999887765 68999999999999887654332 24579999999988642 579999999
Q ss_pred ccccccccchHhHhheeeecCCC
Q psy11730 367 SETIYSVANYNKLLTVWCLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~~l~p~~ 389 (496)
+. ++++++.-..+. ..|.|+|
T Consensus 116 ~~-~~~~~~~~~~~~-~~LkpgG 136 (181)
T TIGR00138 116 RA-LASLNVLLELTL-NLLKVGG 136 (181)
T ss_pred hh-hhCHHHHHHHHH-HhcCCCC
Confidence 76 444433322221 1355655
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=1.2e-10 Score=107.01 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=80.5
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
....+|.|||||+|..+..|+++.+ ..|+|||-|++|++.|+.+ ..+++|..+|+.+... ...+|+|++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~p--~~~~dllfa 98 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWKP--EQPTDLLFA 98 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcCC--CCccchhhh
Confidence 3477999999999999999999877 8999999999999999765 5788999999887654 568999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
|-+++++++...++..+ .|-|++.
T Consensus 99 NAvlqWlpdH~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVSQLAPGGV 124 (257)
T ss_pred hhhhhhccccHHHHHHHHHhhCCCce
Confidence 99999999999999874 5666653
No 41
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.07 E-value=3.8e-10 Score=106.68 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=67.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
++.+|||||||+|.++..+++. +..+++|+|+|++|++.|+++. .++.+..+|+.+ +. .+++||+|+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~-~~~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PF-KDNFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CC-CCCCEEEEEEC
Confidence 5678999999999999999876 4578999999999999998643 356778888877 33 36899999999
Q ss_pred ccccccc--chHhHhhe
Q psy11730 368 ETIYSVA--NYNKLLTV 382 (496)
Q Consensus 368 ~~l~~~~--~~~~~~~~ 382 (496)
.+++|++ +...++++
T Consensus 113 ~vL~hl~p~~~~~~l~e 129 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRE 129 (204)
T ss_pred ChhhhCCHHHHHHHHHH
Confidence 9999984 23444443
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.07 E-value=3.4e-10 Score=106.32 Aligned_cols=95 Identities=21% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.++++....+ . ++.+...|+...+. .++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~---~-~v~~~~~d~~~~~~--~~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAREN---L-PLRTDAYDINAAAL--NEDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhC---C-CceeEeccchhccc--cCCCCEEEEec
Confidence 56799999999999999999886 489999999999999876553322 1 36677777765443 46899999999
Q ss_pred cccccc--chHhHhhee--eecCCCC
Q psy11730 369 TIYSVA--NYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 369 ~l~~~~--~~~~~~~~~--~l~p~~~ 390 (496)
++++++ +...+++.+ .|.|+|.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 999884 455666652 5666653
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.05 E-value=4.3e-10 Score=101.48 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.++++|||||||+|.++..++..+. +|+|+|+|+.+++. . ++.+...+...... ..++||+|+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-~------------~~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-R------------NVVFDNFDAQDPPF-PDGSFDLIICN 85 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-T------------TSEEEEEECHTHHC-HSSSEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-h------------hhhhhhhhhhhhhc-cccchhhHhhH
Confidence 4688999999999999999988877 89999999999987 1 11112222222222 26899999999
Q ss_pred cccccccchHhHhhee--eecCCC
Q psy11730 368 ETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
.+++|++++..+++.+ .+.|+|
T Consensus 86 ~~l~~~~d~~~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 86 DVLEHLPDPEEFLKELSRLLKPGG 109 (161)
T ss_dssp SSGGGSSHHHHHHHHHHHCEEEEE
T ss_pred HHHhhcccHHHHHHHHHHhcCCCC
Confidence 9999999999999874 666664
No 44
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=4.4e-10 Score=109.58 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=81.7
Q ss_pred chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc---cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN---GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~---~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.-..++..+......++.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|+++....+ ...+++++.+|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~ 118 (247)
T PRK15451 41 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDI 118 (247)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCCh
Confidence 3333444444433346789999999999999988773 33799999999999999988764322 245799999999
Q ss_pred CCccccCCCceeEEEEccccccccch--HhHhhee--eecCCCC
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTHT 390 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~~ 390 (496)
.+++. ..+|+|+++.+++|+++. ..+++++ .|.|+|.
T Consensus 119 ~~~~~---~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 119 RDIAI---ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGA 159 (247)
T ss_pred hhCCC---CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCE
Confidence 88763 459999999999998643 4566653 5666653
No 45
>KOG1540|consensus
Probab=99.04 E-value=8.3e-10 Score=104.05 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=100.1
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccC-------CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGA-------AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS 359 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~-------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 359 (496)
+..+.+|||++||||.++..+...-. .+|+.+|+|++|++.+++++.+........+.++.+|+++++++ +.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd-d~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD-DD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC-CC
Confidence 34578999999999999999876322 68999999999999999998765545556699999999999965 79
Q ss_pred ceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCCcc-cccccchhhHhcCCCC
Q psy11730 360 KFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGGKQ-RDEAITWFSIIYPRTQ 421 (496)
Q Consensus 360 ~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 421 (496)
+||..++..-|....++++.+++ +.|.|++. .... .+.. ....+.||.+.|....
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGr----f~cL---eFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGR----FSCL---EFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcE----EEEE---EccccccHHHHHHHHhhhhhh
Confidence 99999999999999999999988 57888773 2222 1222 2356777777666543
No 46
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=7.3e-10 Score=113.49 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=72.8
Q ss_pred CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.+|||||||+|.+++.+++.++ .+|+++|.|+.|++.++++...++.....++++...|..+... ..+||+|+|++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--CCCEEEEEECc
Confidence 46999999999999999998876 6999999999999999876543332223578999888754321 45899999999
Q ss_pred cccccc-----chHhHhhe--eeecCCCC
Q psy11730 369 TIYSVA-----NYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 369 ~l~~~~-----~~~~~~~~--~~l~p~~~ 390 (496)
++|... ....+++. ..|.|+|.
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 997652 12344433 25666653
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.03 E-value=6.3e-10 Score=103.52 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.+|||||||+|..++.++... ..+|+|+|.|++|++.++++....+ ..+++++++|++++.. .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC--CCCccEEEEcc
Confidence 7899999999999999988744 4799999999999999987664433 3459999999988765 57899999975
Q ss_pred ccccccchHhHhhe--eeecCCCC
Q psy11730 369 TIYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 369 ~l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
+.+++.+++. ..+.|++.
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGR 140 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeE
Confidence 3455666654 25666653
No 48
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.02 E-value=9.2e-10 Score=103.31 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC-ccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-LSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Ii~~ 367 (496)
++.+|||||||+|.++..++..+...++|+|+|++|++.++.+ +++++.+|+.+ +....+++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 5679999999999999998877667789999999999987642 35778888865 322335789999999
Q ss_pred cccccccchHhHhhe
Q psy11730 368 ETIYSVANYNKLLTV 382 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~ 382 (496)
.+++|+.++..++++
T Consensus 83 ~~l~~~~d~~~~l~e 97 (194)
T TIGR02081 83 QTLQATRNPEEILDE 97 (194)
T ss_pred hHhHcCcCHHHHHHH
Confidence 999999999998876
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.01 E-value=1.4e-09 Score=109.90 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=79.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+.+|||||||+|.+++.+++.. ..+|+++|+|++|++.++++.. ..+++++.+|+++++.. .++||+|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~-~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFP-TDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCC-CCceeEEEEc
Confidence 46799999999999999987753 4789999999999999887541 34688999999887654 5789999999
Q ss_pred cccccccchHhHhhee--eecCCCC
Q psy11730 368 ETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
.+++++++.+.++++. .|.|++.
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGK 210 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcE
Confidence 9999999999888873 6777664
No 50
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.4e-10 Score=109.20 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=75.5
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.+++..|++.+.......+.+|||||||||.+++.++...+ ..|+|+|+|+.+++.|++++..++. .++.++.+|+
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dl 169 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDL 169 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeec
Confidence 77888888876533322223899999999999999999888 5999999999999999987765542 5667777776
Q ss_pred CCccccCCCceeEEEEcccccccc
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~ 374 (496)
.+.. .++||+|+||+|+-..+
T Consensus 170 f~~~---~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 170 FEPL---RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cccc---CCceeEEEeCCCCCCCc
Confidence 6543 45999999999975554
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.00 E-value=7e-10 Score=110.59 Aligned_cols=95 Identities=26% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
+++++|||||||+|.+++.+++.| .+|+|+|+|+.|++.++++....+ . ++++...|+..... .++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~---l-~v~~~~~D~~~~~~--~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKEN---L-NIRTGLYDINSASI--QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEechhcccc--cCCccEEEEc
Confidence 356799999999999999999887 589999999999999886653322 2 68888888876544 6789999999
Q ss_pred ccccccc--chHhHhhee--eecCCC
Q psy11730 368 ETIYSVA--NYNKLLTVW--CLFPTH 389 (496)
Q Consensus 368 ~~l~~~~--~~~~~~~~~--~l~p~~ 389 (496)
.++++++ +...+++.. .+.|+|
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 9999884 555666652 566655
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.00 E-value=1.8e-09 Score=99.96 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=72.4
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
.+++..|...+.. .++++|||+|||+|.++..++..+. +|+|+|+|++|++.++++....+ .+++++.+|+.
T Consensus 5 ~~d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~ 76 (179)
T TIGR00537 5 AEDSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLF 76 (179)
T ss_pred CccHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC----CceEEEEcccc
Confidence 3455556665543 3567899999999999999998887 89999999999999887653222 25788889976
Q ss_pred CccccCCCceeEEEEccccccccc
Q psy11730 352 SLSAVIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l~~~~~ 375 (496)
+.. .++||+|++++++++.++
T Consensus 77 ~~~---~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 77 KGV---RGKFDVILFNPPYLPLED 97 (179)
T ss_pred ccc---CCcccEEEECCCCCCCcc
Confidence 643 468999999999887753
No 53
>PRK06202 hypothetical protein; Provisional
Probab=98.99 E-value=9.1e-10 Score=106.31 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=67.4
Q ss_pred CCCeEEEecCcCCHHHHHHHHc----cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN----GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDI 363 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~----~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 363 (496)
++.+|||||||+|.++..+++. |. .+|+|+|+|++|++.|+++.. ..++.+...+.+.++.. +++||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------~~~~~~~~~~~~~l~~~-~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------RPGVTFRQAVSDELVAE-GERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------cCCCeEEEEeccccccc-CCCccE
Confidence 5679999999999999988753 43 589999999999999887642 23466666666665542 679999
Q ss_pred EEEccccccccchH--hHhhe
Q psy11730 364 ILTSETIYSVANYN--KLLTV 382 (496)
Q Consensus 364 Ii~~~~l~~~~~~~--~~~~~ 382 (496)
|+++.++||+++.+ .++++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~ 153 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLAD 153 (232)
T ss_pred EEECCeeecCChHHHHHHHHH
Confidence 99999999998753 45554
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.99 E-value=7.4e-10 Score=106.19 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=78.1
Q ss_pred CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET 369 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~ 369 (496)
++|||||||+|.++..+++.++ .+|+|+|+|+++++.++.+.... +...+++++..|+.+.+. .++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~--~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPF--PDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCCC--CCCCCEeehHHH
Confidence 4799999999999999988764 68999999999999988765332 234578999999866543 468999999999
Q ss_pred cccccchHhHhhee--eecCCCC
Q psy11730 370 IYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 370 l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
++|+.+...+++.. .|.|+|.
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGH 99 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCE
Confidence 99999999888773 6677653
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.99 E-value=1.1e-09 Score=108.31 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||||||+|..++.+++. +. .+|+|+|+|+.|++.|+++.... ...++++..+|+++++.. ++.||+|++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~-~~~fD~Vi~ 152 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVA-DNSVDVIIS 152 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCC-CCceeEEEE
Confidence 5789999999999998877664 44 47999999999999998764332 235889999999887753 578999999
Q ss_pred ccccccccchHhHhhee--eecCCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+.++++.++...++++. .|.|++.
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGR 178 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcE
Confidence 99999999988888762 5666653
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.99 E-value=1.6e-09 Score=108.77 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=71.8
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccc
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~ 355 (496)
+++++......++.+|||||||+|.+++.+++.| .+|+|+|+|+.|++.++++...... ....++.|..+|++++
T Consensus 133 ~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-- 209 (315)
T PLN02585 133 VLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-- 209 (315)
T ss_pred HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence 3444443324567899999999999999999886 5899999999999999877533210 1234678888887654
Q ss_pred cCCCceeEEEEccccccccch
Q psy11730 356 VIHSKFDIILTSETIYSVANY 376 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~~~~~ 376 (496)
++.||+|+|..+++|+++.
T Consensus 210 --~~~fD~Vv~~~vL~H~p~~ 228 (315)
T PLN02585 210 --SGKYDTVTCLDVLIHYPQD 228 (315)
T ss_pred --CCCcCEEEEcCEEEecCHH
Confidence 5789999999999998653
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.97 E-value=1.7e-09 Score=111.78 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=78.1
Q ss_pred HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
..+.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|++|++.++++.. ..++++...|+.++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------~l~v~~~~~D~~~l--- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------GLPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------cCeEEEEECchhhc---
Confidence 34445444443 578999999999999999988766789999999999999987652 12477888887654
Q ss_pred CCCceeEEEEcccccccc--chHhHhhe--eeecCCC
Q psy11730 357 IHSKFDIILTSETIYSVA--NYNKLLTV--WCLFPTH 389 (496)
Q Consensus 357 ~~~~fD~Ii~~~~l~~~~--~~~~~~~~--~~l~p~~ 389 (496)
.++||+|++..+++|+. +++.+++. ..|.|+|
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG 261 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDG 261 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCc
Confidence 46899999999999984 45667765 2666765
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.9e-10 Score=107.90 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=69.1
Q ss_pred eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
+++.....+++|.+... ++++|||+|||||.+++.+++.|++.|+|+|+.+.+++.++.+...++... .++....+.
T Consensus 145 ~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~~ 221 (300)
T COG2264 145 THPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFLL 221 (300)
T ss_pred CChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch--hhhcccccc
Confidence 47777788888877654 899999999999999999999999999999999999999988664443211 111222222
Q ss_pred CCccccCCCceeEEEEcc
Q psy11730 351 GSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~ 368 (496)
...+. .+.||+|++|-
T Consensus 222 ~~~~~--~~~~DvIVANI 237 (300)
T COG2264 222 LEVPE--NGPFDVIVANI 237 (300)
T ss_pred hhhcc--cCcccEEEehh
Confidence 22221 36999999975
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.96 E-value=1.5e-09 Score=100.57 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
.+++.++||||||.|..+++||++|. .|+++|.|+..++.+++.+...+ -+++....|+++... .+.||+|++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~--~~~yD~I~s 100 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDF--PEEYDFIVS 100 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhccc--cCCcCEEEE
Confidence 35688999999999999999999998 59999999999998765443322 248888899888765 578999999
Q ss_pred cccccccc--chHhHhhee--eecCCC
Q psy11730 367 SETIYSVA--NYNKLLTVW--CLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~--~~~~~~~~~--~l~p~~ 389 (496)
..+++|+. ..+.+++.. .+.|+|
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG 127 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGG 127 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcE
Confidence 88888884 334455432 345544
No 60
>PRK08317 hypothetical protein; Provisional
Probab=98.95 E-value=3.5e-09 Score=101.92 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=84.0
Q ss_pred HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
+.+.+.....+ ++.+|||+|||+|.++..++... + .+|+|+|+|+.+++.++++.. ....++.+...|+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----GLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----CCCCceEEEecccccCC
Confidence 33444444443 47899999999999999998865 3 689999999999998876521 12457899999988766
Q ss_pred ccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730 355 AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
.. .+.||+|++..+++|+.++..+++.. .|.|+|.
T Consensus 83 ~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 83 FP-DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGR 119 (241)
T ss_pred CC-CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcE
Confidence 43 57899999999999999999988873 5666653
No 61
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.95 E-value=2.1e-09 Score=104.32 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=77.5
Q ss_pred HHhCCCCCCCeEEEecCcCCHHHHHHHHcc---CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730 282 IKDNVAVDKLSVLDVGCGAGLLGLYTLMNG---AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH 358 (496)
Q Consensus 282 l~~~~~~~~~~VLDlGcGtG~~~~~la~~~---~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 358 (496)
+.+....++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... ....+++++++|+.+++.
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~--- 120 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEI--- 120 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCC---
Confidence 433333467799999999999999988753 368999999999999998764321 224578999999988764
Q ss_pred CceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730 359 SKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH 389 (496)
Q Consensus 359 ~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~ 389 (496)
..+|+|+++.+++|+++ ...+++.+ .|.|++
T Consensus 121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG 155 (239)
T TIGR00740 121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 155 (239)
T ss_pred CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCe
Confidence 35899999999999854 45566653 566665
No 62
>PRK14967 putative methyltransferase; Provisional
Probab=98.95 E-value=2.5e-09 Score=102.66 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=76.4
Q ss_pred CceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE
Q psy11730 267 GGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY 346 (496)
Q Consensus 267 ~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~ 346 (496)
+.|..-.++..+++.+......++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.++++....+ .++.++
T Consensus 14 g~~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG----VDVDVR 89 (223)
T ss_pred CCcCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC----CeeEEE
Confidence 3344455667777777665444578999999999999999988876799999999999998876543222 257888
Q ss_pred ecccCCccccCCCceeEEEEccccccc
Q psy11730 347 HGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 347 ~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
.+|+.+... .++||+|++++++...
T Consensus 90 ~~d~~~~~~--~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 90 RGDWARAVE--FRPFDVVVSNPPYVPA 114 (223)
T ss_pred ECchhhhcc--CCCeeEEEECCCCCCC
Confidence 888876422 5789999999876543
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.93 E-value=1.6e-09 Score=107.31 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=69.5
Q ss_pred eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.++.....+++|.+. ..++++|||+|||||.+++.+++.|+++|+|+|+++.+++.|+.+...++. ..++.+. ..
T Consensus 144 ~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~ 218 (295)
T PF06325_consen 144 HHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LS 218 (295)
T ss_dssp HCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CT
T ss_pred CCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Ee
Confidence 477778888888776 446889999999999999999999999999999999999999887655442 2244432 22
Q ss_pred CCccccCCCceeEEEEccccccc
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
.+.. ...||+|++|-...-+
T Consensus 219 ~~~~---~~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 219 EDLV---EGKFDLVVANILADVL 238 (295)
T ss_dssp SCTC---CS-EEEEEEES-HHHH
T ss_pred cccc---cccCCEEEECCCHHHH
Confidence 2222 4899999997654444
No 64
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.92 E-value=3.1e-09 Score=101.60 Aligned_cols=88 Identities=25% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.++.+|||||||+|.++..++..+ .+|+|+|+|++|++.|+++....+ ...++.|..+|+.+++ ++||+|++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC----GEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC----CCcCEEEEh
Confidence 457899999999999999998775 489999999999999987653322 1247899999988764 789999999
Q ss_pred cccccccc--hHhHhhe
Q psy11730 368 ETIYSVAN--YNKLLTV 382 (496)
Q Consensus 368 ~~l~~~~~--~~~~~~~ 382 (496)
.+++|++. ...++..
T Consensus 127 ~~l~~~~~~~~~~~l~~ 143 (219)
T TIGR02021 127 DVLIHYPASDMAKALGH 143 (219)
T ss_pred hHHHhCCHHHHHHHHHH
Confidence 99988743 4445543
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.90 E-value=4.3e-09 Score=101.20 Aligned_cols=98 Identities=22% Similarity=0.369 Sum_probs=72.5
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
+..++......++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+ ...++.+..+|++..
T Consensus 52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~---- 124 (230)
T PRK07580 52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLESL---- 124 (230)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchhc----
Confidence 34444443334678999999999999999998875 59999999999999987653322 225788999885432
Q ss_pred CCceeEEEEccccccccc--hHhHhhe
Q psy11730 358 HSKFDIILTSETIYSVAN--YNKLLTV 382 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~--~~~~~~~ 382 (496)
.++||+|++..+++|+++ ...+++.
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~ 151 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAH 151 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHH
Confidence 578999999999988753 3445543
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.90 E-value=4.5e-09 Score=108.00 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=74.3
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
-+....+++.+.+... ++.+|||||||+|.+++.++... ..+|+|+|+|+.|++.|+++....+ .+++++++|+
T Consensus 235 RpeTE~LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl 309 (423)
T PRK14966 235 RPETEHLVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSW 309 (423)
T ss_pred CccHHHHHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcch
Confidence 4566677777766543 45699999999999999988764 4789999999999999987754322 3799999998
Q ss_pred CCccccCCCceeEEEEccccccc
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
.+......++||+|+|++|+...
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~ 332 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIEN 332 (423)
T ss_pred hccccccCCCccEEEECCCCCCc
Confidence 65432224579999999986543
No 67
>KOG1500|consensus
Probab=98.90 E-value=6.4e-10 Score=108.02 Aligned_cols=125 Identities=18% Similarity=0.301 Sum_probs=99.0
Q ss_pred cchhcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEE
Q psy11730 238 NIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSF 317 (496)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~g 317 (496)
++..+-..||-.++.......|+.+-++++.|. ...+.+..+++++.|||+|||+|+++.+.++.|+++|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~--------~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYA 205 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQ--------RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYA 205 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEE
Confidence 444445567777777777788888888777554 445556668999999999999999999999999999999
Q ss_pred EeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccc
Q psy11730 318 QDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 318 iD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~ 375 (496)
|+.| +|.+.|++-..-+ ....+|+++.+-++++.. .++.|+||+.++-+.+-|
T Consensus 206 vEAS-~MAqyA~~Lv~~N--~~~~rItVI~GKiEdieL--PEk~DviISEPMG~mL~N 258 (517)
T KOG1500|consen 206 VEAS-EMAQYARKLVASN--NLADRITVIPGKIEDIEL--PEKVDVIISEPMGYMLVN 258 (517)
T ss_pred Eehh-HHHHHHHHHHhcC--CccceEEEccCccccccC--chhccEEEeccchhhhhh
Confidence 9987 4667766543222 357899999999999887 689999999988887744
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.89 E-value=5.6e-09 Score=98.03 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
..+.+|||+|||+|.+++.++..++.+|+++|.++.+++.++++....+ ..+++++.+|+.+........||+|+++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 3578999999999999998777788899999999999998886543332 3479999999876432224579999999
Q ss_pred cccc
Q psy11730 368 ETIY 371 (496)
Q Consensus 368 ~~l~ 371 (496)
+++.
T Consensus 129 PPy~ 132 (199)
T PRK10909 129 PPFR 132 (199)
T ss_pred CCCC
Confidence 9953
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=9.3e-09 Score=97.38 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=75.4
Q ss_pred HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
+...+.+...+ ++.+|||||||+|..+..+++.. ..+|+++|+++++++.++++....+ ...++++..+|..+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence 34444444433 46899999999999999988754 3689999999999999886553322 2346899999987654
Q ss_pred ccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730 355 AVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH 389 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~ 389 (496)
.. ..+||+|++..++.+++ +.+++ .|.|+|
T Consensus 138 ~~-~~~fD~Ii~~~~~~~~~--~~l~~--~L~~gG 167 (205)
T PRK13944 138 EK-HAPFDAIIVTAAASTIP--SALVR--QLKDGG 167 (205)
T ss_pred cc-CCCccEEEEccCcchhh--HHHHH--hcCcCc
Confidence 32 57899999999988775 23443 345554
No 70
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.88 E-value=3.1e-09 Score=90.89 Aligned_cols=82 Identities=29% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~~~ 368 (496)
|.+|||+|||+|.+++.+++.+..+++|+|+++..++.++.+..... ...+++++++|+.+... ...++||+|++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEECC
Confidence 46899999999999999999887899999999999999887654432 34679999999988762 2368999999999
Q ss_pred ccccc
Q psy11730 369 TIYSV 373 (496)
Q Consensus 369 ~l~~~ 373 (496)
++...
T Consensus 79 P~~~~ 83 (117)
T PF13659_consen 79 PYGPR 83 (117)
T ss_dssp STTSB
T ss_pred CCccc
Confidence 98754
No 71
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=7.1e-09 Score=95.09 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730 280 NFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH 358 (496)
Q Consensus 280 ~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 358 (496)
+.+.+...+ .+.+|||||||+|.++..+++. ..+|+|+|+++.|++.++++.. ...+++++++|+.+++.. .
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~-----~~~~v~ii~~D~~~~~~~-~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFA-----AADNLTVIHGDALKFDLP-K 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhc-----cCCCEEEEECchhcCCcc-c
Confidence 334444443 4679999999999999999988 5789999999999999876542 135899999999988653 3
Q ss_pred CceeEEEEcccccc
Q psy11730 359 SKFDIILTSETIYS 372 (496)
Q Consensus 359 ~~fD~Ii~~~~l~~ 372 (496)
..||+|+++.+++-
T Consensus 76 ~~~d~vi~n~Py~~ 89 (169)
T smart00650 76 LQPYKVVGNLPYNI 89 (169)
T ss_pred cCCCEEEECCCccc
Confidence 56999999988764
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.87 E-value=1.1e-08 Score=101.92 Aligned_cols=109 Identities=24% Similarity=0.259 Sum_probs=74.3
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
++.....++++... ..++++|||+|||+|.+++.+++.|..+|+|+|+++.|++.|+++...++ ...++.+...+..
T Consensus 143 h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~ 219 (288)
T TIGR00406 143 HPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLE 219 (288)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecccc
Confidence 45555555555543 34678999999999999999988888899999999999999987654332 2234555655532
Q ss_pred CccccCCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730 352 SLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
.. ..++||+|+++.....+ ..++.. ..+.|++
T Consensus 220 ~~---~~~~fDlVvan~~~~~l---~~ll~~~~~~LkpgG 253 (288)
T TIGR00406 220 QP---IEGKADVIVANILAEVI---KELYPQFSRLVKPGG 253 (288)
T ss_pred cc---cCCCceEEEEecCHHHH---HHHHHHHHHHcCCCc
Confidence 22 25689999998765433 233333 2455654
No 73
>KOG4300|consensus
Probab=98.86 E-value=3.8e-09 Score=96.59 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=81.8
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceE-EEecccCCccccCCCceeEEEEccc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCK-FYHGDWGSLSAVIHSKFDIILTSET 369 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~fD~Ii~~~~ 369 (496)
..|||||||||..-.+.--.....||++|.|+.|-+++.+++.+. ...++. |+.++.++++...++++|+|++..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 368999999999987755555578999999999999998887554 355666 9999999998666899999999999
Q ss_pred cccccchHhHhhe--eeecCCCC
Q psy11730 370 IYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 370 l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
+....++.+.+++ .+|.|+|.
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGR 177 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcE
Confidence 9999999999987 37777764
No 74
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.85 E-value=1.2e-08 Score=96.94 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=78.6
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc---------ccCCCCceEE
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM---------NTDNLEKCKF 345 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~---------~~~~~~~v~~ 345 (496)
...|.+++......++.+|||+|||.|..+++||++|. .|+|+|+|+.+++.+.+.+... +.....++++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 34555655543223578999999999999999999876 6999999999999853322110 0012357999
Q ss_pred EecccCCccccCCCceeEEEEccccccccch--HhHhhe--eeecCCC
Q psy11730 346 YHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV--WCLFPTH 389 (496)
Q Consensus 346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~--~~l~p~~ 389 (496)
+++|+.++.....+.||.|+-..+++|++.. +..++. ..|.|++
T Consensus 99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG 146 (213)
T TIGR03840 99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGA 146 (213)
T ss_pred EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCC
Confidence 9999988765434679999998888888422 223333 2566655
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=8.1e-09 Score=100.94 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=76.3
Q ss_pred chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352 (496)
Q Consensus 274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~ 352 (496)
.+..|++.|... .+.+|||+|||.|.+++.+++..+ .+++.+|.|..+++.++++...++ .++..+...|..+
T Consensus 146 GS~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~ 219 (300)
T COG2813 146 GSRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE 219 (300)
T ss_pred HHHHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc
Confidence 344444444322 345999999999999999999887 899999999999999998765443 3333566666554
Q ss_pred ccccCCCceeEEEEccccccccchHh-----Hhhe--eeecCCCC
Q psy11730 353 LSAVIHSKFDIILTSETIYSVANYNK-----LLTV--WCLFPTHT 390 (496)
Q Consensus 353 ~~~~~~~~fD~Ii~~~~l~~~~~~~~-----~~~~--~~l~p~~~ 390 (496)
-. .++||.|+||+++|-=..... ++.. ..|.++|.
T Consensus 220 ~v---~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 220 PV---EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred cc---cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 43 349999999999996543332 3332 46677664
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.84 E-value=1.7e-08 Score=86.82 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=68.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++.... ...+++++.+|+..........||+|++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEEC
Confidence 467999999999999999988754 79999999999999988654332 24578888888765332224689999997
Q ss_pred cccccccchHhHhhe--eeecCCC
Q psy11730 368 ETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
...... ..+++. ..|.|++
T Consensus 96 ~~~~~~---~~~l~~~~~~Lk~gG 116 (124)
T TIGR02469 96 GSGGLL---QEILEAIWRRLRPGG 116 (124)
T ss_pred CcchhH---HHHHHHHHHHcCCCC
Confidence 765443 344443 1455554
No 77
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.84 E-value=1.6e-08 Score=97.51 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||||||+|.++..++..++ .+|+++|+++.+++.++++....+ ...++.+..+|+.+.+.. .+.||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~-~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFP-DNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCC-CCCccEEEE
Confidence 468999999999999999998885 899999999999999887653221 245789999998876643 578999999
Q ss_pred ccccccccchHhHhhee--eecCCC
Q psy11730 367 SETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
..++++..++..+++.. .+.|++
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGG 152 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCc
Confidence 99999999999888763 455544
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.83 E-value=8.3e-09 Score=94.78 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET 369 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~ 369 (496)
-.++||+|||.|.++..||.+. .+++++|+|+.+++.|+++.. ..++|+|.++++.+... .+.||+|+++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~-----~~~~V~~~~~dvp~~~P--~~~FDLIV~SEV 115 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLA-----GLPHVEWIQADVPEFWP--EGRFDLIVLSEV 115 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTT-----T-SSEEEEES-TTT-----SS-EEEEEEES-
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcC-----CCCCeEEEECcCCCCCC--CCCeeEEEEehH
Confidence 4589999999999999998876 689999999999999998752 35799999999877543 689999999999
Q ss_pred cccccchHh---Hhhee--eecCCC
Q psy11730 370 IYSVANYNK---LLTVW--CLFPTH 389 (496)
Q Consensus 370 l~~~~~~~~---~~~~~--~l~p~~ 389 (496)
+|++.+.+. ++... .|-|+|
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG 140 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGG 140 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 999976543 33331 455655
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.83 E-value=1.8e-08 Score=95.92 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=77.4
Q ss_pred hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
.-.+...+.+... .++.+|||||||+|.++..+++... .+|+++|+++++++.++++.... ...++++..+|..
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcc
Confidence 3344455555444 3578999999999999999887643 69999999999999998765432 2468999999987
Q ss_pred CccccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730 352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH 389 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~ 389 (496)
..... ...||+|++......++ +.+++ .|.|++
T Consensus 138 ~~~~~-~~~fD~I~~~~~~~~~~--~~l~~--~LkpgG 170 (212)
T PRK13942 138 LGYEE-NAPYDRIYVTAAGPDIP--KPLIE--QLKDGG 170 (212)
T ss_pred cCCCc-CCCcCEEEECCCcccch--HHHHH--hhCCCc
Confidence 65432 57899999987776553 33444 355555
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.83 E-value=1.5e-08 Score=100.28 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC----CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA----AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~----~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~ 352 (496)
.+++.|.+.....+.+|||+|||+|.++..+++..+ ..|+|+|+|+.|++.|+++ ..++.+..+|..+
T Consensus 73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------~~~~~~~~~d~~~ 144 (272)
T PRK11088 73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVASSHR 144 (272)
T ss_pred HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--------CCCCeEEEeeccc
Confidence 345555555444567899999999999999887543 3799999999999998754 2468899999988
Q ss_pred ccccCCCceeEEEEccc
Q psy11730 353 LSAVIHSKFDIILTSET 369 (496)
Q Consensus 353 ~~~~~~~~fD~Ii~~~~ 369 (496)
++.. +++||+|++...
T Consensus 145 lp~~-~~sfD~I~~~~~ 160 (272)
T PRK11088 145 LPFA-DQSLDAIIRIYA 160 (272)
T ss_pred CCCc-CCceeEEEEecC
Confidence 8754 679999998655
No 81
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.81 E-value=7.3e-09 Score=104.63 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
..+.+|||+|||+|.+++.++..+ .+|+|+|+|+.|++.|+++....+ ..+++|+.+|+.++.....+.||+|+++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 457899999999999999999876 689999999999999887654432 3689999999987654224579999999
Q ss_pred cccc
Q psy11730 368 ETIY 371 (496)
Q Consensus 368 ~~l~ 371 (496)
++-.
T Consensus 248 PPr~ 251 (315)
T PRK03522 248 PPRR 251 (315)
T ss_pred CCCC
Confidence 8843
No 82
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.81 E-value=7.1e-09 Score=97.92 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=63.9
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc-CCccc-cCCCceeEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW-GSLSA-VIHSKFDIIL 365 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~~~fD~Ii 365 (496)
.+.+|||||||+|.++..+++..+ .+|+|+|+|++|++.++++.... ...++.++++|+ +.++. ...++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 577999999999999999988755 68999999999999988765332 246799999998 66552 2257899999
Q ss_pred Eccccc
Q psy11730 366 TSETIY 371 (496)
Q Consensus 366 ~~~~l~ 371 (496)
++.+..
T Consensus 117 ~~~~~p 122 (202)
T PRK00121 117 LNFPDP 122 (202)
T ss_pred EECCCC
Confidence 976543
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.80 E-value=1.8e-08 Score=98.14 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=76.4
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.+.+..+++.+.+.....+.+|||+|||+|.++..++...+ .+++|+|+|+.+++.++.+....+ ..++.++.+|+
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~ 146 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDW 146 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECch
Confidence 45566676766665554567999999999999999998754 689999999999999887654322 34799999998
Q ss_pred CCccccCCCceeEEEEccccccccc
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~ 375 (496)
.+.. ..++||+|++++++.....
T Consensus 147 ~~~~--~~~~fD~Vi~npPy~~~~~ 169 (251)
T TIGR03534 147 FEPL--PGGKFDLIVSNPPYIPEAD 169 (251)
T ss_pred hccC--cCCceeEEEECCCCCchhh
Confidence 7632 2578999999999775543
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.80 E-value=1.9e-08 Score=95.93 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=71.1
Q ss_pred HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
.+...+.+... .++.+|||||||+|.++..+++... .+|+++|+++++++.|+++....+ ..+++++.+|..+.
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccC
Confidence 34444444443 3578999999999999999988754 469999999999999987654332 46899999998765
Q ss_pred cccCCCceeEEEEcccccccc
Q psy11730 354 SAVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 354 ~~~~~~~fD~Ii~~~~l~~~~ 374 (496)
... ...||+|++..+..++.
