RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11730
(496 letters)
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural
genomics consortium, SGC, chromatin regulator,
developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A
3ldb_A*
Length = 336
Score = 185 bits (471), Expect = 1e-54
Identities = 101/194 (52%), Positives = 129/194 (66%), Gaps = 10/194 (5%)
Query: 11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
++ +++KRI+E K+ ARPEL W Y + F V +NVER S +EF+
Sbjct: 2 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 61
Query: 70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS---KLG----- 121
E+YE+P KPVV+ E W+A KWTLE+L +KYRNQKFKCGEDN GYS K+
Sbjct: 62 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 121
Query: 122 -KKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
+ R+ D+ HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP
Sbjct: 122 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 181
Query: 181 RSGTGIHIDPLGTN 194
RSGTGIHIDPLGT+
Sbjct: 182 RSGTGIHIDPLGTS 195
Score = 124 bits (312), Expect = 5e-32
Identities = 88/113 (77%), Positives = 103/113 (91%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
WCLFPT TP++L+KVT EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 207 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 266
Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKT 495
FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 267 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILKQ 319
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold,
nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB:
4aap_A*
Length = 248
Score = 97.5 bits (243), Expect = 4e-23
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)
Query: 51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKC 110
+++ V R+H S Q F E++ P +PV++KGV ++W KW+LE + + +
Sbjct: 12 LEKTVPRLH--RPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPV 69
Query: 111 GEDNHGYSKLGKKYRNQKFK--------CGEDNHGY--SHPRRK---KLLDDYEVPIYFQ 157
E Y+ + GY H +L D +P Y
Sbjct: 70 -EVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCS 128
Query: 158 DDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDP 190
++ GP + + +H DP
Sbjct: 129 LGDG-----EEEEITINAWFGPQGTISPLHQDP 156
Score = 76.0 bits (187), Expect = 9e-16
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
L+ L + + + P + + L + PGE +
Sbjct: 170 IRLYSPQESGALYPHDTHLLHN-----TSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL 224
Query: 443 FVPGGWWHVVLNLDTTVAVTQNF 465
F+P +WH V LD + +V+ +
Sbjct: 225 FIPVKYWHYVRALDLSFSVSFWW 247
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 74.7 bits (183), Expect = 8e-15
Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 35/189 (18%)
Query: 32 GKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNAT 91
A + + + R+ E+ + +PVV+ + A
Sbjct: 19 EAGALGPAWDESQLRSYSFPTRPIPRLS----QSDPRAEELIENEEPVVLTDTNLVYPA- 73
Query: 92 YKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYS------------ 139
KW LE L + N F + + + F+ +
Sbjct: 74 LKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQ 133
Query: 140 ------------------HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
+K++ D+ + + Q + ++G
Sbjct: 134 DIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEG 193
Query: 182 SGTGIHIDP 190
+ T H
Sbjct: 194 NVTPAHYGE 202
Score = 52.0 bits (124), Expect = 2e-07
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
LFP + L R + + + Y R E V GPG+ +
Sbjct: 216 CILFPPDQ-FECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNV---VGYETVVGPGDVL 271
Query: 443 FVPGGWWHVVLNLDTT-VAVTQNF-------CSHTNFPVVYHKTIRGRPKLSK 487
++P WWH + +L + +T NF +P+ H+ + + K
Sbjct: 272 YIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 324
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification
enzyme, unknown function; 2.50A {Homo sapiens} PDB:
3al6_A*
Length = 338
Score = 73.1 bits (179), Expect = 2e-14
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 55 VERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFK---CG 111
V R+ S ++F++ KP+V++G+ + T KWT++ L + ++ K
Sbjct: 31 VPRLE--GVSREQFMQHLYPQRKPLVLEGI-DLGPCTSKWTVDYLSQVGGKKEVKIHVAA 87
Query: 112 EDNHGYSKLGKKYRNQKFK---------------CGEDNHGYSHPRRKKLLDDY-----E 151
+ YR F ED Y + D +
Sbjct: 88 VAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQ 147
Query: 152 VPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDP 190
P+ D F ++++ F + H D
Sbjct: 148 FPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDV 186
Score = 60.0 bits (145), Expect = 5e-10
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 430 KPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNF 471
+ E G+ +F+P W+H V++ + V V + +
Sbjct: 238 RRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSE 279
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 71.2 bits (173), Expect = 2e-13
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
++ L T ++L + S + E +F K + V G T
Sbjct: 300 IFYLIKP-TDENLARYESWSSSVTQSE--VFFGDKVD-----------KCYKCVVKQGHT 345
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
+FVP GW H VL +A NF + N +
Sbjct: 346 LFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 380
Score = 50.0 bits (118), Expect = 1e-06
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 144 KKLLDDYEVPIYFQD-DLFQY-----AGEDKRPPYRWFVMGPARSGTGIHIDPLGT 193
K+ + EVP + + + K ++ +MG S T HID GT
Sbjct: 233 TKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGT 288
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 70.8 bits (172), Expect = 3e-13
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
++ L T +L ++E +F K + G+T
Sbjct: 265 IFYLIRP-TNANLTLFECWSSSSNQNE--MFFGDQVD-----------KCYKCSVKQGQT 310
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
+F+P GW H VL +A NF N +
Sbjct: 311 LFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 345
Score = 51.1 bits (121), Expect = 5e-07
Identities = 19/176 (10%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 33 KDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIK-----GVTEN 87
+ + + + + + P+++ G+T
Sbjct: 79 PVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLP 138
Query: 88 WNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGY----SHPRR 143
+ +E + + + + G+
Sbjct: 139 SPSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDF-VKYYYSGKREKVLNVISLEFSD 197
Query: 144 KKLLDDYEVPIYFQ-----DDLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGT 193
+L + E P + ++L+ +RP ++ +M S T HID GT
Sbjct: 198 TRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGT 253
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 66.3 bits (160), Expect = 9e-12
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
++ + T ++ + E TWF K +V G+T
Sbjct: 330 IFYIAAP-TEQNFAAYQAHETSPDTT---TWF--------GDIANGAVK--RVVIKEGQT 375
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
+ +P GW H VL ++ NF N +
Sbjct: 376 LLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMR 410
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 21/169 (12%)
Query: 36 WFELGYADKFDKFKIVKE-NVERIHVKDYSPQ-EFIEKYEKPNKPVVIKGVTENWNATYK 93
+ +LG AD + K +VK+ + + + E + K + V V +TY
Sbjct: 160 FEKLGGADNWGKVFMVKDMDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQ--STYS 217
Query: 94 WTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHP---RRKKLLDDY 150
L+ K +R+ K + N + ++ P + +++
Sbjct: 218 MKLDTFRKLFRDTKNRPLLYNFLSLEFSDNNEMKEI--------AKPPRFVQEISMVNRL 269
Query: 151 EVPIYFQDDLFQ-----YAGEDKRPPYRWFV-MGPARSGTGIHIDPLGT 193
+ + + Y ED+RP F G A S T H+D G+
Sbjct: 270 WPDVSGAEYIKLLQREEYLPEDQRPKVEQFCLAGMAGSYTDFHVDFGGS 318
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin
modification, methylated H3K9, mental retardation,
metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A
{Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Length = 371
Score = 65.5 bits (159), Expect = 1e-11
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
++ L T +L ++E +F K + G+T
Sbjct: 181 IFYLIRP-TNANLTLFECWSSSSNQNE--MFF-----------GDQVDKCYKCSVKQGQT 226
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
+F+P GW H VL +A NF N +
Sbjct: 227 LFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 261
Score = 47.0 bits (111), Expect = 8e-06
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 144 KKLLDDYEVPIYFQD-----DLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGTN 194
+L + E P + +L+ +RP ++ +M S T HID GT+
Sbjct: 114 TRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTS 170
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent
dioxygenases, histone TAI protein, protein binding; HET:
OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B*
3pus_A*
Length = 392
Score = 63.7 bits (154), Expect = 4e-11
