RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11731
(538 letters)
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 465 bits (1200), Expect = e-162
Identities = 196/458 (42%), Positives = 257/458 (56%), Gaps = 81/458 (17%)
Query: 54 NTGQAKNVIMFVGDGMGINTITASRIYKEG----EFGKLSFEHFPHVGLMKTYCVDKQVP 109
N +AKNVI+F+GDGMG++TITA+RIYK E GKL F+ FP GL KTY VD QV
Sbjct: 2 NKKKAKNVILFIGDGMGVSTITAARIYKGQENGAEEGKLLFDDFPLTGLSKTYSVDSQVT 61
Query: 110 DSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGFVTT 169
DSA+TATA GVK+N GV A V +D + V SV+EWA+ AGK TG VTT
Sbjct: 62 DSAATATAYATGVKTNNGAIGVSADVSRDD----TDNGKPVTSVLEWAKAAGKATGIVTT 117
Query: 170 TRITHATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQC 229
TR+THATP+A Y+H R WE +DIA QL+E+ PG+ I V++GGGR+
Sbjct: 118 TRVTHATPAAFYAHVPDRNWE-------------EDIAEQLIEEAPGRGIDVLLGGGRRY 164
Query: 230 MITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTDF 289
+ +++ R+DG+DL+ EW + Y+YV + EL +NV TD
Sbjct: 165 FLPSTTGG----------GRKDGRDLIAEW------KAKGYQYVWNRTELLAVNV-ATDK 207
Query: 290 LLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRG 349
LLG+FA+ H E DRD G PSL +MT A+ +L K+ GF L+VEGG ID+AHH
Sbjct: 208 LLGLFADSHLPYELDRDPFGKGEPSLAEMTEKAIDVLSKNPNGFFLMVEGGRIDHAHHAN 267
Query: 350 KARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGI- 408
A AL ETL+FD A+E + ++ +TLV+VTADH HG ++ GY RGN I G+
Sbjct: 268 DAAGALSETLAFDDAVEAALDFAKK---DGDTLVVVTADHSHGGTILGYAGRGNPILGLA 324
Query: 409 -AMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILNNEV 467
A +D +P+TTLTYA +
Sbjct: 325 DAPELDVDGLPYTTLTYANTTGT------------------------------------- 347
Query: 468 AHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAKI 505
HGG DVPV+A GP +HLF GV E +A +AYA +
Sbjct: 348 -HGGEDVPVFAYGPGSHLFRGVMENTEIAHVMAYALGL 384
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues.
Length = 419
Score = 438 bits (1129), Expect = e-151
Identities = 204/455 (44%), Positives = 265/455 (58%), Gaps = 43/455 (9%)
Query: 59 KNVIMFVGDGMGINTITASRIYKEGEFGK------LSFEHFPHVGLMKTYCVDKQVPDSA 112
KNVI+F+GDGMG++TITA+RI K GK L+F+ FP L KTY D QV DSA
Sbjct: 1 KNVILFIGDGMGVSTITAARILKGQAGGKLGEETLLAFDQFPTGALSKTYNPDYQVTDSA 60
Query: 113 STATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGFVTTTRI 172
+TATA CGVK+ GVDA +V SV+EWA++AGK TG VTTTRI
Sbjct: 61 ATATAYLCGVKTYNGAIGVDAAT-----------GKEVPSVLEWAKKAGKSTGLVTTTRI 109
Query: 173 THATPSALYSHSASRKWECDDRLPALAMNQ-CKDIARQLVEDEPGKNIRVIMGGGRQCMI 231
THATP+A Y+H ASRKW D +PA A+ C DIARQL+ + I V++GGGR
Sbjct: 110 THATPAATYAHVASRKWYNDADIPAEALENGCGDIARQLINNR----IDVLLGGGRSYFA 165
Query: 232 TNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTDFLL 291
+ DPE + RRDG++L++EW + Y+YV EL + +K D LL