T Consensus 141 ~~~-~~~fD~Ii~~~~~~~~~ 160 (215)
T TIGR00080 141 WEP-LAPYDRIYVTAAGPKIP 160 (215)
T ss_pred Ccc-cCCCCEEEEcCCccccc
Confidence 432 46899999988766653
No 85
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.79 E-value=2.7e-08 Score=92.76 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=67.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
++.+|||||||+|.+++.+++.++ .+|+++|+|+.+++.++++....+ ..+++++.+|.... ..++||+|++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~~---~~~~~D~v~~~ 104 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPIE---LPGKADAIFIG 104 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchhh---cCcCCCEEEEC
Confidence 578999999999999999988765 689999999999999886653332 35688888887431 14689999998
Q ss_pred cccccccchHhHhhe--eeecCCC
Q psy11730 368 ETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
....++ ..+++. ..|.|++
T Consensus 105 ~~~~~~---~~~l~~~~~~Lk~gG 125 (187)
T PRK08287 105 GSGGNL---TAIIDWSLAHLHPGG 125 (187)
T ss_pred CCccCH---HHHHHHHHHhcCCCe
Confidence 765544 334432 1455554
No 86
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.78 E-value=1.7e-08 Score=102.67 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
..+|||||||+|.++..+++.++ .+|+++|+|+.|++.++.+...++ -..+++.+|..+.. .+.||+|++++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~~---~~~fDlIvsNP 269 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSDI---KGRFDMIISNP 269 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEccccccc---CCCccEEEECC
Confidence 45899999999999999998876 689999999999999887654322 13466777765422 57899999999
Q ss_pred ccccc-----cchHhHhhe--eeecCCCC
Q psy11730 369 TIYSV-----ANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 369 ~l~~~-----~~~~~~~~~--~~l~p~~~ 390 (496)
++|.. ...+.+++. ..|.|+|.
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~ 298 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGE 298 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCE
Confidence 99863 334556554 25667664
No 87
>PHA03411 putative methyltransferase; Provisional
Probab=98.78 E-value=1.5e-08 Score=98.58 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=63.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.++++. .++.++++|+.+... ...||+|+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~--~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES--NEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc--cCCCcEEEEc
Confidence 35699999999999999987764 479999999999999987642 368899999987653 4689999999
Q ss_pred ccccccc
Q psy11730 368 ETIYSVA 374 (496)
Q Consensus 368 ~~l~~~~ 374 (496)
+++++..
T Consensus 134 PPF~~l~ 140 (279)
T PHA03411 134 PPFGKIN 140 (279)
T ss_pred CCccccC
Confidence 9999863
No 88
>PRK06922 hypothetical protein; Provisional
Probab=98.78 E-value=1.3e-08 Score=109.24 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~ 366 (496)
++.+|||||||+|..+..+++..+ .+|+|+|+|+.|++.|+++... ...++.++.+|..+++. ..+++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~----~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN----EGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----cCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999988887654 7999999999999998865422 12467888999887652 23578999999
Q ss_pred cccccccc-------------chHhHhhee--eecCCCC
Q psy11730 367 SETIYSVA-------------NYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~-------------~~~~~~~~~--~l~p~~~ 390 (496)
+.++|++. +...+++.. .|.|+|.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence 99998752 345556552 5666653
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=98.78 E-value=3.2e-08 Score=91.83 Aligned_cols=94 Identities=24% Similarity=0.223 Sum_probs=71.4
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
..++..+++.+.. .++++|||+|||+|.++..++.. ..+|+|+|+|+++++.++++....+. ...++.++++|+.
T Consensus 9 ~~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~ 83 (188)
T PRK14968 9 AEDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLF 83 (188)
T ss_pred chhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEecccc
Confidence 6667777777754 36789999999999999999888 57899999999999998765433221 1222888888876
Q ss_pred CccccCCCceeEEEEcccccc
Q psy11730 352 SLSAVIHSKFDIILTSETIYS 372 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l~~ 372 (496)
+... ...||+|++++++..
T Consensus 84 ~~~~--~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 84 EPFR--GDKFDVILFNPPYLP 102 (188)
T ss_pred cccc--ccCceEEEECCCcCC
Confidence 5432 458999999988765
No 90
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.77 E-value=3.6e-08 Score=93.96 Aligned_cols=96 Identities=23% Similarity=0.285 Sum_probs=79.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||+|||+|.++..+++.++ .+++|+|+++.+++.++++.. ...++++..+|+.+.+.. .+.||+|+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~-~~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEALPFE-DNSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcCCCC-CCcEEEEE
Confidence 3678999999999999999998877 489999999999998876542 245788999998887643 57899999
Q ss_pred EccccccccchHhHhhee--eecCCC
Q psy11730 366 TSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
+...+++..++..+++.+ .|.|++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~~gG 137 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLKPGG 137 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcCCCc
Confidence 999999999999888763 555654
No 91
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.76 E-value=2.1e-08 Score=107.14 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~ 366 (496)
.++++|||||||+|.++..+++.+ .+|+|+|+|+.|++.++..+ ....++.++.+|+..... .+.++||+|++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-----GHYKNVKFMCADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-----ccCCceEEEEecccccccCCCCCCEEEEeh
Confidence 356799999999999999998874 58999999999998765422 124678999999864322 22578999999
Q ss_pred ccccccccc--hHhHhhee--eecCCC
Q psy11730 367 SETIYSVAN--YNKLLTVW--CLFPTH 389 (496)
Q Consensus 367 ~~~l~~~~~--~~~~~~~~--~l~p~~ 389 (496)
+.+++|+++ ...+++++ .|.|++
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG 136 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGG 136 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCe
Confidence 999999976 45666653 455655
No 92
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.76 E-value=1.6e-08 Score=96.82 Aligned_cols=98 Identities=29% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++..... ..++++...++.+.+....+.||+|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 4578999999999999999888765 69999999999998876543211 2268888888887665334789999999
Q ss_pred cccccccchHhHhhee--eecCCC
Q psy11730 368 ETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
.++++..++..+++.. .+.|++
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG 143 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGG 143 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCc
Confidence 9999999999988763 455554
No 93
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.76 E-value=1.9e-08 Score=96.99 Aligned_cols=106 Identities=26% Similarity=0.332 Sum_probs=81.4
Q ss_pred HHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 279 LNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 279 ~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
++++.... ..++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++++.... ..++++...++.+.+...
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence 45555554 4568899999999999999988875 57999999999999887654322 125778888887765333
Q ss_pred CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
.+.||+|++..++++..++..+++.. .+.|++
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG 145 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGG 145 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCc
Confidence 57899999999999999998887763 455554
No 94
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=1.8e-08 Score=95.73 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHc----cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN----GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~----~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
.+.+|||+|||+|.+++.+++. ....|+|+|+++.+++.|+++. .++.++.+|+..... +++||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~--~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF--DTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc--cCCccEE
Confidence 4679999999999999998875 2358999999999999998642 357889999876543 5789999
Q ss_pred EEcccccccc
Q psy11730 365 LTSETIYSVA 374 (496)
Q Consensus 365 i~~~~l~~~~ 374 (496)
|+|+++.-..
T Consensus 119 IsNPPY~~~~ 128 (241)
T PHA03412 119 ISNPPFGKIK 128 (241)
T ss_pred EECCCCCCcc
Confidence 9999998653
No 95
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.74 E-value=2.3e-08 Score=98.39 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=72.3
Q ss_pred CCCeEEEecCcCCH----HHHHHHHccC------CeEEEEeCCHHHHHHhcCccccc----c------------------
Q psy11730 289 DKLSVLDVGCGAGL----LGLYTLMNGA------AHVSFQDYNQEVIESLTLPNILM----N------------------ 336 (496)
Q Consensus 289 ~~~~VLDlGcGtG~----~~~~la~~~~------~~v~giD~s~~~i~~a~~~~~~~----~------------------ 336 (496)
.+.+|+|+|||||. +++.+++.+. .+|+|+|+|+.|++.|++..-.. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35699999999996 5555555432 47999999999999998753110 0
Q ss_pred --cCCCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730 337 --TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH 389 (496)
Q Consensus 337 --~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~ 389 (496)
.....+|+|..+|+.+.+.. .++||+|+|..+++|+++. ..+++.. .|.|+|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~-~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP-LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc-cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 00124789999999886543 6789999999999999643 4566653 566665
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.73 E-value=3.4e-08 Score=98.18 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+++....+ ...+++++.+|+.+... ...||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~~--~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAALP--GRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccC--CCCccEEEEC
Confidence 357899999999999999998765 689999999999999987754332 23579999999754321 4579999999
Q ss_pred cccccc
Q psy11730 368 ETIYSV 373 (496)
Q Consensus 368 ~~l~~~ 373 (496)
+++...
T Consensus 197 PPy~~~ 202 (284)
T TIGR03533 197 PPYVDA 202 (284)
T ss_pred CCCCCc
Confidence 986543
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.72 E-value=1.8e-08 Score=94.63 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--cCCCceeEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA--VIHSKFDIIL 365 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Ii 365 (496)
.+.+|||||||+|.++..+++..+ ..|+|+|+++.|++.|+++.... ...|++++++|+.++.. ...+.+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 456999999999999999998776 68999999999999988765333 24589999999987542 2246899999
Q ss_pred Eccccccc
Q psy11730 366 TSETIYSV 373 (496)
Q Consensus 366 ~~~~l~~~ 373 (496)
++.+..+.
T Consensus 93 ~~~pdpw~ 100 (194)
T TIGR00091 93 LNFPDPWP 100 (194)
T ss_pred EECCCcCC
Confidence 98775544
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=3.4e-08 Score=99.21 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=63.9
Q ss_pred CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET 369 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~ 369 (496)
.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+++....+ ...+++++++|+.+... ..+||+|+++++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 6899999999999999998765 789999999999999988764432 23579999999765322 458999999998
Q ss_pred cccc
Q psy11730 370 IYSV 373 (496)
Q Consensus 370 l~~~ 373 (496)
+.-.
T Consensus 211 yi~~ 214 (307)
T PRK11805 211 YVDA 214 (307)
T ss_pred CCCc
Confidence 7543
No 99
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.71 E-value=6.2e-08 Score=92.50 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---------cCCCCceEEEe
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---------TDNLEKCKFYH 347 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---------~~~~~~v~~~~ 347 (496)
.|.+++......++.+|||+|||.|..+++||++|. +|+|||+|+.+++.+...+.... .....+|++.+
T Consensus 25 ~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 25 LLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 455555432233577999999999999999999876 69999999999998643221110 11246789999
Q ss_pred cccCCccccCCCceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730 348 GDWGSLSAVIHSKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH 389 (496)
Q Consensus 348 ~d~~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~ 389 (496)
+|+.++.......||.|+-..++++++. .+.+++.. .|.|++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 9999886543468999999888888842 22333331 455655
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.70 E-value=4.6e-08 Score=97.40 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=72.3
Q ss_pred cchHHHHHHHHhCC-CCCC-CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 273 ECTFDLLNFIKDNV-AVDK-LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 273 ~~~~~l~~~l~~~~-~~~~-~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
+....+++.+.... ...+ .+|||+|||+|.+++.++...+ .+|+|+|+|+++++.|+++....+ ...+++|+.+|
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECc
Confidence 44455555554332 2222 6899999999999999998766 689999999999999988754332 22459999999
Q ss_pred cCCccccCCCceeEEEEccccccccc
Q psy11730 350 WGSLSAVIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~ 375 (496)
+.+... ..+||+|++++++....+
T Consensus 174 ~~~~~~--~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 174 LFEPLA--GQKIDIIVSNPPYIDEED 197 (284)
T ss_pred hhccCc--CCCccEEEECCCCCCcch
Confidence 876321 348999999999765543
No 101
>PLN02672 methionine S-methyltransferase
Probab=98.70 E-value=4.5e-08 Score=111.39 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=82.0
Q ss_pred ecchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccccc-----------
Q psy11730 272 WECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNT----------- 337 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~----------- 337 (496)
-+.+..+++.|..... +++.+|||||||+|.+++.+++... .+|+|+|+|+++++.|+++...++.
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 5777888887544321 3467999999999999999998765 7999999999999999887654321
Q ss_pred --CCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhh
Q psy11730 338 --DNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 338 --~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
....+++|+++|+.+........||+|+||+++-...+.+.+-+
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~ 224 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSK 224 (1082)
T ss_pred cccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcCh
Confidence 12357999999987654321237999999999877666554433
No 102
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.70 E-value=4.3e-08 Score=96.92 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
..+++.+.+...+ ++.+|||||||+|.++..+++.+. +|+|+|+++.|++.++++.. ..+++++++|+.+++
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCC
Confidence 3455666665543 578999999999999999999876 89999999999999876431 258999999999876
Q ss_pred ccCCCceeEEEEccccccc
Q psy11730 355 AVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~ 373 (496)
.. +-.+|.|+++.+++..
T Consensus 101 ~~-~~~~~~vv~NlPY~is 118 (272)
T PRK00274 101 LS-ELQPLKVVANLPYNIT 118 (272)
T ss_pred HH-HcCcceEEEeCCccch
Confidence 42 1126999999986554
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.69 E-value=9.8e-08 Score=90.81 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=70.4
Q ss_pred hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
...+...+.....+ ++.+|||+|||+|.++..+++.+ .+|+++|+++++++.++++.... ...++++..+|..+.
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKG 138 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccC
Confidence 33444555554443 57899999999999999888775 58999999999999988765433 245689999997653
Q ss_pred cccCCCceeEEEEccccccc
Q psy11730 354 SAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 354 ~~~~~~~fD~Ii~~~~l~~~ 373 (496)
... .+.||+|++..++.++
T Consensus 139 ~~~-~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 139 WPA-YAPFDRILVTAAAPEI 157 (212)
T ss_pred CCc-CCCcCEEEEccCchhh
Confidence 221 4789999998877766
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.68 E-value=4.5e-08 Score=95.62 Aligned_cols=87 Identities=24% Similarity=0.278 Sum_probs=63.0
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
++....+++.+... ..++.+|||+|||+|.+++.+++.|..+|+|+|+|+.|++.|+++...++. ...+.+..+
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--- 176 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--- 176 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC---
Confidence 55556666676654 346889999999999999998888888899999999999998876543321 122332222
Q ss_pred CccccCCCceeEEEEcccc
Q psy11730 352 SLSAVIHSKFDIILTSETI 370 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l 370 (496)
+.+||+|+++...
T Consensus 177 ------~~~fD~Vvani~~ 189 (250)
T PRK00517 177 ------DLKADVIVANILA 189 (250)
T ss_pred ------CCCcCEEEEcCcH
Confidence 2279999997553
No 105
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.67 E-value=4.4e-09 Score=97.60 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=77.9
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
|.-...|.+.|.....-.=+++||||||||..+..+ +.-..+++|+|+|..|+++|.++..... ..+++..
T Consensus 108 Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~YD~--------L~~Aea~ 178 (287)
T COG4976 108 YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGLYDT--------LYVAEAV 178 (287)
T ss_pred CccHHHHHHHHHhccCCccceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccchHH--------HHHHHHH
Confidence 334556666666654333579999999999999995 4445689999999999999998764332 1334433
Q ss_pred Cccc-cCCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730 352 SLSA-VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 352 ~~~~-~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
.+.. ..++.||+|++.+++.++.+++.++.. -.|.|++
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG 219 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG 219 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc
Confidence 3322 115789999999999999999998864 2455554
No 106
>KOG1541|consensus
Probab=98.66 E-value=4.4e-08 Score=90.55 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
...-|||||||||..+..+...| ..++|+|+|+.|++.|..+-.+ -.++.+|+.+-.....+.||.+|+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e--------gdlil~DMG~GlpfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE--------GDLILCDMGEGLPFRPGTFDGVISIS 120 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh--------cCeeeeecCCCCCCCCCccceEEEee
Confidence 45689999999999999988888 7899999999999998865432 24688888865544579999999998
Q ss_pred ccccc
Q psy11730 369 TIYSV 373 (496)
Q Consensus 369 ~l~~~ 373 (496)
+++++
T Consensus 121 AvQWL 125 (270)
T KOG1541|consen 121 AVQWL 125 (270)
T ss_pred eeeee
Confidence 88776
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.66 E-value=6.3e-08 Score=94.53 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=69.2
Q ss_pred cchHHHHHHHHhCCC-C-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 273 ECTFDLLNFIKDNVA-V-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 273 ~~~~~l~~~l~~~~~-~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
+.+..|++.+..... . .+.+|||+|||+|.+++.++.... .+|+|+|+|+.+++.++++...+ +++++.+|
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D 141 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGD 141 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEee
Confidence 445666666655432 1 245899999999999999987644 68999999999999988765322 24788899
Q ss_pred cCCccc-cCCCceeEEEEccccccc
Q psy11730 350 WGSLSA-VIHSKFDIILTSETIYSV 373 (496)
Q Consensus 350 ~~~~~~-~~~~~fD~Ii~~~~l~~~ 373 (496)
+.+... ...+.||+|++++++...
T Consensus 142 ~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 142 LYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred chhhcchhcCCCEeEEEECCCCCCc
Confidence 865332 113579999999997643
No 108
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.65 E-value=9.2e-08 Score=93.88 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=71.1
Q ss_pred hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
...+++.+.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++... ..+++++++|+.++
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~ 87 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV 87 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence 34556666665543 57899999999999999999884 5899999999999998865421 45899999999887
Q ss_pred cccCCCceeEEEEcccccc
Q psy11730 354 SAVIHSKFDIILTSETIYS 372 (496)
Q Consensus 354 ~~~~~~~fD~Ii~~~~l~~ 372 (496)
+. ..||.|+++.+++.
T Consensus 88 ~~---~~~d~Vv~NlPy~i 103 (258)
T PRK14896 88 DL---PEFNKVVSNLPYQI 103 (258)
T ss_pred Cc---hhceEEEEcCCccc
Confidence 63 35899999999764
No 109
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.65 E-value=1e-07 Score=89.80 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||+|||+|.+++.++.. +. .+|+++|+++.|++.++++....+ ...++.++.+|+.+......+.||.|+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46889999999999999998764 33 689999999999999887654322 246789999998765433346899999
Q ss_pred EccccccccchHhHhhee--eecCCC
Q psy11730 366 TSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
+... ..++..+++.. .|.|++
T Consensus 117 ~~~~---~~~~~~~l~~~~~~LkpgG 139 (198)
T PRK00377 117 IGGG---SEKLKEIISASWEIIKKGG 139 (198)
T ss_pred ECCC---cccHHHHHHHHHHHcCCCc
Confidence 9642 23445555542 455655
No 110
>PLN03075 nicotianamine synthase; Provisional
Probab=98.65 E-value=1.1e-07 Score=93.88 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=73.8
Q ss_pred CCCCeEEEecCcCC-HHHHHHHH-ccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 288 VDKLSVLDVGCGAG-LLGLYTLM-NGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG-~~~~~la~-~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
..+++|+|||||.| ..++.+++ ..+ .+++|+|.++++++.|++.... ..+...+++|..+|+.+.... .+.||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da~~~~~~-l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADVMDVTES-LKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECchhhcccc-cCCcCEE
Confidence 37889999999966 44554443 444 6899999999999999876532 123456899999998876432 4789999
Q ss_pred EEccccccc--cchHhHhhee--eecCCC
Q psy11730 365 LTSETIYSV--ANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 365 i~~~~l~~~--~~~~~~~~~~--~l~p~~ 389 (496)
++. +++++ +++..+++.. .+.|++
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG 227 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGA 227 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCc
Confidence 999 87777 7888888763 566655
No 111
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.64 E-value=5.8e-08 Score=102.72 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
..|++.+.+...+ ++.+|||+|||+|.+++.+++.+ .+|+|+|+|++|++.|+++...++ ..+++|+.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l 358 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhh
Confidence 3455666555543 46799999999999999988876 689999999999999987654332 457999999987643
Q ss_pred c---cCCCceeEEEEccccccc
Q psy11730 355 A---VIHSKFDIILTSETIYSV 373 (496)
Q Consensus 355 ~---~~~~~fD~Ii~~~~l~~~ 373 (496)
. ...++||+|+++++..-.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcCh
Confidence 1 113579999999987643
No 112
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=1.2e-07 Score=93.76 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=74.6
Q ss_pred ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
.+....+++.+..... .++.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.++++.. .....++.++.+|
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---~~~~~~i~~~~~d 166 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---HGLGARVEFLQGD 166 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hCCCCcEEEEEcc
Confidence 4455666676664433 3567999999999999999998764 789999999999999887653 1234689999999
Q ss_pred cCCccccCCCceeEEEEcccccccc
Q psy11730 350 WGSLSAVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 350 ~~~~~~~~~~~fD~Ii~~~~l~~~~ 374 (496)
+.+... .++||+|++++++....
T Consensus 167 ~~~~~~--~~~fD~Iv~npPy~~~~ 189 (275)
T PRK09328 167 WFEPLP--GGRFDLIVSNPPYIPEA 189 (275)
T ss_pred ccCcCC--CCceeEEEECCCcCCcc
Confidence 855332 47899999999975543
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.64 E-value=7.3e-08 Score=103.24 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=63.8
Q ss_pred CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.+|||||||+|.+++.++... ..+|+|+|+|+.+++.|+++....+ ...++.++.+|+.+... .++||+|+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~~--~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENIE--KQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhCc--CCCccEEEECC
Confidence 4689999999999999988764 4799999999999999987754332 23578999999754321 46899999999
Q ss_pred cccccc
Q psy11730 369 TIYSVA 374 (496)
Q Consensus 369 ~l~~~~ 374 (496)
++....
T Consensus 215 PYi~~~ 220 (506)
T PRK01544 215 PYISHS 220 (506)
T ss_pred CCCCch
Confidence 876543
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.60 E-value=1.2e-07 Score=96.98 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCCCceeEE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIHSKFDII 364 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~I 364 (496)
+..+..+||||||+|.+++.+|+..+ ..++|+|+++.|++.+.++.... ...|+.++++|+..+. ...++++|.|
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34577999999999999999999876 68999999999999988776443 3578999999987642 2236899999
Q ss_pred EEccccccc
Q psy11730 365 LTSETIYSV 373 (496)
Q Consensus 365 i~~~~l~~~ 373 (496)
+++.+..+.
T Consensus 197 ~lnFPdPW~ 205 (390)
T PRK14121 197 FVHFPVPWD 205 (390)
T ss_pred EEeCCCCcc
Confidence 998776654
No 115
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.60 E-value=1.7e-07 Score=88.99 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=62.5
Q ss_pred hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
.+.+.+....... .++.+|||||||+|.++..+++... .+|+|||+++ |. ...++.++++|+.
T Consensus 36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~ 101 (209)
T PRK11188 36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFR 101 (209)
T ss_pred HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCC
Confidence 4445555554432 3477999999999999999888753 6899999998 21 1346899999998
Q ss_pred Ccc-------ccCCCceeEEEEcccccccc
Q psy11730 352 SLS-------AVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 352 ~~~-------~~~~~~fD~Ii~~~~l~~~~ 374 (496)
+.. ....++||+|+|+.+.++..
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence 853 12257899999987666653
No 116
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.58 E-value=7.9e-08 Score=99.36 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
..+.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++...++ ..+++|+.+|+.+.......+||+|+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 457899999999999999988766 689999999999999987654432 3589999999877543223569999999
Q ss_pred cccc
Q psy11730 368 ETIY 371 (496)
Q Consensus 368 ~~l~ 371 (496)
++..
T Consensus 308 PPr~ 311 (374)
T TIGR02085 308 PPRR 311 (374)
T ss_pred CCCC
Confidence 9964
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.57 E-value=1.9e-07 Score=76.30 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=69.4
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~ 371 (496)
+|+|+|||+|.++..++.....+++++|+++.++..+++... .....++.++..|+.+......+.||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA---ALLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHh---cccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 589999999999999888566899999999999988773211 12356789999998876642257899999999999
Q ss_pred c-ccchHhHhhe
Q psy11730 372 S-VANYNKLLTV 382 (496)
Q Consensus 372 ~-~~~~~~~~~~ 382 (496)
+ ......+++.
T Consensus 78 ~~~~~~~~~l~~ 89 (107)
T cd02440 78 HLVEDLARFLEE 89 (107)
T ss_pred ehhhHHHHHHHH
Confidence 9 6666666665
No 118
>KOG1271|consensus
Probab=98.56 E-value=1.3e-07 Score=84.90 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=70.9
Q ss_pred hHHHHHHHHhCCC---C-CC-CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec
Q psy11730 275 TFDLLNFIKDNVA---V-DK-LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG 348 (496)
Q Consensus 275 ~~~l~~~l~~~~~---~-~~-~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~ 348 (496)
...++.|+.+.+. + +. .+|||||||.|.+...|++.+. ...+|+|+|+++++.|+..+... +....|+|.+.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q~ 125 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEEe
Confidence 3467888887765 2 23 3999999999999999999988 45999999999999977554322 23344999999
Q ss_pred ccCCccccCCCceeEEEEcccc
Q psy11730 349 DWGSLSAVIHSKFDIILTSETI 370 (496)
Q Consensus 349 d~~~~~~~~~~~fD~Ii~~~~l 370 (496)
|+.+.... .++||+|+--.++
T Consensus 126 DI~~~~~~-~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 126 DITDPDFL-SGQFDLVLDKGTL 146 (227)
T ss_pred eccCCccc-ccceeEEeecCce
Confidence 98876443 6889999865554
No 119
>KOG3420|consensus
Probab=98.56 E-value=1.1e-07 Score=82.33 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=74.5
Q ss_pred HHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 277 DLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 277 ~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.++..|-+-. ++.|++++|||||.|.++..++-.++..|+|+|+.+++++.+.+++... .-++.++++|+.++..
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~ 110 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLEL 110 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhc
Confidence 4455555544 5899999999999999998877788899999999999999998876432 3467899999988776
Q ss_pred cCCCceeEEEEccccccc
Q psy11730 356 VIHSKFDIILTSETIYSV 373 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~~ 373 (496)
. .+.||.++.++++-.-
T Consensus 111 ~-~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 111 K-GGIFDTAVINPPFGTK 127 (185)
T ss_pred c-CCeEeeEEecCCCCcc
Confidence 5 4889999999987543
No 120
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.55 E-value=1.9e-07 Score=89.30 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=70.6
Q ss_pred ecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHH-hcCcccccccCCCCceEEEecc
Q psy11730 272 WECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES-LTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~-a~~~~~~~~~~~~~~v~~~~~d 349 (496)
...+..|...+.... ..+++.|||+|||||.++..+++.|+++|+|+|+++.|+.. ++.+. ........|++ ..+
T Consensus 57 sr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-~v~~~~~~ni~--~~~ 133 (228)
T TIGR00478 57 SRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-RVKVLERTNIR--YVT 133 (228)
T ss_pred hhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-CeeEeecCCcc--cCC
Confidence 455667777777654 46788999999999999999999999999999999988775 33322 11001122333 334
Q ss_pred cCCccccCCCceeEEEEccccccccchHhHhh
Q psy11730 350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
++++... -..+|+++++..+ -+++...+++
T Consensus 134 ~~~~~~d-~~~~DvsfiS~~~-~l~~i~~~l~ 163 (228)
T TIGR00478 134 PADIFPD-FATFDVSFISLIS-ILPELDLLLN 163 (228)
T ss_pred HhHcCCC-ceeeeEEEeehHh-HHHHHHHHhC
Confidence 4444321 2478988887665 3566666665
No 121
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.55 E-value=2.7e-07 Score=86.68 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=67.5
Q ss_pred HHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730 281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH 358 (496)
Q Consensus 281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 358 (496)
.+...... ++.+|||+|||+|.+++.+++... .+|+++|+|++|++.++++....+ ..+++++.+|+.+......
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhCC
Confidence 34444443 578999999999999999887644 799999999999999887653322 3578999998865322112
Q ss_pred CceeEEEEccccccccchHhHhhe-e-eecCCC
Q psy11730 359 SKFDIILTSETIYSVANYNKLLTV-W-CLFPTH 389 (496)
Q Consensus 359 ~~fD~Ii~~~~l~~~~~~~~~~~~-~-~l~p~~ 389 (496)
..+|.|+.... .+.+.+++. + .|.|++
T Consensus 108 ~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 108 PAPDRVCIEGG----RPIKEILQAVWQYLKPGG 136 (196)
T ss_pred CCCCEEEEECC----cCHHHHHHHHHHhcCCCe
Confidence 34677665322 233444444 1 455554
No 122
>PRK04266 fibrillarin; Provisional
Probab=98.54 E-value=4.6e-07 Score=86.90 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=65.2
Q ss_pred ceeeecchH-HHHHHHHh---CCCC-CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730 268 GYKIWECTF-DLLNFIKD---NVAV-DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLE 341 (496)
Q Consensus 268 ~~~~~~~~~-~l~~~l~~---~~~~-~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~ 341 (496)
+|.+|.... .+...|.. ...+ ++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.++... ..
T Consensus 46 ~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~ 120 (226)
T PRK04266 46 EYREWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RK 120 (226)
T ss_pred EEEEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cC
Confidence 455554422 33333333 3443 47799999999999999998865 36899999999999876544321 25
Q ss_pred ceEEEecccCCcc--ccCCCceeEEEEcc
Q psy11730 342 KCKFYHGDWGSLS--AVIHSKFDIILTSE 368 (496)
Q Consensus 342 ~v~~~~~d~~~~~--~~~~~~fD~Ii~~~ 368 (496)
|+.++.+|..+.. ....+.||+|++..
T Consensus 121 nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 121 NIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CcEEEECCCCCcchhhhccccCCEEEECC
Confidence 7888999986521 11135699999753
No 123
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=1.1e-07 Score=105.79 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
++++|||||||+|.+++.+++.|+.+|+++|+|+.+++.++++...++ ....+++++++|+.+......++||+|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 578999999999999999998888899999999999999987764443 2225899999998765432256899999998
Q ss_pred ccc
Q psy11730 369 TIY 371 (496)
Q Consensus 369 ~l~ 371 (496)
+..
T Consensus 617 P~f 619 (702)
T PRK11783 617 PTF 619 (702)
T ss_pred CCC
Confidence 854
No 124
>KOG3010|consensus
Probab=98.52 E-value=2.8e-07 Score=86.68 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=69.8
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~ 371 (496)
.++|+|||+|..++.++ ..+++|+|+|+|++|++.|++.....- .....++...++.++... +++.|+|++..++|
T Consensus 36 ~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~-e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGG-EESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCC-CcceeeehhhhhHH
Confidence 89999999996666644 447899999999999999887642111 112233333445555443 68999999999999
Q ss_pred cccchHhHhhe--eeecCCCCCcccEEEeecc
Q psy11730 372 SVANYNKLLTV--WCLFPTHTPKDLLKVTSAE 401 (496)
Q Consensus 372 ~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~ 401 (496)
++. .+.+++. +.|.++|+ ++.+....
T Consensus 112 WFd-le~fy~~~~rvLRk~Gg---~iavW~Y~ 139 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRKDGG---LIAVWNYN 139 (261)
T ss_pred hhc-hHHHHHHHHHHcCCCCC---EEEEEEcc
Confidence 994 4555544 47777776 45554444
No 125
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.52 E-value=1.1e-07 Score=88.10 Aligned_cols=101 Identities=28% Similarity=0.355 Sum_probs=70.0
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV- 356 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 356 (496)
+.++|... .+.+.+||||.||||.+++.++.+|+++|++||.++..+...+++....+ ...++.++.+|.......
T Consensus 32 lFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 32 LFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHH
T ss_pred HHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhh
Confidence 45555544 36899999999999999999999999999999999999998887754433 233688899986544322
Q ss_pred --CCCceeEEEEccccccccchHhHhh
Q psy11730 357 --IHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 357 --~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
....||+|++.+|+..-.....++.
T Consensus 109 ~~~~~~fDiIflDPPY~~~~~~~~~l~ 135 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAKGLYYEELLE 135 (183)
T ss_dssp HHCTS-EEEEEE--STTSCHHHHHHHH
T ss_pred cccCCCceEEEECCCcccchHHHHHHH
Confidence 2579999999999877654344443
No 126
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.51 E-value=1.6e-07 Score=87.77 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=68.1
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--C-CceeEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--H-SKFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~fD~I 364 (496)
+.+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.++++....+ ...+++++.+|+.+..... . ..||+|
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCceEE
Confidence 4688999999999999999999999999999999999998876653332 2347899999986542211 2 247888
Q ss_pred EEccccccccchHhHhh
Q psy11730 365 LTSETIYSVANYNKLLT 381 (496)
Q Consensus 365 i~~~~l~~~~~~~~~~~ 381 (496)
+..+++.. ...+.+++
T Consensus 126 ~~DPPy~~-~~~~~~l~ 141 (189)
T TIGR00095 126 YLDPPFFN-GALQALLE 141 (189)
T ss_pred EECcCCCC-CcHHHHHH
Confidence 88888754 33444443
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.51 E-value=3.4e-07 Score=92.19 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
+...+.+...+ ++.+|||||||+|.++..+++... .+|+++|.++++++.|+++.... ...++.++.+|..+..
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhcc
Confidence 33344444433 578999999999999999988654 47999999999999988764332 2457899999976654
Q ss_pred ccCCCceeEEEEccccccc
Q psy11730 355 AVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~ 373 (496)
.. ...||+|++...+..+
T Consensus 145 ~~-~~~fD~Ii~~~g~~~i 162 (322)
T PRK13943 145 PE-FAPYDVIFVTVGVDEV 162 (322)
T ss_pred cc-cCCccEEEECCchHHh
Confidence 33 3679999998766555
No 128
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.51 E-value=2.6e-07 Score=92.10 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
..+++.|.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++.... ....+++++++|+.+..
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhhc
Confidence 3456666665554 57899999999999999988875 57999999999999988664321 12468999999998765
Q ss_pred ccCCCceeEEEEcccccccc
Q psy11730 355 AVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~~ 374 (496)
. ..||+|+++.+++-..
T Consensus 99 ~---~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 99 F---PYFDVCVANVPYQISS 115 (294)
T ss_pred c---cccCEEEecCCcccCc
Confidence 3 4689999998887553
No 129
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.51 E-value=1.4e-07 Score=97.77 Aligned_cols=83 Identities=24% Similarity=0.263 Sum_probs=66.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIIL 365 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii 365 (496)
++++|||+|||+|.+++.++..++.+|+++|+|+.+++.|+++...++ ....+++++.+|+.+.... ..++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 578999999999999998777777899999999999999887654432 2224799999998775421 135899999
Q ss_pred Ecccccc
Q psy11730 366 TSETIYS 372 (496)
Q Consensus 366 ~~~~l~~ 372 (496)
++++...
T Consensus 299 lDPP~f~ 305 (396)
T PRK15128 299 MDPPKFV 305 (396)
T ss_pred ECCCCCC
Confidence 9999643
No 130
>KOG3191|consensus
Probab=98.50 E-value=1.8e-07 Score=84.10 Aligned_cols=137 Identities=20% Similarity=0.187 Sum_probs=96.4
Q ss_pred ccccCceeeecchHHHHHHHHhCCC----CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccc
Q psy11730 263 NVYEGGYKIWECTFDLLNFIKDNVA----VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMN 336 (496)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~ 336 (496)
.+|++ -++++.|++.|+.... ...+.+||||||+|..+.+|++.-. ..+.++|+|+.+++...+.+..