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
+ L ++ E +F+ K + + G+T
Sbjct: 208 TFYLIR-PASANISLYERWRSASNHSE--MFFADQVD-----------KCYKCIVKQGQT 253
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKT 478
+F+P GW + L +A +F + +
Sbjct: 254 LFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAY 290
Score = 51.7 bits (123), Expect = 3e-07
Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 36/210 (17%)
Query: 7 TSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQ 66
T K + + + +P NG + + + F ++ V R+ +
Sbjct: 2 TLKKKRTWHKHGPGQAPDV-KPVQNGSQLFIK---ELRSRTFPSAEDVVARVPGSQLT-L 56
Query: 67 EFIEKYEKPNKPVVIK---GVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKK 123
++E++ +P+++ G+ A + + + + K
Sbjct: 57 GYMEEH-GFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTD--------VTK 107
Query: 124 YRNQKFKCGEDNHGYSHPRRKKLL-------------DDYEVPIYFQD-DLFQY-----A 164
++ K K E Y RK++L E P + + A
Sbjct: 108 QKDCKMKLKEFVDYYYSTNRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDA 167
Query: 165 GEDKRPPYRWFVMGPARSGTGIHIDPLGTN 194
K ++ ++ S T HID G +
Sbjct: 168 LLAKPKVTKYCLICVKDSYTDFHIDSGGAS 197
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji
domain lysine demethylase, metal-binding, zinc,
zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A*
3u78_A*
Length = 397
Score = 63.7 bits (154), Expect = 5e-11
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 421 QLPSWPTEWKP--LELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
Q + + + V G T+FVP GW H VL +A NF + N +
Sbjct: 232 QSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289
Score = 57.5 bits (138), Expect = 4e-09
Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 19/202 (9%)
Query: 7 TSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQ 66
K + R E ++P G + + + F E + ++H + Q
Sbjct: 2 LMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKE---LRSRVFPSADEIIIKMHGSQLT-Q 57
Query: 67 EFIEKYEKPNKPVVIK---GVTENWNATYKWTLEKLGKKYRNQKFK---CGEDNHGYSKL 120
++EK+ + P+++ + + ++ ++ L
Sbjct: 58 RYLEKH-GFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTL 116
Query: 121 GKKYRNQKFKCGED--NHGYSHPRRKKLLDDYEVPIYFQD-DLFQY-----AGEDKRPPY 172
+ N K+ + EVP + + + K
Sbjct: 117 HNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQ 176
Query: 173 RWFVMGPARSGTGIHIDPLGTN 194
++ +MG S T HID GT+
Sbjct: 177 KYCLMGVQDSYTDFHIDFGGTS 198
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 61.1 bits (147), Expect = 3e-10
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
V+ L P T +L + + + + ++ + +E G T
Sbjct: 230 VFWLIPP-TAHNLELYENWLLSGSQGD--IFL---------GDRVSDCQRIE--LKQGYT 275
Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
+P GW H V T+ NF N P+
Sbjct: 276 FVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLK 310
Score = 46.5 bits (109), Expect = 1e-05
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 22/137 (16%)
Query: 67 EFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRN 126
++ + V + V N + T+ + + Y + E Y+ + ++ +
Sbjct: 96 NDVKMCVGSRRMVDVMDV--NTQKGIEMTMAQWTRYYETPE---EEREKLYNVISLEFSH 150
Query: 127 QKFKCGEDNHGYSHPRRKKLLDDYEVPIYF--------QDDLFQYAGEDKRPPYRWFV-M 177
+ + + +R +D + Q + E + P + + M
Sbjct: 151 TRLE--------NMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLM 202
Query: 178 GPARSGTGIHIDPLGTN 194
T H+D GT+
Sbjct: 203 SVRGCYTDFHVDFGGTS 219
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 57.5 bits (138), Expect = 2e-09
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 14/129 (10%)
Query: 268 GYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE 326
+W L + + + +V ++G GAGL+ + + GA V DY I
Sbjct: 57 TSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL 116
Query: 327 SLTLPNILMNTDNL--------EKCKFYHGDWGSLSAVIHS-----KFDIILTSETIYSV 373
+ NI +T N K WG + +F ++L ++ +
Sbjct: 117 NSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH 176
Query: 374 ANYNKLLTV 382
++ LL
Sbjct: 177 QAHDALLRS 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 7e-09
Identities = 67/387 (17%), Positives = 110/387 (28%), Gaps = 120/387 (31%)
Query: 195 PDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYE-TFV 253
P +G DD P + E++ + + VE ++L L E+E ++
Sbjct: 44 PTEGFAADDEPT--TPA-----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 254 ---NISHT------DLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLG 304
+I H ++ + K S L G G
Sbjct: 97 EGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 305 LYTLMNG--AAHVSFQD----YN------QEVIESL--TLPNILMNTDNLEKCKFYHG-- 348
L + G F++ Y ++I+ TL ++ T + EK F G
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLN 214
Query: 349 --DWGSLSAVIHSKFDIILTSE------TIYSVANYNKLLTVWCLFPTHTPKDLLKVTSA 400
+W + K D +L+ + +A+Y + TP +L
Sbjct: 215 ILEWLENPSNTPDK-DYLLSIPISCPLIGVIQLAHYVVTAKLLGF----TPGELRSYLKG 269
Query: 401 EGGKQRD--------EAITW--------------FSI------IYPRTQLPS-------- 424
G + E +W F I YP T LP
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 425 ----WPTEWKPLELVQG-PGETVF---------VPGGWWHVVLNLDTTVAVTQNFCSHTN 470
P+ P+ + E V +P G V ++L N
Sbjct: 330 NNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISL---------VNGAKN 376
Query: 471 FPVVYHKTIRGRPK-LS--KKWYRKLK 494
VV + G P+ L RK K
Sbjct: 377 L-VV---S--GPPQSLYGLNLTLRKAK 397
Score = 40.8 bits (95), Expect = 0.001
Identities = 44/261 (16%), Positives = 78/261 (29%), Gaps = 70/261 (26%)
Query: 138 Y-SHPRRKKLLDDYEVPIYFQDDL-FQYAGEDKRPPYRWFVMGPARSGTGI---HIDPLG 192
Y + + + + +F+D F P + G I + +
Sbjct: 1636 YKTSKAAQDVWN--RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 193 TNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETF 252
DG +K + K FK I+E T+ K + + T + L L E F
Sbjct: 1694 ETIVDGKLKTE------KIFKEINEHSTSYTFRSEKGLLSATQFTQPALT---LMEKAAF 1744
Query: 253 VNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGL-LGLYTLMNG 311
DLK G + TF AG LG Y +
Sbjct: 1745 -----EDLK----SKGLIPADATF-----------------------AGHSLGEYAALAS 1772
Query: 312 AAHV-SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETI 370
A V S + ++E + + M + + + ++G + A+ + + E +
Sbjct: 1773 LADVMSIES----LVEVVFYRGMTMQVA-VPRDELGRSNYG-MIAINPGRVAASFSQEAL 1826
Query: 371 Y--------------SVANYN 377
+ NYN
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYN 1847
Score = 40.0 bits (93), Expect = 0.002
Identities = 42/240 (17%), Positives = 69/240 (28%), Gaps = 113/240 (47%)
Query: 49 KIVKENVER--------IHVKDYSPQEFIEKY-EKPNK--P---------------VVIK 82
I+++++E + + + + QE ++ Y K N P +V+
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 83 GVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGY---- 138
G + +L L R K G D S+ + +K K + +
Sbjct: 381 GPPQ--------SLYGLNLTLRKAKAPSGLDQ---SR--IPFSERKLKFS---NRFLPVA 424
Query: 139 ----SH---PRRKKLLDDYE------------VPIYFQDDLFQYAGEDKRP--------- 170
SH P + D +P+Y D G D R
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-----GSDLRVLSGSISERI 479
Query: 171 -------PYRW-----------FVMGP------------ARSGTGIHIDPLGT---NPDD 197
P +W GP + GTG+ + GT NPDD
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 32.3 bits (73), Expect = 0.46
Identities = 47/291 (16%), Positives = 76/291 (26%), Gaps = 119/291 (40%)
Query: 33 KDAWFELGYADK-------FDKFKIVKENVER--IHVKDYSPQEFIEKY----------E 73
+D W AD F IV N IH + E Y
Sbjct: 1643 QDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 74 KPNKPVVIKGVTEN-----W-------NATYKWT--------------LEKLGKKYRNQK 107
K + K + E+ + +AT ++T L+ G +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 108 FKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYS------------------HPRRKKLLDD 149
F G H S LG E Y+ R +
Sbjct: 1759 F-AG---H--S-LG-----------E----YAALASLADVMSIESLVEVVF-YRGMTMQV 1795
Query: 150 YEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPL-----GTNPDDGD----V 200
VP E R Y + P R + L G V
Sbjct: 1796 -AVP----------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 201 KDDSPA---VESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFE 248
+ V + + + +D +TN+++ + Q + I+L ++ E
Sbjct: 1845 NYNVENQQYVAAGDLRALDT-VTNVLNFIKLQ-----KIDIIELQKSLSLE 1889
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 48.1 bits (114), Expect = 1e-06
Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 7/174 (4%)
Query: 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331
W F + + + +L +GCG L + G +V+ DY+ V+
Sbjct: 25 WFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVA----- 79
Query: 332 NILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTP 391
+ ++ + ++ D L + FD++L T+ ++ + HT
Sbjct: 80 AMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTV 138
Query: 392 KDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWP-TEWKPLELVQGPGETVFV 444
+L S + + RT+ + W G G +
Sbjct: 139 DQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFHFHL 192