Sbjct: 166 PTGT---ADPEGQ-RGTRRDGRNLIEEW------KAAGYQYVWDRTELLAVGANKVDPLL 215
Query: 292 GIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKA 351
G+FA+G E DRD PSL +MT A++LL K++ GF L+VEGG ID+AHH A
Sbjct: 216 GLFADGDMPYEIDRDS---TEPSLAEMTEVAIRLLSKNERGFFLMVEGGRIDHAHHENDA 272
Query: 352 RRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMP 411
AL ET+ FD AI+ + ++ DETLV+VTADH H + GY RGN+I+G+A
Sbjct: 273 CGALHETVDFDQAIQAALEFAKKE---DETLVIVTADHSHVGTFGGYSLRGNDIFGLAPS 329
Query: 412 SRIDNVPFTTLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILNNEVAHGG 471
D P+ TL Y G Y S R + +KA+ S +Y Q + + H G
Sbjct: 330 LDADRKPY-TLAYKNG--PGYVVKD--SNGIRPNVTKAEIGSPEYRAQTAVPLDSETHTG 384
Query: 472 GDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAKIG 506
DV V+A GP AHLF GV EQ Y+A +AYA +G
Sbjct: 385 EDVAVFAYGPHAHLFRGVQEQTYIAHVMAYALCLG 419
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 395 bits (1017), Expect = e-134
Identities = 191/461 (41%), Positives = 256/461 (55%), Gaps = 53/461 (11%)
Query: 58 AKNVIMFVGDGMGINTITASRIYKEGEFGK-----LSFEHFPHVGLMKTYCVDKQVPDSA 112
AKNVI+F+GDGMG++TITA+RI K GK L+ + FP VGL KTY VDKQV DSA
Sbjct: 1 AKNVILFIGDGMGVSTITAARILKGQAKGKLGPETLAMDRFPLVGLSKTYNVDKQVTDSA 60
Query: 113 STATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGFVTTTRI 172
+TATA CGVK+ GVD +V SV+E A++AGK TG VTTTRI
Sbjct: 61 ATATAYLCGVKTYNGAIGVDTH------------GKEVPSVLEAAKKAGKSTGLVTTTRI 108
Query: 173 THATPSALYSHSASRKWECDDRLPALAMNQ-CKDIARQLVEDEPGKNIRVIMGGGRQCMI 231
THATP+A Y+H +RKW D +PA A+++ CKDIA QL+ + I V++GGGR
Sbjct: 109 THATPAATYAHVTNRKWYGDIAMPASALDEGCKDIAHQLISNRH--KIDVLLGGGR---- 162
Query: 232 TNSSFSPRDPEDEWSCK--RRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDK-TD 288
F P D + + R DG++L+QEW + Y+YV EL
Sbjct: 163 --KYFFPTGTPDPYGQRGTRLDGRNLIQEW------KHAGYQYVWDRTELLKAKDSPSVT 214
Query: 289 FLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHR 348
LLG+FA+G E RD P PSL++MT A++LL ++ GF L+VEGG ID+AHH
Sbjct: 215 PLLGLFADGDMPYEIPRD--PATDPSLKEMTEVAIRLLSRNPKGFFLMVEGGRIDHAHHE 272
Query: 349 GKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGI 408
A AL ET+ FD A++ + + +TLV+VTADH H S GY RG I+G+
Sbjct: 273 NDACGALGETVDFDQAVKAALEFAKSE---KDTLVVVTADHSHVFSFGGYTPRGWSIFGL 329
Query: 409 A-MPSRIDNVPFTTLTYATGSKDNYKYFRYGSGI---NREDPSKADFASFDYNQQAGILN 464
A + D + F + Y G G + R + + A+ + Y ++ +
Sbjct: 330 APAKATPDGMAFKLILYGNG---------PGYKVEDGARPNVTAAESINNIYRTRSAVPL 380
Query: 465 NEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAKI 505
H G DVPV+A GP AHL HGV EQ Y+A +A A +
Sbjct: 381 TSETHTGEDVPVFAYGPQAHLVHGVQEQTYIAHVMAAALCL 421
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
metabolism].