T Consensus 17 dVYEP----aEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-- 90 (209)
T KOG3191|consen 17 DVYEP----AEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-- 90 (209)
T ss_pred hccCc----cchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh--
Confidence 46666 8899999998887642 3367899999999999999987433 6789999999999875544322
Q ss_pred cCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCCCcccEEEeeccCCcccccccchhhHh
Q psy11730 337 TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSII 416 (496)
Q Consensus 337 ~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (496)
+..++..++.|+.+-.. .++.|+++.++++.-.++.+--.. --...+.|+..+++.++.+.+.
T Consensus 91 --n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~-------------~i~~a~aGG~~Gr~v~d~ll~~ 153 (209)
T KOG3191|consen 91 --NRVHIDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDE-------------GIASAWAGGKDGREVTDRLLPQ 153 (209)
T ss_pred --cCCccceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhH-------------HHHHHHhcCcchHHHHHHHHhh
Confidence 24557888888776554 489999999999766544322111 0112345667777777777666
Q ss_pred cCCCCC
Q psy11730 417 YPRTQL 422 (496)
Q Consensus 417 ~~~~~~ 422 (496)
.+...+
T Consensus 154 v~~iLS 159 (209)
T KOG3191|consen 154 VPDILS 159 (209)
T ss_pred hhhhcC
Confidence 665443
No 131
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.46 E-value=3.7e-07 Score=91.62 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=60.9
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCccc---cCCCceeE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSA---VIHSKFDI 363 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~---~~~~~fD~ 363 (496)
.+.+|||||||+|.+...++.. ...+++|+|+++.+++.|+++...+ .....++.+.. .+...+.. ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-PGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 3569999999999887777654 4478999999999999999765433 12345677754 33322221 12568999
Q ss_pred EEEccccccccc
Q psy11730 364 ILTSETIYSVAN 375 (496)
Q Consensus 364 Ii~~~~l~~~~~ 375 (496)
|+|+++++.-..
T Consensus 193 ivcNPPf~~s~~ 204 (321)
T PRK11727 193 TLCNPPFHASAA 204 (321)
T ss_pred EEeCCCCcCcch
Confidence 999999876543
No 132
>KOG2904|consensus
Probab=98.46 E-value=5.3e-07 Score=86.10 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC----ccccCCCce
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS----LSAVIHSKF 361 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~f 361 (496)
...+..+||+|||+|.+++.++.. +...|+|||.|+.++..|.++..... ....+.+++.+++. ....+.+.+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCce
Confidence 356779999999999999999764 44889999999999999888765443 45567777554443 222235899
Q ss_pred eEEEEccccccccchHhHhh
Q psy11730 362 DIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 362 D~Ii~~~~l~~~~~~~~~~~ 381 (496)
|+++||+++-.-.|.+.+-.
T Consensus 224 dllvsNPPYI~~dD~~~l~~ 243 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKP 243 (328)
T ss_pred eEEecCCCcccccchhhcCc
Confidence 99999999988777544433
No 133
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.46 E-value=3.8e-07 Score=92.77 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.++..+.+.... ++..|||+|||+|.+++.++..+ .+|+|+|+++.|+..++.+....+ ..++.+..+|+.+++.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCc
Confidence 344444443333 47799999999999999866654 689999999999998877653332 3448899999998765
Q ss_pred cCCCceeEEEEcccccc
Q psy11730 356 VIHSKFDIILTSETIYS 372 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~ 372 (496)
. .+.||+|++++|+..
T Consensus 245 ~-~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 245 S-SESVDAIATDPPYGR 260 (329)
T ss_pred c-cCCCCEEEECCCCcC
Confidence 4 578999999988643
No 134
>PRK04457 spermidine synthase; Provisional
Probab=98.45 E-value=7e-07 Score=87.76 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=61.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+++|||||||+|.++..+++..+ .+|+++|+++++++.|++..... ....+++++.+|..+......++||+|+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 467999999999999999887655 78999999999999998764221 124689999999876543334689999985
No 135
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7.4e-07 Score=83.08 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=74.2
Q ss_pred ecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
+...-.+...+.+.. ..++.+|||||||+|+.+-.|++... +|+.+|..++..+.|+++.... ...||.+.++|.
T Consensus 54 tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG 129 (209)
T COG2518 54 TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETL---GYENVTVRHGDG 129 (209)
T ss_pred eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCc
Confidence 334444444444444 44588999999999999999998776 8999999999999999876443 356799999997
Q ss_pred CCccccCCCceeEEEEcccccccc
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~ 374 (496)
..-... ...||.|+.......++
T Consensus 130 ~~G~~~-~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 130 SKGWPE-EAPYDRIIVTAAAPEVP 152 (209)
T ss_pred ccCCCC-CCCcCEEEEeeccCCCC
Confidence 654332 57899999988776653
No 136
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.5e-07 Score=95.48 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.|.++..+.... ++.+|||+.||.|.+++.|| ....+|+|+|+++++++.|++++..++ ..|++|..++.+++..
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence 456666666655 45789999999999999988 445789999999999999988765544 6679999999998876
Q ss_pred cCC--CceeEEEEccc
Q psy11730 356 VIH--SKFDIILTSET 369 (496)
Q Consensus 356 ~~~--~~fD~Ii~~~~ 369 (496)
... ..+|+|+.+++
T Consensus 356 ~~~~~~~~d~VvvDPP 371 (432)
T COG2265 356 AWWEGYKPDVVVVDPP 371 (432)
T ss_pred hccccCCCCEEEECCC
Confidence 532 47899999887
No 137
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.44 E-value=3.7e-07 Score=96.32 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 277 DLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 277 ~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.|.+.+.+...+. +.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|+++...++ ..+++|+.+|+.+...
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence 3455555555444 5799999999999999988764 689999999999999987653332 4689999999876422
Q ss_pred c---CCCceeEEEEcccc
Q psy11730 356 V---IHSKFDIILTSETI 370 (496)
Q Consensus 356 ~---~~~~fD~Ii~~~~l 370 (496)
. ....||+|+++++-
T Consensus 355 ~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred HHHhcCCCCCEEEECcCC
Confidence 1 13579999998884
No 138
>KOG2920|consensus
Probab=98.43 E-value=2.4e-07 Score=89.53 Aligned_cols=127 Identities=43% Similarity=0.803 Sum_probs=93.8
Q ss_pred cceeecccccCCCccccCceeeecchHHHHHHHHhCC----CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHH
Q psy11730 250 ETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV----AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVI 325 (496)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i 325 (496)
+....+...++...+|++|+++|+++..|+..+.+.+ ...+++|||+|||.|..++.+...+...+.+.|+|.+.+
T Consensus 73 ~~i~~~~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 73 EEIILLNHSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred chhhcccccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 3334557888999999999999999999999999664 367999999999999999999999989999999999998
Q ss_pred HHhcCcccccccC-------CCCceEEEec---ccCCccccCCC--ceeEEEEccccccccchHhH
Q psy11730 326 ESLTLPNILMNTD-------NLEKCKFYHG---DWGSLSAVIHS--KFDIILTSETIYSVANYNKL 379 (496)
Q Consensus 326 ~~a~~~~~~~~~~-------~~~~v~~~~~---d~~~~~~~~~~--~fD~Ii~~~~l~~~~~~~~~ 379 (496)
..-...+...+.. ...-..+.+. |+. ....+ .||+|.++.++|...+.+.+
T Consensus 153 ~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~---~~~t~~~~ydlIlsSetiy~~~~~~~~ 215 (282)
T KOG2920|consen 153 RLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGV---FNHTERTHYDLILSSETIYSIDSLAVL 215 (282)
T ss_pred eeecccceecchhhhhhhhhcccceeccccccccch---hhhccccchhhhhhhhhhhCcchhhhh
Confidence 5444433332210 0011122222 331 11123 89999999999999888777
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.43 E-value=5.7e-07 Score=85.12 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
.+...+.+...+ ++.+|||||||+|+.+-.++.... ..|+++|..+.+++.|+++.... ...|+.+.++|....
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhc
Confidence 343444444434 588999999999999999998644 46999999999999998775433 356999999997654
Q ss_pred cccCCCceeEEEEccccccccchHhHhh
Q psy11730 354 SAVIHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
... ...||.|++......+ ++.+++
T Consensus 136 ~~~-~apfD~I~v~~a~~~i--p~~l~~ 160 (209)
T PF01135_consen 136 WPE-EAPFDRIIVTAAVPEI--PEALLE 160 (209)
T ss_dssp TGG-G-SEEEEEESSBBSS----HHHHH
T ss_pred ccc-CCCcCEEEEeeccchH--HHHHHH
Confidence 332 5789999999888654 344555
No 140
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.42 E-value=7.6e-07 Score=81.27 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 286 VAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 286 ~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
...++..++|||||||..++.++..++ .+|++||-++++++..+++.... ..+|+.++.+++.+..... ..||.|
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~~~-~~~dai 106 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALPDL-PSPDAI 106 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhcCC-CCCCEE
Confidence 345688999999999999999998777 79999999999999888765443 3889999999988776532 389999
Q ss_pred EEccccccccchHhHhhe-e-eecCCC
Q psy11730 365 LTSETIYSVANYNKLLTV-W-CLFPTH 389 (496)
Q Consensus 365 i~~~~l~~~~~~~~~~~~-~-~l~p~~ 389 (496)
+.... .+.+.+++. | .|.|++
T Consensus 107 FIGGg----~~i~~ile~~~~~l~~gg 129 (187)
T COG2242 107 FIGGG----GNIEEILEAAWERLKPGG 129 (187)
T ss_pred EECCC----CCHHHHHHHHHHHcCcCC
Confidence 99887 334444443 2 344544
No 141
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.42 E-value=3.6e-07 Score=94.01 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
.|.+++.+.....+.+|||++||+|.+++.+++. ..+|+|+|.++.+++.++++...++ ..+++|+.+|+.+....
T Consensus 194 ~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 194 KMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHH
Confidence 4555555544333467999999999999987665 5699999999999999887654332 45899999998774321
Q ss_pred C---------------CCceeEEEEcccc
Q psy11730 357 I---------------HSKFDIILTSETI 370 (496)
Q Consensus 357 ~---------------~~~fD~Ii~~~~l 370 (496)
. ...||+|+..++-
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR 298 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPR 298 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCC
Confidence 1 1258999999994
No 142
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.40 E-value=1e-06 Score=88.73 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=75.5
Q ss_pred HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
+.+.+...++ +.+|||||||+|.++..+++..+ .+++++|. +.+++.++++....+ ...+++++.+|+.+.+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCC--
Confidence 3344444444 57999999999999999999876 68999997 789998876643322 34679999999876432
Q ss_pred CCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730 358 HSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH 389 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~ 389 (496)
..+|+|++..++|++.+. ..++++. .|.|++
T Consensus 214 -~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG 248 (306)
T TIGR02716 214 -PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG 248 (306)
T ss_pred -CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCC
Confidence 236999999999888543 3566552 556654
No 143
>PRK00811 spermidine synthase; Provisional
Probab=98.39 E-value=7.2e-07 Score=88.71 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCCceeEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
.++++||+||||+|..+..+++. +..+|+++|+++++++.|++.....+. ...++++++.+|.........++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35789999999999999998886 458999999999999999886543322 136789999999877554335789999
Q ss_pred EEcc
Q psy11730 365 LTSE 368 (496)
Q Consensus 365 i~~~ 368 (496)
++..
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 9964
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.39 E-value=5e-07 Score=92.58 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=66.5
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
.|++.+.+.....+.+|||+|||+|.+++.+++.. .+|+|+|++++|++.++++...++ ..+++|+.+|+.+....
T Consensus 185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHHHH
Confidence 45555555544344579999999999999877664 689999999999999987654332 45799999998875431
Q ss_pred C---------C------CceeEEEEccc
Q psy11730 357 I---------H------SKFDIILTSET 369 (496)
Q Consensus 357 ~---------~------~~fD~Ii~~~~ 369 (496)
. . ..||+|+.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 0 1 13899999998
No 145
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.38 E-value=1.7e-06 Score=91.01 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred ccCceeeecchH-HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730 265 YEGGYKIWECTF-DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLE 341 (496)
Q Consensus 265 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~ 341 (496)
+..|+-+.++.. .++..+.. ..+|.+|||+|||+|..+..++... ..+|+++|+|+.+++.++++....+ ..
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~ 288 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LS 288 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CC
Confidence 445555555533 23332321 2357899999999999999988753 4789999999999999987764433 45
Q ss_pred ceEEEecccCCccccCCCceeEEEEccccccccc----h------------------HhHhhe-e-eecCCCCCcccEEE
Q psy11730 342 KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN----Y------------------NKLLTV-W-CLFPTHTPKDLLKV 397 (496)
Q Consensus 342 ~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~----~------------------~~~~~~-~-~l~p~~~~~~~~~~ 397 (496)
++.+..+|+.+++....++||.|+++.+...... + ..++.. + .+.|+|. +++.
T Consensus 289 ~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~---LvYs 365 (431)
T PRK14903 289 SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI---LLYS 365 (431)
T ss_pred eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEE
Confidence 6899999988765333578999999776643321 1 112222 2 4556654 5555
Q ss_pred eeccCCcccccccchhhHhcCC
Q psy11730 398 TSAEGGKQRDEAITWFSIIYPR 419 (496)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (496)
.-.....+....+.+|...++.
T Consensus 366 TCs~~~eEne~vv~~fl~~~~~ 387 (431)
T PRK14903 366 TCTVTKEENTEVVKRFVYEQKD 387 (431)
T ss_pred ECCCChhhCHHHHHHHHHhCCC
Confidence 5544445566677777655554
No 146
>PRK04148 hypothetical protein; Provisional
Probab=98.38 E-value=1.3e-06 Score=76.11 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=69.2
Q ss_pred HHHHHHhCCC-CCCCeEEEecCcCCH-HHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 278 LLNFIKDNVA-VDKLSVLDVGCGAGL-LGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 278 l~~~l~~~~~-~~~~~VLDlGcGtG~-~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
++++|.++.. .++.+|||||||+|. ++..|++.| ..|+|+|+++..++.++.+ .+.++.+|+.+...
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 5666766553 356899999999996 888888776 5899999999999988754 35778899887766
Q ss_pred cCCCceeEEEE-ccccccccchHhHhh
Q psy11730 356 VIHSKFDIILT-SETIYSVANYNKLLT 381 (496)
Q Consensus 356 ~~~~~fD~Ii~-~~~l~~~~~~~~~~~ 381 (496)
..-..+|+|.+ .++-+..+..-.+-+
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 55678999998 444444444444444
No 147
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.36 E-value=9.3e-07 Score=88.75 Aligned_cols=99 Identities=11% Similarity=-0.036 Sum_probs=67.7
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCC---Ccee
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIH---SKFD 362 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~---~~fD 362 (496)
++.+|||+|||+|..+..+++.. ..+|+|+|+|++|++.++++..... ...++.++++|+.+.. .... ....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence 46789999999999999998876 4689999999999999887643211 2345777899987632 2111 1344
Q ss_pred EEEEccccccccc--hHhHhhee--eecCCC
Q psy11730 363 IILTSETIYSVAN--YNKLLTVW--CLFPTH 389 (496)
Q Consensus 363 ~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~ 389 (496)
++++..++++++. ...+++.+ .|.|++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 5556677887753 33455542 455654
No 148
>PTZ00146 fibrillarin; Provisional
Probab=98.36 E-value=2.5e-06 Score=83.97 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=74.5
Q ss_pred ceeeecchH-HHHHHHHhCC---CC-CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730 268 GYKIWECTF-DLLNFIKDNV---AV-DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNL 340 (496)
Q Consensus 268 ~~~~~~~~~-~l~~~l~~~~---~~-~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~ 340 (496)
.|++|+--. .|+..|..-+ .+ ++.+|||||||+|.++..++... ...|+++|+++.|.+.+...+. ..
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-----~r 180 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-----KR 180 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-----hc
Confidence 488898744 4665564433 23 47799999999999999999865 3689999999875533322221 12
Q ss_pred CceEEEecccCCccc--cCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730 341 EKCKFYHGDWGSLSA--VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 341 ~~v~~~~~d~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
.||.++.+|+..... ...+.||+|++..+ ...+...++.+ ..|.|++.
T Consensus 181 ~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 181 PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGH 232 (293)
T ss_pred CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCE
Confidence 478889999764211 11357999999774 22232233322 35667664
No 149
>KOG1356|consensus
Probab=98.36 E-value=1.3e-07 Score=101.79 Aligned_cols=55 Identities=31% Similarity=0.439 Sum_probs=50.9
Q ss_pred CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHHhhcCC
Q psy11730 428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGR 482 (496)
Q Consensus 428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~~~~~~ 482 (496)
+..|+.++|..||++|||+|.-|||.|+-.||.|+..|+|+.|..--++-|-..|
T Consensus 795 GVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR 849 (889)
T KOG1356|consen 795 GVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFR 849 (889)
T ss_pred CCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999998888886655
No 150
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.36 E-value=1.6e-06 Score=84.85 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
...+++.+.+... .++.+|||||||+|.++..+++.+. .|+++|+++.|++.++.+.. ...+++++++|+.+.
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~-----~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLS-----LYERLEVIEGDALKV 87 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhC-----cCCcEEEEECchhcC
Confidence 3345556665554 3578999999999999999998875 69999999999998875431 146899999999887
Q ss_pred cccCCCcee---EEEEcccccc
Q psy11730 354 SAVIHSKFD---IILTSETIYS 372 (496)
Q Consensus 354 ~~~~~~~fD---~Ii~~~~l~~ 372 (496)
+.. .|| +|+++.+++.
T Consensus 88 ~~~---~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 88 DLP---DFPKQLKVVSNLPYNI 106 (253)
T ss_pred Chh---HcCCcceEEEcCChhh
Confidence 642 466 8999988653
No 151
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.35 E-value=1e-06 Score=86.82 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++....+ ..++.++..|...+... .+.||+|+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~-~~~fD~Vl 145 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAA-VPKFDAIL 145 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhh-ccCCCEEE
Confidence 357899999999999999988754 2589999999999999887664432 45789999998765433 45699999
Q ss_pred Ecccccccc----c-----------h-------HhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCCC
Q psy11730 366 TSETIYSVA----N-----------Y-------NKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRT 420 (496)
Q Consensus 366 ~~~~l~~~~----~-----------~-------~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (496)
++.+..-.. + . ..+++. + .+.|+|. ++|..-.....+....+.+|...++..
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~---lvYstcs~~~~Ene~vv~~~l~~~~~~ 221 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV---LVYSTCSLEPEENEAVVDYLLEKRPDV 221 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEeCCCChHHHHHHHHHHHHhCCCc
Confidence 877654321 1 1 112322 2 4556553 566655555555677888887776653
No 152
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=1.2e-06 Score=92.79 Aligned_cols=80 Identities=16% Similarity=0.052 Sum_probs=63.9
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
++.+|||+|||+|..++.+++.. ..+|+|+|+++.+++.++++....+ ..+++++.+|+.++.....+.||+|++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccchhcccCCEEEE
Confidence 57899999999999999998763 4799999999999999887654332 346999999988764322478999999
Q ss_pred ccccc
Q psy11730 367 SETIY 371 (496)
Q Consensus 367 ~~~l~ 371 (496)
+.+..
T Consensus 327 D~Pcs 331 (444)
T PRK14902 327 DAPCS 331 (444)
T ss_pred cCCCC
Confidence 87643
No 153
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=1.3e-06 Score=79.71 Aligned_cols=102 Identities=27% Similarity=0.426 Sum_probs=85.1
Q ss_pred ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
|.....+++++..+.. +.+++|||+|+|+|.-++..++.|++.|++.|+.+......+.+. ..| ..++.|.+.|.
T Consensus 61 WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa-~an---gv~i~~~~~d~ 136 (218)
T COG3897 61 WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNA-AAN---GVSILFTHADL 136 (218)
T ss_pred HhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcch-hhc---cceeEEeeccc
Confidence 9999999999999875 679999999999999999999999999999999987777655443 222 46778887775
Q ss_pred CCccccCCCceeEEEEccccccccchHhHhh
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
-. . +..||+|+..+++|.-+....++.
T Consensus 137 ~g-~---~~~~Dl~LagDlfy~~~~a~~l~~ 163 (218)
T COG3897 137 IG-S---PPAFDLLLAGDLFYNHTEADRLIP 163 (218)
T ss_pred cC-C---CcceeEEEeeceecCchHHHHHHH
Confidence 54 2 678999999999998877777765
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.4e-06 Score=79.86 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=68.8
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC--ceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS--KFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~fD~Ii 365 (496)
+.|.+|||+.+|||.+++.++.+|+..++.||.+...+..++++... .+...++.++.+|.......... .||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~--l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA--LGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--hCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 68999999999999999999999999999999999999988876432 23457889999998855433344 499999
Q ss_pred Eccccc
Q psy11730 366 TSETIY 371 (496)
Q Consensus 366 ~~~~l~ 371 (496)
..+|+.
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999998
No 155
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.31 E-value=1.2e-06 Score=89.87 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
.|.+++.+.....+..|||+.||+|.+++.||... ++|+|||.++.+++.|++++..++ ..|++|+.++.+++...
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHCCCH
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccchhHH
Confidence 56677767666665589999999999999976655 589999999999999988765443 68999999877654321
Q ss_pred C---------------CCceeEEEEccc
Q psy11730 357 I---------------HSKFDIILTSET 369 (496)
Q Consensus 357 ~---------------~~~fD~Ii~~~~ 369 (496)
. ...+|+|+..+|
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 0 126899998776
No 156
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=1.8e-06 Score=91.36 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=84.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++....+ ..+++++.+|+.++.. .++||+|+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~~--~~~fD~Vl 323 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFSP--EEQPDAIL 323 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCccccccc--CCCCCEEE
Confidence 457899999999999999887643 3689999999999999887764433 3579999999887652 56899999
Q ss_pred Eccccccc---------------cch-------HhHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730 366 TSETIYSV---------------ANY-------NKLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR 419 (496)
Q Consensus 366 ~~~~l~~~---------------~~~-------~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (496)
+..+..-. .+. ..++.. ..+.|+|. +++..-.....+....+.+|...++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~---lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV---LVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 86543111 011 123333 25566664 55554444444456667777776654
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=3.8e-06 Score=80.20 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=74.9
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc---------ccCCCCceEE
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM---------NTDNLEKCKF 345 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~---------~~~~~~~v~~ 345 (496)
.-.|.+++......++.+||+.|||.|..+.+||..|.. |+|+|+|+.+++.+.+++... ......++++
T Consensus 29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 107 (226)
T PRK13256 29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI 107 (226)
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence 445666666544345789999999999999999999985 999999999999975532110 0112458999
Q ss_pred EecccCCccc--cCCCceeEEEEcccccccc
Q psy11730 346 YHGDWGSLSA--VIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 346 ~~~d~~~~~~--~~~~~fD~Ii~~~~l~~~~ 374 (496)
+++|+.++.. ...+.||+|+-..++..++
T Consensus 108 ~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp 138 (226)
T PRK13256 108 YVADIFNLPKIANNLPVFDIWYDRGAYIALP 138 (226)
T ss_pred EEccCcCCCccccccCCcCeeeeehhHhcCC
Confidence 9999998864 2236899999988888883
No 158
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.28 E-value=2.7e-06 Score=89.66 Aligned_cols=80 Identities=20% Similarity=0.088 Sum_probs=63.4
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii 365 (496)
.++.+|||+|||+|..++.+++.+. .+|+|+|+|+.+++.++++....+ .+++++.+|+.++... ..++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhcccCCCCEEE
Confidence 3688999999999999999998765 699999999999999887664432 1368899998765431 246799999
Q ss_pred Eccccc
Q psy11730 366 TSETIY 371 (496)
Q Consensus 366 ~~~~l~ 371 (496)
++.+..
T Consensus 319 ~D~Pcs 324 (427)
T PRK10901 319 LDAPCS 324 (427)
T ss_pred ECCCCC
Confidence 877654
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.23 E-value=3.9e-06 Score=78.26 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=58.3
Q ss_pred hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
.+.+.+..+.... .++.+|||+|||+|.++..++... ..+|+|+|+|+.+ . ..++.++.+|+.
T Consensus 17 ~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~----------~~~i~~~~~d~~ 82 (188)
T TIGR00438 17 SFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P----------IENVDFIRGDFT 82 (188)
T ss_pred HHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c----------CCCceEEEeeCC
Confidence 3456666665544 458899999999999999988764 3589999999865 1 235778888876
Q ss_pred Ccc-------ccCCCceeEEEEccc
Q psy11730 352 SLS-------AVIHSKFDIILTSET 369 (496)
Q Consensus 352 ~~~-------~~~~~~fD~Ii~~~~ 369 (496)
+.. ....+.||+|+++.+
T Consensus 83 ~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 83 DEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred ChhHHHHHHHHhCCCCccEEEcCCC
Confidence 532 112467999999654
No 160
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.22 E-value=3.4e-06 Score=89.05 Aligned_cols=126 Identities=18% Similarity=0.093 Sum_probs=85.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc---cCCCcee
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA---VIHSKFD 362 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD 362 (496)
.+|.+|||+|||+|..+..+++.. .++|+++|+++.+++.++++.... +..+++++.+|..++.. ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhcccccccccccCC
Confidence 357899999999999999998753 368999999999999988765433 24579999999887652 1246899
Q ss_pred EEEEccccc------cccc----------------hHhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730 363 IILTSETIY------SVAN----------------YNKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP 418 (496)
Q Consensus 363 ~Ii~~~~l~------~~~~----------------~~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (496)
.|+++.+.. +.++ ...++.. + .+.|+|. +++..-.....+....+.+|...++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~---lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT---LVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEeCCCChhhHHHHHHHHHHhCC
Confidence 999865532 2222 1223332 2 5566654 5555544444455666767766555
Q ss_pred C
Q psy11730 419 R 419 (496)
Q Consensus 419 ~ 419 (496)
.
T Consensus 405 ~ 405 (434)
T PRK14901 405 D 405 (434)
T ss_pred C
Confidence 4
No 161
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.16 E-value=6.1e-06 Score=86.94 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii 365 (496)
.++.+|||+|||+|..+..+++.. ..+|+|+|+++.+++.++++....+. ...+.+..+|...... ...++||.|+
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccccccccccccCEEE
Confidence 357899999999999999998754 47999999999999998876644331 1234446666554332 1256899999
Q ss_pred Eccccc------cccc----------------hHhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730 366 TSETIY------SVAN----------------YNKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR 419 (496)
Q Consensus 366 ~~~~l~------~~~~----------------~~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (496)
+..+.. ..++ ...++.. + .+.|+|. +++..-.....+....+.+|...++.
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~---lvystcs~~~~Ene~~v~~~l~~~~~ 389 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT---LVYATCSVLPEENSEQIKAFLQEHPD 389 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEeCCCChhhCHHHHHHHHHhCCC
Confidence 764433 2222 1223333 2 5667664 56665555555667777777776654
No 162
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=3.6e-06 Score=81.36 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCce
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSKF 361 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~f 361 (496)
++++|||||||+|..++.++.. + ..+|+++|+++++++.|+++....+ ...+++++.+|+.+.... ..++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 5789999999999999888764 2 3799999999999999988765443 346899999998765321 13689
Q ss_pred eEEEEcc
Q psy11730 362 DIILTSE 368 (496)
Q Consensus 362 D~Ii~~~ 368 (496)
|+|+...
T Consensus 146 D~VfiDa 152 (234)
T PLN02781 146 DFAFVDA 152 (234)
T ss_pred CEEEECC
Confidence 9999964
No 163
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1e-05 Score=78.37 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=75.1
Q ss_pred hHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 275 TFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
...+++.|.+...+. +..|||||+|.|.++..|++.+.. |++||+++.++...++... ...|++++++|+.+.
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~-----~~~n~~vi~~DaLk~ 88 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA-----PYDNLTVINGDALKF 88 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc-----cccceEEEeCchhcC
Confidence 344566777666544 689999999999999999998865 9999999999999887652 367899999999988
Q ss_pred cccCCCceeEEEEcccccccc
Q psy11730 354 SAVIHSKFDIILTSETIYSVA 374 (496)
Q Consensus 354 ~~~~~~~fD~Ii~~~~l~~~~ 374 (496)
.......++.|++|-+++-.+
T Consensus 89 d~~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 89 DFPSLAQPYKVVANLPYNISS 109 (259)
T ss_pred cchhhcCCCEEEEcCCCcccH
Confidence 763112789999999976653
No 164
>PRK01581 speE spermidine synthase; Validated
Probab=98.12 E-value=5.3e-06 Score=83.94 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=63.4
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCc--ccccc--cCCCCceEEEecccCCccccCCCcee
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLP--NILMN--TDNLEKCKFYHGDWGSLSAVIHSKFD 362 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~--~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD 362 (496)
...++||+||||+|.....+++... .+|++||++++|++.|++. ....+ ....++++++.+|..+......+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4577999999999999988887654 7999999999999999962 11111 12467999999998876544457899
Q ss_pred EEEEcc
Q psy11730 363 IILTSE 368 (496)
Q Consensus 363 ~Ii~~~ 368 (496)
+|++..
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 999974
No 165
>PRK03612 spermidine synthase; Provisional
Probab=98.08 E-value=6.4e-06 Score=88.79 Aligned_cols=84 Identities=20% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcc--cccc--cCCCCceEEEecccCCccccCCCceeE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPN--ILMN--TDNLEKCKFYHGDWGSLSAVIHSKFDI 363 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~--~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD~ 363 (496)
++++|||||||+|..+..+++... .+|+++|+++++++.++++. ...+ ....++++++.+|..+......++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 578999999999999999888765 79999999999999999842 1111 123578999999988754433578999
Q ss_pred EEEcccccc
Q psy11730 364 ILTSETIYS 372 (496)
Q Consensus 364 Ii~~~~l~~ 372 (496)
|+++.+...
T Consensus 377 Ii~D~~~~~ 385 (521)
T PRK03612 377 IIVDLPDPS 385 (521)
T ss_pred EEEeCCCCC
Confidence 999865433
No 166
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.08 E-value=4e-06 Score=75.69 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=54.8
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC-C-ceeEEEEcc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH-S-KFDIILTSE 368 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~fD~Ii~~~ 368 (496)
+.|+|+.||.|..++.+|+.. .+|++||+++..++.|+.++...+ ...+|.|+++|+.++..... . .||+|++++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999988884 689999999999999998765443 36789999999988754322 2 289999987
Q ss_pred cc
Q psy11730 369 TI 370 (496)
Q Consensus 369 ~l 370 (496)
|-
T Consensus 78 PW 79 (163)
T PF09445_consen 78 PW 79 (163)
T ss_dssp -B
T ss_pred CC
Confidence 64
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.07 E-value=7.9e-06 Score=86.00 Aligned_cols=80 Identities=28% Similarity=0.292 Sum_probs=57.4
Q ss_pred CCeEEEecCcCCHHHHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNG-----AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
++.|||||||+|.++.++++.+ +.+|++||-|+.++..+++....+ +-..+|+++++|++++.. ..++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~l--pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVEL--PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCC--CCceeEE
Confidence 6789999999999999887765 579999999998887655432111 235689999999999887 5699999
Q ss_pred EEccccccc
Q psy11730 365 LTSETIYSV 373 (496)
Q Consensus 365 i~~~~l~~~ 373 (496)
||..+-.+.
T Consensus 263 VSElLGsfg 271 (448)
T PF05185_consen 263 VSELLGSFG 271 (448)
T ss_dssp EE---BTTB
T ss_pred EEeccCCcc
Confidence 997665443
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.04 E-value=1.1e-05 Score=79.65 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=62.2
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
.+++||+||||+|.++..+++.. ..+|+++|+++++++.+++.....+ .....+++++.+|..+......++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 46799999999999999988776 4789999999999999887543322 123467888888876543332578999999
Q ss_pred ccc
Q psy11730 367 SET 369 (496)
Q Consensus 367 ~~~ 369 (496)
..+
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 765
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.04 E-value=9.1e-06 Score=77.53 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=72.1
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc-ccccc--------cCCCCceEE
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP-NILMN--------TDNLEKCKF 345 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~-~~~~~--------~~~~~~v~~ 345 (496)
+-.|.+++.......+.+||..|||.|.....||+.|. +|+|+|+|+.+++.+.+. +...+ .....+|++
T Consensus 23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 45677777763334567999999999999999999985 899999999999987332 21111 113457899
Q ss_pred EecccCCccccCCCceeEEEEccccccc
Q psy11730 346 YHGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
+++|+-++.....++||+|+=..++.-+
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Al 129 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCAL 129 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS
T ss_pred EEcccccCChhhcCCceEEEEecccccC
Confidence 9999998876544689999987777666
No 170
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.04 E-value=1.4e-05 Score=75.03 Aligned_cols=89 Identities=22% Similarity=0.201 Sum_probs=61.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
++..|||+.||.|.+++.+|+. .++.|+++|++|.+++.++++...++ ...++.++++|..++.. ...||.|+++
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~--~~~~drvim~ 176 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP--EGKFDRVIMN 176 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG-----TT-EEEEEE-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC--ccccCEEEEC
Confidence 5889999999999999999884 44789999999999999887654443 34678999999988776 6899999998
Q ss_pred cccccccchHhHhh
Q psy11730 368 ETIYSVANYNKLLT 381 (496)
Q Consensus 368 ~~l~~~~~~~~~~~ 381 (496)
.+-....-++.++.
T Consensus 177 lp~~~~~fl~~~~~ 190 (200)
T PF02475_consen 177 LPESSLEFLDAALS 190 (200)
T ss_dssp -TSSGGGGHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 87555544444443
No 171
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.03 E-value=6e-06 Score=84.84 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=78.6
Q ss_pred eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
+|.+......++.+.. +|++|||+.|=||.+++.+|..|+.+||+||.|...++.|+++. ..|.....++.|+.+|+
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~-~LNg~~~~~~~~i~~Dv 277 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNGLDGDRHRFIVGDV 277 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHH-HhcCCCccceeeehhhH
Confidence 4666666666666554 49999999999999999988889999999999999999998765 44545567789999997
Q ss_pred CCccccC---CCceeEEEEcccccc
Q psy11730 351 GSLSAVI---HSKFDIILTSETIYS 372 (496)
Q Consensus 351 ~~~~~~~---~~~fD~Ii~~~~l~~ 372 (496)
-+..... ..+||+|+..+|-.-
T Consensus 278 f~~l~~~~~~g~~fDlIilDPPsF~ 302 (393)
T COG1092 278 FKWLRKAERRGEKFDLIILDPPSFA 302 (393)
T ss_pred HHHHHHHHhcCCcccEEEECCcccc
Confidence 7655432 348999999887543
No 172
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.02 E-value=1.3e-05 Score=79.71 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
|++.+.+... .++..+||.+||.|.++..+++... .+|+|+|.+++|++.++++... ..++.++++++.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHH
Confidence 3334444433 4577999999999999999998864 7899999999999999876422 458999999998875
Q ss_pred ccCCC---ceeEEEEcccc--ccccchHhH
Q psy11730 355 AVIHS---KFDIILTSETI--YSVANYNKL 379 (496)
Q Consensus 355 ~~~~~---~fD~Ii~~~~l--~~~~~~~~~ 379 (496)
..... ++|.|+++.=+ +.+.+.+.=
T Consensus 82 ~~l~~~~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred HHHHcCCCccCEEEECCCccccccCCCcCC
Confidence 44332 79999984333 333444443
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.00 E-value=2.6e-05 Score=69.46 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=78.6
Q ss_pred eecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730 271 IWECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH 347 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~ 347 (496)
+-+++-.+++.+...++.. |.-|||+|.|||.++.++..+|. ..+++||+|++.+....+. .+.+.++.