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 49.1 bits (117), Expect = 2e-06
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 292 SVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350
++D+GCG G++GL L N A V F D + + S L + L++C+F +
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284
Query: 351 GSLSAVIHSKFDIILT 366
LS V +F+ +L
Sbjct: 285 --LSGVEPFRFNAVLC 298
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 47.3 bits (113), Expect = 2e-06
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
+LD+GCG G++G+ L + + D N+ I+ NI +N + + H D
Sbjct: 55 DILDLGCGYGVIGI-ALADEVKSTTMADINRRAIKL-AKENIKLNNLDNYDIRVVHSDL- 111
Query: 352 SLSAVIHSKFDIILT 366
V K++ I+T
Sbjct: 112 -YENVKDRKYNKIIT 125
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 44.5 bits (106), Expect = 2e-05
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
+ I+ + +V DVG G+G+L + GA V D + E + + N +N
Sbjct: 51 MLGIERAMVKPL-TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA-AEENAALN-- 106
Query: 339 NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN 375
+ L A + KFD+I VAN
Sbjct: 107 GIYDIALQKTS---LLADVDGKFDLI--------VAN 132
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 43.6 bits (103), Expect = 6e-05
Identities = 26/177 (14%), Positives = 63/177 (35%), Gaps = 23/177 (12%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT 337
L F + K ++D+ G G++ L A + + + + + + ++ N
Sbjct: 40 LAKFSYLPIRKGK--IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLAD-MAKRSVAYN- 95
Query: 338 DNLEKCKFYHGDWGSLSAVI-HSKFDIILTS-----ETIYSVANYNKLLTVWCLFPTHTP 391
++ + D ++ +I + DI+ + S+ N N+ + T
Sbjct: 96 QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL 155
Query: 392 KDLLKVTSA---EGGK--------QRDEAITWFSI--IYPRTQLPSWPTEWKPLELV 435
+D ++V ++ +GGK + + I + P+ P + V
Sbjct: 156 EDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTV 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 9e-05
Identities = 81/525 (15%), Positives = 140/525 (26%), Gaps = 148/525 (28%)
Query: 33 KDAWFELGYADKFDKFKIVKENVERIHVKDYSPQE----FIEKYEKPNKPVVIKGVTENW 88
+ F+ K + KE ++ I + + +V K V E
Sbjct: 31 DN--FDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 89 NATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSH---PR--- 142
YK+ + + + R S + + Y Q+ + DN ++ R
Sbjct: 88 RINYKFLMSPIKTEQRQP-----------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 143 ----RKKL--------------------------LDDYEVPIYFQDDLFQYAGEDKRPPY 172
R+ L Y+V +F
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----------- 185
Query: 173 RWFVMGPARSGTGI---------HIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNII 223
W + S + IDP T+ D + L ++
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLL 238
Query: 224 SELGKQVEN----LTSVSNIKLLRTPLFEYE--TFV---NISHTD-LKPNVYEGGYKIWE 273
K EN L +V N K F + TD L
Sbjct: 239 KS--KPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATT-------- 286
Query: 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI 333
L LL Y QD +EV+ T P
Sbjct: 287 ---------THISLDHHSMTLTPDEVKSLLLKY------LDCRPQDLPREVLT--TNPRR 329
Query: 334 L-----MNTDNLEKCKFY-HGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFP 387
L D L + H + L+ +I S +++ +E +++L +FP
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRL----SVFP 382
Query: 388 --THTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVP 445
H P LL + + K + +L L Q T+ +P
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVV--------NKLHK-----YSLVEKQPKESTISIP 429
Query: 446 GGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWY 490
+ + + L+ A+ ++ H N P + P L + +Y
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 41.0 bits (95), Expect = 0.001
Identities = 43/296 (14%), Positives = 84/296 (28%), Gaps = 82/296 (27%)
Query: 1 MVSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERI-- 58
++T + K ++ ++ + + L + Y FD+ + + I
Sbjct: 340 GLATWDNWKHVNC---DKLTTIIESSLNVLEPAE------YRKMFDRLSVFPPSA-HIPT 389
Query: 59 --------HVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKC 110
V + K K + E ++ + Y K K
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHK-------YSLVEKQPKESTISIPSI---YLELKVKL 439
Query: 111 GEDNHGYSKLGKKYRNQKFKCG-------EDNHGYS----HPRRKKLLDDYEV-PIYFQD 158
+ + + Y K D + YS H + + + + + F D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 159 DLFQYAGEDKRPPYRWF-----VMGPARSGTGIHIDPLGTNPDDGDVK-------DDSPA 206
+R+ A + +G ++ L +K D+ P
Sbjct: 500 -------------FRFLEQKIRHDSTAWNASGSILNTL------QQLKFYKPYICDNDPK 540
Query: 207 VESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLF-EYETFVNISHTDLK 261
E ++ I+ L K ENL LLR L E E +H ++
Sbjct: 541 YE--------RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/113 (15%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 268 GY-KIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVI 325
+ + + + + +N +LD+G G GLL + + A + D +++++
Sbjct: 27 CFDDFYGVSVSIASVDTEN-----PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML 81
Query: 326 ESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNK 378
E K K+ D+ K+D+++++ +I+ + + +K
Sbjct: 82 E-----IAKNRFRGNLKVKYIEADYSKYD--FEEKYDMVVSALSIHHLEDEDK 127
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 42.0 bits (98), Expect = 2e-04
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT 337
LL ++ V D+G G G+L L+ GA V + ++E ++ L
Sbjct: 38 LLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVL--------I 89
Query: 338 DNLE----KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLF 386
+NL K K + GD ++ + DI++ + S + + F
Sbjct: 90 ENLGEFKGKFKVFIGDVSEFNS----RVDIVIMNPPFGSQRKHADRPFLLKAF 138
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 41.0 bits (96), Expect = 5e-04
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 14/127 (11%)
Query: 247 FEYETFVNI--SHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLG 304
FE + + P G ++ ++ + + + D+GCG G
Sbjct: 11 FELNLICDFFSNMERQGP----GSPEVTLKALSFIDNLTEK-----SLIADIGCGTGGQT 61
Query: 305 LYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364
+ + V+ D+ I+ N + G L D+I
Sbjct: 62 MVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN--RVTGIVGSMDDLPFRNEE-LDLI 118
Query: 365 LTSETIY 371
+ IY
Sbjct: 119 WSEGAIY 125
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 40.2 bits (94), Expect = 6e-04
Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
LD+GCG G LY NG V D N I ++ + + +NL+ D +
Sbjct: 36 TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANV---ERIKSIENLDNLHTRVVDLNN 91
Query: 353 LSAVIHSKFDIILTSETIYSV--ANYNKLLT--VWCLFPTHTPKDLLKVTSAEGGKQRDE 408
L+ ++D IL++ + + L+ C P L V + +
Sbjct: 92 LT--FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG---GYNLIVAAMDTADYPCT 146
Query: 409 AITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVA 460
F + +L + W+ ++ + GE + L T +A
Sbjct: 147 --VGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLA 196
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 40.0 bits (93), Expect = 7e-04
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332
+ L+ D + SV+D G G G+L + + GA V+ D + + IE+
Sbjct: 36 TAAYFLIEIYNDGNIGGR-SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETA---- 90
Query: 333 ILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367
N F D +S K+D + +
Sbjct: 91 ----KRNCGGVNFMVADVSEISG----KYDTWIMN 117
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 39.5 bits (92), Expect = 0.001
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 279 LNFIKDNVAVDKL-SVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIE--SLTLPNIL 334
+N + + V+D+GCG G L L + ++ D + +E L +
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDL 394
+ + E+ + G + +D E I + LF PK +
Sbjct: 78 LPRNQWERLQLIQGAL-TYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV 136
Query: 395 L 395
+
Sbjct: 137 I 137
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 40.4 bits (95), Expect = 0.001
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 292 SVLDVGCGAGLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350
VLDVGCGAG+L + + ++ D + +E+ + N + + + +
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-TL---AANGVEGEVFASNV 254
Query: 351 GSLSAVIHSKFDIILT 366
S + +FD+I++
Sbjct: 255 FS---EVKGRFDMIIS 267
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.4 bits (91), Expect = 0.001
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 9 KVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEF 68
+ LD+ ++ +E +++A+ +L + W + +++ +K K N RI + + F
Sbjct: 99 QELDAASKVMEQEWREKAKKDL---EEWNQ-RQSEQVEKNK--INN--RI-----ADKAF 145
Query: 69 IEKYE 73
++ +
Sbjct: 146 YQQPD 150
Score = 30.5 bits (68), Expect = 0.97
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 18/74 (24%)
Query: 49 KIVK---ENVERIHVKDYSP----QEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGK 101