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~ 100 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN 100 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence 3577778888888887655 77999999999999999999887 6799999999999987764 34566889
Q ss_pred cccCCccc----cCCCceeEEEEccccccccch
Q psy11730 348 GDWGSLSA----VIHSKFDIILTSETIYSVANY 376 (496)
Q Consensus 348 ~d~~~~~~----~~~~~fD~Ii~~~~l~~~~~~ 376 (496)
+|+.++.. ..+..||.|+|.-++-.++-.
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~ 133 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH 133 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHH
Confidence 99887652 224579999998887777543
No 174
>KOG2187|consensus
Probab=97.99 E-value=7.6e-06 Score=84.86 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 277 DLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 277 ~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
.|...+.+..+++ ++.+||+.||||.+++. ..++.++|+||++++++++.|+.++..++ ..|++|+.+-+|++-
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAEDLF 444 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehh-hhccccceeeeecChhhcchhhhcchhcC---ccceeeeecchhhcc
Confidence 4566666666665 67899999999999999 55677899999999999999998876554 899999999777654
No 175
>KOG0820|consensus
Probab=97.98 E-value=2.8e-05 Score=74.51 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 276 FDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 276 ~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
..+++.|.+..+++ +..|||+|.|||.++..|.+.|. .|+|+|+++.|++...++.. +......++++++|+...+
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~--gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQ--GTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhc--CCCccceeeEEecccccCC
Confidence 34566666666655 77999999999999999888875 69999999999999887752 2223578999999998875
Q ss_pred ccCCCceeEEEEccccccc
Q psy11730 355 AVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~~ 373 (496)
...||++|++-++..-
T Consensus 121 ---~P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 121 ---LPRFDGCVSNLPYQIS 136 (315)
T ss_pred ---CcccceeeccCCcccc
Confidence 3679999998886554
No 176
>PLN02366 spermidine synthase
Probab=97.98 E-value=2.5e-05 Score=78.36 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccC-CCceeEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVI-HSKFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~-~~~fD~I 364 (496)
.++++||+||||.|.++..+++... .+|+.+|+++.+++.+++.....+ ....++++++.+|..+..... .+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3578999999999999999988754 789999999999999988754322 124678999999976543321 4689999
Q ss_pred EEccc
Q psy11730 365 LTSET 369 (496)
Q Consensus 365 i~~~~ 369 (496)
++...
T Consensus 170 i~D~~ 174 (308)
T PLN02366 170 IVDSS 174 (308)
T ss_pred EEcCC
Confidence 99644
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.96 E-value=1.7e-05 Score=73.32 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-Ce---------EEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AH---------VSFQDYNQEVIESLTLPNILMNTDNLEKCKF 345 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~---------v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~ 345 (496)
.++..|...... ++..|||--||+|.+.+..+..+. .. ++|+|++++++..++.+.... +....+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEE
Confidence 345555554443 467999999999999999876655 33 889999999999988775433 34567899
Q ss_pred EecccCCccccCCCceeEEEEccccccc
Q psy11730 346 YHGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
.+.|+.+++.. .+.+|+|++++++-.-
T Consensus 93 ~~~D~~~l~~~-~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 93 IQWDARELPLP-DGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EE--GGGGGGT-TSBSCEEEEE--STTS
T ss_pred Eecchhhcccc-cCCCCEEEECcchhhh
Confidence 99999998833 6899999999998764
No 178
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.92 E-value=2.3e-05 Score=79.43 Aligned_cols=118 Identities=20% Similarity=0.124 Sum_probs=70.1
Q ss_pred ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC-------CCCce
Q psy11730 272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD-------NLEKC 343 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~-------~~~~v 343 (496)
|..+..+..++..... .++.+|||||||-|.....-...+..+++|+|++...|+.|+.+-...... ..-..
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 4444444444432221 257899999999766655558888999999999999999999886322211 11245
Q ss_pred EEEecccCCcc-----ccCCCceeEEEEccccccc-cchH---hHhhee--eecCCC
Q psy11730 344 KFYHGDWGSLS-----AVIHSKFDIILTSETIYSV-ANYN---KLLTVW--CLFPTH 389 (496)
Q Consensus 344 ~~~~~d~~~~~-----~~~~~~fD~Ii~~~~l~~~-~~~~---~~~~~~--~l~p~~ 389 (496)
.|+.+|..... ......||+|-|..++|+. .+.+ .+++.. .|.|+|
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 66777644221 1112599999999999998 3322 233332 666765
No 179
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.89 E-value=1.4e-05 Score=72.66 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730 316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT 390 (496)
Q Consensus 316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~ 390 (496)
+|+|+|++|++.|+++....+.....+++++++|+++++.. +++||+|++..+++++.++..+++++ .|.|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD-DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC-CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence 48999999999997654322222345799999999998764 67999999999999999999999884 7777653
No 180
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.86 E-value=3e-05 Score=72.70 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=60.4
Q ss_pred CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-c-CCCceeEEEEc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-V-IHSKFDIILTS 367 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~fD~Ii~~ 367 (496)
..+||||||.|.+.+.+|+..+ ..++|+|++...+..+.++.... ...|+.++++|+..+.. . .++++|.|..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 3899999999999999999888 78999999999999988776554 47899999999887432 2 25899999988
Q ss_pred cccccc
Q psy11730 368 ETIYSV 373 (496)
Q Consensus 368 ~~l~~~ 373 (496)
.+=-+.
T Consensus 96 FPDPWp 101 (195)
T PF02390_consen 96 FPDPWP 101 (195)
T ss_dssp S-----
T ss_pred CCCCCc
Confidence 776665
No 181
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.85 E-value=1.9e-05 Score=81.68 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=60.4
Q ss_pred CCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.++++...++ ..++.+.++|+..+... ...||+|++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~-~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHE-ERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence 468999999999999999765 44789999999999999886653332 44677899998775432 35799999987
Q ss_pred c
Q psy11730 369 T 369 (496)
Q Consensus 369 ~ 369 (496)
+
T Consensus 134 ~ 134 (382)
T PRK04338 134 F 134 (382)
T ss_pred C
Confidence 4
No 182
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=2.6e-05 Score=77.59 Aligned_cols=116 Identities=17% Similarity=0.312 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeee---cCCC---ccccCHHHHHHHhhcCCC
Q psy11730 61 KDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGE---DNHG---YSKLGKKYRNQKFKCGED 134 (496)
Q Consensus 61 ~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~---~~~~---~~~m~~~~f~~~~~~~~~ 134 (496)
..+|+++|++.|-. .||+||+|+..+. ...-+++-|.+-+-...|...- ..++ .+.-+|.++= +.... .
T Consensus 13 ~glt~~~FL~~YWq-kKPlliR~a~p~~--~~p~~pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~d-~~~~p-~ 87 (383)
T COG2850 13 LGLTPEDFLRDYWQ-KKPLLIRNAFPEF--HSPLSPDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEED-FLGLP-R 87 (383)
T ss_pred CCCCHHHHHHHHhh-hcchHHhhccccc--ccCCCHHHHHHHhccccccchhhhhccCCceeEeeCccchhc-cccCC-c
Confidence 47999999999998 8999999998552 2344566688877776665541 1111 1123333221 11111 1
Q ss_pred CCCCC--------ccccccccccCC-CCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730 135 NHGYS--------HPRRKKLLDDYE-VPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP 195 (496)
Q Consensus 135 ~p~y~--------~~~~~~L~~d~~-~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~ 195 (496)
+ +.+ ......|.+.|. +|..=.+|.+ +...+.|.+.+-|+|.+..++
T Consensus 88 ~-wsllvq~vd~w~p~v~~l~~~FrflP~wr~ddiM-------------IS~a~~GGgvg~H~D~YDVfl 143 (383)
T COG2850 88 N-WSLLVQAVDHWHPEVAALMEPFRFLPDWRIDDIM-------------ISFAAPGGGVGPHFDQYDVFL 143 (383)
T ss_pred C-ceEEEehhhhcCHHHHHHHHHhccCccccccceE-------------EEEecCCCccCccccchheeE
Confidence 1 111 122345555565 5644334432 445788889999999999999
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.82 E-value=2.4e-05 Score=77.36 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=68.2
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
+.+....-.++.+. .++++|||+.|=||.+++.++..|+.+|+.||.|..+++.++++... |.....+++|+.+|+.
T Consensus 108 FlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 108 FLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HH
T ss_pred cHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHH
Confidence 44444444555554 36899999999999999998888889999999999999999986544 4344578999999977
Q ss_pred Ccccc--CCCceeEEEEccccc
Q psy11730 352 SLSAV--IHSKFDIILTSETIY 371 (496)
Q Consensus 352 ~~~~~--~~~~fD~Ii~~~~l~ 371 (496)
+.... ..+.||+||+.+|-.
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF 206 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSF 206 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSE
T ss_pred HHHHHHhcCCCCCEEEECCCCC
Confidence 64321 246899999988844
No 184
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=97.79 E-value=1.5e-05 Score=67.60 Aligned_cols=39 Identities=38% Similarity=0.647 Sum_probs=31.8
Q ss_pred CCCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecc
Q psy11730 427 TEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNF 465 (496)
Q Consensus 427 ~~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~ 465 (496)
.+.++..++|+|||++++|.||+|+|.|++.|++++.||
T Consensus 76 ~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 76 AGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 356788999999999999999999999999999999997
No 185
>KOG1975|consensus
Probab=97.78 E-value=2.1e-05 Score=77.03 Aligned_cols=102 Identities=22% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc---CCCCceEEEecccC-----CccccCCCc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT---DNLEKCKFYHGDWG-----SLSAVIHSK 360 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~v~~~~~d~~-----~~~~~~~~~ 360 (496)
++..++|||||-|...+.--+.|..+++|||+.+-.|+.|+++...-.+ ...=.+.|+.+|-. ++....+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 5788999999999988888899999999999999999999887432211 11224677877732 222122445
Q ss_pred eeEEEEccccccc-cchHh---Hhhe--eeecCCCC
Q psy11730 361 FDIILTSETIYSV-ANYNK---LLTV--WCLFPTHT 390 (496)
Q Consensus 361 fD~Ii~~~~l~~~-~~~~~---~~~~--~~l~p~~~ 390 (496)
||+|-|-.++|+- ...+. ++.. -+|.|+|.
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 9999999888876 33332 3333 27777763
No 186
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.76 E-value=3.2e-05 Score=73.02 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCce
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSKF 361 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f 361 (496)
+.++|||||||+|+-++.+|+.-+ ++|+.+|.+++..+.|++.....+ ...+|+++.+|+.+..... .++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 678999999999999999997643 799999999999999887654433 3468999999987643321 2579
Q ss_pred eEEEEccc
Q psy11730 362 DIILTSET 369 (496)
Q Consensus 362 D~Ii~~~~ 369 (496)
|+|+....
T Consensus 123 D~VFiDa~ 130 (205)
T PF01596_consen 123 DFVFIDAD 130 (205)
T ss_dssp EEEEEEST
T ss_pred eEEEEccc
Confidence 99999543
No 187
>PLN02476 O-methyltransferase
Probab=97.74 E-value=4.8e-05 Score=74.84 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCce
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSKF 361 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f 361 (496)
+.++|||||||+|..++.++..- .++|+++|.+++.++.|+++....+ ...+++++.+|+.+..... .+.|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 57899999999999999998742 2579999999999999987765443 3468999999987653321 3589
Q ss_pred eEEEEccc
Q psy11730 362 DIILTSET 369 (496)
Q Consensus 362 D~Ii~~~~ 369 (496)
|+|+....
T Consensus 196 D~VFIDa~ 203 (278)
T PLN02476 196 DFAFVDAD 203 (278)
T ss_pred CEEEECCC
Confidence 99999655
No 188
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.73 E-value=7.2e-05 Score=76.98 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=62.1
Q ss_pred CeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
-+|||+.||+|..++.++.. |+.+|+++|+|+++++.++++...++ ..++.++++|+..+.......||+|...+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 48999999999999999987 66899999999999999887653332 34789999998877653346799999977
No 189
>KOG1633|consensus
Probab=97.70 E-value=0.00011 Score=81.19 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCCcEEEec---CCCCCcCCCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCC
Q psy11730 66 QEFIEKYEKPNKPVVIKG---VTENWNATYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYS 139 (496)
Q Consensus 66 eeF~~~y~~~~~PvVi~g---~~~~WpA~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~ 139 (496)
-+|+++-.. +.|..+.+ +-..-|.. .+|..--+.-.| ++.+.|-++..... +|+|++|++|+.....+ -|..
T Consensus 8 ~ef~~~~~~-~~p~~~~~~~~lg~~~p~p-~f~v~dv~~~vg~~r~~~v~dv~~q~~~km~~~~~~~yy~~~~~~R~yNV 85 (776)
T KOG1633|consen 8 VEFLQDNGL-RVPILFRNKDGLGMTLPSP-DFTVNDVKELVGSDRMIDVVDVNTQKDCKMTLKEFVKYYSSPQRKRLYNV 85 (776)
T ss_pred chhhhhccc-ccchhhccCCCccccCCCC-CcchhhhHHhhCCCccceeeeeeccccccccHHHHhhhhcCcchhhhhhe
Confidence 467766555 68888873 33334443 566665555555 45577776655555 99999999999876654 2221
Q ss_pred cc-c--cccccccCCCCCCCch-hhh-cccCCCC---CC-CccceEecCCCCccccccCCCCCCC
Q psy11730 140 HP-R--RKKLLDDYEVPIYFQD-DLF-QYAGEDK---RP-PYRWFVMGPARSGTGIHIDPLGTNP 195 (496)
Q Consensus 140 ~~-~--~~~L~~d~~~P~~f~~-d~~-~~~~~~~---~p-~~~w~~iG~~gs~T~lH~D~~~~~~ 195 (496)
.. . ...|..-++.|+.... |+. .++++.. .| ....-.|+-.++.|.+|+|+.++++
T Consensus 86 isLEfS~Trl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Ytdfhidfggtsv 150 (776)
T KOG1633|consen 86 ISLEFSDTRLSNLVESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSYTDFHIDFGGTSV 150 (776)
T ss_pred eccccCcchHHhcCCCchhhhhhhchhccCCchhcccccccccceeeeccccccccccCCCCcch
Confidence 11 1 1334444555654421 221 1111111 11 1234569999999999999999999
No 190
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00012 Score=69.29 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=67.4
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCcccc-CCCceeEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSAV-IHSKFDII 364 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~~-~~~~fD~I 364 (496)
..++|||||++.|+-++.||..-+ .+++.||.++++++.|+++..+.+ ...++.++. +|+.+.... ..++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHhccCCCccEE
Confidence 678999999999999999987555 689999999999999998765543 344588888 476665442 36899999
Q ss_pred EEc-cccccccchHhHhh
Q psy11730 365 LTS-ETIYSVANYNKLLT 381 (496)
Q Consensus 365 i~~-~~l~~~~~~~~~~~ 381 (496)
+.. .--.+...++..++
T Consensus 137 FIDadK~~yp~~le~~~~ 154 (219)
T COG4122 137 FIDADKADYPEYLERALP 154 (219)
T ss_pred EEeCChhhCHHHHHHHHH
Confidence 983 33333333444443
No 191
>KOG2940|consensus
Probab=97.68 E-value=4.3e-05 Score=71.34 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET 369 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~ 369 (496)
...++|||||-|.+...+...+..+++-+|.|..|++.++... .+.-.+....+|-+.+++. .+++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~-ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFK-ENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-----CCceEEEEEecchhccccc-ccchhhhhhhhh
Confidence 5689999999999999999999999999999999999987642 1233445566777777643 789999999999
Q ss_pred cccccchHhHhhee--eecCCC
Q psy11730 370 IYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 370 l~~~~~~~~~~~~~--~l~p~~ 389 (496)
+|++.+++.-+..+ .+.|++
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDG 168 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCc
Confidence 99998888766543 556654
No 192
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.67 E-value=0.00015 Score=71.42 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred ecchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 272 WECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
+-....+++.|.+...+ ++..|||||+|.|.++..|++.+ ++|+++|+++.++...+++.. ...+++++.+|+
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~ 85 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDF 85 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-T
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-----hcccceeeecch
Confidence 34455677777776665 57899999999999999999988 899999999999998886542 367899999999
Q ss_pred CCccccC--CCceeEEEEccccc
Q psy11730 351 GSLSAVI--HSKFDIILTSETIY 371 (496)
Q Consensus 351 ~~~~~~~--~~~fD~Ii~~~~l~ 371 (496)
.++.... ......|+++.+++
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 9877642 34677899988863
No 193
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.63 E-value=0.00019 Score=69.56 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=61.4
Q ss_pred HHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--
Q psy11730 281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-- 355 (496)
Q Consensus 281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-- 355 (496)
+|....++ +|++|||.|.|+|.++.+|+.. ++ ++|+..|..++.++.|+++.... +...++++.+.|+.+..+
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceecccccc
Confidence 33333443 5899999999999999999964 43 79999999999999999875443 346799999999865333
Q ss_pred cCCCceeEEEEccc
Q psy11730 356 VIHSKFDIILTSET 369 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~ 369 (496)
.....+|.|+...+
T Consensus 109 ~~~~~~DavfLDlp 122 (247)
T PF08704_consen 109 ELESDFDAVFLDLP 122 (247)
T ss_dssp T-TTSEEEEEEESS
T ss_pred cccCcccEEEEeCC
Confidence 22468999998544
No 194
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.63 E-value=0.00015 Score=81.00 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-------------------------------------------CCeEEEEeCCHHHH
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-------------------------------------------AAHVSFQDYNQEVI 325 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-------------------------------------------~~~v~giD~s~~~i 325 (496)
.+..++|-+||+|.+.+.+|... ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999999976521 12699999999999
Q ss_pred HHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEccccccc
Q psy11730 326 ESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIYSV 373 (496)
Q Consensus 326 ~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~~~ 373 (496)
+.|+.+....+ ....+.|.++|+.++.... .++||+|++|+|+..-
T Consensus 270 ~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 270 QAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER 316 (702)
T ss_pred HHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence 99998765433 3456899999998876532 2579999999998543
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.60 E-value=0.00014 Score=67.35 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=58.3
Q ss_pred CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.+++|||+|.|..++.+|-..+ .+++.+|.+..-+.+.+.-.... +..|++++++++++ ......||+|++-.
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 33899999999999999998887 68999999999988876554443 36789999999998 22268999999965
Q ss_pred c
Q psy11730 369 T 369 (496)
Q Consensus 369 ~ 369 (496)
+
T Consensus 124 v 124 (184)
T PF02527_consen 124 V 124 (184)
T ss_dssp S
T ss_pred h
Confidence 4
No 196
>KOG3201|consensus
Probab=97.59 E-value=1.8e-05 Score=69.99 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=87.0
Q ss_pred ccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcC-CHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730 265 YEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGA-GLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLE 341 (496)
Q Consensus 265 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGt-G~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~ 341 (496)
+++.-++|+++..|+-.+..... ..|++|||+|.|- |.-++.+|...+ ..|...|-+++.+...++-...+......
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~t 83 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLT 83 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence 46677899999999988887753 6789999999994 676777665544 78999999999988665432111122334
Q ss_pred ceEEEecccCC-ccccCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730 342 KCKFYHGDWGS-LSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT 390 (496)
Q Consensus 342 ~v~~~~~d~~~-~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~ 390 (496)
.+.++.-++.. ........||+|++.+++.+-+..+.+.+. ..|.|.+.
T Consensus 84 sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 84 SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc
Confidence 44444444332 222224689999999999888777777765 25666654
No 197
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.57 E-value=0.00016 Score=67.87 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
...+.||.|||.|..+..++...+.+|..+|.++.+++.|++.... ....-.++++..++++.+. .+.||+|++.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~-~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPE-EGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCC-CCcEeEEEehH
Confidence 3568999999999999998877789999999999999999854322 1134457788888877653 47999999999
Q ss_pred ccccccchH--hHhhe
Q psy11730 369 TIYSVANYN--KLLTV 382 (496)
Q Consensus 369 ~l~~~~~~~--~~~~~ 382 (496)
++-|+.|.+ .++++
T Consensus 131 ~lghLTD~dlv~fL~R 146 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKR 146 (218)
T ss_dssp -GGGS-HHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHH
Confidence 999996654 45554
No 198
>KOG2361|consensus
Probab=97.55 E-value=9.9e-05 Score=69.73 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=69.9
Q ss_pred HHHHHHHhCCCCCCC---eEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 277 DLLNFIKDNVAVDKL---SVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~---~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
-|...+-+...+..+ +|||||||.|.....+.+..+ -.|+++|.|+.+++..+++.... ..++.....|+
T Consensus 56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dl 131 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDL 131 (264)
T ss_pred HHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceec
Confidence 344444444433322 699999999999999988655 47999999999999988764221 23343344443
Q ss_pred CCcc--c-cCCCceeEEEEccccccc--cchHhHhhee--eecCCC
Q psy11730 351 GSLS--A-VIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 351 ~~~~--~-~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~ 389 (496)
.... . ...+++|+|++..+|.-+ .....+++.+ ++.|+|
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG 177 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG 177 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence 3221 1 125789999998888777 3344445442 555655
No 199
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.54 E-value=0.00035 Score=67.74 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=63.9
Q ss_pred HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
..+....+.+ .++|||||+|+|.++..+++..+ .+++..|+ |+.++.+++ ..++++..+|+.+ +.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f~-~~-- 156 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFFD-PL-- 156 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TTT-CC--
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHHh-hh--
Confidence 4455555554 56899999999999999999888 68999999 777776654 5689999999872 22
Q ss_pred CCceeEEEEccccccccchHh
Q psy11730 358 HSKFDIILTSETIYSVANYNK 378 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~~~ 378 (496)
.. +|+|+...++|++++.+.
T Consensus 157 P~-~D~~~l~~vLh~~~d~~~ 176 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDWSDEDC 176 (241)
T ss_dssp SS-ESEEEEESSGGGS-HHHH
T ss_pred cc-ccceeeehhhhhcchHHH
Confidence 34 999999999999976554
No 200
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00016 Score=72.87 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=71.1
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
.|..|||+.||.|.+++.+|+.|...|+++|+||.+++.++++...+. ....+..+++|..++.... +.+|.|+++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~-~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL-GVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc-ccCCEEEeCC
Confidence 488999999999999999999999779999999999999887654433 2233889999998887642 8899999988
Q ss_pred ccccccchHhHhh
Q psy11730 369 TIYSVANYNKLLT 381 (496)
Q Consensus 369 ~l~~~~~~~~~~~ 381 (496)
+-....-++..+.
T Consensus 265 p~~a~~fl~~A~~ 277 (341)
T COG2520 265 PKSAHEFLPLALE 277 (341)
T ss_pred CCcchhhHHHHHH
Confidence 8654433444443
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00012 Score=69.25 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=61.3
Q ss_pred CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+++++|||+|.|..++.+|-..+ .+|+-+|....-+.+.+.-..+. +.+|++++++.+|++...... ||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~-~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQ-YDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhccccccc-CcEEEeeh
Confidence 68999999999999999996555 67999999998888776554443 478999999999998753222 99999854
Q ss_pred c
Q psy11730 369 T 369 (496)
Q Consensus 369 ~ 369 (496)
+
T Consensus 144 v 144 (215)
T COG0357 144 V 144 (215)
T ss_pred c
Confidence 3
No 202
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00031 Score=67.28 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHhCCC-CCCCeEEEecCcCCHHHHHHHH-ccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLM-NGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~-~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
+|....+ .+|.+|||.|.|+|.++.+|+. .++ ++|+..|+-++.++.|+++.... +...++++..+|+.+...
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~-- 160 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGID-- 160 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEecccccccc--
Confidence 3444444 4589999999999999999995 455 89999999999999999876543 234448889999887665
Q ss_pred CCceeEEEEccc
Q psy11730 358 HSKFDIILTSET 369 (496)
Q Consensus 358 ~~~fD~Ii~~~~ 369 (496)
...||.|+...+
T Consensus 161 ~~~vDav~LDmp 172 (256)
T COG2519 161 EEDVDAVFLDLP 172 (256)
T ss_pred ccccCEEEEcCC
Confidence 348999998643
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.49 E-value=0.00011 Score=66.70 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.....+.|||+|+|.++..++.. +.+|++|+.++.-...|.++.. .....|+.++.+|+....+ +..|+|+|.
T Consensus 31 va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~---v~g~~n~evv~gDA~~y~f---e~ADvvicE 103 (252)
T COG4076 31 VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLH---VPGDVNWEVVVGDARDYDF---ENADVVICE 103 (252)
T ss_pred HhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCC---CCCCcceEEEecccccccc---cccceeHHH
Confidence 34578999999999999995554 8899999999999998887641 2357899999999887764 568898884
No 204
>PRK10742 putative methyltransferase; Provisional
Probab=97.46 E-value=0.0002 Score=68.75 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=64.1
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---c-CC--CCceEEEecccCCccccCCCceeEEE
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---T-DN--LEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---~-~~--~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
+|||+-+|+|..++.++..|.. |+++|-|+.+....+....... . .. ..+++++++|..+.......+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999999876 9999999999887765543311 0 11 25789999997776544345899999
Q ss_pred Eccccccc
Q psy11730 366 TSETIYSV 373 (496)
Q Consensus 366 ~~~~l~~~ 373 (496)
+.+++.+-
T Consensus 170 lDPMfp~~ 177 (250)
T PRK10742 170 LDPMFPHK 177 (250)
T ss_pred ECCCCCCC
Confidence 99998885
No 205
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00018 Score=68.82 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=66.2
Q ss_pred CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEEEc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIILTS 367 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~ 367 (496)
..+||||||.|.+...+|+..+ ..++|||+....+..|.++....+ ..|+.+++.|+..+.... +++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 5899999999999999999988 789999999999988887764443 349999999988765432 4599999998
Q ss_pred cccccc
Q psy11730 368 ETIYSV 373 (496)
Q Consensus 368 ~~l~~~ 373 (496)
.+=-|.
T Consensus 127 FPDPWp 132 (227)
T COG0220 127 FPDPWP 132 (227)
T ss_pred CCCCCC
Confidence 886666
No 206
>PLN02823 spermine synthase
Probab=97.39 E-value=0.00053 Score=69.62 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
..++||.||+|.|..+..+++.. ..+|+.+|+++++++.|++...... ....++++++.+|.........++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 56799999999999999988854 4789999999999999987754321 123579999999987765444578999999
Q ss_pred c
Q psy11730 367 S 367 (496)
Q Consensus 367 ~ 367 (496)
.
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 6
No 207
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.00071 Score=68.83 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCC----------------------------------------eE
Q psy11730 277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAA----------------------------------------HV 315 (496)
Q Consensus 277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~----------------------------------------~v 315 (496)
.|+.-|....+ ..+..++|==||+|.+.+.+|..+.. .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 34444444433 44679999999999999998877641 47
Q ss_pred EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730 316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS 372 (496)
Q Consensus 316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~ 372 (496)
+|+|+++.+++.|+.++.. .+...-|+|.++|+..+.... +.+|+||||+|+--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~--AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGe 311 (381)
T COG0116 258 YGSDIDPRHIEGAKANARA--AGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYGE 311 (381)
T ss_pred EEecCCHHHHHHHHHHHHh--cCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcch
Confidence 8999999999999987643 346778999999999988754 89999999999753
No 208
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00028 Score=62.64 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=56.5
Q ss_pred CCCCeEEEecCcCCHHHHHHHH-----ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLM-----NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD 362 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~-----~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 362 (496)
.....|+|+|||-|.++..|+. ....+|+|||.++..++.+.++..........++.+..++..+... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 3567999999999999999998 6567999999999999988877654432223556666665544322 34555
Q ss_pred EEEEccc
Q psy11730 363 IILTSET 369 (496)
Q Consensus 363 ~Ii~~~~ 369 (496)
++++-.+
T Consensus 102 ~~vgLHa 108 (141)
T PF13679_consen 102 ILVGLHA 108 (141)
T ss_pred EEEEeec
Confidence 6665433
No 209
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0005 Score=68.99 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-ccCCcc
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG-DWGSLS 354 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~-d~~~~~ 354 (496)
.|++.+.+.... .|..|||=-||||.+.+.+.-.| .+++|+|++..|+.-|+.+....+ .....++.. |+..++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lp 259 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCC
Confidence 566777666554 48899999999999999955555 589999999999999887764443 456666666 999888
Q ss_pred ccCCCceeEEEEcccccc
Q psy11730 355 AVIHSKFDIILTSETIYS 372 (496)
Q Consensus 355 ~~~~~~fD~Ii~~~~l~~ 372 (496)
.. ...+|.|++.+++--
T Consensus 260 l~-~~~vdaIatDPPYGr 276 (347)
T COG1041 260 LR-DNSVDAIATDPPYGR 276 (347)
T ss_pred CC-CCccceEEecCCCCc
Confidence 54 457999999988643
No 210
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.33 E-value=0.00029 Score=68.36 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC------CCc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI------HSK 360 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~ 360 (496)
+.++|||||+++|+-++.+|..-+ .+|+.+|.+++..+.|++..... +...+|+++.+++.+..... .++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 577999999999999999987532 68999999999999888765443 34579999999987754321 268
Q ss_pred eeEEEEcc
Q psy11730 361 FDIILTSE 368 (496)
Q Consensus 361 fD~Ii~~~ 368 (496)
||+|+...
T Consensus 157 fD~iFiDa 164 (247)
T PLN02589 157 FDFIFVDA 164 (247)
T ss_pred ccEEEecC
Confidence 99999953
No 211
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.31 E-value=0.00063 Score=63.56 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=64.9
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCce-EEEecccCCccc
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKC-KFYHGDWGSLSA 355 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v-~~~~~d~~~~~~ 355 (496)
+++.|.+...-.+.+|||||||||.++..+|+..+ -+....|+++.............. ..|+ ..+..|+.+..-
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCCCC
Confidence 45555555444444799999999999999999877 577788988877533222111111 1111 112333332211
Q ss_pred c-------CCCceeEEEEcccccccc--chHhHhhe--eeecCCC
Q psy11730 356 V-------IHSKFDIILTSETIYSVA--NYNKLLTV--WCLFPTH 389 (496)
Q Consensus 356 ~-------~~~~fD~Ii~~~~l~~~~--~~~~~~~~--~~l~p~~ 389 (496)
. ....||.|++..++|-.+ ..+.+|+. ..|.|++
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence 1 246899999999998884 44556654 2444443
No 212
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.31 E-value=0.00032 Score=70.75 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHc--------cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN--------GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH 347 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~--------~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~ 347 (496)
.+++++.+.... .+.+|||-+||+|.+...+... ....++|+|+++.++..|+.+....+ ....+..+..
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~ 111 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEE
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-cccccccccc
Confidence 344445444443 4668999999999999987763 44789999999999988775432211 1233445777
Q ss_pred cccCCccccC-CCceeEEEEccccccc
Q psy11730 348 GDWGSLSAVI-HSKFDIILTSETIYSV 373 (496)
Q Consensus 348 ~d~~~~~~~~-~~~fD~Ii~~~~l~~~ 373 (496)
+|....+... ...||+|++++|+-..
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred cccccccccccccccccccCCCCcccc
Confidence 7755444332 4689999999998776
No 213
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00023 Score=66.83 Aligned_cols=101 Identities=22% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~ 367 (496)
.|.+|||.+.|-|+.++.++++|+.+|+-++.++..++.|+.+-.-.+.. ...+.++.+|..++.... +++||+|+-.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHHHHhcCCccccceEeeC
Confidence 58999999999999999999999999999999999999887654333322 237899999988765443 6789999987
Q ss_pred cccccccc-h--HhHhhe--eeecCCCC
Q psy11730 368 ETIYSVAN-Y--NKLLTV--WCLFPTHT 390 (496)
Q Consensus 368 ~~l~~~~~-~--~~~~~~--~~l~p~~~ 390 (496)
++=....- + +.+..+ ++|.|++.
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGr 240 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGR 240 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence 76444322 0 112222 26777775
No 214
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.25 E-value=0.00045 Score=61.01 Aligned_cols=58 Identities=28% Similarity=0.276 Sum_probs=46.2
Q ss_pred eEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~ 352 (496)
.|||||||.|.++..+++.++. +|+++|+++.+++.++++...++ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999988874 89999999999998887643322 3457777776554
No 215
>KOG1661|consensus
Probab=97.24 E-value=0.0012 Score=61.19 Aligned_cols=121 Identities=20% Similarity=0.091 Sum_probs=79.3
Q ss_pred ccCceeeecchHHHHHHHHhCCC---CCCCeEEEecCcCCHHHHHHHHc-cC--CeEEEEeCCHHHHHHhcCcccccc--
Q psy11730 265 YEGGYKIWECTFDLLNFIKDNVA---VDKLSVLDVGCGAGLLGLYTLMN-GA--AHVSFQDYNQEVIESLTLPNILMN-- 336 (496)
Q Consensus 265 ~~~~~~~~~~~~~l~~~l~~~~~---~~~~~VLDlGcGtG~~~~~la~~-~~--~~v~giD~s~~~i~~a~~~~~~~~-- 336 (496)
...||.+..++..+-..+.+.+. .+|-+.||+|+|||+++..++.. +. ..++|||.-++.++.++++..+.-
T Consensus 55 q~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~ 134 (237)
T KOG1661|consen 55 QKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT 134 (237)
T ss_pred cccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC
Confidence 33455555555555444444432 46889999999999999998853 33 234999999999999887743221
Q ss_pred -----cCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCC
Q psy11730 337 -----TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHT 390 (496)
Q Consensus 337 -----~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~ 390 (496)
.....++.++.+|....... ..+||.|.+..... ..++.+++ .|.|++.
T Consensus 135 ~e~~~~~~~~~l~ivvGDgr~g~~e-~a~YDaIhvGAaa~--~~pq~l~d--qL~~gGr 188 (237)
T KOG1661|consen 135 SESSSKLKRGELSIVVGDGRKGYAE-QAPYDAIHVGAAAS--ELPQELLD--QLKPGGR 188 (237)
T ss_pred chhhhhhccCceEEEeCCccccCCc-cCCcceEEEccCcc--ccHHHHHH--hhccCCe
Confidence 12346788888887765543 57999999974432 34555555 3445443
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.23 E-value=0.0011 Score=63.78 Aligned_cols=86 Identities=21% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Ii~~ 367 (496)
...++||||+|.|..+..++. ...+|+++|.|..|....+++.. +++. .+|.+. +.+||+|.|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg~----------~vl~~~~w~~~----~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKGF----------TVLDIDDWQQT----DFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCCC----------eEEehhhhhcc----CCceEEEeeh
Confidence 456899999999999999765 45679999999999988777642 2222 223321 4689999999
Q ss_pred cccccccchHhHhhe--eeecCCC
Q psy11730 368 ETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
.++-.-.++..+++. ..+.|.|
T Consensus 159 NvLDRc~~P~~LL~~i~~~l~p~G 182 (265)
T PF05219_consen 159 NVLDRCDRPLTLLRDIRRALKPNG 182 (265)
T ss_pred hhhhccCCHHHHHHHHHHHhCCCC
Confidence 999988888888875 2566644
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.18 E-value=0.0019 Score=64.87 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=63.3
Q ss_pred cchHHHHHHHHhCC--------CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceE
Q psy11730 273 ECTFDLLNFIKDNV--------AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCK 344 (496)
Q Consensus 273 ~~~~~l~~~l~~~~--------~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~ 344 (496)
.+.+.|.+.+.... ..+|.++|||||++|.++..|+++|. .|+|||.++ |..... ..++|.