I K E +R+ D + QE+ EK +K E WN +EK
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL---------EEWNQRQSEQVEKNKI 136
Query: 102 KYRN--QKFKCGED 113
R + F D
Sbjct: 137 NNRIADKAFYQQPD 150
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 39.5 bits (92), Expect = 0.001
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
+ D+GCG G L+ ++ D + IE + N ++ K G +
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA--DRVKGITGSMDN 107
Query: 353 LSAVIHSKFDIILTSETIYSV 373
L D+I + IY++
Sbjct: 108 LPFQNEE-LDLIWSEGAIYNI 127
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 39.3 bits (91), Expect = 0.002
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 23/146 (15%)
Query: 249 YETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTL 308
+ F ++H+ + E K + K + +L +G GAG + L L
Sbjct: 19 FRRF--LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSE-----IKILSIGGGAGEIDLQIL 71
Query: 309 -------MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD-------WGSLS 354
+ + + E I ++ T NLE KF L
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYK--ELVAKTSNLENVKFAWHKETSSEYQSRMLE 129
Query: 355 AVIHSKFDIILTSETIYSVANYNKLL 380
K+D I + +Y V + L
Sbjct: 130 KKELQKWDFIHMIQMLYYVKDIPATL 155
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 37.9 bits (89), Expect = 0.002
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF-- 345
+ VLD+ G+G L + + G + + N++ + DN+ K
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ--------DNIIMTKAEN 81
Query: 346 ----YHGDWGSLSAVIHSKFDIIL 365
+ + +FD++
Sbjct: 82 RFTLLKMEAERAIDCLTGRFDLVF 105
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 39.4 bits (91), Expect = 0.003
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 7/123 (5%)
Query: 279 LNFIKDNVAVDKL-SVLDVGCGAGLL--GLYTLMNGAAHVSFQDYNQEVIE---SLTLPN 332
+ + ++ +++D GCG+G L L + D + + + +
Sbjct: 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769
Query: 333 ILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPK 392
+ N++ Y G + +H DI E I + + PK
Sbjct: 770 LNKEACNVKSATLYDGSILEFDSRLHD-VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828
Query: 393 DLL 395
L+
Sbjct: 829 LLI 831
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 38.3 bits (89), Expect = 0.003
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
+ L++GC AG L ++ D I T + D
Sbjct: 54 NGLEIGCAAGAF-TEKLAPHCKRLTVIDVMPRAIGRACQ-----RTKRWSHISWAATDIL 107
Query: 352 SLSAVIHSKFDIILTSETIYSVANYNKLLTV 382
S FD+I+ +E +Y + + ++ T
Sbjct: 108 QFST--AELFDLIVVAEVLYYLEDMTQMRTA 136
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 39.0 bits (90), Expect = 0.003
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 280 NFIKDNVAVDKLS-VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
I N K VLDVGCG+G+L + GA + Y E +L+ ++
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSN 203
Query: 339 NLE-KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLL 380
NL + G + + DII+ SE + + ++L
Sbjct: 204 NLTDRIVVIPGK--VEEVSLPEQVDIII-SEPMGYMLFNERML 243
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 38.5 bits (89), Expect = 0.003
Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 18/213 (8%)
Query: 280 NFIKDNVAVDKLS-VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
N I N + K VLDVGCG G+L ++ +GA HV D + + + ++
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAK---ELVELNG 84
Query: 339 NLEKCKFYHGD-------WGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV-WCLFPT 388
+K G + + +I L E++ Y + L +FP
Sbjct: 85 FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144
Query: 389 HTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGW 448
K + + E + +DE + ++ +Y P P + V
Sbjct: 145 ---KCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDK 201
Query: 449 WHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRG 481
+L+T F S+ I G
Sbjct: 202 LIEF-DLNTVKISDLAFKSNFKLTAKRQDMING 233
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 38.4 bits (89), Expect = 0.004
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 278 LLNFIKDNVA---VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNIL 334
LL +++ + V VLD+G G G L L L A V + + + SL +
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTL-PLARMGAEVVGVEDDLASVLSLQK-GL- 275
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366
N K + H D + ++FDII+T
Sbjct: 276 --EANALKAQALHSDVDE-ALTEEARFDIIVT 304
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 38.5 bits (89), Expect = 0.004
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 280 NFIKDNVAVDKLS-VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
I N K VLDVGCG+G+L + GA + Y E +L+ ++
Sbjct: 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKI----YAVEASTMAQHAEVLVKSN 95
Query: 339 NLE-KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLL 380
NL + G + + DII+ SE + + ++L
Sbjct: 96 NLTDRIVVIPGK--VEEVSLPEQVDIII-SEPMGYMLFNERML 135
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 38.1 bits (88), Expect = 0.005
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 280 NFIKDNVAVDK-LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
+FI N + K VLDVGCG G+L ++ GA V + E L ++ +
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKV----LGVDQSEILYQAMDIIRLN 109
Query: 339 NLE-KCKFYHGDWGSLSAVIHSKFDIILT 366
LE G + + K D+I++
Sbjct: 110 KLEDTITLIKGKIEEVH-LPVEKVDVIIS 137
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 37.5 bits (87), Expect = 0.005
Identities = 16/128 (12%), Positives = 44/128 (34%), Gaps = 21/128 (16%)
Query: 259 DLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQ 318
++ ++ Y I I + + + +D+G G G L + +
Sbjct: 19 EISKTLFAPIYPII------AENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRAL 72
Query: 319 DYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS------KFDIILTSETIYS 372
D+++ + E N ++ + + GD +H+ D+I++ +++
Sbjct: 73 DFSKHMNEIALKNIADANLND--RIQIVQGD-------VHNIPIEDNYADLIVSRGSVFF 123
Query: 373 VANYNKLL 380
+
Sbjct: 124 WEDVATAF 131
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 37.6 bits (87), Expect = 0.005
Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES----LTLPNILMNTDNLEKC 343
++ +VLD+GCG G +Y +GA V D ++ ++ T P +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV---------- 92
Query: 344 KFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLL 380
+ ++ + ++++L+S ++ +A+++ +
Sbjct: 93 CYEQKAIEDIA-IEPDAYNVVLSSLALHYIASFDDIC 128
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 37.9 bits (87), Expect = 0.005
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 280 NFIKDNVAVDK-LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
N + N + +VLDVG G+G+L +++ GA V Y E + L+ +
Sbjct: 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKV----YAVEATKMADHARALVKAN 108
Query: 339 NLEKC-KFYHGDWGSLSAVIHSKFDIILT 366
NL+ + G + K D+I++
Sbjct: 109 NLDHIVEVIEGS--VEDISLPEKVDVIIS 135
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 37.3 bits (86), Expect = 0.007
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN 336
NFI LD G G G + L A + + ++E
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK-----RE 135
Query: 337 TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETI 370
+ KF + + + + +D+I+ T
Sbjct: 136 LAGMPVGKFILASMETAT-LPPNTYDLIVIQWTA 168
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 37.7 bits (87), Expect = 0.007
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 280 NFIKDNVAVDKLS-VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
N + N + K VLDVG G G+L ++ GA V E ++ +
Sbjct: 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKV----IGIECSSISDYAVKIVKAN 111
Query: 339 NLE-KCKFYHGDWGSLSAVIHSKFDIILT 366
L+ G + + K DII++
Sbjct: 112 KLDHVVTIIKGKVEEVE-LPVEKVDIIIS 139
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 36.8 bits (85), Expect = 0.009
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
+VLD G G L L + + + ++ +N K GD
Sbjct: 26 TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN---FSRENNF-KLNISKGDIR 81
Query: 352 SLSAVIHSKFDIILTSETIY 371
L S + + TI+
Sbjct: 82 KLPFKDES-MSFVYSYGTIF 100
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 37.0 bits (85), Expect = 0.009
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 280 NFIK----DNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM 335
NFIK SVLD+GCG G L G D + I
Sbjct: 51 NFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDAR--VRAR 108
Query: 336 NTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371
N K F D + +FD+I + + +
Sbjct: 109 NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 144
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 35.9 bits (83), Expect = 0.016
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 18/106 (16%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE--SLTLPNIL 334
+LL IK VLD+GC +G L + VS + E E L +++
Sbjct: 24 NLLKHIKKE----WKEVLDIGCSSGAL-GAAIKENGTRVSGIEAFPEAAEQAKEKLDHVV 78
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLL 380
+ + +FD ++ + + + + ++
Sbjct: 79 LGDIETMDMPYEEE-----------QFDCVIFGDVLEHLFDPWAVI 113
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 36.2 bits (84), Expect = 0.020
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD-W 350
VL+ G + LM G + V D +QE ++ + N+ +N +L K +F D +
Sbjct: 223 RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD-IARQNVELNKLDLSKAEFVRDDVF 281
Query: 351 GSLSAVIHS--KFDII 364
L KFD+I
Sbjct: 282 KLLRTYRDRGEKFDVI 297
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 35.6 bits (82), Expect = 0.022
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 20/133 (15%)
Query: 255 ISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAH 314
I T Y + + ++ ++L++G G L
Sbjct: 12 IKDTAGHKYAYNFDFDVMH--PFMVRAFTPFFR--PGNLLELGSFKGDF-TSRLQEHFND 66
Query: 315 VSFQDYNQEVIE---SLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371
++ + ++E I I E + ++D I+ + +
Sbjct: 67 ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL------------PRRYDNIVLTHVLE 114
Query: 372 SVANYNKLLTVWC 384
+ + LL
Sbjct: 115 HIDDPVALLKRIN 127
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 35.5 bits (82), Expect = 0.023
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 291 LSVLDVGCGAGLLGLYTLMNGAAHV 315
L ++D+GCG G + +GA++V
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYV 69
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 35.7 bits (81), Expect = 0.026
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 268 GYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYT-LMNGAAHVSFQDYNQEVIE 326
GY+ C L +K + VLD+GC G L L G + + D + +I
Sbjct: 26 GYRNPSCEDGRLRVLKPEWFRGR-DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIH 84
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 35.1 bits (81), Expect = 0.036
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 239 IKLLRTPLFEYETFVNISHTDLKPNVYE---GGYKIWECTFDLLNFIKDNVAVDK-LSVL 294
+ L+ + N +TD VYE G I + I ++ +++ VL
Sbjct: 1 MTLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVL 60
Query: 295 DVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS 354
D+G G G +Y AH D ++ K F D +
Sbjct: 61 DIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN-----ERVSGNNKIIFEANDILTKE 115
Query: 355 AVIHSKFDIILTSETIYSV--ANYNKLL 380
+ FD+I + + I ++ N NKL
Sbjct: 116 -FPENNFDLIYSRDAILALSLENKNKLF 142
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone
demethylase, catalytic core, oxidoreductase; HET: DNA
AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Length = 373
Score = 35.4 bits (80), Expect = 0.041
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 5/94 (5%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWF---SIIYPRTQLPSWPTEWKPLELVQGPG 439
W P K + ++ + + L + V G
Sbjct: 255 WYSIPQEDRFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEI--VHHEG 312
Query: 440 ETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPV 473
E + +H N +A + NF P+
Sbjct: 313 EFMITYPYGYHAGFNYGYNLAESVNFALEEWLPI 346
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 34.6 bits (80), Expect = 0.050
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
L + ++ VLD+G G+G+L + G + D + V+ N N
Sbjct: 111 LKALARHLRPGD-KVLDLGTGSGVLAIAAEKLGGKALGV-DIDPMVLPQ-AEANAKRN-- 165
Query: 339 NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN 375
+ +F G +A+ FD++ VAN
Sbjct: 166 GVRP-RFLEGS--LEAALPFGPFDLL--------VAN 191
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 34.4 bits (79), Expect = 0.063
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 18/98 (18%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV-------SFQDYNQEVIESLTLPNILMNTDNLEKCKF 345
+LD+G G+G + + F + E L + E+ F
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS---------ERVHF 90
Query: 346 YHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW 383
H D A + K D+ + + +
Sbjct: 91 IHNDAAGYVA--NEKCDVAACVGATWIAGGFAGAEELL 126
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 34.1 bits (78), Expect = 0.068
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE 323
V++G K + L + + S+LDV CG G+ + L + V + + +
Sbjct: 25 VHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRH-LADSFGTVEGLELSAD 83
Query: 324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
++ +HGD S + +F +
Sbjct: 84 MLAIA--------RRRNPDAVLHHGDMRDFS--LGRRFSAVT 115
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 34.1 bits (78), Expect = 0.079
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLY-TLMNGAAHVSFQDYNQEVIESLTLPNILMN 336
L + + D+ + D+G GAG G+ A V+ + +QE+ E ++ +
Sbjct: 28 LASLVADD---RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR-SLELP 83
Query: 337 TDNL--EKCKFYHGDWGS------LSAVIHSKFDIILTS 367
+ + + D + + F ++ +
Sbjct: 84 DNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone
demethylation, oxygenase, chromatin modification; HET:
8XQ; 1.80A {Homo sapiens}
Length = 332
Score = 34.0 bits (77), Expect = 0.099
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 434 LVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
VQ PG+ V++ G H V + N T +
Sbjct: 281 FVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQ 319
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 33.4 bits (76), Expect = 0.10
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 279 LNFIKDNVAVDK-LSVLDVGCGAG-LLGLYTLMNGAAHVSFQDYNQEVIE--SLTLPNIL 334
L + + V+D+GCG G LL L ++ D + V+E L
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371
+ ++ + +D E I
Sbjct: 78 LPEMQRKRISLFQSSLVYRDKRFS-GYDAATVIEVIE 113
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 34.1 bits (77), Expect = 0.10
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 434 LVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
+Q PG+ V++ G H V + + N T
Sbjct: 340 FIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQ 378
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 33.3 bits (76), Expect = 0.12
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 27/128 (21%)
Query: 253 VNISHTDLKPNVYEGGYK---------IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLL 303
+++S TD+ + Y ++ + + + K VLD+GCG G
Sbjct: 1 MSLSGTDIHTSDYYFLFEEKFRGSRELVKARLRRYIPYFKGC-----RRVLDIGCGRGEF 55
Query: 304 GLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-LSAVIHSKFD 362
L D N+++I+ K D L ++ D
Sbjct: 56 -LELCKEEGIESIGVDINEDMIKFCE-----------GKFNVVKSDAIEYLKSLPDKYLD 103
Query: 363 IILTSETI 370
++ S +
Sbjct: 104 GVMISHFV 111
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 33.2 bits (76), Expect = 0.13
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE 323
Y G K + + + + + S+LDV CG G + + + +++
Sbjct: 15 FYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSED 73
Query: 324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
++ L + GD + KF ++
Sbjct: 74 MLTHA--------RKRLPDATLHQGDMRDFR--LGRKFSAVV 105
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin,
oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Length = 108
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 427 TEWKPL----ELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
+ L + G V+ V N+D V VT N C+H N
Sbjct: 2 SNKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAM 51
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.4 bits (76), Expect = 0.14
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
V+D+ G G L L + G A V + + + L NI +N ++ Y+ D +
Sbjct: 129 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVE-DRMSAYNMD--N 184
Query: 353 LSAVIHSKFDIIL 365
+ D IL
Sbjct: 185 RDFPGENIADRIL 197
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 33.6 bits (77), Expect = 0.14
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN 336
+ ++ V VLDV G ++ + GA V D + IE N +N
Sbjct: 206 ENRLALEKWVQPGD-RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIE-TAKENAKLN 263
Query: 337 TDNLEKCKFYHGD 349
++ KF G
Sbjct: 264 -GVEDRMKFIVGS 275
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 33.4 bits (77), Expect = 0.18
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 282 IKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLE 341
+ + A K +VL++ + M GA + D + L+L + N ++
Sbjct: 206 LINGSAAGK-TVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRA-LSLAHFEANHLDMA 263
Query: 342 KCKFYHGD-WGSLSAVI--HSKFDII 364
+ D + H +DII
Sbjct: 264 NHQLVVMDVFDYFKYARRHHLTYDII 289
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac
beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma
cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A*
1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A
3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A*
2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ...