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L~---------~~~~V~ 255 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSLM---------DTGQVE 255 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhhh---------CCCCEE
Confidence 34556666655443 24688999999999999999999987 899999554 333222 356788
Q ss_pred EEecccCCccccCCCceeEEEEccccccc
Q psy11730 345 FYHGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 345 ~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
.+.+|.-..... .+.+|.|+|.-+.+..
T Consensus 256 h~~~d~fr~~p~-~~~vDwvVcDmve~P~ 283 (357)
T PRK11760 256 HLRADGFKFRPP-RKNVDWLVCDMVEKPA 283 (357)
T ss_pred EEeccCcccCCC-CCCCCEEEEecccCHH
Confidence 888886655432 5789999998664443
No 218
>KOG2899|consensus
Probab=97.16 E-value=0.00097 Score=63.11 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=40.1
Q ss_pred CCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~ 332 (496)
..++.+|||||-+|.+++.+|+. +...|.|+|+.+..|..|+++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~ 102 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI 102 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence 46789999999999999999985 5578999999999999998874
No 219
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.13 E-value=0.0013 Score=65.30 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCeEEEecCcCC-HHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC-c---cccCCCceeEE
Q psy11730 290 KLSVLDVGCGAG-LLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-L---SAVIHSKFDII 364 (496)
Q Consensus 290 ~~~VLDlGcGtG-~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-~---~~~~~~~fD~I 364 (496)
.-++||||||.- .+.+..++....+++|+|+++..++.|+++. ..|.....+|++....-.. + .....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv-~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENV-ERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHH-HHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHH-HhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 458999999975 5566666767789999999999999998765 3443467788887653222 1 11124689999
Q ss_pred EEccccccccc
Q psy11730 365 LTSETIYSVAN 375 (496)
Q Consensus 365 i~~~~l~~~~~ 375 (496)
+|++++|.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 99999987643
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.07 E-value=0.00081 Score=72.87 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC---------CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc----cc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA---------AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL----SA 355 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~---------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~~ 355 (496)
.+.+|||.|||+|.+...++.... ..++|+|+++.++..++.+....+ ...+.+...|.... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---~~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---LLEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---CCCceeeecccccccccccc
Confidence 346899999999999999876432 568999999999998876542221 11233444442211 11
Q ss_pred cCCCceeEEEEccccccc
Q psy11730 356 VIHSKFDIILTSETIYSV 373 (496)
Q Consensus 356 ~~~~~fD~Ii~~~~l~~~ 373 (496)
...+.||+|++|+|+--.
T Consensus 108 ~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 108 SYLDLFDIVITNPPYGRL 125 (524)
T ss_pred cccCcccEEEeCCCcccc
Confidence 113589999999999865
No 221
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.04 E-value=0.00096 Score=66.19 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred CeEEEecCcCCHH----HHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccc---------------------------
Q psy11730 291 LSVLDVGCGAGLL----GLYTLMNG-----AAHVSFQDYNQEVIESLTLPNIL--------------------------- 334 (496)
Q Consensus 291 ~~VLDlGcGtG~~----~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~--------------------------- 334 (496)
-+|+..||+||-= ++.+.+.. .-+|+|+|+|+.+++.|++-.-.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 4899999999953 33333322 24799999999999998865211
Q ss_pred -cccCCCCceEEEecccCCccccCCCceeEEEEcccccccc--chHhHhhee--eecCCC
Q psy11730 335 -MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTH 389 (496)
Q Consensus 335 -~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~ 389 (496)
........|+|...|+.+.+....+.||+|+|..++.|++ ....++... .|.|+|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 0011225788999998774433357899999999999984 345555542 566665
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.00 E-value=0.00088 Score=63.23 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=56.3
Q ss_pred HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccc------cCCCCceEEEecccC
Q psy11730 280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMN------TDNLEKCKFYHGDWG 351 (496)
Q Consensus 280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~------~~~~~~v~~~~~d~~ 351 (496)
..+.+...+. +..++|||||.|...+.+|.. +..+++|||+.+...+.|........ .....++.+.++|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 3333444444 779999999999999887754 44779999999998877654321111 123568888888877
Q ss_pred CccccC--CCceeEEEEccccccccchHhH
Q psy11730 352 SLSAVI--HSKFDIILTSETIYSVANYNKL 379 (496)
Q Consensus 352 ~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~ 379 (496)
+..... -...|+|+++.....-+-...+
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L 141 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCFDPDLNLAL 141 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT-HHHHHHH
T ss_pred ccHhHhhhhcCCCEEEEeccccCHHHHHHH
Confidence 643211 1468999998876554433333
No 223
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0024 Score=63.14 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCC-CCceEEEecccCCccccCCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDN-LEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
..++||-||-|.|..+..+++... .+++.+|++++.++.+++....-..+. .++++++..|.-+........||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999998875 899999999999999999876654333 489999999988776643458999998
Q ss_pred cc
Q psy11730 367 SE 368 (496)
Q Consensus 367 ~~ 368 (496)
..
T Consensus 156 D~ 157 (282)
T COG0421 156 DS 157 (282)
T ss_pred cC
Confidence 43
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0023 Score=60.80 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=67.6
Q ss_pred ecchHHHHHHHHhC-CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cc
Q psy11730 272 WECTFDLLNFIKDN-VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GD 349 (496)
Q Consensus 272 ~~~~~~l~~~l~~~-~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d 349 (496)
...++.|...+... +.++|+.+||||+-||.++..+.++|+++|+|+|..-.++..--+. .+++..+. .+
T Consensus 61 SRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN 132 (245)
T COG1189 61 SRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------DPRVIVLERTN 132 (245)
T ss_pred ccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------CCcEEEEecCC
Confidence 44567777777775 4678999999999999999999999999999999998777653222 23333332 33
Q ss_pred cCCcccc-CCCceeEEEEcccccccc
Q psy11730 350 WGSLSAV-IHSKFDIILTSETIYSVA 374 (496)
Q Consensus 350 ~~~~~~~-~~~~fD~Ii~~~~l~~~~ 374 (496)
+..+... ..+..|+|++.-++..+.
T Consensus 133 ~r~l~~~~~~~~~d~~v~DvSFISL~ 158 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVIDVSFISLK 158 (245)
T ss_pred hhhCCHHHcccCCCeEEEEeehhhHH
Confidence 4433321 134688999988777663
No 225
>KOG2793|consensus
Probab=96.87 E-value=0.0031 Score=60.85 Aligned_cols=115 Identities=22% Similarity=0.335 Sum_probs=76.7
Q ss_pred ceeeecchHHHHHHHHhCCC-------CC-----CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHH--hcCccc
Q psy11730 268 GYKIWECTFDLLNFIKDNVA-------VD-----KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES--LTLPNI 333 (496)
Q Consensus 268 ~~~~~~~~~~l~~~l~~~~~-------~~-----~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~--a~~~~~ 333 (496)
...+|...-.+++.+..... +. ..+|||+|+|+|.-++.++......|.-.|...-+... ....+.
T Consensus 53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~ 132 (248)
T KOG2793|consen 53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNN 132 (248)
T ss_pred eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhh
Confidence 34457777666666655432 22 33599999999999999888788889888876655432 222222
Q ss_pred ccccCCCCceEEEecccCCccccC--CCc-eeEEEEccccccccchHhHhhe
Q psy11730 334 LMNTDNLEKCKFYHGDWGSLSAVI--HSK-FDIILTSETIYSVANYNKLLTV 382 (496)
Q Consensus 334 ~~~~~~~~~v~~~~~d~~~~~~~~--~~~-fD~Ii~~~~l~~~~~~~~~~~~ 382 (496)
.........+.+...+|...+... ... ||+|++.+++|+....+.+.+.
T Consensus 133 ~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~t 184 (248)
T KOG2793|consen 133 IALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKT 184 (248)
T ss_pred hhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHH
Confidence 222223347777777777654321 234 9999999999999888887765
No 226
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.72 E-value=0.0019 Score=69.47 Aligned_cols=82 Identities=10% Similarity=-0.016 Sum_probs=64.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILT 366 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~ 366 (496)
.+..+||||||.|.+...+|+..+ ..++|+|++...+..+.++.... +..|+.++..|+..+... .++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 466899999999999999999888 68999999999888876654332 367888888887644322 2578999998
Q ss_pred ccccccc
Q psy11730 367 SETIYSV 373 (496)
Q Consensus 367 ~~~l~~~ 373 (496)
+.+=-|.
T Consensus 424 ~FPDPWp 430 (506)
T PRK01544 424 LFPDPWI 430 (506)
T ss_pred ECCCCCC
Confidence 8776665
No 227
>KOG1709|consensus
Probab=96.72 E-value=0.0054 Score=57.16 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=83.1
Q ss_pred ecchHH--HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 272 WECTFD--LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 272 ~~~~~~--l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
|+..++ +++.+. .+|.+||+||-|.|+...++.++.+..-+-|+.+++.+...+.... ....||.++.+.
T Consensus 86 WEtpiMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw----~ek~nViil~g~ 157 (271)
T KOG1709|consen 86 WETPIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW----REKENVIILEGR 157 (271)
T ss_pred hhhHHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc----ccccceEEEecc
Confidence 766442 344443 6899999999999999999888888888899999999998887653 346799999999
Q ss_pred cCCcccc-CCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730 350 WGSLSAV-IHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 350 ~~~~~~~-~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
|++.... +++.||-|+-.---.+..+...+.+. ..|.|++
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCc
Confidence 9986543 36889999986655666666655553 3566664
No 228
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.54 E-value=0.0041 Score=60.52 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=62.3
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCccccCCC-ceeEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLSAVIHS-KFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~-~fD~I 364 (496)
.+.++||=||-|.|..+..+.+.. ..+|+.+|+++.+++.|++....... ...++++++.+|.........+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 368899999999999999988776 48999999999999999876443222 2467999999998776654455 89999
Q ss_pred EEccc
Q psy11730 365 LTSET 369 (496)
Q Consensus 365 i~~~~ 369 (496)
+....
T Consensus 155 i~D~~ 159 (246)
T PF01564_consen 155 IVDLT 159 (246)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 98443
No 229
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.51 E-value=0.012 Score=62.51 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
.++.+|||++||.|.=+..++... ...|+++|+++..+..++++.... +..|+.+...|...+.....+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 468899999999999999998754 268999999999998887665433 357888888888766544357899999
Q ss_pred Eccccccc----cchHh------------------Hhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730 366 TSETIYSV----ANYNK------------------LLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR 419 (496)
Q Consensus 366 ~~~~l~~~----~~~~~------------------~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (496)
...+..-. .+++. ++.. + .+.|+|. ++|..-.....+....+.+|...++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~---LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT---LVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE---EEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 75554411 22211 1111 2 5566654 66666555555667778888777664
No 230
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.51 E-value=0.0022 Score=67.11 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=64.4
Q ss_pred hHHHHHHHHhCCCC--CC---CeEEEecCcCCHHHHHHHHccCCeEE--EEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730 275 TFDLLNFIKDNVAV--DK---LSVLDVGCGAGLLGLYTLMNGAAHVS--FQDYNQEVIESLTLPNILMNTDNLEKCKFYH 347 (496)
Q Consensus 275 ~~~l~~~l~~~~~~--~~---~~VLDlGcGtG~~~~~la~~~~~~v~--giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~ 347 (496)
+..-++.|.+.+.. .+ +.+||+|||+|.++-+|..++...+. .-|..+.++.+|.++.+- .+.
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp----------a~~ 167 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP----------AMI 167 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc----------hhh
Confidence 33345555555543 32 36899999999999999998874332 336677778777665311 111
Q ss_pred cc--cCCccccCCCceeEEEEccccccccchHhHh-he--eeecCCC
Q psy11730 348 GD--WGSLSAVIHSKFDIILTSETIYSVANYNKLL-TV--WCLFPTH 389 (496)
Q Consensus 348 ~d--~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~-~~--~~l~p~~ 389 (496)
+- -..++++ ++.||+|.|..++......+.++ -+ ++|.|+|
T Consensus 168 ~~~~s~rLPfp-~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 168 GVLGSQRLPFP-SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred hhhccccccCC-ccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 22 1234443 79999999988877664444332 22 4666665
No 231
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.50 E-value=0.002 Score=47.51 Aligned_cols=43 Identities=30% Similarity=0.294 Sum_probs=32.4
Q ss_pred cCCCCCCCchhhhcccCCCCCCCc-cceEecCCCCccccccCCCCC
Q psy11730 149 DYEVPIYFQDDLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGT 193 (496)
Q Consensus 149 d~~~P~~f~~d~~~~~~~~~~p~~-~w~~iG~~gs~T~lH~D~~~~ 193 (496)
...+|. ..++++.+++....++ +|++||+.+|.|++|+|+++.
T Consensus 5 l~~lP~--~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~ 48 (57)
T smart00558 5 LAKLPF--KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL 48 (57)
T ss_pred hhhCCC--cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe
Confidence 345664 5567777765444444 999999999999999999884
No 232
>KOG2730|consensus
Probab=96.49 E-value=0.0029 Score=59.07 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=68.4
Q ss_pred ecchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 272 WECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
|-.....+..|..... .....|+|..||.|..++..|..++ .|++||+++.-+..|+.++...+ -..+|+|+++|
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD 151 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGD 151 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec--CCceeEEEech
Confidence 4445555555555432 2456899999999999999888876 79999999999999988765544 34599999999
Q ss_pred cCCccccC---CCceeEEEEccc
Q psy11730 350 WGSLSAVI---HSKFDIILTSET 369 (496)
Q Consensus 350 ~~~~~~~~---~~~fD~Ii~~~~ 369 (496)
+.++-..+ ...+|+|+.+++
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCC
Confidence 88764322 123566666544
No 233
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.46 E-value=0.0046 Score=61.18 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=59.9
Q ss_pred hHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730 275 TFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351 (496)
Q Consensus 275 ~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~ 351 (496)
...++..|.... ....++|||+|||.|.-..++... ...+++++|.|+.|++.++.-..... .............
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhc
Confidence 334555555554 367889999999999877665543 34789999999999998765432111 1111111111111
Q ss_pred CccccCCCceeEEEEccccccccc
Q psy11730 352 SLSAVIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 352 ~~~~~~~~~fD~Ii~~~~l~~~~~ 375 (496)
+... ....|+|+++.+|..+++
T Consensus 96 ~~~~--~~~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 96 DFLP--FPPDDLVIASYVLNELPS 117 (274)
T ss_pred cccc--CCCCcEEEEehhhhcCCc
Confidence 1111 223499999999999977
No 234
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.34 E-value=0.0074 Score=59.80 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=59.8
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEcccc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETI 370 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l 370 (496)
+|+|+.||.|.+++.+...|...|.++|+++.+++..+.+.. + .++.+|+.++.... ...+|+|+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~--------~-~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP--------N-KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC--------C-CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 689999999999999888898889999999999998776541 1 14667777765432 3579999999988
Q ss_pred ccccc
Q psy11730 371 YSVAN 375 (496)
Q Consensus 371 ~~~~~ 375 (496)
..++.
T Consensus 73 q~fS~ 77 (275)
T cd00315 73 QPFSI 77 (275)
T ss_pred hhhhH
Confidence 87743
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.34 E-value=0.0089 Score=56.04 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCeEEEecCcCCHHH----HHHHH---ccC---CeEEEEeCCHHHHHHhcCcccccc-----------------cC----
Q psy11730 290 KLSVLDVGCGAGLLG----LYTLM---NGA---AHVSFQDYNQEVIESLTLPNILMN-----------------TD---- 338 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~----~~la~---~~~---~~v~giD~s~~~i~~a~~~~~~~~-----------------~~---- 338 (496)
.-+|+-.||+||-=. +.+.+ ... -+|+|+|+|+.+++.|++-.-... .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 348999999999533 33333 112 389999999999999876421111 00
Q ss_pred ----CCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhe--eeecCCC
Q psy11730 339 ----NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV--WCLFPTH 389 (496)
Q Consensus 339 ----~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~--~~l~p~~ 389 (496)
...+|+|...|+.+ .....+.||+|+|-.++.++... ..+++. ..|.|+|
T Consensus 112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp E-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred EChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence 11488999999888 22226899999999999998544 334443 2455554
No 236
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=96.24 E-value=0.003 Score=63.95 Aligned_cols=40 Identities=33% Similarity=0.740 Sum_probs=30.6
Q ss_pred chhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCC
Q psy11730 431 PLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN 470 (496)
Q Consensus 431 p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~ 470 (496)
..+++++|||+||+|.||||...+.+.|+.+|+.|...+.
T Consensus 175 ~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~ 214 (319)
T PF08007_consen 175 VEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTW 214 (319)
T ss_dssp SEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBH
T ss_pred eEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCch
Confidence 4678999999999999999999999999999998776653
No 237
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.20 E-value=0.0092 Score=56.35 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=55.0
Q ss_pred EEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730 293 VLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371 (496)
Q Consensus 293 VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~ 371 (496)
|.||||-=|.++.+|++.+. .+++++|+++..++.|+++.... +...++++..+|..+.... .+..|+|+..++--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence 68999999999999999998 67999999999999998776543 3567899999996543321 23478888766644
Q ss_pred c
Q psy11730 372 S 372 (496)
Q Consensus 372 ~ 372 (496)
.
T Consensus 78 ~ 78 (205)
T PF04816_consen 78 E 78 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>PHA01634 hypothetical protein
Probab=96.15 E-value=0.0069 Score=51.72 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730 286 VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 286 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~ 331 (496)
+.+.+++|+|||.+.|..+++++.+|++.|++++.++......+..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999888763
No 239
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.14 E-value=0.029 Score=48.29 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=52.4
Q ss_pred EEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC--ccccCCCceeEEEEcc
Q psy11730 293 VLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS--LSAVIHSKFDIILTSE 368 (496)
Q Consensus 293 VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Ii~~~ 368 (496)
++|+|||+|... .++.... ..++|+|+++.++..++..... . ....+.+...+... ++......||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999987 4344433 4799999999999884443311 1 11116778887765 3432114899994444
Q ss_pred ccccccchHhHhh
Q psy11730 369 TIYSVANYNKLLT 381 (496)
Q Consensus 369 ~l~~~~~~~~~~~ 381 (496)
.+++.. ....+.
T Consensus 128 ~~~~~~-~~~~~~ 139 (257)
T COG0500 128 VLHLLP-PAKALR 139 (257)
T ss_pred ehhcCC-HHHHHH
Confidence 444444 444443
No 240
>KOG2915|consensus
Probab=96.12 E-value=0.02 Score=55.29 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=65.9
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDII 364 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~I 364 (496)
.+|..|||-|+|+|.++.++++.-+ ++++-.|+.+.-.+.|.+....- +-..++++.+-|+....+.. ...+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCccccccccceE
Confidence 3688999999999999999988644 89999999998888887765433 35789999999988765543 4679999
Q ss_pred EEcccccc
Q psy11730 365 LTSETIYS 372 (496)
Q Consensus 365 i~~~~l~~ 372 (496)
+...+-.|
T Consensus 182 FLDlPaPw 189 (314)
T KOG2915|consen 182 FLDLPAPW 189 (314)
T ss_pred EEcCCChh
Confidence 98665444
No 241
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.04 E-value=0.02 Score=56.20 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCeEEEecCcCCH----HHHHHHHcc------CCeEEEEeCCHHHHHHhcCcccc-----cc------------c-----
Q psy11730 290 KLSVLDVGCGAGL----LGLYTLMNG------AAHVSFQDYNQEVIESLTLPNIL-----MN------------T----- 337 (496)
Q Consensus 290 ~~~VLDlGcGtG~----~~~~la~~~------~~~v~giD~s~~~i~~a~~~~~~-----~~------------~----- 337 (496)
.-+|+-+||+||- +++.|.+.+ .-+|+|+|+|..+++.|+.-.-. .+ .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3489999999994 444444444 25799999999999998864322 11 0
Q ss_pred ----CCCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730 338 ----DNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH 389 (496)
Q Consensus 338 ----~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~ 389 (496)
.....|.|-..|+..-.. ..+.||+|+|-+++.++... ..++... .|.|+|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 012477888888776553 26789999999998888543 3344431 444544
No 242
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.024 Score=53.12 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=64.4
Q ss_pred ceeeecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceE
Q psy11730 268 GYKIWECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCK 344 (496)
Q Consensus 268 ~~~~~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~ 344 (496)
+|+ ..+++.|.+...+..-+. +..|+||||--|.++..+++... ..|+|+|+.+-- ...+|.
T Consensus 24 gyR-SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~ 88 (205)
T COG0293 24 GYR-SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVI 88 (205)
T ss_pred ccc-chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCce
Confidence 444 567788888888875555 68999999999999999887655 349999988632 356799
Q ss_pred EEecccCCcccc------CC-CceeEEEEccc
Q psy11730 345 FYHGDWGSLSAV------IH-SKFDIILTSET 369 (496)
Q Consensus 345 ~~~~d~~~~~~~------~~-~~fD~Ii~~~~ 369 (496)
++++|+..-... .. ..+|+|+|..+
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 999997754332 12 34799998544
No 243
>KOG1331|consensus
Probab=96.00 E-value=0.0042 Score=60.47 Aligned_cols=117 Identities=20% Similarity=0.149 Sum_probs=81.5
Q ss_pred cCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730 266 EGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF 345 (496)
Q Consensus 266 ~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~ 345 (496)
.+.+..|+.....+... + .+..++|+|||.|-++.. .....++|.|++...+.-+++.+. ...
T Consensus 27 ~tr~~~Wp~v~qfl~~~----~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------~~~ 89 (293)
T KOG1331|consen 27 ATRAAPWPMVRQFLDSQ----P-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------DNV 89 (293)
T ss_pred ccccCccHHHHHHHhcc----C-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------cee
Confidence 34455577655333332 1 388999999999987543 244689999999999988876542 145
Q ss_pred EecccCCccccCCCceeEEEEccccccccchHh---Hhhe--eeecCCCCCcccEEEeeccC
Q psy11730 346 YHGDWGSLSAVIHSKFDIILTSETIYSVANYNK---LLTV--WCLFPTHTPKDLLKVTSAEG 402 (496)
Q Consensus 346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~---~~~~--~~l~p~~~~~~~~~~~~~~~ 402 (496)
..+|+..++.. ..+||.+++.-++||+..... ++++ .++.|++.. ++++.+...
T Consensus 90 ~~ad~l~~p~~-~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~--lvyvwa~~q 148 (293)
T KOG1331|consen 90 CRADALKLPFR-EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNA--LVYVWALEQ 148 (293)
T ss_pred ehhhhhcCCCC-CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCce--EEEEehhhc
Confidence 77888888776 689999999999999965443 3333 378887753 566655443
No 244
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.93 E-value=0.011 Score=56.61 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=49.1
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc-C-----CCCceEEEecccCCccccCCCceeEE
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT-D-----NLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~-~-----~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
.+|||.=||.|.-++.++..|. +|+++|-|+-+....+.-...... . ...+++++++|..+.....+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999988764 799999999886654422111111 1 12589999999888665447899999
Q ss_pred EEccccccc
Q psy11730 365 LTSETIYSV 373 (496)
Q Consensus 365 i~~~~l~~~ 373 (496)
...+++.+-
T Consensus 156 Y~DPMFp~~ 164 (234)
T PF04445_consen 156 YFDPMFPER 164 (234)
T ss_dssp EE--S----
T ss_pred EECCCCCCc
Confidence 999998774
No 245
>KOG1269|consensus
Probab=95.90 E-value=0.0076 Score=61.76 Aligned_cols=98 Identities=23% Similarity=0.198 Sum_probs=78.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
.+..++|+|||.|......+..+...++|+|+++..+..+...+.... ...+..++.+++...++. +..||.+.+.+
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fe-dn~fd~v~~ld 186 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFE-DNTFDGVRFLE 186 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCC-ccccCcEEEEe
Confidence 455899999999999999999988999999999999888776654433 233444477777777665 78999999999
Q ss_pred ccccccchHhHhhe--eeecCCC
Q psy11730 369 TIYSVANYNKLLTV--WCLFPTH 389 (496)
Q Consensus 369 ~l~~~~~~~~~~~~--~~l~p~~ 389 (496)
+..|.++...++++ ..+.|++
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCc
Confidence 99999999999987 2555554
No 246
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.72 E-value=0.092 Score=49.70 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=62.6
Q ss_pred ceeeecchH-HHHHHHHhCC---CCC-CCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHH----HHHhcCcccccc
Q psy11730 268 GYKIWECTF-DLLNFIKDNV---AVD-KLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEV----IESLTLPNILMN 336 (496)
Q Consensus 268 ~~~~~~~~~-~l~~~l~~~~---~~~-~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~----i~~a~~~~~~~~ 336 (496)
.|+.|.--. .|+..|.... .++ |.+||-||..+|..-..++.. + .+.|+|++.|+.. +..|+++
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----- 121 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----- 121 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----
Confidence 688897744 5666666543 344 789999999999999998864 4 2789999999954 5555544
Q ss_pred cCCCCceEEEecccCCccccC--CCceeEEEEccc
Q psy11730 337 TDNLEKCKFYHGDWGSLSAVI--HSKFDIILTSET 369 (496)
Q Consensus 337 ~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~~~ 369 (496)
.|+-.+..|+.....+. -+.+|+|++.-+
T Consensus 122 ----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 122 ----PNIIPILEDARHPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp ----TTEEEEES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred ----CceeeeeccCCChHHhhcccccccEEEecCC
Confidence 47888889887655432 368999998644
No 247
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.67 E-value=0.034 Score=52.04 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=58.1
Q ss_pred ecchH--HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 272 WECTF--DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 272 ~~~~~--~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
||..- .++++|... .++..|.|+|||-+.++..+. ....|...|+-. .+-.+..+|
T Consensus 55 WP~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva------------------~n~~Vtacd 112 (219)
T PF05148_consen 55 WPVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA------------------PNPRVTACD 112 (219)
T ss_dssp SSS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH----S---EEEEESS-------------------SSTTEEES-
T ss_pred CCCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc--cCceEEEeeccC------------------CCCCEEEec
Confidence 76643 467777643 235689999999999986532 223588888753 122357899
Q ss_pred cCCccccCCCceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCCc
Q psy11730 350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGGK 404 (496)
Q Consensus 350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~ 404 (496)
+..+|.. +++.|++|+..+|--. |+..++.+ ++|.|+| ++.+.....+.
T Consensus 113 ia~vPL~-~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G----~L~IAEV~SRf 163 (219)
T PF05148_consen 113 IANVPLE-DESVDVAVFCLSLMGT-NWPDFIREANRVLKPGG----ILKIAEVKSRF 163 (219)
T ss_dssp TTS-S---TT-EEEEEEES---SS--HHHHHHHHHHHEEEEE----EEEEEEEGGG-
T ss_pred CccCcCC-CCceeEEEEEhhhhCC-CcHHHHHHHHheeccCc----EEEEEEecccC
Confidence 9888876 7999999998777554 55555554 4677765 56666655443
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.63 E-value=0.044 Score=52.43 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=66.3
Q ss_pred ccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCce
Q psy11730 265 YEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKC 343 (496)
Q Consensus 265 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v 343 (496)
+.-++.+.+.+..-+.++.+...+.|++||=|| ---..+++++.. .+++|+-+|+.+.++++.++.+...+ . ++
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g---l-~i 94 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERGDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG---L-PI 94 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------E
T ss_pred cccccccHHHHHHHHHHHHhcCcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC---C-ce
Confidence 344566688888889999999999999999999 445566666654 44899999999999999877664443 2 38
Q ss_pred EEEecccCC-ccccCCCceeEEEEccccccccchHhHhh
Q psy11730 344 KFYHGDWGS-LSAVIHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 344 ~~~~~d~~~-~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
+.++.|+.+ +|....+.||++++.++. ...-...++.
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPy-T~~G~~LFls 132 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPY-TPEGLKLFLS 132 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---S-SHHHHHHHHH
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCC-CHHHHHHHHH
Confidence 889999775 455456899999998884 3333333443
No 249
>KOG3045|consensus
Probab=95.58 E-value=0.04 Score=52.93 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=65.4
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI 357 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 357 (496)
+++.|... .....|.|+|||-+.++. .-...|+..|+-+ .+-+++.+|+.+++..
T Consensus 171 ii~~ik~r--~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------~~~~V~~cDm~~vPl~- 225 (325)
T KOG3045|consen 171 IIRKIKRR--PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------VNERVIACDMRNVPLE- 225 (325)
T ss_pred HHHHHHhC--cCceEEEecccchhhhhh----ccccceeeeeeec------------------CCCceeeccccCCcCc-
Confidence 45555543 245689999999999865 3335688888542 2345688899998876
Q ss_pred CCceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCC
Q psy11730 358 HSKFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGG 403 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~ 403 (496)
+++.|++++..++. -.|+..++++ ++|.|+| ++++..+...
T Consensus 226 d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG----~l~IAEv~SR 268 (325)
T KOG3045|consen 226 DESVDVAVFCLSLM-GTNLADFIKEANRILKPGG----LLYIAEVKSR 268 (325)
T ss_pred cCcccEEEeeHhhh-cccHHHHHHHHHHHhccCc----eEEEEehhhh
Confidence 79999998866653 2566777766 4677766 5777665543
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.53 E-value=0.017 Score=53.19 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=40.4
Q ss_pred cchHHHHHHHHhCCCC---CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHH
Q psy11730 273 ECTFDLLNFIKDNVAV---DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQE 323 (496)
Q Consensus 273 ~~~~~l~~~l~~~~~~---~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~ 323 (496)
.+.+.|.+.+....-+ .+.+||||||+.|.++..+++.+ ...|+|+|+.+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3456777777776523 34799999999999999999988 589999999876
No 251
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.41 E-value=0.053 Score=53.22 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=67.7
Q ss_pred CCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCce-EEEecccCCcccc--CCCceeE
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKC-KFYHGDWGSLSAV--IHSKFDI 363 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v-~~~~~d~~~~~~~--~~~~fD~ 363 (496)
.-+||||.||.|..-+-+....+ ..|...|+|+.-++..++.....+ ..++ +|.++|+-+.... .....++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCCCCE
Confidence 45999999999999998776544 689999999999998776554332 4455 9999997765332 2456899
Q ss_pred EEEccccccccchHhHh
Q psy11730 364 ILTSETIYSVANYNKLL 380 (496)
Q Consensus 364 Ii~~~~l~~~~~~~~~~ 380 (496)
++.+..++.++|-+.+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~ 229 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVR 229 (311)
T ss_pred EEEecchhhCCcHHHHH
Confidence 99999999998866544
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.25 E-value=0.044 Score=55.04 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=68.1
Q ss_pred CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCc----ccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLP----NILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~----~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
..+||=+|-|-|.-...+.+.. ..+|+-+|++|+|++.++++ ....+....++++++..|+-+....-.+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4589999999999999988876 58999999999999998854 222334567899999999877665445789999
Q ss_pred EEccccccccchHh
Q psy11730 365 LTSETIYSVANYNK 378 (496)
Q Consensus 365 i~~~~l~~~~~~~~ 378 (496)
|...+=...+...+
T Consensus 370 IVDl~DP~tps~~r 383 (508)
T COG4262 370 IVDLPDPSTPSIGR 383 (508)
T ss_pred EEeCCCCCCcchhh
Confidence 98655433333333
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.16 E-value=0.055 Score=54.09 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=70.2
Q ss_pred HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730 277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354 (496)
Q Consensus 277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 354 (496)
.|++.+.+... .++..++|.=||.|..+..+++.. ..+|+|+|.++.+++.++++... ...++.++++++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFANFF 82 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHHHH
Confidence 34444444443 357799999999999999998764 48999999999999998876422 2458999999988765
Q ss_pred ccC----CCceeEEEEccc--cccccchHhH
Q psy11730 355 AVI----HSKFDIILTSET--IYSVANYNKL 379 (496)
Q Consensus 355 ~~~----~~~fD~Ii~~~~--l~~~~~~~~~ 379 (496)
... ..++|.|+++.= -+.+.+.+.=
T Consensus 83 ~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RG 113 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLGVSSPQLDDPERG 113 (305)
T ss_pred HHHHhcCCCcccEEEEeccCCHhhcCCCCCC
Confidence 432 257999998433 3333444443
No 254
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.83 E-value=0.038 Score=52.34 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=41.2
Q ss_pred cchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhc
Q psy11730 273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLT 329 (496)
Q Consensus 273 ~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~ 329 (496)
+-...|++.+......+|..|||--||+|..+.++.+. ..+.+|+|++++.++.|+
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhc
Confidence 34556777777666667999999999999999994444 467999999999998875
No 255
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.78 E-value=0.095 Score=49.37 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=62.3
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+.++.||||-=|++..+|.+.+. ..+++.|+++..++.|.++....+ ...++++..+|....... ...+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~~-~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLEL-EDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccCc-cCCcCEEEEe
Confidence 355699999999999999999888 789999999999999876654433 577888888887443322 4579998886
Q ss_pred cccc
Q psy11730 368 ETIY 371 (496)
Q Consensus 368 ~~l~ 371 (496)
++--
T Consensus 93 GMGG 96 (226)
T COG2384 93 GMGG 96 (226)
T ss_pred CCcH
Confidence 6643
No 256
>KOG1501|consensus
Probab=94.58 E-value=0.034 Score=56.98 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=44.6
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d 349 (496)
.|||||+|||.+++.+++.|+..|++++.=..|.+.|++-- .+.+-..+|+++.-.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~--~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIM--HKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHH--hcCCCccceeeeccc
Confidence 69999999999999999999999999999999998877532 222345566666543
No 257
>PRK11524 putative methyltransferase; Provisional
Probab=94.55 E-value=0.061 Score=53.54 Aligned_cols=58 Identities=19% Similarity=-0.077 Sum_probs=48.9
Q ss_pred chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~ 332 (496)
-...|++.|......+|..|||-.||+|..+++ |..-..+.+|+|++++.++.|+++.
T Consensus 193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 345778887777777899999999999999999 5555578999999999999998874
No 258
>KOG4058|consensus
Probab=94.52 E-value=0.049 Score=47.86 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA 355 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 355 (496)
.+..+.+|||+|.|.+-+.+++.|...-+|+++++-.+.+++..+.... -.....|..-|+-+...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKVDL 136 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhccc
Confidence 3457999999999999999999998889999999999999887766544 34566777777666554
No 259
>PRK00536 speE spermidine synthase; Provisional
Probab=94.46 E-value=0.16 Score=49.77 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii 365 (496)
..+.++||=||.|-|..+..+++.. .+|+.+|+++++++.+++...... ....++++++.. +. ....++||+||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~---~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL---DLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh---hccCCcCCEEE
Confidence 3567899999999999999988775 499999999999999998554332 245677877752 21 11136899999
Q ss_pred Ecc
Q psy11730 366 TSE 368 (496)
Q Consensus 366 ~~~ 368 (496)
...