Length = 648
Score = 33.3 bits (75), Expect = 0.19
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 373 VANYNKLLTVWCLFPTHTPKDLL----KVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTE 428
V +YN + W D+L +VT + G + +I W S + + P+
Sbjct: 124 VGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPAEMEG 183
Query: 429 WKPLELVQGPGETVFVPGGWWHV 451
+ + G G + G
Sbjct: 184 MHTNQFLGGAGVAIVASNGNLVY 206
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding
protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A
{Synechocystis SP}
Length = 361
Score = 32.8 bits (74), Expect = 0.21
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
G + P GW H + + A + F
Sbjct: 101 DKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFS 136
Score = 30.1 bits (67), Expect = 1.5
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVV-YHKTIRGRPK--------LSK 487
G+ +VP G+ H + N + ++ + + P +S
Sbjct: 283 QQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWLASNPSSVLGNTFQISP 342
Query: 488 KWYRKLKTR 496
+ +KL +
Sbjct: 343 ELTKKLPVQ 351
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 32.6 bits (74), Expect = 0.26
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 254 NISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAA 313
+ K + + Y D+++ K + VLD+GCG G LY + G
Sbjct: 88 TLGFYCKKEDYFSKKYNTTAIHGDVVDAAKI---ISPCKVLDLGCGQGRNSLYLSLLG-Y 143
Query: 314 HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY 371
V+ D+N+ I L N +NL D + + I +D I+++
Sbjct: 144 DVTSWDHNENSIAFL---NETKEKENL-NISTALYDINAAN--IQENYDFIVSTVVFM 195
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 32.8 bits (74), Expect = 0.27
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 283 KDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEK 342
K + V+D+ G G+ + LM+ A+ + + N E + NI + + +
Sbjct: 87 KSRFIREGTKVVDLTGGLGIDFIA-LMSKASQGIYIERNDETAVAARH-NIPLLLNEGKD 144
Query: 343 CKFYHGDWGS-LSAVIHSKFDIILTSETIYSVANYNKLLTVWC 384
GD+ L + D I S A+ C
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADC 187
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 32.6 bits (73), Expect = 0.29
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 432 LELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNF 465
L+ V PG+ ++ P G+ H D ++
Sbjct: 228 LQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL 261
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 32.5 bits (73), Expect = 0.30
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 434 LVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHT 469
VQ PG+ V++ G H V + N T
Sbjct: 315 FVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLT 350
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 32.5 bits (73), Expect = 0.31
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 386 FPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKP----LELVQGPGET 441
P H + + EG K + P + S E + E + PG+
Sbjct: 153 LPPHYDDVEVFILQLEGEKH----WRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDL 208
Query: 442 VFVPGGWWHVVLNLD 456
++ P G H
Sbjct: 209 LYFPRGTIHQADTPA 223
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP:
b.82.2.11
Length = 342
Score = 32.5 bits (73), Expect = 0.34
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 431 PLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHT 469
+ PG +++P G WH + T+A+ F
Sbjct: 217 AEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPA 255
Score = 30.2 bits (67), Expect = 1.5
Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 27/143 (18%)
Query: 64 SPQEFIEKY-EKPNKPVVIKGVTENWNATYKW-TLEKL--GKKYRNQKFKCGEDNHGYSK 119
+ EF+E+Y KP+V +G E + + + + L N D
Sbjct: 29 TMSEFLEEYWPV--KPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEES 86
Query: 120 LGKKYRNQKFKCGEDNH---GYS---------HPRRKKLLDDYEVPIYFQDDLFQYAGED 167
G R G + P+ ++ ++ + +
Sbjct: 87 EGITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAG-------- 138
Query: 168 KRPPYRWFVMGPARSGTGIHIDP 190
G H D
Sbjct: 139 -TSSKAIVYAAKNGGGFKAHFDA 160
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A
1z0h_A 2nm1_A 3g94_A 1f82_A ...
Length = 1290
Score = 32.5 bits (73), Expect = 0.36
Identities = 24/200 (12%), Positives = 67/200 (33%), Gaps = 15/200 (7%)
Query: 102 KYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEV--PIYFQDD 159
N+ C D + + K K+K ED+ G + Y+ + + +
Sbjct: 300 DRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETN 359
Query: 160 LFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEIL 219
+ + R Y + P + + + + T + ++ D E +
Sbjct: 360 IAENYKIKTRASYFSDSLPPVKI-KNLLDNEIYTIEEGFNISDKDMEKEYRGQN------ 412
Query: 220 TNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDL-----KPNVYEGGYKIWEC 274
I + +++ + + +++ + DL K + + K
Sbjct: 413 KAINKQAYEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIADKNSFSDDLSKNERI 472
Query: 275 TFDL-LNFIKDNVAVDKLSV 293
++ N+I+++ +++L +
Sbjct: 473 EYNTQSNYIENDFPINELIL 492
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 32.3 bits (74), Expect = 0.39
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN 336
+ + V + VLDV G L GA ++ D + E + + L
Sbjct: 203 ENRRLFEAMVRPGE-RVLDVYSYVGGFALRAARKGAYALAV-DKDLEALG-VLDQAALRL 259
Query: 337 TDNLEKCKFYHGDWGSLSAVIHSKFDII 364
++ HG+ + F +
Sbjct: 260 GLRVD---IRHGEALPTLRGLEGPFHHV 284
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 32.0 bits (72), Expect = 0.50
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 30/153 (19%)
Query: 292 SVLDVGCGAGLLGLYT--LMNGAAHVSFQDYNQEVIE-----SLTLPNILMNTDNLEKCK 344
+VLD+GCG G L+ V D +E + + +
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR 145
Query: 345 FYHGDWGSLSAVIH-----SKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTS 399
F G +L+ S DI++++ N L +L+
Sbjct: 146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEI--------HRVLR--- 194
Query: 400 AEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPL 432
+GG+ +FS +Y +L + L
Sbjct: 195 -DGGE------LYFSDVYADRRLSEAAQQDPIL 220
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 31.7 bits (72), Expect = 0.50
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 3/88 (3%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
LD+G G G + + + + + N + +G +
Sbjct: 86 GLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD--NITVKYGSFLE 143
Query: 353 LSAVIHSKFDIILTSETIYSVANYNKLL 380
+ + +D I + + + K+
Sbjct: 144 IP-CEDNSYDFIWSQDAFLHSPDKLKVF 170
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 31.4 bits (71), Expect = 0.54
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 293 VLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIES 327
+LDVG L + + G + + +S
Sbjct: 19 LLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQS 54
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 30.8 bits (70), Expect = 0.59
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
++D GCG G Y L+ A + D N ++ + EK
Sbjct: 20 VIVDYGCGNGFYCKY-LLEFATKLYCIDINVIALKEVK-----------EKFDSVITLSD 67
Query: 352 SLSAVIHSKFDIILTSETIYSVANYNKLL 380
+S D IL + + + + + ++
Sbjct: 68 PKEIPDNS-VDFILFANSFHDMDDKQHVI 95
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 31.4 bits (71), Expect = 0.59
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLY-TLMNGAAHVSFQDYNQEVIESLTLPNILM 335
DLL + L+ D+GCG G T G ++ D + +++E
Sbjct: 24 DLLAQVPLE---RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA------- 73
Query: 336 NTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW 383
D L F D + K D++ + V ++ +L+
Sbjct: 74 -ADRLPNTNFGKADLATWKP--AQKADLLYANAVFQWVPDHLAVLSQL 118
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 31.2 bits (70), Expect = 0.60
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE 326
VL+ GCG G AA + D++ E+++
Sbjct: 51 RVLEAGCGHGPDAAR-FGPQAARWAAYDFSPELLK 84
>3gra_A Transcriptional regulator, ARAC family; transcription regulator,
PSI-II, structural genomics structure initiative; 2.30A
{Pseudomonas putida}
Length = 202
Score = 31.0 bits (71), Expect = 0.64
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 159 DLFQYAGEDKRPPYRWFVM----GPARSGTGIHIDPLGTNPDDGDVKD 202
D+ A + +++ + S G+ + + D
Sbjct: 26 DVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELD 73
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 31.2 bits (71), Expect = 0.65
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGL-YTLMNGAAHVSFQDYN-------QEVIESLT 329
++ N ++ DVG GAG L + HV+ D +++ E+L
Sbjct: 62 AAFYVDFN---QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ 118
Query: 330 LPNI 333
L N
Sbjct: 119 LENT 122
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 31.0 bits (69), Expect = 0.68
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331
WE ++ + + VL+VG G + + N V + L
Sbjct: 45 WE--TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-- 100
Query: 332 NILMNTDNLEKCKFYHGDWG-SLSAVIHSKFDIIL 365
K G W + FD IL
Sbjct: 101 --DWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 31.0 bits (70), Expect = 0.70
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332
E F + K++ + VLD+ CG G+ L G V D ++E++
Sbjct: 26 EIDF-VEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVA---- 79
Query: 333 ILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
+ K +F GD ++ ++FD +
Sbjct: 80 RRKAKERNLKIEFLQGDVLEIA--FKNEFDAVT 110
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 31.2 bits (70), Expect = 0.70
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 294 LDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353
LD G G G + L+ V D ++ + + + ++
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQA---KTYLGEEGKRVRNYFCCGLQDF 140
Query: 354 SAVIHSKFDIILTSETI 370
+ S +D+I I
Sbjct: 141 TPEPDS-YDVIWIQWVI 156
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 31.0 bits (70), Expect = 0.75