T Consensus 145 vDs 147 (262)
T PRK00536 145 CLQ 147 (262)
T ss_pred EcC
Confidence 874
No 260
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.34 E-value=0.081 Score=49.84 Aligned_cols=87 Identities=21% Similarity=0.167 Sum_probs=61.0
Q ss_pred ecchHHHHHHHHhCCCC-C----CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE
Q psy11730 272 WECTFDLLNFIKDNVAV-D----KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY 346 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~-~----~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~ 346 (496)
-.++..|++||...... . .-++|||||=+...... ..+.-.|+.||+++. .-.+.
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~------------------~~~I~ 88 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ------------------HPGIL 88 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC------------------CCCce
Confidence 45678899999887532 2 24899999976655443 234445999999861 11236
Q ss_pred ecccCCcccc--CCCceeEEEEccccccccchHh
Q psy11730 347 HGDWGSLSAV--IHSKFDIILTSETIYSVANYNK 378 (496)
Q Consensus 347 ~~d~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~ 378 (496)
+.|+-+.+.+ ..+.||+|.++.+|.+++++..
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~ 122 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQ 122 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCHHH
Confidence 6676665432 3578999999999999998866
No 261
>KOG3987|consensus
Probab=94.11 E-value=0.0083 Score=55.52 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE-ecccCCccccCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY-HGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~fD~Ii~ 366 (496)
..+.++||||+|.|-++..++ -...+|++.++|..|....++++-. ++ ..+|.+. +-+||+|.|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~yn----------Vl~~~ew~~t----~~k~dli~c 175 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNYN----------VLTEIEWLQT----DVKLDLILC 175 (288)
T ss_pred CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCCc----------eeeehhhhhc----CceeehHHH
Confidence 346799999999999999855 3346799999999999998876521 11 1222221 457999999
Q ss_pred ccccccccchHhHhhe-e-eecCCCC
Q psy11730 367 SETIYSVANYNKLLTV-W-CLFPTHT 390 (496)
Q Consensus 367 ~~~l~~~~~~~~~~~~-~-~l~p~~~ 390 (496)
-..+----++-++++- | .+.|..+
T Consensus 176 lNlLDRc~~p~kLL~Di~~vl~psng 201 (288)
T KOG3987|consen 176 LNLLDRCFDPFKLLEDIHLVLAPSNG 201 (288)
T ss_pred HHHHHhhcChHHHHHHHHHHhccCCC
Confidence 7776655555555543 2 4555443
No 262
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.09 E-value=0.19 Score=49.39 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=73.2
Q ss_pred HHHHHHhCCC-----CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcC--cc-cccc-------------
Q psy11730 278 LLNFIKDNVA-----VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL--PN-ILMN------------- 336 (496)
Q Consensus 278 l~~~l~~~~~-----~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~--~~-~~~~------------- 336 (496)
+++.|.+..+ ..+.+||==|||.|.++..+|..|. .+.|.|.|--|+-..+- +. .+.+
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 4444554433 2356999999999999999999987 69999999999643221 00 0011
Q ss_pred ---------------------cCCCCceEEEecccCCccccC--CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730 337 ---------------------TDNLEKCKFYHGDWGSLSAVI--HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH 389 (496)
Q Consensus 337 ---------------------~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~ 389 (496)
.....++....+|+.++-... .+.||+|+....+-..+|.-..++.. +|.|+|
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence 012346777778877765542 36899999886665556666666542 566655
No 263
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.89 E-value=0.081 Score=44.06 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEe
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQD 319 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD 319 (496)
+.....|||||+|.+..-|.+.|.. -.|+|
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD 87 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP-GWGID 87 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC-ccccc
Confidence 4568999999999999999988863 56666
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.83 E-value=0.15 Score=49.12 Aligned_cols=81 Identities=22% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
..+|+|||||.=-+++......+ ..++|+|++..+++....-... ...+.++...|...-+. ....|+.+..=
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~----l~~~~~~~v~Dl~~~~~--~~~~DlaLllK 179 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV----LGVPHDARVRDLLSDPP--KEPADLALLLK 179 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH----TT-CEEEEEE-TTTSHT--TSEESEEEEET
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh----hCCCcceeEeeeeccCC--CCCcchhhHHH
Confidence 78999999999999988665443 6899999999999987755322 23456666667654432 57899999987
Q ss_pred ccccccch
Q psy11730 369 TIYSVANY 376 (496)
Q Consensus 369 ~l~~~~~~ 376 (496)
+++.+...
T Consensus 180 ~lp~le~q 187 (251)
T PF07091_consen 180 TLPCLERQ 187 (251)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 77777443
No 265
>KOG4589|consensus
Probab=93.54 E-value=0.37 Score=44.29 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred cchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-
Q psy11730 273 ECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG- 348 (496)
Q Consensus 273 ~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~- 348 (496)
.+++.|++.=.++.-+ ++.+|||+||-.|.++..+.++- + +.|.|||+-.- ...+.++++.+
T Consensus 52 RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~ 117 (232)
T KOG4589|consen 52 RSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGN 117 (232)
T ss_pred hhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCccccccc
Confidence 3455555544444433 47899999999999999977654 4 78999996431 13445555555
Q ss_pred ccCCccc-------cCCCceeEEEEcc
Q psy11730 349 DWGSLSA-------VIHSKFDIILTSE 368 (496)
Q Consensus 349 d~~~~~~-------~~~~~fD~Ii~~~ 368 (496)
|+.+... .++...|+|+|..
T Consensus 118 dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 118 DVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred ccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 4443221 1256899999854
No 266
>PRK13699 putative methylase; Provisional
Probab=93.53 E-value=0.14 Score=49.23 Aligned_cols=58 Identities=12% Similarity=-0.016 Sum_probs=46.4
Q ss_pred chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~ 332 (496)
-...|++.+......+|..|||-.||+|..+.++.+. ...++|+|++++.++.+.++.
T Consensus 148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHH
Confidence 3456777666655567899999999999999995554 457999999999999887764
No 267
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.40 E-value=0.12 Score=52.38 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=56.1
Q ss_pred EEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS 372 (496)
Q Consensus 293 VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~ 372 (496)
|+||.||.|.+++-+.+.|...+.++|+++.+++..+.+.. + .++.+|+.++.......+|+++..++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 68999999999999888898888899999999988765431 1 33567777765322346899999888777
Q ss_pred cc
Q psy11730 373 VA 374 (496)
Q Consensus 373 ~~ 374 (496)
++
T Consensus 72 fS 73 (315)
T TIGR00675 72 FS 73 (315)
T ss_pred cc
Confidence 64
No 268
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.24 E-value=0.17 Score=51.15 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=56.5
Q ss_pred CCCeEEEecCcCCHHHHHHHHc-----cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEE--EecccCCcccc-----
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN-----GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF--YHGDWGSLSAV----- 356 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~-----~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~--~~~d~~~~~~~----- 356 (496)
++..|+|+|||+|.-+..|... ....++++|+|.++++.+..+... ...+.+.+ +.+|+.+....
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~---~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL---GNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh---ccCCCeEEEEEEecHHHHHhhccccc
Confidence 4568999999999987665442 235799999999999988776531 12344554 77887653211
Q ss_pred CCCceeEEEE-ccccccccchH
Q psy11730 357 IHSKFDIILT-SETIYSVANYN 377 (496)
Q Consensus 357 ~~~~fD~Ii~-~~~l~~~~~~~ 377 (496)
......+|+. ..+|..++..+
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPE 174 (319)
T ss_pred ccCCccEEEEeCccccCCCHHH
Confidence 1234566666 45777775544
No 269
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.03 E-value=0.083 Score=53.15 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=55.5
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC-ceeEEEEcccc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS-KFDIILTSETI 370 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Ii~~~~l 370 (496)
+|+||.||.|.+++-+.+.|...|.++|+++.+++..+.+.. ....+|+.++....-. .+|+++..++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEeccCC
Confidence 689999999999999999999899999999999988776541 6678888877642112 59999999888
Q ss_pred ccccc
Q psy11730 371 YSVAN 375 (496)
Q Consensus 371 ~~~~~ 375 (496)
.-++.
T Consensus 72 Q~fS~ 76 (335)
T PF00145_consen 72 QGFSI 76 (335)
T ss_dssp TTTST
T ss_pred ceEec
Confidence 77743
No 270
>KOG2078|consensus
Probab=92.97 E-value=0.13 Score=52.89 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=59.6
Q ss_pred eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
+|..-+..-........-.|..|.|+.||.|-+++.+++.+ +.|++-|+++++++..+.+.. .|--...++.+..+|+
T Consensus 231 YWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~-lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 231 YWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIK-LNKVDPSAIEIFNMDA 308 (495)
T ss_pred EeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcc-ccccchhheeeecccH
Confidence 48765544333333333468899999999999999988877 899999999999999876543 3333345577788776
Q ss_pred CCcc
Q psy11730 351 GSLS 354 (496)
Q Consensus 351 ~~~~ 354 (496)
.++.
T Consensus 309 ~~Fl 312 (495)
T KOG2078|consen 309 KDFL 312 (495)
T ss_pred HHHh
Confidence 6554
No 271
>KOG1227|consensus
Probab=92.94 E-value=0.041 Score=53.89 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCCeEEEecCcCCHHHH-HHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGAGLLGL-YTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~-~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+..|.|+.+|.|++++ ++...|++.|+++|.++..++..++.+..++. .....++.+|-... .+....|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~--~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNP--KPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhcccccc--Cccccchheeec
Confidence 46789999999999999 88899999999999999999987766533321 11222222322111 114556666654
Q ss_pred cccccccchHhHhheeeecCCCC
Q psy11730 368 ETIYSVANYNKLLTVWCLFPTHT 390 (496)
Q Consensus 368 ~~l~~~~~~~~~~~~~~l~p~~~ 390 (496)
..-..-..+....+ .|.|.++
T Consensus 270 LlPSse~~W~~A~k--~Lk~egg 290 (351)
T KOG1227|consen 270 LLPSSEQGWPTAIK--ALKPEGG 290 (351)
T ss_pred cccccccchHHHHH--HhhhcCC
Confidence 33333333333333 4566655
No 272
>KOG2671|consensus
Probab=92.92 E-value=0.1 Score=52.08 Aligned_cols=86 Identities=19% Similarity=0.072 Sum_probs=63.0
Q ss_pred CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhc--Cccccccc----CCCCceEEEecccCCccccCCCcee
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLT--LPNILMNT----DNLEKCKFYHGDWGSLSAVIHSKFD 362 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~--~~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~fD 362 (496)
+|+.|+|=--|||.+...+|..| +.|+|.|++-.|+...+ ..++..|. ....-+.++.+|....+......||
T Consensus 208 pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 58899999999999999966666 57999999999987322 22333332 1344677888888876654456899
Q ss_pred EEEEccccccccc
Q psy11730 363 IILTSETIYSVAN 375 (496)
Q Consensus 363 ~Ii~~~~l~~~~~ 375 (496)
.|+|.+++---..
T Consensus 287 aIvcDPPYGVRe~ 299 (421)
T KOG2671|consen 287 AIVCDPPYGVREG 299 (421)
T ss_pred EEEeCCCcchhhh
Confidence 9999999754433
No 273
>KOG1663|consensus
Probab=92.68 E-value=0.25 Score=46.86 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=58.6
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSK 360 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~ 360 (496)
.+++++||||.=||+-++.+|..-+ ++|+++|++++..+.+..... ..+....|++++++..+.... ..+.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--LAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--hccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4789999999999999999887666 799999999999988743321 234567899999886543221 1468
Q ss_pred eeEEEE
Q psy11730 361 FDIILT 366 (496)
Q Consensus 361 fD~Ii~ 366 (496)
||+++.
T Consensus 150 fDfaFv 155 (237)
T KOG1663|consen 150 FDFAFV 155 (237)
T ss_pred eeEEEE
Confidence 999998
No 274
>KOG2352|consensus
Probab=92.49 E-value=0.36 Score=50.69 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=73.6
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
.+...|........-++|-+|||.=.++..+-+.|...|+.+|+|+-.++....++.. ......+..+|+..+.+.
T Consensus 36 ~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 36 SLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQLVFE 111 (482)
T ss_pred HHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc----CCcceEEEEecchhccCC
Confidence 3444444443323349999999999999999999999999999999999988877642 346778888998888876
Q ss_pred CCCceeEEEEccccccc
Q psy11730 357 IHSKFDIILTSETIYSV 373 (496)
Q Consensus 357 ~~~~fD~Ii~~~~l~~~ 373 (496)
+++||+|+.-+.+.++
T Consensus 112 -dESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 112 -DESFDIVIDKGTLDAL 127 (482)
T ss_pred -CcceeEEEecCccccc
Confidence 7999999998888877
No 275
>KOG3178|consensus
Probab=92.12 E-value=0.31 Score=49.07 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=65.7
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETI 370 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l 370 (496)
...+|+|.|.|..+..+.. .+.+|-+++.....+..++.... ..|..+.+|+-.-. ..-|+|+.-+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~----P~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDT----PKGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------CCcceecccccccC----CCcCeEEEEeec
Confidence 5899999999999999988 55679999999999887665431 34777778865432 234699999999
Q ss_pred ccccchH--hHhhe-eeecCCCC
Q psy11730 371 YSVANYN--KLLTV-WCLFPTHT 390 (496)
Q Consensus 371 ~~~~~~~--~~~~~-~~l~p~~~ 390 (496)
||+.|-+ +++++ |.-+|+++
T Consensus 247 hdwtDedcvkiLknC~~sL~~~G 269 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGG 269 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCC
Confidence 9996654 46666 44455544
No 276
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.01 E-value=0.19 Score=49.94 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=84.5
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDI 363 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~ 363 (496)
+.++..|||+++|.|.=+..+++... +.|++.|++..-+...+.+.... +..++.....|........ ...||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccccccccccch
Confidence 34688999999999999999887544 79999999999998877665433 4677888877766653221 346999
Q ss_pred EEEccccccc------cchHh---------H-------hhe-e-ee----cCCCCCcccEEEeeccCCcccccccchhhH
Q psy11730 364 ILTSETIYSV------ANYNK---------L-------LTV-W-CL----FPTHTPKDLLKVTSAEGGKQRDEAITWFSI 415 (496)
Q Consensus 364 Ii~~~~l~~~------~~~~~---------~-------~~~-~-~l----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (496)
|+...+..-. ++... + ++. + .+ .|++. ++|..-.....+....+.+|..
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~---lvYsTCS~~~eENE~vV~~fl~ 236 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR---LVYSTCSLSPEENEEVVEKFLK 236 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE---EEEEESHHHGGGTHHHHHHHHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe---EEEEeccHHHHHHHHHHHHHHH
Confidence 9985544333 11111 1 111 1 44 45554 6777666666667778888877
Q ss_pred hcCC
Q psy11730 416 IYPR 419 (496)
Q Consensus 416 ~~~~ 419 (496)
.++.
T Consensus 237 ~~~~ 240 (283)
T PF01189_consen 237 RHPD 240 (283)
T ss_dssp HSTS
T ss_pred hCCC
Confidence 6654
No 277
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.62 E-value=0.35 Score=49.19 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=59.8
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CC-ceeEEEEcc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HS-KFDIILTSE 368 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-~fD~Ii~~~ 368 (496)
.+++||.||.|.+.+-+...|..-+.++|+++.+++.-+.+.. ...+...|+.++.... .. .+|+|+..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~--------~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP--------HGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC--------CCceeechHhhcChhhccccCCCEEEeCC
Confidence 4799999999999999999999889999999999988665542 1445666666554321 12 789999999
Q ss_pred ccccccc
Q psy11730 369 TIYSVAN 375 (496)
Q Consensus 369 ~l~~~~~ 375 (496)
+.+.++.
T Consensus 76 PCQ~FS~ 82 (328)
T COG0270 76 PCQDFSI 82 (328)
T ss_pred CCcchhh
Confidence 9988843
No 278
>KOG3115|consensus
Probab=91.23 E-value=0.15 Score=47.28 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=44.5
Q ss_pred CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc----cCCCCceEEEecccCC
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN----TDNLEKCKFYHGDWGS 352 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~----~~~~~~v~~~~~d~~~ 352 (496)
-.+.|||||-|.+.+.|+-..+ .-+.|.++-....++.+.+..... .+...|+.+++.+.-.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 3689999999999999998888 568999988877777666533222 1235666666665443
No 279
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.22 E-value=0.78 Score=42.75 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=65.1
Q ss_pred ceeeecchH-HHHHHHHhCC---CCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730 268 GYKIWECTF-DLLNFIKDNV---AVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLE 341 (496)
Q Consensus 268 ~~~~~~~~~-~l~~~l~~~~---~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~ 341 (496)
.|+.|+.-. .|+..|.+.. +++ |++||-||+-+|.....++..-. +.|+||+.|+.+....-.-. ..-+
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-----~~R~ 124 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-----EKRP 124 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-----HhCC
Confidence 488898744 4555555543 344 78999999999999998887544 78999999998755432211 1234
Q ss_pred ceEEEecccCCccccC--CCceeEEEEc
Q psy11730 342 KCKFYHGDWGSLSAVI--HSKFDIILTS 367 (496)
Q Consensus 342 ~v~~~~~d~~~~~~~~--~~~fD~Ii~~ 367 (496)
|+-.+.+|+.....+. -+..|+|+..
T Consensus 125 Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 125 NIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CceeeecccCCcHHhhhhcccccEEEEe
Confidence 6777888877654432 3568888875
No 280
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.74 E-value=0.48 Score=50.87 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-----AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
.+.++|.+.+.+ ...+|+|-.||+|.+....++.. -..++|.|.++.....|+-+....+... ++...++|-
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dt 250 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDT 250 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--ccccccccc
Confidence 344444444433 35599999999998888765532 2568999999999998887654433111 344455553
Q ss_pred CCcccc----CCCceeEEEEccccc
Q psy11730 351 GSLSAV----IHSKFDIILTSETIY 371 (496)
Q Consensus 351 ~~~~~~----~~~~fD~Ii~~~~l~ 371 (496)
..-+.. ..+.||+|++++++.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCC
Confidence 333322 136799999999986
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.08 E-value=0.59 Score=44.38 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=60.3
Q ss_pred hHHHHHHHHhCCC-CC--CCeEEEecCcCCHHHHHH-HHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730 275 TFDLLNFIKDNVA-VD--KLSVLDVGCGAGLLGLYT-LMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 275 ~~~l~~~l~~~~~-~~--~~~VLDlGcGtG~~~~~l-a~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~ 350 (496)
...|+++|.+.-+ +. +-++||||.|.--+--.+ ...+.-..+|.|+++..++.|+... ..|......++.....=
T Consensus 61 ih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii-~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 61 IHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII-SANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH-HcCcchhhheeEEeccC
Confidence 4467788776543 33 347899987754332222 2344467999999999999877543 23333344444444321
Q ss_pred CCccc----cCCCceeEEEEccccccccc
Q psy11730 351 GSLSA----VIHSKFDIILTSETIYSVAN 375 (496)
Q Consensus 351 ~~~~~----~~~~~fD~Ii~~~~l~~~~~ 375 (496)
.+..+ ...+.||+++|++++|.-..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s~~ 168 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDSAA 168 (292)
T ss_pred ccccccccccccceeeeEecCCCcchhHH
Confidence 11111 11568999999999987643
No 282
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=90.08 E-value=0.99 Score=46.42 Aligned_cols=127 Identities=18% Similarity=0.117 Sum_probs=85.6
Q ss_pred CCCCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-C-Ccee
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-H-SKFD 362 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~fD 362 (496)
.+|.+|||+.++-|.=+..+++... ..|+++|.++.-+...+.+.... +..|+.+.+.|...++... . +.||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEecccccccccccccCcCc
Confidence 4588999999999998888887654 45799999999988877665433 4667888888876554322 2 2599
Q ss_pred EEEEccccccccch------------HhH----------hhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730 363 IILTSETIYSVANY------------NKL----------LTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP 418 (496)
Q Consensus 363 ~Ii~~~~l~~~~~~------------~~~----------~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (496)
.|+...+..-..-. +.+ ++. + .+.|+|. ++|..-.....++...+.+|....+
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~---LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV---LVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEccCCchhcCHHHHHHHHHhCC
Confidence 99986655443211 111 111 2 5556665 6777666666667778888877665
Q ss_pred CC
Q psy11730 419 RT 420 (496)
Q Consensus 419 ~~ 420 (496)
..
T Consensus 309 ~~ 310 (355)
T COG0144 309 DF 310 (355)
T ss_pred Cc
Confidence 53
No 283
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.83 E-value=0.81 Score=45.84 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCc
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSK 360 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~ 360 (496)
..++..++|.=-|.|.++..+++..+ .+|+|+|.++++++.++++... ...++.++++++.++.... ...
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHHHHHHHccCCCc
Confidence 34577999999999999999997644 8999999999999998876532 2578999999988765432 247
Q ss_pred eeEEEEc--cccccccchHhHh
Q psy11730 361 FDIILTS--ETIYSVANYNKLL 380 (496)
Q Consensus 361 fD~Ii~~--~~l~~~~~~~~~~ 380 (496)
+|.|+.. -+.+++.+.+.=|
T Consensus 94 ~dgiL~DLGvSS~Qld~~~RGF 115 (310)
T PF01795_consen 94 VDGILFDLGVSSMQLDDPERGF 115 (310)
T ss_dssp EEEEEEE-S--HHHHHTGGGSS
T ss_pred cCEEEEccccCHHHhCCCCCCC
Confidence 9999983 3444445544433
No 284
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.94 E-value=0.63 Score=47.26 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=69.2
Q ss_pred CCeEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
..+|||.=||||.=++..+..... +|+.-|+|+++++..+++...+ ...+..+++.|...+....+..||+|=..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEecCC
Confidence 779999999999999999876654 8999999999999988765333 355667777888877765567899998876
Q ss_pred ccccccchHhHhh
Q psy11730 369 TIYSVANYNKLLT 381 (496)
Q Consensus 369 ~l~~~~~~~~~~~ 381 (496)
.-...+-.+..+.
T Consensus 130 FGSPaPFlDaA~~ 142 (380)
T COG1867 130 FGSPAPFLDAALR 142 (380)
T ss_pred CCCCchHHHHHHH
Confidence 6665665666554
No 285
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=88.77 E-value=0.2 Score=41.63 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred EEecCcCCHHHHHHHHccC----CeEEEEeCCHH---HHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEE
Q psy11730 294 LDVGCGAGLLGLYTLMNGA----AHVSFQDYNQE---VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIIL 365 (496)
Q Consensus 294 LDlGcGtG~~~~~la~~~~----~~v~giD~s~~---~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii 365 (496)
||||+..|..+..+++.-. .+++++|..+. .-+..++ .....+++++.++..+..... .+++|+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~------~~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK------AGLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS------------------GGG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh------cCCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6899999999988876322 47999999995 3222222 123457999999877653322 37899999
Q ss_pred Eccc
Q psy11730 366 TSET 369 (496)
Q Consensus 366 ~~~~ 369 (496)
....
T Consensus 75 iDg~ 78 (106)
T PF13578_consen 75 IDGD 78 (106)
T ss_dssp EES-
T ss_pred ECCC
Confidence 8653
No 286
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.53 E-value=0.49 Score=46.25 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=55.8
Q ss_pred CeEEEecCcC--CHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCc--eEEEecccCCccccCC-----C
Q psy11730 291 LSVLDVGCGA--GLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK--CKFYHGDWGSLSAVIH-----S 359 (496)
Q Consensus 291 ~~VLDlGcGt--G~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~-----~ 359 (496)
+.+||||||- -.....+|+. .+ .+|+-+|+.+-.+..++.-.. ...+ ..++.+|+.+....+. +
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~-----~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA-----DNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT-----T-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc-----CCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 5899999994 2334444543 33 799999999999987665431 2234 8899999887544322 3
Q ss_pred cee-----EEEEccccccccc---hHhHhhe-eeecCCCCCcccEEEeeccC
Q psy11730 360 KFD-----IILTSETIYSVAN---YNKLLTV-WCLFPTHTPKDLLKVTSAEG 402 (496)
Q Consensus 360 ~fD-----~Ii~~~~l~~~~~---~~~~~~~-~~l~p~~~~~~~~~~~~~~~ 402 (496)
.+| .|+...++||+++ +..++.. ....|+|. .+.++....
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS---~L~ish~t~ 193 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS---YLAISHATD 193 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT----EEEEEEEB-
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc---eEEEEecCC
Confidence 355 4788999999965 4445544 24555555 455544443
No 287
>KOG2651|consensus
Probab=88.50 E-value=0.73 Score=46.82 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730 278 LLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 278 l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~ 330 (496)
|.+.+....... -..|+|+|.|-|.++.+++-.+.-.|.|||-|....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 444444433333 45899999999999999988888889999999777665543
No 288
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.40 E-value=1.1 Score=47.72 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-------------
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV------------- 356 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~------------- 356 (496)
.-+++||.||.|.+.+-+-..|...|.++|+++.+++.-+.+.. ..+...++.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~-----~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY-----CDPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC-----CCCccceeccChhhCccccccccchhhhhhh
Confidence 34899999999999999888888889999999999877554320 112233344555554321
Q ss_pred ---CCCceeEEEEcccccccc
Q psy11730 357 ---IHSKFDIILTSETIYSVA 374 (496)
Q Consensus 357 ---~~~~fD~Ii~~~~l~~~~ 374 (496)
....+|+++..++...++
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hhccCCCCCEEEEcCCCCccc
Confidence 013579999988887764
No 289
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.08 E-value=1.5 Score=43.40 Aligned_cols=89 Identities=20% Similarity=0.096 Sum_probs=67.2
Q ss_pred HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
.|++...+.+. .++...+|.=-|.|.++..+...++ ++++|+|-++.+++.|++.... ...++++++..+.++
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~----~~~r~~~v~~~F~~l 85 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE----FDGRVTLVHGNFANL 85 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc----cCCcEEEEeCcHHHH
Confidence 34444555443 4478999999999999999998876 7799999999999999887533 246899999988766
Q ss_pred cccC----CCceeEEEEccc
Q psy11730 354 SAVI----HSKFDIILTSET 369 (496)
Q Consensus 354 ~~~~----~~~fD~Ii~~~~ 369 (496)
.... .+.+|-|+...=
T Consensus 86 ~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 86 AEALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHHhcCCCceeEEEEecc
Confidence 5432 257888887433
No 290
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.02 E-value=0.38 Score=46.84 Aligned_cols=102 Identities=15% Similarity=0.254 Sum_probs=75.4
Q ss_pred cccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730 264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK 342 (496)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~ 342 (496)
+|.-||-+-+.+..-+.++....++.|+.|+=+| ---..+++++..+. ++|.-+|+.+..+.+..+-+.+.+ ..|
T Consensus 127 ~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ 202 (354)
T COG1568 127 QYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNN 202 (354)
T ss_pred hcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccc
Confidence 4445555555555566777778889999999999 77888888877665 889999999999988665554433 566
Q ss_pred eEEEecccCCc-cccCCCceeEEEEccc
Q psy11730 343 CKFYHGDWGSL-SAVIHSKFDIILTSET 369 (496)
Q Consensus 343 v~~~~~d~~~~-~~~~~~~fD~Ii~~~~ 369 (496)
+..+..|+.+. +....+.||+++..++
T Consensus 203 ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 203 IEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred hhheeehhcccChHHHHhhCCeeecCch
Confidence 77788887753 3333578999887766
No 291
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=87.72 E-value=0.59 Score=43.95 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccc------------------------------
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMN------------------------------ 336 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~------------------------------ 336 (496)
+-++.|=.||+|.+...+.-... ..|+|.|+++++++.|+++.....
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34899999999999888765433 679999999999999988754222
Q ss_pred ---------cCCCCceEEEecccCCccc----cCCCceeEEEEccccccccchHh
Q psy11730 337 ---------TDNLEKCKFYHGDWGSLSA----VIHSKFDIILTSETIYSVANYNK 378 (496)
Q Consensus 337 ---------~~~~~~v~~~~~d~~~~~~----~~~~~fD~Ii~~~~l~~~~~~~~ 378 (496)
.+......+...|+.+... ......|+|+..-++-++.+++.
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g 186 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG 186 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC
Confidence 2233456677776655211 11334799999888888866654
No 292
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.50 E-value=0.88 Score=47.12 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
+-+|||.=+|+|.=++..+.. +..+|++-|+|+++++..+++...++ ...+.+++.+.|+..+.......||+|=..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 348999999999999999876 44899999999999999877643333 222368888999887664336889999987
Q ss_pred cccccccchHhHhh
Q psy11730 368 ETIYSVANYNKLLT 381 (496)
Q Consensus 368 ~~l~~~~~~~~~~~ 381 (496)
+--...+-++..++
T Consensus 129 PfGSp~pfldsA~~ 142 (377)
T PF02005_consen 129 PFGSPAPFLDSALQ 142 (377)
T ss_dssp -SS--HHHHHHHHH
T ss_pred CCCCccHhHHHHHH
Confidence 76666666666665
No 293
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=86.91 E-value=1.5 Score=43.34 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCeEEEecCcC-CHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 290 KLSVLDVGCGA-GLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 290 ~~~VLDlGcGt-G~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
.++|+=||||. -..++.+++.. . ..|+++|+++++++.+++-.. ...+...++.|+.+|..+.... -..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~-~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA-SDLGLSKRMSFITADVLDVTYD-LKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh-hcccccCCeEEEecchhccccc-cccCCEEEE
Confidence 46999999996 66666667653 3 579999999999999875332 1123467899999998876543 368999988
Q ss_pred ccccccc-cchHhHhhe
Q psy11730 367 SETIYSV-ANYNKLLTV 382 (496)
Q Consensus 367 ~~~l~~~-~~~~~~~~~ 382 (496)
....... .+...+++.
T Consensus 199 AalVg~~~e~K~~Il~~ 215 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEH 215 (276)
T ss_dssp -TT-S----SHHHHHHH
T ss_pred hhhcccccchHHHHHHH
Confidence 6665533 466666654
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.18 E-value=1.9 Score=41.94 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC---------CeEEEEeCCHHHHHHhcCcccccc---cCCCCceE
Q psy11730 278 LLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA---------AHVSFQDYNQEVIESLTLPNILMN---TDNLEKCK 344 (496)
Q Consensus 278 l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~---------~~v~giD~s~~~i~~a~~~~~~~~---~~~~~~v~ 344 (496)
+++.+....... .-+|+|+|+|+|.++..++..-. .+++-||.|+.+.+.-+++..... .....++.
T Consensus 6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~ 85 (252)
T PF02636_consen 6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR 85 (252)
T ss_dssp HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE
T ss_pred HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc
Confidence 344444443223 35999999999999999876322 479999999999876555432210 01123344
Q ss_pred EEecccCCccccCCCceeEEEEccccccc
Q psy11730 345 FYHGDWGSLSAVIHSKFDIILTSETIYSV 373 (496)
Q Consensus 345 ~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~ 373 (496)
+ ..++.+.+ ..-+|++++.+--+
T Consensus 86 w-~~~l~~~p-----~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 86 W-LDDLEEVP-----FPGFIIANELFDAL 108 (252)
T ss_dssp E-ESSGGCS------CCEEEEEESSGGGS
T ss_pred h-hhhhhccc-----CCEEEEEeeehhcC
Confidence 4 22333221 45677788776444
No 295
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.10 E-value=1.9 Score=43.89 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc---------CCeEEEEeCCHHHHHHhcC
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG---------AAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~---------~~~v~giD~s~~~i~~a~~ 330 (496)
+++.++.......-.++|||.|.|.++.-+++.. +.++.-||.|++....-++
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 3444444444456689999999999999887632 4789999999999876443
No 296
>KOG1596|consensus
Probab=85.71 E-value=3.5 Score=39.57 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=62.5
Q ss_pred cCceeeecchH-HHHHHHHhCC---CC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHH----HHHHhcCcccc
Q psy11730 266 EGGYKIWECTF-DLLNFIKDNV---AV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQE----VIESLTLPNIL 334 (496)
Q Consensus 266 ~~~~~~~~~~~-~l~~~l~~~~---~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~----~i~~a~~~~~~ 334 (496)
.-.|++|+.-. .|+.-|..-. .+ ++.+||-||+++|..-..++.. |+ .-|++++.|+. .+..|+++
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--- 204 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--- 204 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---
Confidence 34688898733 4555555432 24 4889999999999987776653 44 67999998864 34555543
Q ss_pred cccCCCCceEEEecccCCcccc--CCCceeEEEEccc
Q psy11730 335 MNTDNLEKCKFYHGDWGSLSAV--IHSKFDIILTSET 369 (496)
Q Consensus 335 ~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii~~~~ 369 (496)
.||..+..|+.....+ +-.-.|+|++.-+
T Consensus 205 ------tNiiPIiEDArhP~KYRmlVgmVDvIFaDva 235 (317)
T KOG1596|consen 205 ------TNIIPIIEDARHPAKYRMLVGMVDVIFADVA 235 (317)
T ss_pred ------CCceeeeccCCCchheeeeeeeEEEEeccCC
Confidence 4677777776653322 1346788887544
No 297
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=84.29 E-value=0.64 Score=42.87 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=25.2
Q ss_pred chhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCC
Q psy11730 431 PLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSH 468 (496)
Q Consensus 431 p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~ 468 (496)
.+-+..++|++++||.+|-|...|.++..=+..|||.+
T Consensus 109 ~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 109 VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEec
Confidence 34456799999999999999999997665566666543
No 298
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.04 E-value=2.1 Score=44.44 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=44.5
Q ss_pred ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~ 332 (496)
|++.....+.|.-. ++.+||-|.+| |...+.++..++++|++||+|+.+...+..+.
T Consensus 21 WEDp~vD~~aL~i~---~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 21 WEDPRVDMEALNIG---PDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred cCCcHHHHHHhCCC---CCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 99988777776532 57789999765 55666668899999999999999988766553
No 299
>KOG1122|consensus
Probab=82.06 E-value=4.5 Score=41.92 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=86.3
Q ss_pred CCCCCeEEEecCcCCHHHHHHHH--ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCCCceeE
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLM--NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIHSKFDI 363 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~--~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~ 363 (496)
+.+|.+|||+.+--|.=+..+|. ...+.|+|.|.+..-+.....+.... +..|..+...|..+++ ....++||.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCcccce
Confidence 35688999999998887777765 34478999999999888777655433 3667778888877664 222348999
Q ss_pred EEEcccccc--ccchHhHh----------------he-----e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730 364 ILTSETIYS--VANYNKLL----------------TV-----W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR 419 (496)
Q Consensus 364 Ii~~~~l~~--~~~~~~~~----------------~~-----~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (496)
|+...+..- +-..++.+ ++ . .+.++|. ++|..-.....+....++|+-..++.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGv---LVYSTCSI~~~ENE~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGV---LVYSTCSITVEENEAVVDYALKKRPE 392 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcE---EEEEeeecchhhhHHHHHHHHHhCCc
Confidence 997555444 11111111 11 1 4445433 67776666666778889999888876
Q ss_pred CC
Q psy11730 420 TQ 421 (496)
Q Consensus 420 ~~ 421 (496)
..
T Consensus 393 ~k 394 (460)
T KOG1122|consen 393 VK 394 (460)
T ss_pred eE
Confidence 54
No 300
>KOG0024|consensus
Probab=75.45 E-value=3.9 Score=41.01 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCCeEEEecCcC-CHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCc
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLM-NGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~-~~~~~v~giD~s~~~i~~a~~~ 331 (496)
.|.+||=+|+|. |.++...|+ .|+.+|+.+|+++.-++.|++-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~ 213 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF 213 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh
Confidence 488999999996 998888876 5779999999999999999873
No 301
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=74.99 E-value=5.8 Score=38.85 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHcc------CCeEEEEeCC
Q psy11730 278 LLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNG------AAHVSFQDYN 321 (496)
Q Consensus 278 l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~------~~~v~giD~s 321 (496)
|+..+.+...+. +..++|+|||.|.++.++++.. ...++.||-.
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 566666666554 6689999999999999998855 3578899964
No 302
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=74.20 E-value=1.6 Score=40.91 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=27.2
Q ss_pred CchhhhccCCceeeeCCcceEEEEeeeeeEEEee
Q psy11730 430 KPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQ 463 (496)
Q Consensus 430 ~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~ 463 (496)
++..+.+++|+++|||.+|-|.+.|..+.==|.+
T Consensus 124 ~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~ 157 (209)
T COG2140 124 EARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFL 157 (209)
T ss_pred cEEEEEecCCcEEEeCCCcceEeecCCCCCEEEE
Confidence 4677788999999999999999999954433333
No 303
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.89 E-value=3.7 Score=39.76 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhc
Q psy11730 276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLT 329 (496)
Q Consensus 276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~ 329 (496)
..|+.+|.+.++. ...+++|.-||+|..++.+.. ....|+.-|+++..+...+
T Consensus 6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHH
Confidence 3577888887765 788999999999999999655 5578999999998887765
No 304
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=73.42 E-value=7 Score=39.83 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCeEEEecCcCCHHHHHHHHc--------c------C---CeEEEEeCCHHHHHHhcCcccccc--cCCCCce--EEEec
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMN--------G------A---AHVSFQDYNQEVIESLTLPNILMN--TDNLEKC--KFYHG 348 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~--------~------~---~~v~giD~s~~~i~~a~~~~~~~~--~~~~~~v--~~~~~ 348 (496)
.-+|+|+||.+|..++.+... . . -+|+..|+-..-....-+...... .....++ .-+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 448999999999999987651 0 0 267777753322211111100000 0001111 22234
Q ss_pred ccCCccccCCCceeEEEEccccccccch
Q psy11730 349 DWGSLSAVIHSKFDIILTSETIYSVANY 376 (496)
Q Consensus 349 d~~~~~~~~~~~fD~Ii~~~~l~~~~~~ 376 (496)
.+..-..+ .++.|+++|..++||++..
T Consensus 97 SFy~rLfP-~~Svh~~~Ss~alHWLS~v 123 (334)
T PF03492_consen 97 SFYGRLFP-SNSVHFGHSSYALHWLSQV 123 (334)
T ss_dssp -TTS--S--TT-EEEEEEES-TTB-SSS
T ss_pred hhhhccCC-CCceEEEEEechhhhcccC
Confidence 44443333 7899999999999999654
No 305
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=73.21 E-value=2.4 Score=41.44 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc--------------cCCC-----------C
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN--------------TDNL-----------E 341 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~--------------~~~~-----------~ 341 (496)
..+|.++||||||.-.+....|.....+|+..|+++.-++..++=..... .+.. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46788999999999888777677777899999999988874332211111 0000 1
Q ss_pred ce-EEEecccCCccccC-----CCceeEEEEccccccc-cchHhHhhe-----eeecCCCC
Q psy11730 342 KC-KFYHGDWGSLSAVI-----HSKFDIILTSETIYSV-ANYNKLLTV-----WCLFPTHT 390 (496)
Q Consensus 342 ~v-~~~~~d~~~~~~~~-----~~~fD~Ii~~~~l~~~-~~~~~~~~~-----~~l~p~~~ 390 (496)
.| .++..|+.+.+... ..+||+|++..+++.. ++.+...+. -.|.|+|.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~ 194 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGH 194 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcE
Confidence 23 26777877644321 2359999999999988 455554432 26667653
No 306
>KOG1098|consensus
Probab=72.00 E-value=3.7 Score=44.45 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=43.7
Q ss_pred cCceeeecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCH
Q psy11730 266 EGGYKIWECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQ 322 (496)
Q Consensus 266 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~ 322 (496)
+.||+ ..++|.|++.=..+..+. +..||||||-.|.+...+++.-+ .-|+|||+-+
T Consensus 21 e~Gyr-sRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 21 ELGYR-SRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred Hhchh-HHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34666 667888888777776555 67899999999999999877544 6799999765
No 307
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=71.24 E-value=5.9 Score=34.95 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=38.8
Q ss_pred eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC-ceeEEEEccc
Q psy11730 314 HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS-KFDIILTSET 369 (496)
Q Consensus 314 ~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Ii~~~~ 369 (496)
+|+|+|+.+++++.++++....+ ...++++++.+-+.+...... .+|+|+.|.=
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG 55 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLG 55 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEES
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECC
Confidence 59999999999999998875543 345899999988887765555 8999998643
No 308
>KOG3706|consensus
Probab=70.88 E-value=5.7 Score=41.59 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=30.7
Q ss_pred CchhhhccCCceeeeCCcceEEEEee------eeeEEEeecccCCCChh
Q psy11730 430 KPLELVQGPGETVFVPGGWWHVVLNL------DTTVAVTQNFCSHTNFP 472 (496)
Q Consensus 430 ~p~e~~~~~Ge~l~iP~gWwh~v~~l------~~~i~v~~~~~~~~~~~ 472 (496)
..++..++|||++|+|.|..|+-..- --|+++-+++....-++
T Consensus 379 PV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlStyqq~s~anlle 427 (629)
T KOG3706|consen 379 PVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTYQQNSWANLLE 427 (629)
T ss_pred chHHhhcCCCcEEEecCcceeeccccchhceeEEEeehhhhhhHHHHHH
Confidence 45788999999999999999987653 45555555554433333
No 309
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.75 E-value=4.8 Score=39.72 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=41.5
Q ss_pred eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730 271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~ 331 (496)
+|++...=.+.++.. .|.+|.-||+|.-. .+.+..+.+..|..||+|+..++..+.+
T Consensus 48 iwEDp~Vdmeam~~g---~ghrivtigSGGcn-~L~ylsr~Pa~id~VDlN~ahiAln~lk 104 (414)
T COG5379 48 IWEDPSVDMEAMQLG---IGHRIVTIGSGGCN-MLAYLSRAPARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred ccCCccccHHHHhcC---CCcEEEEecCCcch-HHHHhhcCCceeEEEeCCHHHHHHHHHH
Confidence 488877666666543 47789999998554 4444666778999999999998876554
No 310
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=69.65 E-value=5.4 Score=35.14 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=21.9
Q ss_pred hccCCceeeeCCcceEEEEee--eeeEEEee
Q psy11730 435 VQGPGETVFVPGGWWHVVLNL--DTTVAVTQ 463 (496)
Q Consensus 435 ~~~~Ge~l~iP~gWwh~v~~l--~~~i~v~~ 463 (496)
.+++||++++|.||.|.+.|. ++...+..
T Consensus 87 ~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~ 117 (144)
T PF00190_consen 87 RLKAGDVFVVPAGHPHWIINDGDDEALVLII 117 (144)
T ss_dssp EEETTEEEEE-TT-EEEEEECSSSSEEEEEE
T ss_pred eeecccceeeccceeEEEEcCCCCCCEEEEE
Confidence 388999999999999999999 45555444
No 311
>KOG2912|consensus
Probab=69.19 E-value=14 Score=37.09 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=50.7
Q ss_pred EEEecCcCCHHHHHH-HHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc------cCCCceeEEE
Q psy11730 293 VLDVGCGAGLLGLYT-LMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA------VIHSKFDIIL 365 (496)
Q Consensus 293 VLDlGcGtG~~~~~l-a~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~~fD~Ii 365 (496)
=+|||.|+--+--.+ +........++|+....+..|+.+..++| ..+.+.+++....+... .....||.+.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~--lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN--LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc--cccceeeEEecchhhcchhhhccCccceeeEEe
Confidence 378887765544443 33444678999999999999888776655 34555555543221111 1134699999
Q ss_pred Eccccccc
Q psy11730 366 TSETIYSV 373 (496)
Q Consensus 366 ~~~~l~~~ 373 (496)
|+++++..
T Consensus 184 cNPPFfe~ 191 (419)
T KOG2912|consen 184 CNPPFFEN 191 (419)
T ss_pred cCCchhhc
Confidence 99998765
No 312
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=68.31 E-value=3.4 Score=35.98 Aligned_cols=31 Identities=26% Similarity=0.611 Sum_probs=19.1
Q ss_pred CCceeeeCCcceEEEEeeeeeEEEeecccCCC
Q psy11730 438 PGETVFVPGGWWHVVLNLDTTVAVTQNFCSHT 469 (496)
Q Consensus 438 ~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~ 469 (496)
+-..|+||.|+||.+.++++. +|...+++..
T Consensus 83 ~~~~L~Ippg~w~~~~~~s~~-svlLv~as~~ 113 (131)
T PF05523_consen 83 PNKGLYIPPGVWHGIKNFSED-SVLLVLASEP 113 (131)
T ss_dssp TTEEEEE-TT-EEEEE---TT--EEEEEESS-
T ss_pred CCeEEEECCchhhHhhccCCC-cEEEEEcCCC
Confidence 336899999999999999777 7777777653
No 313
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=68.24 E-value=17 Score=31.49 Aligned_cols=87 Identities=17% Similarity=0.081 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV 356 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 356 (496)
+++++.... ..++|+|||-|. -..+..|++.| ..|+++|+++.-+ ...+.++..|+-+....
T Consensus 4 ~a~~ia~~~--~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~~a--------------~~g~~~v~DDif~P~l~ 66 (127)
T PF03686_consen 4 FAEYIARLN--NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPRKA--------------PEGVNFVVDDIFNPNLE 66 (127)
T ss_dssp HHHHHHHHS---SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------------STTEE---SSS--HH
T ss_pred HHHHHHHhC--CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccccc--------------ccCcceeeecccCCCHH
Confidence 455665432 345999999997 45556666677 6899999998711 13567788887765433
Q ss_pred CCCceeEEEE-ccccccccchHhHhh
Q psy11730 357 IHSKFDIILT-SETIYSVANYNKLLT 381 (496)
Q Consensus 357 ~~~~fD~Ii~-~~~l~~~~~~~~~~~ 381 (496)
.-...|+|.| .++.+..+..-.+-+
T Consensus 67 iY~~a~lIYSiRPP~El~~~il~lA~ 92 (127)
T PF03686_consen 67 IYEGADLIYSIRPPPELQPPILELAK 92 (127)
T ss_dssp HHTTEEEEEEES--TTSHHHHHHHHH
T ss_pred HhcCCcEEEEeCCChHHhHHHHHHHH
Confidence 2368999999 555555554444444
No 314
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=67.59 E-value=4.1 Score=38.00 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.8
Q ss_pred chhhhccCCceeeeCCcceEEEEeeeee
Q psy11730 431 PLELVQGPGETVFVPGGWWHVVLNLDTT 458 (496)
Q Consensus 431 p~e~~~~~Ge~l~iP~gWwh~v~~l~~~ 458 (496)
.....++||++++||.+|-|.+.|..+.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 3456789999999999999999998543
No 315
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=65.70 E-value=13 Score=36.85 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=46.0
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccc
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI 333 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~ 333 (496)
...|+..+.......+..|||--+|+|..++. |......++|+|++++-++.+.++..
T Consensus 208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~a-a~~~~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIA-AKNLGRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred hHHHHHHHHHhcCCCCCEEeecCCCCChHHHH-HHHcCCceEEEecCHHHHHHHHHHHH
Confidence 34555555555566799999999999999999 55555689999999999999887753
No 316
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=64.99 E-value=15 Score=37.47 Aligned_cols=73 Identities=15% Similarity=0.035 Sum_probs=47.8
Q ss_pred CCCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730 288 VDKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366 (496)
Q Consensus 288 ~~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~ 366 (496)
-+|++|+=+|+| .|.+++.+|+.-..+|+++|.|++-.+.|++-... .++...-.+......+.||+|+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd---------~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD---------HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc---------EEEEcCCchhhHHhHhhCcEEEE
Confidence 358888888887 47778888874448999999999999888864321 22332211111111234999998
Q ss_pred ccc
Q psy11730 367 SET 369 (496)
Q Consensus 367 ~~~ 369 (496)
.-+
T Consensus 236 tv~ 238 (339)
T COG1064 236 TVG 238 (339)
T ss_pred CCC
Confidence 666
No 317
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=61.93 E-value=6.5 Score=29.45 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.5
Q ss_pred hhhccCCceeeeCCcceEEEEeeeee
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLDTT 458 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~~~ 458 (496)
...+++||.+++|.+-+|.+.|..+.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 45689999999999999999998533
No 318
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.68 E-value=12 Score=38.45 Aligned_cols=42 Identities=31% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCeEEEecCcC-CHHHHHHHH-ccCCeEEEEeCCHHHHHHhcC
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLM-NGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~-~~~~~v~giD~s~~~i~~a~~ 330 (496)
.+.+|+=+|||. |.++..+++ .|+..|+.+|.+++-++.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 445999999997 999888776 566899999999999999987
No 319
>KOG0822|consensus
Probab=61.06 E-value=16 Score=39.08 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCCC----CCeEEEecCcCCHHHHHHHH---ccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730 277 DLLNFIKDNVAVD----KLSVLDVGCGAGLLGLYTLM---NGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH 347 (496)
Q Consensus 277 ~l~~~l~~~~~~~----~~~VLDlGcGtG~~~~~la~---~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~ 347 (496)
.+...|.+..+-. ...|+=+|.|-|-+.....+ ... -++++|+-+|.++...+..+.+ .=..+|+++.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~---~W~~~Vtii~ 427 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE---CWDNRVTIIS 427 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh---hhcCeeEEEe
Confidence 4445555553321 33688999999998776543 222 3689999999999887765533 2367899999
Q ss_pred cccCCccccCCCceeEEEEc
Q psy11730 348 GDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 348 ~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.|+.....+ ..+.|++++.
T Consensus 428 ~DMR~w~ap-~eq~DI~VSE 446 (649)
T KOG0822|consen 428 SDMRKWNAP-REQADIIVSE 446 (649)
T ss_pred ccccccCCc-hhhccchHHH
Confidence 999988743 5889999873
No 320
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=59.48 E-value=6.1 Score=40.97 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=16.5
Q ss_pred CCceeEEEEccccccccch
Q psy11730 358 HSKFDIILTSETIYSVANY 376 (496)
Q Consensus 358 ~~~fD~Ii~~~~l~~~~~~ 376 (496)
.++.++++|..++|+++..
T Consensus 160 ~~Slh~~~Ss~slHWLS~v 178 (386)
T PLN02668 160 ARSIDVFHSAFSLHWLSQV 178 (386)
T ss_pred CCceEEEEeeccceecccC
Confidence 6899999999999999643
No 321
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=58.75 E-value=2.7 Score=34.97 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.0
Q ss_pred ceEecCCCCccccccCCCCCCC
Q psy11730 174 WFVMGPARSGTGIHIDPLGTNP 195 (496)
Q Consensus 174 w~~iG~~gs~T~lH~D~~~~~~ 195 (496)
|++||..+|.|++|.|..+...
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~s 22 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSS 22 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EE
T ss_pred CEEEeCCCcCCCcEecCCCCce
Confidence 6889999999999999887774
No 322
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=55.80 E-value=24 Score=33.28 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCCCeEEEecCcCCHHHHHHHH----c-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLM----N-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~----~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 353 (496)
++++.|+|+|.=.|.-+++.|. . +.++|+|||+.-......... .....++|+++.+|-.+.
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----SHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG----G----TTEEEEES-SSST
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh----hccccCceEEEECCCCCH
Confidence 4789999999999988887764 2 337999999964443221111 112347899999986654
No 323
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=55.67 E-value=26 Score=37.88 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=50.1
Q ss_pred CCCeEEEecCcCCHHHHHHHHc---cC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc-CCccccCCCcee
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN---GA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW-GSLSAVIHSKFD 362 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~---~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD 362 (496)
++..|.|.-||+|.+.....+. +. ..++|.+..+.+...+..+...... .........+|- ..........||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-CccccCcccCCcCCCccccccccCC
Confidence 3468999999999988764431 22 4689999999998887765322110 111122222332 211111135699
Q ss_pred EEEEcccccc
Q psy11730 363 IILTSETIYS 372 (496)
Q Consensus 363 ~Ii~~~~l~~ 372 (496)
+|++++++.-
T Consensus 296 ~v~~NpPf~~ 305 (501)
T TIGR00497 296 VVVSNPPYSI 305 (501)
T ss_pred EEeecCCccc
Confidence 9999998754
No 324
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=55.35 E-value=7.8 Score=33.42 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.7
Q ss_pred hhhccCCceeeeCCcceEEEEeeee
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLDT 457 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~~ 457 (496)
++.+++||++|||.|-.|.+.|...
T Consensus 76 ~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 76 EVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred EEEecCCCEEEECCCCcEEEEcCCC
Confidence 5678999999999999999999865
No 325
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=54.10 E-value=15 Score=32.31 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=24.0
Q ss_pred EecCcCC--HHHHHHH--HccC-CeEEEEeCCHHHHHHhcCc
Q psy11730 295 DVGCGAG--LLGLYTL--MNGA-AHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 295 DlGcGtG--~~~~~la--~~~~-~~v~giD~s~~~i~~a~~~ 331 (496)
|||++.| .....++ ..+. .+|+++|.++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 3444 7899999999998877665
No 326
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=53.85 E-value=17 Score=37.53 Aligned_cols=43 Identities=23% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCCeEEEecCcC-CHHHHHHHHccC-CeEEEEeCCHHHHHHhcCc
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLMNGA-AHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~~~~-~~v~giD~s~~~i~~a~~~ 331 (496)
++.+||.+|||+ |..+..+++... .+|+++|.+++..+.++..
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 578999999988 888888887655 4699999999999887754
No 327
>KOG2798|consensus
Probab=52.47 E-value=27 Score=35.01 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHH
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVI 325 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i 325 (496)
.-+||==|||.|.++..++..|.. +-|-+.|--|+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Ml 185 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFML 185 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc-ccccHHHHHHH
Confidence 458999999999999999999984 66778877765
No 328
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.30 E-value=34 Score=29.11 Aligned_cols=63 Identities=24% Similarity=0.223 Sum_probs=43.7
Q ss_pred CCeEEEecCcCCH-HHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 290 KLSVLDVGCGAGL-LGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 290 ~~~VLDlGcGtG~-~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.++|.|+|-|-=. .+..|++.| ..|+++|+++. .+ ...+.++..|+.+.....-...|+|.|.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG-FDVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC-CcEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence 4599999998643 455556667 57999999986 11 2467788888876554334567888774
No 329
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.03 E-value=36 Score=35.42 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=53.0
Q ss_pred CeEEEecCcC-CHHHHHH-HHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCceeEEEE
Q psy11730 291 LSVLDVGCGA-GLLGLYT-LMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFDIILT 366 (496)
Q Consensus 291 ~~VLDlGcGt-G~~~~~l-a~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii~ 366 (496)
++||=||||. |...... ++.+-..|+..|-|.+.++.+.... ..+++....|+.+.... .-..+|+|++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-------~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-------GGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-------cccceeEEecccChHHHHHHHhcCCEEEE
Confidence 4789999964 4433333 5566579999999988888765432 33778888887765321 1245699887
Q ss_pred c-cccccccchHhHh
Q psy11730 367 S-ETIYSVANYNKLL 380 (496)
Q Consensus 367 ~-~~l~~~~~~~~~~ 380 (496)
. +..+++.-.+..+
T Consensus 75 ~~p~~~~~~i~ka~i 89 (389)
T COG1748 75 AAPPFVDLTILKACI 89 (389)
T ss_pred eCCchhhHHHHHHHH
Confidence 4 4444444443444
No 330
>KOG0821|consensus
Probab=51.31 E-value=24 Score=33.52 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=49.8
Q ss_pred hHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730 275 TFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352 (496)
Q Consensus 275 ~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~ 352 (496)
...+.+.|.+.. .+.+.-|.+||.|.|.++..+...+..+...++.+..++.-.+.-. .....+..+.++|+..
T Consensus 35 D~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~----EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 35 DLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLS----EAAPGKLRIHHGDVLR 109 (326)
T ss_pred hhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHh----hcCCcceEEeccccce
Confidence 345566666655 4678899999999999999999999988888887766554322111 0113355556666543
No 331
>KOG0022|consensus
Probab=50.01 E-value=26 Score=35.19 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCCeEEEecCcCCHHHHHH-HH-ccCCeEEEEeCCHHHHHHhcCcc
Q psy11730 289 DKLSVLDVGCGAGLLGLYT-LM-NGAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~l-a~-~~~~~v~giD~s~~~i~~a~~~~ 332 (496)
+|++|.=+|+|.=.++... ++ .|+.+++|||+|++-.+.|++-.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fG 237 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFG 237 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcC
Confidence 5889999999874444333 43 67799999999999999988653
No 332
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=49.23 E-value=24 Score=38.14 Aligned_cols=44 Identities=30% Similarity=0.249 Sum_probs=37.0
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~~ 331 (496)
.++.+|+=+|||. |..++..|+.....|+++|.+++.++.++..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 4688999999997 8888888775555899999999999987764
No 333
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.84 E-value=8.9 Score=38.89 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=55.2
Q ss_pred chHHHHHHHHhC-CCCCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCc--ccccccCCCCceEEEec
Q psy11730 274 CTFDLLNFIKDN-VAVDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLP--NILMNTDNLEKCKFYHG 348 (496)
Q Consensus 274 ~~~~l~~~l~~~-~~~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~--~~~~~~~~~~~v~~~~~ 348 (496)
+-+..+..++.. .+++.++|||+|.|.|.-..++-..-+ ..++-++.|+..-+....- ++.. .....+..-+..
T Consensus 97 sv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~ 175 (484)
T COG5459 97 SVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTE 175 (484)
T ss_pred HHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccch
Confidence 333444445444 357888999999998887766555444 5677788887664432111 1000 000111111222
Q ss_pred ccCCccccCCCceeEEEEccccccccchHh
Q psy11730 349 DWGSLSAVIHSKFDIILTSETIYSVANYNK 378 (496)
Q Consensus 349 d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~ 378 (496)
|-.+++ ....|++|+..+-+-+..+...
T Consensus 176 dRl~lp--~ad~ytl~i~~~eLl~d~~ek~ 203 (484)
T COG5459 176 DRLSLP--AADLYTLAIVLDELLPDGNEKP 203 (484)
T ss_pred hccCCC--ccceeehhhhhhhhccccCcch
Confidence 222222 2567888888776666655443
No 334
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=47.61 E-value=71 Score=28.51 Aligned_cols=44 Identities=25% Similarity=0.095 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeC
Q psy11730 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDY 320 (496)
Q Consensus 277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~ 320 (496)
..+++.......-..-|||+|=|+|..--.|.+..+ ..|+.+|-
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 345666665554567899999999999999888766 78888884
No 335
>KOG3924|consensus
Probab=44.45 E-value=17 Score=37.48 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCc---cccc---ccCCCCceEEEeccc
Q psy11730 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLP---NILM---NTDNLEKCKFYHGDW 350 (496)
Q Consensus 278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~---~~~~---~~~~~~~v~~~~~d~ 350 (496)
|..+..+...-++....|+|.|.|.+..+++..+. +.=+|+++....-..+..+ +... -......+..+++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 33444433334577999999999999999887655 5667777654433332221 1100 012245666777776
Q ss_pred CCcccc--CCCceeEEEEcccccccc
Q psy11730 351 GSLSAV--IHSKFDIILTSETIYSVA 374 (496)
Q Consensus 351 ~~~~~~--~~~~fD~Ii~~~~l~~~~ 374 (496)
.+.... .+...++|+++.+....+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fdp~ 286 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFDPE 286 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCCHH
Confidence 643321 246789999988766553
No 336
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=43.04 E-value=15 Score=31.23 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.4
Q ss_pred hhhccCCceeeeCCcceEEEEeee
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLD 456 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~ 456 (496)
.++..|||.+|||.|--|+-.|+.
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S 112 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLS 112 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccC
Confidence 456899999999999999999984
No 337
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=42.76 E-value=47 Score=27.45 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=40.3
Q ss_pred CcCCHHHHHHHH---ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEEEc
Q psy11730 298 CGAGLLGLYTLM---NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIILTS 367 (496)
Q Consensus 298 cGtG~~~~~la~---~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii~~ 367 (496)
||.|.++..+++ .+...|+.+|.+++.++.++.. .+.++.+|..+.... .-...|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 777888888765 3334799999999999887643 256788887764321 12467777664
No 338
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=42.44 E-value=35 Score=34.55 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHc--cCCeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMN--GAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~--~~~~v~giD~s~~~i~~a~~ 330 (496)
.++.+||=+|||. |.++..+++. |..+|+++|.+++-++.++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 3588999999875 6666565553 56789999999988887754
No 339
>PTZ00357 methyltransferase; Provisional
Probab=42.37 E-value=37 Score=37.74 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=48.4
Q ss_pred eEEEecCcCCHHHHHHHH----ccC-CeEEEEeCCHHHHHHhcCc--c--cccc--cCCCCceEEEecccCCccccC---
Q psy11730 292 SVLDVGCGAGLLGLYTLM----NGA-AHVSFQDYNQEVIESLTLP--N--ILMN--TDNLEKCKFYHGDWGSLSAVI--- 357 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~----~~~-~~v~giD~s~~~i~~a~~~--~--~~~~--~~~~~~v~~~~~d~~~~~~~~--- 357 (496)
.|+=+|+|-|-+--...+ .+. -+|++||-|+..+.....+ + ...+ ......|+++..|+..+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999998766543 233 4799999996643333222 1 1111 011456999999988764321
Q ss_pred -------CCceeEEEEc
Q psy11730 358 -------HSKFDIILTS 367 (496)
Q Consensus 358 -------~~~fD~Ii~~ 367 (496)
.+++|+|||.
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 2479999983
No 340
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=42.30 E-value=15 Score=39.22 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=52.0
Q ss_pred CeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+.|+|..+|.|.++.+|..... -.|+-++ .+..+...-.+. +-=+..||.+.-...+..||+|.++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydRG----------LIG~yhDWCE~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDRG----------LIGVYHDWCEAFSTYPRTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhcc----------cchhccchhhccCCCCcchhheehhh
Confidence 4799999999999999876654 2334332 111111111111 11144566553333378999999999
Q ss_pred ccccccchHh---Hhhe--eeecCCCC
Q psy11730 369 TIYSVANYNK---LLTV--WCLFPTHT 390 (496)
Q Consensus 369 ~l~~~~~~~~---~~~~--~~l~p~~~ 390 (496)
.+....+.-. ++-+ ++|.|+|.
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGW 462 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCce
Confidence 8888754422 2222 46777763
No 341
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=42.00 E-value=31 Score=31.73 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.3
Q ss_pred ccCCceeeeCCcceEEEEeeeee
Q psy11730 436 QGPGETVFVPGGWWHVVLNLDTT 458 (496)
Q Consensus 436 ~~~Ge~l~iP~gWwh~v~~l~~~ 458 (496)
.+.+..+|||.|.||-...+++.
T Consensus 102 ~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 102 AENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred CCCCCEEEeCCcceeEEEEcCCC
Confidence 34467999999999999999755
No 342
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.66 E-value=43 Score=34.05 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCCCeEEEecCcC-CHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCcc
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPN 332 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~-~~~~~v~giD~s~~~i~~a~~~~ 332 (496)
.+|.+|.=+|||. |.-++.-|+ .|+..|++||++++-++.|++--
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG 230 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG 230 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC
Confidence 3588999999986 877777665 56689999999999999988753
No 343
>KOG2497|consensus
Probab=41.57 E-value=15 Score=36.00 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=37.7
Q ss_pred ccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc
Q psy11730 265 YEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG 311 (496)
Q Consensus 265 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~ 311 (496)
..++..+|+++..|.+.+..... ..+..+..+|||.+......++..
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~ 112 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVP 112 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcc
Confidence 34677789999999999999877 567899999999999985434433
No 344
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=41.10 E-value=43 Score=31.23 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=26.7
Q ss_pred CCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCCH
Q psy11730 288 VDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYNQ 322 (496)
Q Consensus 288 ~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s~ 322 (496)
+.+++||=+|||. ...+..|+..|.++++.+|...
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4578999999995 4445555678889999998663
No 345
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=39.84 E-value=23 Score=36.63 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.5
Q ss_pred hhccCCceeeeCCcceEEEEeeee
Q psy11730 434 LVQGPGETVFVPGGWWHVVLNLDT 457 (496)
Q Consensus 434 ~~~~~Ge~l~iP~gWwh~v~~l~~ 457 (496)
..+++||++|+|.|..|.+.|.++
T Consensus 291 ~~l~~GD~~~iP~g~~H~i~N~G~ 314 (367)
T TIGR03404 291 FDYQAGDVGYVPRNMGHYVENTGD 314 (367)
T ss_pred EEECCCCEEEECCCCeEEEEECCC
Confidence 458999999999999999999953
No 346
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=39.79 E-value=29 Score=29.89 Aligned_cols=28 Identities=11% Similarity=-0.091 Sum_probs=23.4
Q ss_pred hhhccCCceeeeCCcceEEEEeeeeeEE
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLDTTVA 460 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~~~i~ 460 (496)
+..+.+||.+|+|++-.|.+.|.+++.-
T Consensus 76 ~~~L~aGD~i~~~~~~~H~~~N~e~~~~ 103 (125)
T PRK13290 76 VHPIRPGTMYALDKHDRHYLRAGEDMRL 103 (125)
T ss_pred EEEeCCCeEEEECCCCcEEEEcCCCEEE
Confidence 4668999999999999999999854443
No 347
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=39.74 E-value=52 Score=26.79 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=38.7
Q ss_pred CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccc
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETI 370 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l 370 (496)
++|| +-||+|.-+..++.. +-+.+++++ -++++...+..++... ...+|+|+..+-+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-------------~~~~~~~~g--------i~~~v~a~~~~~~~~~-~~~~Dvill~pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-------------MNKAAEEYG--------VPVKIAAGSYGAAGEK-LDDADVVLLAPQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-------------HHHHHHHCC--------CcEEEEEecHHHHHhh-cCCCCEEEECchH
Confidence 4566 889999887776532 223333322 2355566665554332 3568999998776
Q ss_pred ccc-cchHhHh
Q psy11730 371 YSV-ANYNKLL 380 (496)
Q Consensus 371 ~~~-~~~~~~~ 380 (496)
-|. .......
T Consensus 61 ~~~~~~i~~~~ 71 (95)
T TIGR00853 61 AYMLPDLKKET 71 (95)
T ss_pred HHHHHHHHHHh
Confidence 653 4444443
No 348
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.20 E-value=61 Score=28.04 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730 287 AVDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364 (496)
Q Consensus 287 ~~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I 364 (496)
.+++++||=||+|. ......|+..|..+|+-+.=+.+-.+...+.. ...++.+ .+++++... ...+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~------~~~~~~~--~~~~~~~~~-~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF------GGVNIEA--IPLEDLEEA-LQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH------TGCSEEE--EEGGGHCHH-HHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc------Cccccce--eeHHHHHHH-HhhCCeE
Confidence 46899999999985 33344445678888999988876554433221 1112333 334444322 3579999
Q ss_pred EEccccccccchHhHh
Q psy11730 365 LTSETIYSVANYNKLL 380 (496)
Q Consensus 365 i~~~~l~~~~~~~~~~ 380 (496)
++.-+.-+..-.+..+
T Consensus 80 I~aT~~~~~~i~~~~~ 95 (135)
T PF01488_consen 80 INATPSGMPIITEEML 95 (135)
T ss_dssp EE-SSTTSTSSTHHHH
T ss_pred EEecCCCCcccCHHHH
Confidence 9976665553333333
No 349
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=38.79 E-value=28 Score=36.58 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=34.4
Q ss_pred CCCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730 287 AVDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 287 ~~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~ 330 (496)
.+.|++|+=+|||. |.....+++....+|+.+|.++.-.+.|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 46899999999997 776666665444589999999988777664
No 350
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.03 E-value=49 Score=33.79 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCCH
Q psy11730 288 VDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYNQ 322 (496)
Q Consensus 288 ~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s~ 322 (496)
+.+++||=||||. ...+..|+..|..+++.+|.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4678999999995 4456666788989999999764
No 351
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.69 E-value=13 Score=30.06 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=13.0
Q ss_pred EEEecCcCCHHHHHHHH
Q psy11730 293 VLDVGCGAGLLGLYTLM 309 (496)
Q Consensus 293 VLDlGcGtG~~~~~la~ 309 (496)
-+|||||.|...-...+
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 47999999987666444
No 352
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=36.52 E-value=1.4e+02 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=31.2
Q ss_pred hHHHHHHHHhCC-CCCCCeEEEecCc-C-CH-HHHHHHHccCCeEEEEeCC
Q psy11730 275 TFDLLNFIKDNV-AVDKLSVLDVGCG-A-GL-LGLYTLMNGAAHVSFQDYN 321 (496)
Q Consensus 275 ~~~l~~~l~~~~-~~~~~~VLDlGcG-t-G~-~~~~la~~~~~~v~giD~s 321 (496)
+...++++.+.. .+.+++||=||+| + |. .+..|...|. .|+.++-+
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 344556666554 5889999999999 3 77 5555556665 57777644
No 353
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=35.91 E-value=29 Score=31.86 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=26.3
Q ss_pred hhhccCCceeeeCCcceEEEEeeeeeEEEeecccC
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCS 467 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~ 467 (496)
...+.+||.+++|++-.|...|.+..-+.-..++.
T Consensus 147 ~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 147 DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 34689999999999999999998654444444443
No 354
>KOG2539|consensus
Probab=35.80 E-value=25 Score=37.11 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=52.9
Q ss_pred CCCCeEEEecCcCCHHHHHHHH--cc-CCeEEEEeCCHHHHHHhcCcccc---cccCCCCceEEEecccCCccccCCCce
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLM--NG-AAHVSFQDYNQEVIESLTLPNIL---MNTDNLEKCKFYHGDWGSLSAVIHSKF 361 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~--~~-~~~v~giD~s~~~i~~a~~~~~~---~~~~~~~~v~~~~~d~~~~~~~~~~~f 361 (496)
.....++|+|.|.|.-+-++.. .+ ...++.||-|..|.......... .+..-..++.|...- ++......|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~---~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR---LPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc---CCCCcccce
Confidence 4567889999988766665443 23 36799999999998775443211 111111122222221 121113569
Q ss_pred eEEEEccccccccchH
Q psy11730 362 DIILTSETIYSVANYN 377 (496)
Q Consensus 362 D~Ii~~~~l~~~~~~~ 377 (496)
|+|++...++++.+..