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 293 VLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIES 327
+LDVG L ++ L G + +S
Sbjct: 25 LLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQS 60
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.9 bits (69), Expect = 0.78
Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 23/152 (15%)
Query: 293 VLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
+ +G G L L V+ + ++ E L ++ ++ GD
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAE---LSRKVIEGLGVDGVNVITGD-- 180
Query: 352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAIT 411
+ + +FD+++ + ++ + + + + G +
Sbjct: 181 -ETVIDGLEFDVLMVAAL---AEPKRRVFR--NIHRYVDTETRIIYRTYTGMRA------ 228
Query: 412 WFSIIYPRTQLPSWPTEWKPLELVQGPGETVF 443
I+Y T ++ +V P V
Sbjct: 229 ---ILYAPVS-DDDITGFRRAGVVL-PSGKVN 255
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 31.0 bits (69), Expect = 0.90
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 15/156 (9%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQ--DYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349
++ D+ CG L M A + D + ++ + +N + D
Sbjct: 135 TLRDLACGLNPLAAP-WMGLPAETVYIASDIDARLVGFVDEALTRLNVP----HRTNVAD 189
Query: 350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKV-TSAEGGKQRDE 408
L + D+ L +T+ + + + ++P ++ T + G + +
Sbjct: 190 --LLEDRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGM 247
Query: 409 AITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFV 444
+ +Q + LE+ E ++V
Sbjct: 248 FQNYSQSF--ESQARERSCRIQRLEI---GNELIYV 278
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A
{Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A*
2et7_A
Length = 201
Score = 30.6 bits (68), Expect = 0.92
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 438 PGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVV 474
GET +P G H N+ T A + N +V
Sbjct: 125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 30.9 bits (70), Expect = 0.92
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
VLDVGCG G + V+ ++ + N + F + D
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLAN--RVTFSYADAMD 122
Query: 353 LSAVIHSKFDIILTSETIYSVANYNKLL 380
L S FD + E+++ + + + L
Sbjct: 123 LPFEDAS-FDAVWALESLHHMPDRGRAL 149
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 30.6 bits (70), Expect = 0.94
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
L I+ +V D+G G+G +G+ A V D + + +E + N +
Sbjct: 116 LELIRKY---GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVE-IARKNAERH-- 169
Query: 339 NLE-KCKFYHGDWGSLSAVIHSKFDIIL 365
+ + G++ + ++IL
Sbjct: 170 GVSDRFFVRKGEFLEPFKEKFASIEMIL 197
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 30.7 bits (68), Expect = 0.95
Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 21/126 (16%)
Query: 280 NFIK-----------DNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES- 327
N++K ++VLD+GCG G L + D ++
Sbjct: 14 NWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQC 73
Query: 328 ---LTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSK-----FDIILTSETI-YSVANYNK 378
+++ + +F D + + FDI YS +Y +
Sbjct: 74 QQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQ 133
Query: 379 LLTVWC 384
+
Sbjct: 134 ADMMLR 139
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 30.5 bits (69), Expect = 0.95
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES--LTLPNILM 335
+ N+++++ +LD+GCG+G + L L + V+ D N E I + +
Sbjct: 24 IHNYLQED-----DEILDIGCGSGKISLE-LASKGYSVTGIDINSEAIRLAETAARSPGL 77
Query: 336 NTDNLEKCKFYHGD 349
N K +F +
Sbjct: 78 NQKTGGKAEFKVEN 91
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
metal BI protein; 1.75A {Bacillus subtilis} SCOP:
b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
2uya_A 3s0m_A
Length = 385
Score = 31.0 bits (69), Expect = 0.97
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAV 461
G+ +VP H V N+ V
Sbjct: 306 QAGDVGYVPFAMGHYVENIGDEPLV 330
Score = 29.4 bits (65), Expect = 3.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSH 468
G G+ + P G H + L+ F
Sbjct: 127 GEGDLWYFPSGLPHSIQALEEGAEFLLVFDDG 158
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 30.6 bits (69), Expect = 0.98
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE 323
Y + + T + F V VL++ G G L L G V+ + +
Sbjct: 58 TYRDLIQDADGTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLG-WEVTALELSTS 115
Query: 324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
V+ + D ++C GD + + + +F ++
Sbjct: 116 VLAAFRKRLAEAPADVRDRCTLVQGDMSAFA--LDKRFGTVV 155
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta
helix, germin-like PROT protein binding; HET: NAG BMA
MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Length = 163
Score = 30.1 bits (67), Expect = 1.00
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 424 SWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTT 458
S +P E+ T +P H V N D
Sbjct: 80 SLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 30.8 bits (69), Expect = 1.0
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLL--GLYTLMNGAAHVSFQDYNQEVIESLTLPNIL 334
D I + ++ ++DVGCG G + + + D + +I++
Sbjct: 24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE-VIKE 82
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHS-----KFDIILTSETI 370
+ D + F + K D+I E
Sbjct: 83 GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA 123
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 30.4 bits (68), Expect = 1.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 291 LSVLDVGCGAGLLGLY 306
L ++D CG G +
Sbjct: 58 LPLIDFACGNGTQTKF 73
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
+LDVG G G + L + + + ++E + F+HG
Sbjct: 45 ILDVGSGTGRWTGH-LASLGHQIEGLEPATRLVE--------LARQTHPSVTFHHGTITD 95
Query: 353 LSAVIHSKFDIIL 365
L + ++ +L
Sbjct: 96 L-SDSPKRWAGLL 107
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 30.4 bits (68), Expect = 1.2
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 20/101 (19%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSF--QDYNQEVIE-------SLTLPNILMNTDNLEK 342
V V CG L + V DY+ E ++ L +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG---------Q 171
Query: 343 CKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW 383
+ D L +D++ ++ + ++ ++
Sbjct: 172 ITLHRQDAWKLD--TREGYDLLTSNGLNIYEPDDARVTELY 210
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 30.5 bits (69), Expect = 1.2
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 21/118 (17%)
Query: 276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGL-YTLMNGAAHVSFQDYN-------QEVIES 327
D L ++ + L VLD+G GAG GL ++ + D + IE
Sbjct: 67 LDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV 126
Query: 328 LTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCL 385
L L E G + + +VA L L
Sbjct: 127 LGLKGARALWGRAEVLAREAGHRE--------AYARAVAR----AVAPLCVLSE-LLL 171
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 29.8 bits (67), Expect = 1.2
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV-SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
V+D G G + L + V +F D ++ + T + +E +
Sbjct: 26 VVDATMGNGNDTAF-LAGLSKKVYAF-DVQEQALGK-TSQRLSDL--GIENTELILDGHE 80
Query: 352 SLSAVIHSKFDIIL 365
+L + +
Sbjct: 81 NLDHYVREPIRAAI 94
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle,
phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A
{Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A
1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A*
3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCS 467
PG V+VP W H +N+ +
Sbjct: 124 EPGTVVYVPPYWAHRTVNIGDEPFIFLAIYP 154
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 30.1 bits (68), Expect = 1.4
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 15/151 (9%)
Query: 235 SVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKI-WECTFDLLNFIKDNVAVDKLSV 293
+ + F+ T + + +Y+ + W+ DLL + +
Sbjct: 5 KIHHHHHHENLYFQGMTNLGTAKNFWDATLYQDKHSFVWQYGEDLLQLLN---PQPGEFI 61
Query: 294 LDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353
LD+GCG G L + A V D +IE N F D +
Sbjct: 62 LDLGCGTGQLTEK-IAQSGAEVLGTDNAATMIEKA--------RQNYPHLHFDVADARNF 112
Query: 354 SAVIHSKFDIILTSETIYSVANYNKLLTVWC 384
D + ++ ++ V +
Sbjct: 113 RV--DKPLDAVFSNAMLHWVKEPEAAIASIH 141
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 29.9 bits (67), Expect = 1.4
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
VL++ G G + L A V+ D + E+I L+ +F D
Sbjct: 49 DVLELASGTGYWTRH-LSGLADRVTALDGSAEMIA-------EAGRHGLDNVEFRQQDLF 100
Query: 352 SLSAVIHSKFDIILTS 367
+ ++D + +
Sbjct: 101 DWTP--DRQWDAVFFA 114
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.9 bits (67), Expect = 1.5
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 292 SVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIES 327
+ D+G L + + N A+ + +S
Sbjct: 24 RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQS 60
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 29.4 bits (66), Expect = 1.5
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 17/91 (18%)
Query: 275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNIL 334
T+ L++ ++ ++ VLD+G G++ V D N +E
Sbjct: 10 TYTLMDALERE-GLEMKIVLDLGTSTGVITEQLRKR--NTVVSTDLNIRALE-------- 58
Query: 335 MNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
+ D L ++ D+++
Sbjct: 59 ----SHRGGNLVRADL--LCSINQESVDVVV 83
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 29.8 bits (67), Expect = 1.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV 315
VLD+GCG G L L +
Sbjct: 56 VLDLGCGEGWLLRA-LADRGIEA 77
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 30.3 bits (67), Expect = 1.7
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAG--LLGLYTLMNGAAHVSF--QDYNQEVIESLTLPN 332
+ I + + D G+G L + N D +E L++
Sbjct: 309 IISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRL 368
Query: 333 ILMNTDNL---EKCKFYHGDWGSLSAVIHSKFDIILT 366
L+ + D SL+ + +++
Sbjct: 369 GLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVVVM 405
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 29.9 bits (67), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 292 SVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIE 326
VL+ GCG G + N A ++ D + E +E
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLE 75
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 29.9 bits (67), Expect = 1.7
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 291 LSVLDVGCGAGLLGLY--TLMNGAAHVSFQDYNQEVIE 326
+ ++D GCG G LGL L+ + + D + ++
Sbjct: 24 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.8 bits (67), Expect = 1.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE 326
VLD+G GAG D +E++E
Sbjct: 25 VLDIGAGAGHT-ALAFSPYVQECIGVDATKEMVE 57
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 28.8 bits (64), Expect = 2.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAV 461
GPGE +F+P G H +
Sbjct: 84 GPGEAIFIPRGEPHGFVTGPGQTCR 108
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 29.4 bits (66), Expect = 2.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 292 SVLDVGCGAGLLGLY 306
+LD GCG G +G Y
Sbjct: 49 KILDAGCGQGRIGGY 63
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 29.1 bits (65), Expect = 2.3
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESL 328
+L + G G + G V+ D + +
Sbjct: 33 ILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKA 67
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE 326
VLDV G G + V D +++++
Sbjct: 40 EVLDVATGGGHV-ANAFAPFVKKVVAFDLTEDILK 73
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 28.8 bits (65), Expect = 3.1
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGL-YTLMNGAAHVSFQDYN-------QEVIESLT 329
+ +++ +DVG G GL G+ +++ AH + D ++V L
Sbjct: 60 VAPYLQGE------RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK 113
Query: 330 LPNI 333
L NI
Sbjct: 114 LENI 117
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 29.1 bits (65), Expect = 3.1
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES----LTLPNILMNTDNLEKCKFY 346
VLDVGCG G Y L D ++ +I+ P++ F
Sbjct: 55 AEVLDVGCGDGYG-TYKLSRTGYKAVGVDISEVMIQKGKERGEGPDL----------SFI 103
Query: 347 HGDWGSLSAVIHSKFDIILTSETIYSVANYNKLL 380
GD SL F+ I+ ++ + L
Sbjct: 104 KGDLSSLPFENEQ-FEAIMAINSLEWTEEPLRAL 136
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction,
cupin, immune system; 1.40A {Xanthomonas campestris}
PDB: 2ilb_A 3h50_A
Length = 113
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVV-YHKT 478
G + + G H + N T T NF +
Sbjct: 67 QAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPAYDAQGEPLP 109
>3er6_A Putative transcriptional regulator protein; structural genomics,
unknown function, DNA-binding, transcription regulation,
PSI-2; 1.90A {Vibrio parahaemolyticus}
Length = 209
Score = 28.7 bits (65), Expect = 3.3
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 159 DLFQYAG-EDKRPPYRWFVM----GPARSGTGIHIDP 190
++ + A + + V+ P GI + P
Sbjct: 29 EILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQP 65
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 28.9 bits (65), Expect = 3.4
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN--TDNLEKCKFYHGD 349
LD+ CG G L + D +QE++ N K + D
Sbjct: 40 DYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLS------EAENKFRSQGLKPRLACQD 92
Query: 350 WGSLSAVIHSKFDIIL 365
+L+ I+ KFD+I
Sbjct: 93 ISNLN--INRKFDLIT 106
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.7 bits (64), Expect = 3.5
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 293 VLDVGCGAGLLGLYTLMNGAAHV 315
+ D+G G G L N V
Sbjct: 38 IADIGAGTGGY-SVALANQGLFV 59
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 29.0 bits (64), Expect = 3.5
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAV 461
G+ VP H D +
Sbjct: 99 SSGDYGSVPRNVTHTFQIQDPDTEM 123
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 28.7 bits (64), Expect = 3.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 292 SVLDVGCGAGLLGLY 306
+L++GCGAG
Sbjct: 46 KILELGCGAGYQAEA 60
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 29.0 bits (64), Expect = 4.0
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 19/121 (15%)
Query: 280 NFIK-----------DNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESL 328
N++K +K VL + G G A + D + + I
Sbjct: 28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARG 87
Query: 329 TLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPT 388
++ K K+Y D+ + + ++ V + K + F
Sbjct: 88 N--ERYNKLNSGIKTKYYKFDYIQETIRSDT------FVSSVREVFYFGKFNIIDWQFAI 139
Query: 389 H 389
H
Sbjct: 140 H 140
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 4.2
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 256 SHTDLKPNVYEGGYKIWECTFDL--LNFIKDNVAVDKL----SVLDVGCGAGLL 303
H +++E +E F + ++ + AV L +++G G G
Sbjct: 8 HHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRF 61
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 28.7 bits (65), Expect = 4.2
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 289 DKLSVLDVGCGAGLLGLYTL--MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLE-KCKF 345
L++G G + + V+ + ++E E NI N N +
Sbjct: 55 GGEVALEIGTGHTAMMA-LMAEKFFNCKVTATEVDEEFFE-YARRNIERN--NSNVRLVK 110
Query: 346 YHGDWGSLSAVIHSKFDIILT 366
+G + V+ FD+I +
Sbjct: 111 SNGGI--IKGVVEGTFDVIFS 129
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 28.3 bits (64), Expect = 4.3
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 293 VLDVGCGAG----LLGLYTLMNGAAHVSFQDYNQEVIESL------TLPNILMNTDNLEK 342
LDVG G+G ++ V + I+ L + + +
Sbjct: 81 ALDVGSGSGILTACFAR--MVGCTGKV----IGIDHIKELVDDSVNNVRKDDPTLLSSGR 134
Query: 343 CKFYHGDWGSLSAVIHSKFDIIL 365
+ GD G + + +D I
Sbjct: 135 VQLVVGD-GRMGYAEEAPYDAIH 156
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 28.3 bits (63), Expect = 4.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 292 SVLDVGCGAGLLGLYTLMNGAAHV 315
+VL+ G G G L L+ V
Sbjct: 48 NVLEFGVGTGNL-TNKLLLAGRTV 70
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase,
divale metal cation dependent, carbohydrate esterase
family 4; 1.45A {Streptococcus mutans UA159}
Length = 311
Score = 28.7 bits (64), Expect = 4.8
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 12/50 (24%)
Query: 135 NHGYSHPRRKKLLDDYEVPIYFQDDL-------FQYAGEDK-----RPPY 172
H +SH + ++ G++ R P
Sbjct: 165 IHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGVWRYPG 214
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 28.3 bits (63), Expect = 4.9
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 249 YETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTL 308
++ + + P + + + + L + + VLD+ CG G L
Sbjct: 3 FKEYYRVF-----PTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFL-L 56
Query: 309 MNGAAHVSFQDYNQEVIE 326
+ V D ++++I
Sbjct: 57 EDYGFEVVGVDISEDMIR 74
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.3 bits (63), Expect = 5.0
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAG 301
++ +++ + +VLD+GCG G
Sbjct: 68 QPLRDAIVAQLRERLDDKATAVLDIGCGEG 97
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 28.7 bits (63), Expect = 5.2
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 289 DKLSVLDVGCGAGLLGL--YTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY 346
+ V D +G+ + + D + + IE + N +N ++ + +
Sbjct: 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIE-IMKENFKLNNIPEDRYEIH 110
Query: 347 HGD 349
+
Sbjct: 111 GME 113
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 28.2 bits (63), Expect = 5.4
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLY 306
+ + ++ + V K + D+GCG G L
Sbjct: 22 EWVAWVLEQVEPGK-RIADIGCGTGTATLL 50
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 28.4 bits (62), Expect = 6.4
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 434 LVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
+ Q GE + +H N A NF +
Sbjct: 264 ITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 302
>2de6_D Ferredoxin component of carbazole; electron transfer complex,
rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D
1vck_A 2de7_D*
Length = 115
Score = 26.9 bits (60), Expect = 8.0
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 427 TEWKPL----ELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP 472
W + ++ G V G V + T++ C+H
Sbjct: 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIAS 52
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin,
tetramer, montreal- bacterial structural genomics
initiative, BSGI; 2.41A {Escherichia coli} SCOP:
b.82.1.23
Length = 354
Score = 27.8 bits (61), Expect = 8.1
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
G+ + P WH N + + + P+V
Sbjct: 144 NEGDFILTPQWRWHDHGNPGDEPVI---WLDGLDLPLVNI 180
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 27.8 bits (61), Expect = 9.5
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 437 GPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
G+ + PG +H +N + + P
Sbjct: 147 SRGDLLLTPGWCFHGHMNDTDQPMA---WIDGLDIPFSQQ 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.425
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,747,408
Number of extensions: 468744
Number of successful extensions: 1355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 167
Length of query: 496
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 399
Effective length of database: 3,993,456
Effective search space: 1593388944
Effective search space used: 1593388944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)