T Consensus 276 Dlvi~ah~l~~~~s~~ 291 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKF 291 (491)
T ss_pred eeEEeeeeeeccCCch
Confidence 9999999999997665
No 355
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=35.46 E-value=26 Score=34.20 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=33.5
Q ss_pred hHHHHHHHHhCC------CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730 275 TFDLLNFIKDNV------AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY 320 (496)
Q Consensus 275 ~~~l~~~l~~~~------~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~ 320 (496)
-..|+.+|.+.+ ...++.+.||-+|||..+..+-+.|. .|++-|+
T Consensus 7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDl 57 (330)
T COG3392 7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcc-hhhhchH
Confidence 345677776653 25678999999999999999666664 5777775
No 356
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=35.05 E-value=56 Score=32.63 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=42.1
Q ss_pred eEEEecCcC--CHHHHHHHHccCCeEEEEeCCHHHHHHhcCc-------------------ccccccCCCCceEEEeccc
Q psy11730 292 SVLDVGCGA--GLLGLYTLMNGAAHVSFQDYNQEVIESLTLP-------------------NILMNTDNLEKCKFYHGDW 350 (496)
Q Consensus 292 ~VLDlGcGt--G~~~~~la~~~~~~v~giD~s~~~i~~a~~~-------------------~~~~~~~~~~~v~~~~~d~ 350 (496)
+||=+|||. +..+..|+..|.++++.+|...--...+.+. .... ...-+++.+..++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~--np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDR--VPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHH--CCCCEEEEEeccc
Confidence 478899984 4455556778889999998543222111111 1111 1233566666666
Q ss_pred CCccccCCCceeEEEEc
Q psy11730 351 GSLSAVIHSKFDIILTS 367 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~ 367 (496)
.+.....-.+||+|++.
T Consensus 79 ~~~~~~f~~~fdvVi~a 95 (291)
T cd01488 79 QDKDEEFYRQFNIIICG 95 (291)
T ss_pred CchhHHHhcCCCEEEEC
Confidence 65432224689999974
No 357
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=32.97 E-value=37 Score=29.82 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=22.1
Q ss_pred hhhhccCCceeeeCCcceEEEEeee
Q psy11730 432 LELVQGPGETVFVPGGWWHVVLNLD 456 (496)
Q Consensus 432 ~e~~~~~Ge~l~iP~gWwh~v~~l~ 456 (496)
....+.+||++++|.+.+|.+.|.+
T Consensus 75 ~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 75 YDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred EEEEecCCCEEEECCCCEEEEEcCC
Confidence 4567899999999999999999974
No 358
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=32.65 E-value=33 Score=31.10 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHh-cCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730 290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESL-TLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE 368 (496)
Q Consensus 290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~ 368 (496)
+++++=+|+..=..-..+.+.|+++|.-||.+.--+..- +.+ =.++...|+..-.....++||.+.|..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr----------~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR----------LSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc----------cccccHHHHHHHHHHhhccchhhheec
Confidence 567888888877777777789999999999886332210 000 001111222111111257899999988
Q ss_pred ccccc------------cchHhHhhe-eeecCCCCCcccEEEeeccC
Q psy11730 369 TIYSV------------ANYNKLLTV-WCLFPTHTPKDLLKVTSAEG 402 (496)
Q Consensus 369 ~l~~~------------~~~~~~~~~-~~l~p~~~~~~~~~~~~~~~ 402 (496)
+++|. .+...+.+. +.|.|++ .+.+....|
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG----~L~l~vPvG 114 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGG----LLFLGVPVG 114 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccCC----eEEEEeecC
Confidence 88887 244555544 3445544 466665555
No 359
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=32.35 E-value=93 Score=31.35 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=33.4
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCc
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMN-GAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~-~~~~v~giD~s~~~i~~a~~~ 331 (496)
.++++||=+|||. |..+..+++. |..+|+++|.+++.++.+++.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 4688999888864 6666666664 446899999999999887753
No 360
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=30.94 E-value=71 Score=35.74 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=46.0
Q ss_pred CeEEEecCcCCHHHHHHHHcc-------C------CeEEEEeCC---HHHHHHhcCcccc----------------cc--
Q psy11730 291 LSVLDVGCGAGLLGLYTLMNG-------A------AHVSFQDYN---QEVIESLTLPNIL----------------MN-- 336 (496)
Q Consensus 291 ~~VLDlGcGtG~~~~~la~~~-------~------~~v~giD~s---~~~i~~a~~~~~~----------------~~-- 336 (496)
-+|||+|-|+|...+.+.+.- + -+++++|.. .+.+..+...... .+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 489999999999988876422 1 378899953 3444333211000 00
Q ss_pred ----cCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 337 ----TDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 337 ----~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
....-++++..+|+.+........||+|+..
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD 173 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLD 173 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeC
Confidence 0011255677788776554434569999975
No 361
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=30.72 E-value=36 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred hhccCCceeeeCCcceEEEEeee
Q psy11730 434 LVQGPGETVFVPGGWWHVVLNLD 456 (496)
Q Consensus 434 ~~~~~Ge~l~iP~gWwh~v~~l~ 456 (496)
..+.+|+.++||.|-.|.+.|.+
T Consensus 104 ~~~~~g~sv~Ip~g~~H~i~n~g 126 (151)
T PF01050_consen 104 FTLKEGDSVYIPRGAKHRIENPG 126 (151)
T ss_pred EEEcCCCEEEECCCCEEEEECCC
Confidence 35789999999999999999974
No 362
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.63 E-value=40 Score=28.88 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.9
Q ss_pred hhhccCCceeeeCCcceEEEEeeeee
Q psy11730 433 ELVQGPGETVFVPGGWWHVVLNLDTT 458 (496)
Q Consensus 433 e~~~~~Ge~l~iP~gWwh~v~~l~~~ 458 (496)
..++.+||++++|.|=+|.+.+.+++
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccCCCC
Confidence 34688999999999999999999766
No 363
>KOG2198|consensus
Probab=30.56 E-value=93 Score=32.00 Aligned_cols=80 Identities=16% Similarity=0.017 Sum_probs=53.4
Q ss_pred CCCeEEEecCcCCHHHHHHHHccC-----CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-------
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMNGA-----AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV------- 356 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~~~-----~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~------- 356 (496)
++.+|||+.+--|.=+..+.+... ..|++-|.+..-+......... ....++.+...+....+..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~---l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR---LPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc---cCCcceeeecccceeccccccccCch
Confidence 478999999999999988876443 2799999999877665544322 2345555555554444332
Q ss_pred -CCCceeEEEEccccc
Q psy11730 357 -IHSKFDIILTSETIY 371 (496)
Q Consensus 357 -~~~~fD~Ii~~~~l~ 371 (496)
....||.|++.-+..
T Consensus 232 ~~~~~fDrVLvDVPCS 247 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCS 247 (375)
T ss_pred hhhhhcceeEEecccC
Confidence 124799999854443
No 364
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=30.53 E-value=77 Score=29.58 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCCCCCeEEEecCcCCHHHHHHHH---ccCCeEEEEeCCHHHHHHhc
Q psy11730 285 NVAVDKLSVLDVGCGAGLLGLYTLM---NGAAHVSFQDYNQEVIESLT 329 (496)
Q Consensus 285 ~~~~~~~~VLDlGcGtG~~~~~la~---~~~~~v~giD~s~~~i~~a~ 329 (496)
...+++++|+=+|+| ..+..+++ ....+|+++|.+++.+....
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 345789999999998 34444433 23357999999998776654
No 365
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=30.43 E-value=79 Score=29.90 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~ 330 (496)
.++.+||-.|+|+ |.....+++....+|++++.+++..+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4588999999996 666666676666889999999888777643
No 366
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=30.36 E-value=2.1e+02 Score=25.91 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=56.1
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC--
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-- 352 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-- 352 (496)
...|++.+.+.. ..+.+|+=|||=+-...+.-......+++..|++........ + .|..-|..+
T Consensus 12 ~~~l~~~l~~~~-~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~------------~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 12 AEFLARELLDGA-LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG------------D-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHhc-CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC------------c-ceEECCCCChh
Confidence 334566665532 356799999999887777642334478999999877655321 2 345555443
Q ss_pred -ccccCCCceeEEEEccccccccch
Q psy11730 353 -LSAVIHSKFDIILTSETIYSVANY 376 (496)
Q Consensus 353 -~~~~~~~~fD~Ii~~~~l~~~~~~ 376 (496)
++....++||+|++.+++-.-+-.
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHH
Confidence 332335799999999999433333
No 367
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=29.98 E-value=72 Score=31.62 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=33.7
Q ss_pred CCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~ 330 (496)
.+.+||..|||. |..+..+|+....+|++++.+++..+.+++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 477888888874 788888887666779999999999887754
No 368
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=29.83 E-value=92 Score=30.34 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=30.9
Q ss_pred CCCeEEEecCcCCHHHHHHHH----ccC-CeEEEEeCCHHHHHHhc
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLM----NGA-AHVSFQDYNQEVIESLT 329 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~----~~~-~~v~giD~s~~~i~~a~ 329 (496)
.+...+|+|+|+-.=+..|.. .+. ...+.||+|...+....
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta 123 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATA 123 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHH
Confidence 366999999998776666544 333 67999999999886543
No 369
>KOG2015|consensus
Probab=29.74 E-value=80 Score=31.87 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=59.2
Q ss_pred hHHHHHHHHhCCCCCCCeEEEecCcC-CH-HHHHHHHccCCeEEEEeCCHHHHHHhcCccc----------------ccc
Q psy11730 275 TFDLLNFIKDNVAVDKLSVLDVGCGA-GL-LGLYTLMNGAAHVSFQDYNQEVIESLTLPNI----------------LMN 336 (496)
Q Consensus 275 ~~~l~~~l~~~~~~~~~~VLDlGcGt-G~-~~~~la~~~~~~v~giD~s~~~i~~a~~~~~----------------~~~ 336 (496)
+..-.++++ +.+||=||+|. |- +...||..|+.++..||..---+....+... ..|
T Consensus 31 ~~e~l~~l~------~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn 104 (422)
T KOG2015|consen 31 SEENLEFLQ------DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVN 104 (422)
T ss_pred CHHHHHHHh------hCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHH
Confidence 344455554 35899999985 32 3444566777777766653222211111100 000
Q ss_pred -cCCCCceEEEecccCCccccCCCceeEEEE-ccccccccchHhHhhe
Q psy11730 337 -TDNLEKCKFYHGDWGSLSAVIHSKFDIILT-SETIYSVANYNKLLTV 382 (496)
Q Consensus 337 -~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~-~~~l~~~~~~~~~~~~ 382 (496)
.-....|.+...++++.+...-..||+|+| -+.+.--...+.++..
T Consensus 105 ~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~ 152 (422)
T KOG2015|consen 105 RRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVR 152 (422)
T ss_pred hhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHH
Confidence 123345677888888887655679999999 5666666666666543
No 370
>KOG4415|consensus
Probab=29.62 E-value=25 Score=32.29 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=19.4
Q ss_pred CCCCccceEecCCCCccccccCC
Q psy11730 168 KRPPYRWFVMGPARSGTGIHIDP 190 (496)
Q Consensus 168 ~~p~~~w~~iG~~gs~T~lH~D~ 190 (496)
.-+|+||+||||.-..--+|-|-
T Consensus 38 h~gPHRriWmGPQFef~eih~d~ 60 (247)
T KOG4415|consen 38 HLGPHRRIWMGPQFEFFEIHEDD 60 (247)
T ss_pred ccCccceeeecCceeEEEecCCC
Confidence 35789999999998888888774
No 371
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=29.44 E-value=21 Score=22.65 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=16.9
Q ss_pred CccccccccccchHHHHhhHH
Q psy11730 1 MVSTSETSKVLDSRARKRIKE 21 (496)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (496)
||||.-.++.+..+.+++|..
T Consensus 8 ~ISTnG~sP~la~~iR~~ie~ 28 (30)
T PF14824_consen 8 AISTNGKSPRLARLIRKEIER 28 (30)
T ss_dssp EEEESSS-HHHHHHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHHHHH
Confidence 789999999988888888765
No 372
>PF15138 Syncollin: Syncollin
Probab=28.92 E-value=43 Score=27.73 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=26.5
Q ss_pred CCchhhhccCC-ceeeeCCcceEEEEee--eeeEEEeec
Q psy11730 429 WKPLELVQGPG-ETVFVPGGWWHVVLNL--DTTVAVTQN 464 (496)
Q Consensus 429 ~~p~e~~~~~G-e~l~iP~gWwh~v~~l--~~~i~v~~~ 464 (496)
..-.+.-++|| |.-|+|.+|-+.+.+| ..-..+|+|
T Consensus 32 C~G~~l~v~pg~DlPylPs~w~n~iSSlvV~~RCeLtVW 70 (112)
T PF15138_consen 32 CGGAELSVEPGDDLPYLPSGWANKISSLVVAPRCELTVW 70 (112)
T ss_pred cCCcEEeecCCCCCCcCCccccCeeeeEEEcCceEEEEE
Confidence 34455668888 6889999999999998 344555554
No 373
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=28.83 E-value=91 Score=29.19 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCCCCeEEEecCcCCHHHHHHHH----ccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----
Q psy11730 287 AVDKLSVLDVGCGAGLLGLYTLM----NGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV----- 356 (496)
Q Consensus 287 ~~~~~~VLDlGcGtG~~~~~la~----~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~----- 356 (496)
.++++.|+|+|.-.|..+++.|. .|. .+|+++|++-..++-+..+ .+.|.|+.++-.+....
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHH
Confidence 35789999999999988888764 343 5899999986664433221 46788888864433211
Q ss_pred -CCCceeEEEEccccccccchHhHhh
Q psy11730 357 -IHSKFDIILTSETIYSVANYNKLLT 381 (496)
Q Consensus 357 -~~~~fD~Ii~~~~l~~~~~~~~~~~ 381 (496)
..+.--+.++-++-|+....-+.++
T Consensus 139 ~~~~y~kIfvilDsdHs~~hvLAel~ 164 (237)
T COG3510 139 LKNEYPKIFVILDSDHSMEHVLAELK 164 (237)
T ss_pred HhcCCCcEEEEecCCchHHHHHHHHH
Confidence 1122345556677777655544444
No 374
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=28.09 E-value=58 Score=36.17 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=27.7
Q ss_pred CCCCeEEEecCcC-C-HHHHHHHHccCCeEEEEeC
Q psy11730 288 VDKLSVLDVGCGA-G-LLGLYTLMNGAAHVSFQDY 320 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G-~~~~~la~~~~~~v~giD~ 320 (496)
+++.+||=||||+ | ..+..|+..|.++++.+|.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 5678999999997 4 4677778899999999984
No 375
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.48 E-value=2.7e+02 Score=29.68 Aligned_cols=169 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred CCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+++|+=+|=| +|.-+..+.......|+..|.++......... ....++.+..+.... .....+|+|+.+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~------~~~~~i~~~~g~~~~---~~~~~~d~vV~S 76 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQP------LLLEGIEVELGSHDD---EDLAEFDLVVKS 76 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhh------hhccCceeecCccch---hccccCCEEEEC
Confidence 37889999888 56666665556557899999877662111111 123456666654433 114689999998
Q ss_pred cccccccc-hHhHhhe-------eeecCCC-CCcccEEEeeccCCcccccccchhhHhcCCCCCCCCCCCCCchhhhcc-
Q psy11730 368 ETIYSVAN-YNKLLTV-------WCLFPTH-TPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQG- 437 (496)
Q Consensus 368 ~~l~~~~~-~~~~~~~-------~~l~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~~~~- 437 (496)
+-+-.... .+...+. ..||... .+..++.+....|-......+....+..+....-.-.-+....++...
T Consensus 77 PGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 77 PGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred CCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 87766533 3333322 1223332 122377777776666555555555554444221111224455666654
Q ss_pred -CCceeeeCCcceEE--EEeeeeeEEEeeccc
Q psy11730 438 -PGETVFVPGGWWHV--VLNLDTTVAVTQNFC 466 (496)
Q Consensus 438 -~Ge~l~iP~gWwh~--v~~l~~~i~v~~~~~ 466 (496)
+-|.+.+-..-|+- +.++.+.|+|-.|+.
T Consensus 157 ~~~d~~VlElSSfQL~~~~~~~P~iavilNi~ 188 (448)
T COG0771 157 EPADVYVLELSSFQLETTSSLRPEIAVILNIS 188 (448)
T ss_pred CCCCEEEEEccccccccCccCCccEEEEecCC
Confidence 33444444333322 223468888766653
No 376
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=26.52 E-value=1.8e+02 Score=30.53 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCCCeEEEecCcCCHHHHHHHHc---cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCcee
Q psy11730 288 VDKLSVLDVGCGAGLLGLYTLMN---GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFD 362 (496)
Q Consensus 288 ~~~~~VLDlGcGtG~~~~~la~~---~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD 362 (496)
+++++||=.| |+|.++..+++. ...+|++++-+++.+...... ...++..+..|+.+.... .-+..|
T Consensus 176 l~gK~VLITG-ASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~-------~~~~v~~v~~Dvsd~~~v~~~l~~ID 247 (406)
T PRK07424 176 LKGKTVAVTG-ASGTLGQALLKELHQQGAKVVALTSNSDKITLEING-------EDLPVKTLHWQVGQEAALAELLEKVD 247 (406)
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-------cCCCeEEEEeeCCCHHHHHHHhCCCC
Confidence 4678888555 677777777652 225788898876654322110 012345566666553321 124689
Q ss_pred EEEEccc
Q psy11730 363 IILTSET 369 (496)
Q Consensus 363 ~Ii~~~~ 369 (496)
+++.+..
T Consensus 248 iLInnAG 254 (406)
T PRK07424 248 ILIINHG 254 (406)
T ss_pred EEEECCC
Confidence 9887543
No 377
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.06 E-value=1.2e+02 Score=32.47 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~ 367 (496)
.+++|+=+|.|- |.-+..++......|++.|..+..++.+++. .+.+..++... .. -..+|+|+.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~----------g~~~~~~~~~~--~~-l~~~D~VV~S 77 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAER----------GVATVSTSDAV--QQ-IADYALVVTS 77 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhC----------CCEEEcCcchH--hH-hhcCCEEEEC
Confidence 578899999884 6666655554446899999887665543321 23333322110 00 1357999988
Q ss_pred ccccc
Q psy11730 368 ETIYS 372 (496)
Q Consensus 368 ~~l~~ 372 (496)
+.+..
T Consensus 78 pGi~~ 82 (488)
T PRK03369 78 PGFRP 82 (488)
T ss_pred CCCCC
Confidence 87654
No 378
>KOG1253|consensus
Probab=26.00 E-value=28 Score=37.04 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=61.1
Q ss_pred CCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---CCceeE
Q psy11730 289 DKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---HSKFDI 363 (496)
Q Consensus 289 ~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~ 363 (496)
++-+|||.=|+||.-++..|+. +...|++.|.++..++..+.+. +.| ....-+...+.|+..+-... ...||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv-~~N-~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNV-ELN-GVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhh-hhc-CchhhcccccchHHHHHHhccccccccce
Confidence 4568999999999999999875 3478999999999998765543 333 22334455556655432221 368999
Q ss_pred EEEccccccccchHhHhh
Q psy11730 364 ILTSETIYSVANYNKLLT 381 (496)
Q Consensus 364 Ii~~~~l~~~~~~~~~~~ 381 (496)
|=..+--...+-++..+.
T Consensus 187 IDLDPyGs~s~FLDsAvq 204 (525)
T KOG1253|consen 187 IDLDPYGSPSPFLDSAVQ 204 (525)
T ss_pred EecCCCCCccHHHHHHHH
Confidence 988765555444555544
No 379
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=25.74 E-value=96 Score=31.34 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~ 330 (496)
.++.+||=+|||. |..+..+|+....+|+++|.+++.++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3588999999965 777777776555579999999998888764
No 380
>PRK06153 hypothetical protein; Provisional
Probab=25.21 E-value=74 Score=33.08 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=27.3
Q ss_pred CCCCeEEEecCcC-CH-HHHHHHHccCCeEEEEeCC
Q psy11730 288 VDKLSVLDVGCGA-GL-LGLYTLMNGAAHVSFQDYN 321 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~-~~~~la~~~~~~v~giD~s 321 (496)
+++.+|+=||||. |. .+..|++.|.++++.+|..
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4678999999995 54 5566678899999999965
No 381
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=25.14 E-value=1.4e+02 Score=28.95 Aligned_cols=44 Identities=30% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCc
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMN-GAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~-~~~~v~giD~s~~~i~~a~~~ 331 (496)
.++.+||=+|+|. |.++..+|+. |...|+++|.+++-.+.+++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 4688999888864 5566666654 445699999998888776653
No 382
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.37 E-value=80 Score=32.64 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.4
Q ss_pred hccCCceeeeCCcceEEEEeeeee
Q psy11730 435 VQGPGETVFVPGGWWHVVLNLDTT 458 (496)
Q Consensus 435 ~~~~Ge~l~iP~gWwh~v~~l~~~ 458 (496)
.+++||++++|.|..|.+.|.+..
T Consensus 113 ~L~~GD~~~fP~g~~H~~~n~~~~ 136 (367)
T TIGR03404 113 DVGAGDLWYFPPGIPHSLQGLDEG 136 (367)
T ss_pred EECCCCEEEECCCCeEEEEECCCC
Confidence 589999999999999999998543
No 383
>PLN02740 Alcohol dehydrogenase-like
Probab=24.02 E-value=1e+02 Score=31.70 Aligned_cols=43 Identities=26% Similarity=0.085 Sum_probs=32.3
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccC-CeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGA-AHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~-~~v~giD~s~~~i~~a~~ 330 (496)
.++.+||=+|||. |..+..+|+... .+|+++|.+++.++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3578999999864 666666666444 479999999998888764
No 384
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=23.76 E-value=1.2e+02 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=36.3
Q ss_pred eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEcccc
Q psy11730 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETI 370 (496)
Q Consensus 292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l 370 (496)
+|| +-||+|..+..+++.- -+.++++ .-.+++...+..++.... ...+|+|++.+=+
T Consensus 3 kIL-lvCg~G~STSlla~k~-------------k~~~~e~--------gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi 60 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKT-------------TEYLKEQ--------GKDIEVDAITATEGEKAIAAAEYDLYLVSPQT 60 (104)
T ss_pred EEE-EECCCchHHHHHHHHH-------------HHHHHHC--------CCceEEEEecHHHHHHhhccCCCCEEEEChHH
Confidence 344 7899999888766432 1122221 113455555554443221 3468999998665
Q ss_pred ccc-cchHhHh
Q psy11730 371 YSV-ANYNKLL 380 (496)
Q Consensus 371 ~~~-~~~~~~~ 380 (496)
-|. .+.....
T Consensus 61 ~~~~~~i~~~~ 71 (104)
T PRK09590 61 KMYFKQFEEAG 71 (104)
T ss_pred HHHHHHHHHHh
Confidence 553 4444444
No 385
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=23.53 E-value=88 Score=29.24 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=27.7
Q ss_pred CCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCC
Q psy11730 288 VDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYN 321 (496)
Q Consensus 288 ~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s 321 (496)
+...+|+=+|||. ...+..|++.|..+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678999999995 446666778888999999987
No 386
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=23.46 E-value=34 Score=26.37 Aligned_cols=15 Identities=33% Similarity=0.988 Sum_probs=12.6
Q ss_pred hhccCCceeeeCCcc
Q psy11730 434 LVQGPGETVFVPGGW 448 (496)
Q Consensus 434 ~~~~~Ge~l~iP~gW 448 (496)
..+.|||++++|.||
T Consensus 46 ~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 46 VTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEETTEEEEE-TTE
T ss_pred EEEcCCcEEEECCCC
Confidence 568999999999997
No 387
>KOG1099|consensus
Probab=23.14 E-value=63 Score=31.05 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=54.5
Q ss_pred cchHHHHHHHHhCCCCCC-CeEEEecCcCCHHHHHHHHccC----------CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730 273 ECTFDLLNFIKDNVAVDK-LSVLDVGCGAGLLGLYTLMNGA----------AHVSFQDYNQEVIESLTLPNILMNTDNLE 341 (496)
Q Consensus 273 ~~~~~l~~~l~~~~~~~~-~~VLDlGcGtG~~~~~la~~~~----------~~v~giD~s~~~i~~a~~~~~~~~~~~~~ 341 (496)
.+++.|++.=.+..-+.| ++|+||.+-.|.++..|++... +.|++||+.+-+ ..+
T Consensus 24 RSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~ 89 (294)
T KOG1099|consen 24 RSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIE 89 (294)
T ss_pred HhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccC
Confidence 345555554444433454 5899999999999999987322 128999976522 355
Q ss_pred ceEEEecccCCcccc------C-CCceeEEEEccc
Q psy11730 342 KCKFYHGDWGSLSAV------I-HSKFDIILTSET 369 (496)
Q Consensus 342 ~v~~~~~d~~~~~~~------~-~~~fD~Ii~~~~ 369 (496)
.|.-+++|+...... + .+..|+|+|..+
T Consensus 90 GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 90 GVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGA 124 (294)
T ss_pred ceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence 666688887654321 1 358999999654
No 388
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=22.83 E-value=95 Score=28.99 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCC
Q psy11730 288 VDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYN 321 (496)
Q Consensus 288 ~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s 321 (496)
+.+.+||=+|||. +..+..|+..|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4678999999995 445666678898999999976
No 389
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.79 E-value=64 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730 299 GAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 299 GtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~ 331 (496)
|.|..+..+|+....+|+++|.++.-.+.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 568888888886669999999999999888754
No 390
>PRK08223 hypothetical protein; Validated
Probab=22.39 E-value=90 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCCCeEEEecCcC--CHHHHHHHHccCCeEEEEeCCH
Q psy11730 288 VDKLSVLDVGCGA--GLLGLYTLMNGAAHVSFQDYNQ 322 (496)
Q Consensus 288 ~~~~~VLDlGcGt--G~~~~~la~~~~~~v~giD~s~ 322 (496)
+.+.+||=+|||. +..+..|+..|.++++.+|...
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5688999999995 4567788899999999998653
No 391
>PLN02827 Alcohol dehydrogenase-like
Probab=22.20 E-value=1.3e+02 Score=30.99 Aligned_cols=43 Identities=28% Similarity=0.212 Sum_probs=31.4
Q ss_pred CCCCeEEEecCcC-CHHHHHHHH-ccCCeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLM-NGAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~-~~~~~v~giD~s~~~i~~a~~ 330 (496)
.++.+||=.|+|. |.+++.+++ .|...|+++|.+++..+.++.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3588999998764 555555555 454579999999988887754
No 392
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=21.94 E-value=1.3e+02 Score=29.47 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred ecch-HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHh
Q psy11730 272 WECT-FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESL 328 (496)
Q Consensus 272 ~~~~-~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a 328 (496)
|+.+ ..|+.+|...++-...+.+|.-||+|...+.+. +..++.-|++++.+..-
T Consensus 7 y~GgK~~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~~ 61 (266)
T TIGR00571 7 WAGGKTSLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINLY 61 (266)
T ss_pred cCccHHHHHHHHHHhcCcccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHHH
Confidence 5554 357888888876444689999999999988753 24588889999988753
No 393
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=21.83 E-value=68 Score=28.95 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=26.7
Q ss_pred hhhhccCCceeeeCCcceEEEEeeeeeEEEee
Q psy11730 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVTQ 463 (496)
Q Consensus 432 ~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~ 463 (496)
-.+.+++||++++|.|--|.-.....|+++-+
T Consensus 70 ~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvI 101 (159)
T TIGR03037 70 EDVPIREGDIFLLPPHVPHSPQRPAGSIGLVI 101 (159)
T ss_pred EEEEECCCCEEEeCCCCCcccccCCCcEEEEE
Confidence 35788999999999999999888777777544
No 394
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=21.13 E-value=1.3e+02 Score=31.03 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=29.6
Q ss_pred CCCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhc
Q psy11730 288 VDKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLT 329 (496)
Q Consensus 288 ~~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~ 329 (496)
+.+.+|+=+|+| .|..+...++.....|+.+|.+++.++.+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 456789999888 366666655543447999999987766543
No 395
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=20.96 E-value=1.4e+02 Score=28.82 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=21.6
Q ss_pred eEEEecCcC-C-HHHHHHHHccCCeEEEEeCCH
Q psy11730 292 SVLDVGCGA-G-LLGLYTLMNGAAHVSFQDYNQ 322 (496)
Q Consensus 292 ~VLDlGcGt-G-~~~~~la~~~~~~v~giD~s~ 322 (496)
+||=+|||. | .....|+..|.++++.+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 477788883 3 344455678889999998643
No 396
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=20.81 E-value=1.4e+02 Score=31.15 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCeEEEec-Cc-CCHHHHHHHHc---cCCeEEEEeCCHHHHHHhcC
Q psy11730 289 DKLSVLDVG-CG-AGLLGLYTLMN---GAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 289 ~~~~VLDlG-cG-tG~~~~~la~~---~~~~v~giD~s~~~i~~a~~ 330 (496)
++.+||=+| || .|..+..+++. |+.+|+++|.+++.++.+++
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 467888887 45 58888777775 34589999999999888765
No 397
>PRK08328 hypothetical protein; Provisional
Probab=20.77 E-value=1e+02 Score=29.52 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=26.7
Q ss_pred CCCCeEEEecCcC-C-HHHHHHHHccCCeEEEEeCC
Q psy11730 288 VDKLSVLDVGCGA-G-LLGLYTLMNGAAHVSFQDYN 321 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G-~~~~~la~~~~~~v~giD~s 321 (496)
+.+.+|+=+|||. | ..+..|+..|.++++.+|..
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999994 4 45666678899999999854
No 398
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=20.73 E-value=74 Score=29.88 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=26.6
Q ss_pred hccCCceeeeCCcceEEEEee---eeeEEEeeccc
Q psy11730 435 VQGPGETVFVPGGWWHVVLNL---DTTVAVTQNFC 466 (496)
Q Consensus 435 ~~~~Ge~l~iP~gWwh~v~~l---~~~i~v~~~~~ 466 (496)
.-++|+++++|+--||.|.-- +.=|+|.+|+.
T Consensus 165 ~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl~ 199 (201)
T TIGR02466 165 PPQEGRVLLFESWLRHEVPPNESEEERISVSFNYA 199 (201)
T ss_pred CCCCCeEEEECCCCceecCCCCCCCCEEEEEEeeE
Confidence 348899999999999999876 36688888874
No 399
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=20.72 E-value=1.3e+02 Score=30.60 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccC-CeEEEEeCCHHHHHHhcC
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGA-AHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~-~~v~giD~s~~~i~~a~~ 330 (496)
..+.+||=.|||. |..+..+|+... .+|+++|.+++..+.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3578898889864 666666666544 489999999998888764
No 400
>KOG1562|consensus
Probab=20.39 E-value=67 Score=32.07 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCccccC-CCce
Q psy11730 285 NVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLSAVI-HSKF 361 (496)
Q Consensus 285 ~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~-~~~f 361 (496)
......++||=||-|-|......++... ..+.-+|+....++..++....... -..+++.++.+|...+.... .+.|
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 3345688999999999998887666533 6788999999888887766443332 34678888888866554433 5799
Q ss_pred eEEEE
Q psy11730 362 DIILT 366 (496)
Q Consensus 362 D~Ii~ 366 (496)
|+|+.
T Consensus 197 dVii~ 201 (337)
T KOG1562|consen 197 DVIIT 201 (337)
T ss_pred eEEEE
Confidence 99996
No 401
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.24 E-value=1.4e+02 Score=29.86 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=32.2
Q ss_pred CCCCeEEEecCcC-CHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730 288 VDKLSVLDVGCGA-GLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331 (496)
Q Consensus 288 ~~~~~VLDlGcGt-G~~~~~la~~~~~~v~giD~s~~~i~~a~~~ 331 (496)
.++.+||=.|+|. |..+..+|+....+|++++.+++-.+.+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 3578999999753 5555666665555799999999888877653
No 402
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=20.19 E-value=3.1e+02 Score=26.07 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHHHhCC-CCCCCeEEEecCcCCH--HHHHH--HHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc-
Q psy11730 278 LLNFIKDNV-AVDKLSVLDVGCGAGL--LGLYT--LMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW- 350 (496)
Q Consensus 278 l~~~l~~~~-~~~~~~VLDlGcGtG~--~~~~l--a~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~- 350 (496)
.++||.... +-+.+.++++.|+.|. .++.| |.+ -.++++.|-..++.....++.... .+....++|+.++.
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~--~~~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE--AGLSDVVEFVVGEAP 106 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh--ccccccceEEecCCH
Confidence 445555543 3456789999776542 34444 333 336788887776655443332211 12234568888873
Q ss_pred CCccccCCCceeEEEEccccccccchH-hHhheeeecCCC
Q psy11730 351 GSLSAVIHSKFDIILTSETIYSVANYN-KLLTVWCLFPTH 389 (496)
Q Consensus 351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~-~~~~~~~l~p~~ 389 (496)
+++... -...|+++...=. .+.. .+|+...+-|.+
T Consensus 107 e~~~~~-~~~iDF~vVDc~~---~d~~~~vl~~~~~~~~G 142 (218)
T PF07279_consen 107 EEVMPG-LKGIDFVVVDCKR---EDFAARVLRAAKLSPRG 142 (218)
T ss_pred HHHHhh-ccCCCEEEEeCCc---hhHHHHHHHHhccCCCc
Confidence 444432 3678888876553 3444 555533333433
No 403
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=20.19 E-value=1.4e+02 Score=29.65 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCeEEEecCcC-CHHHHHHHHc-cCCeEEEEeCCHHHHHHhcC
Q psy11730 289 DKLSVLDVGCGA-GLLGLYTLMN-GAAHVSFQDYNQEVIESLTL 330 (496)
Q Consensus 289 ~~~~VLDlGcGt-G~~~~~la~~-~~~~v~giD~s~~~i~~a~~ 330 (496)
++++||=+|||. |.++..+|+. |...|+++|.+++.++.+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 567888889875 7777777764 55668888998888776653
No 404
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.00 E-value=1.2e+02 Score=24.53 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=35.3
Q ss_pred ecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc-c
Q psy11730 296 VGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV-A 374 (496)
Q Consensus 296 lGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~-~ 374 (496)
+-||+|.-+..+++. +-+.+++++ -++++...+..+.... ...+|+|++.+-+-+. .
T Consensus 4 ~~Cg~G~sTS~~~~k-------------i~~~~~~~~--------~~~~v~~~~~~~~~~~-~~~~Diil~~Pqv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVKK-------------MKKAAEKRG--------IDAEIEAVPESELEEY-IDDADVVLLGPQVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHHH-------------HHHHHHHCC--------CceEEEEecHHHHHHh-cCCCCEEEEChhHHHHHH
Confidence 679999988876642 122222221 2356666666555432 4679999998766553 3
Q ss_pred chHh
Q psy11730 375 NYNK 378 (496)
Q Consensus 375 ~~~~ 378 (496)
...+
T Consensus 62 ~i~~ 65 (96)
T cd05564 62 EVKK 65 (96)
T ss_pred HHHH
Confidence 4333
Done!