Length = 482
Score = 302 bits (775), Expect = 5e-97
Identities = 157/483 (32%), Positives = 223/483 (46%), Gaps = 73/483 (15%)
Query: 43 SEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGKLSF------EHFPHV 96
S ++L + G+AKNVI+ +GDGMG +T+TA+R YK G G
Sbjct: 44 SSFTQALAAAASAGKAKNVILLIGDGMGPSTVTAARSYKGGPNGPFKGIDTLPDTGLI-- 101
Query: 97 GLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEW 156
G T+ D V DSA+ ATA GVK+ GVD + + +++E
Sbjct: 102 GTYSTHSSDSNVTDSAAAATAFATGVKTYNGAIGVDP------------NGKPLKTILEL 149
Query: 157 AQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEP- 215
A+ AGK TG VTTTRITHATP+A +H SR E +IA Q +
Sbjct: 150 AKEAGKATGLVTTTRITHATPAAFAAHVTSRDDE-------------DEIATQQICPGNA 196
Query: 216 GKNIR--VIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYV 273
G+N + V++GGGR F P+ +R DG+DL++E GY Y V
Sbjct: 197 GRNDKVDVLLGGGR------KYF---LPKATAGGRRDDGRDLIEEAK----AAGYQY--V 241
Query: 274 THTEELDMLNVDKTDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGF 333
EL+ ++ + D LLG+FA+GH DRD+ P PSL +MT A+ LL K+K GF
Sbjct: 242 ETRAELNAVSN-QDDKLLGLFADGHLPPNLDRDRDPNDEPSLAEMTEKAIDLLSKNKKGF 300
Query: 334 LLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGL 393
L+VEGG ID+A H A+ ET++FD A++ + E+ G TLV+VTADH+ G
Sbjct: 301 FLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKDG---NTLVIVTADHETGG 357
Query: 394 ----SMSGYPNRGNEIYGIA-----MPSRIDNVPFTTLTYATG-----SKDNYKYFRYGS 439
Y + + I + +I + Y + + K
Sbjct: 358 LTIGRDGVYEWKPDPIKNAKHTGLGLAKKIADGAHLPDVYGNYTGIELTDETPKEIE--E 415
Query: 440 GINREDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAV 499
+N + A G H G DVP++A GP A F GV + + A+
Sbjct: 416 ALNAPNSIDIIGAIISERALIGW--TTHGHTGEDVPIFAYGPGAENFRGVMDNTEIFQAI 473
Query: 500 AYA 502
A A
Sbjct: 474 AAA 476
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 157 bits (398), Expect = 3e-42
Identities = 120/375 (32%), Positives = 167/375 (44%), Gaps = 77/375 (20%)
Query: 54 NTGQAKNVIMFVGDGMGINTITASRIYKEGEFGKLS-FEHFPHVGLMKTYCVDKQ----- 107
+ AKNVI+ +GDGMG + ITA+R Y EG G + P G Y ++K+
Sbjct: 65 SNKPAKNVILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPD 124
Query: 108 -VPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGF 166
V DSA++ATA GVK+ GVD K +++E A+ AGK TG
Sbjct: 125 YVTDSAASATAWSTGVKTYNGALGVDIHGKDHP------------TLLELAKAAGKATGN 172
Query: 167 VTTTRITHATPSALYSHSASRKWECDDRLPALAMNQCKD----------IARQLVEDEPG 216
V+T + ATP+AL +H SRK C P +C I QL+
Sbjct: 173 VSTAELQDATPAALVAHVTSRK--CYG--PEETSEKCPGNALENGGRGSITEQLLNTRAD 228
Query: 217 KNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHT 276
V +GGG + +F+ EW GK L +E A RGY + V
Sbjct: 229 ----VTLGGGAK------TFAETATAGEWK-----GKTL-REQAKA---RGY--QLVEDA 267
Query: 277 EELDMLNVDKTDF-LLGIFANGH--TKME------HD-RDKSPT----------GTPSLE 316
+ L+ + D LLG+FA+G+ + H DK P P+L
Sbjct: 268 DSLNAVTEANQDKPLLGLFADGNMPVRWLGPKATYHGNLDKPPVTCTPNPQRTADVPTLA 327
Query: 317 QMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERG 376
QMT A+ LL K++ GF L VEG ID H + ET+ D A+++ + + G
Sbjct: 328 QMTDKAIDLLKKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDG 387
Query: 377 LLDETLVLVTADHDH 391
TLV+VTADH H
Sbjct: 388 ---NTLVIVTADHAH 399
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 48.2 bits (115), Expect = 6e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 312 TPSLEQMTSTALQLLMKS-KAGFLLVVEGGLIDYAHHR-GKARRALDETLSF-DLAIERT 368
P ++ + + L+LL+ + + LLV D H+ G +++ L D AI R
Sbjct: 145 EPRVDTVLTDWLKLLLDAERPDLLLVYLEE-PDRVGHKYGPDSPEVEDALRRVDRAIGRL 203
Query: 369 MALLEERGLLDETLVLVTADH 389
+ L+ERGLL+ T V+V +DH
Sbjct: 204 LEALDERGLLENTNVIVVSDH 224
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 42.7 bits (101), Expect = 4e-04
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 343 DYAHHRGKARRALDETLSF-DLAIERTMALLEERGLLDETLVLVTADH-----DHGLSMS 396
+YA AR A ++ D I R + L+E GLLD T++L +DH DH L
Sbjct: 261 EYARR---ARAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDMLGDHYLFRK 317
Query: 397 GYPNRG 402
GYP G
Sbjct: 318 GYPYEG 323
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 40.2 bits (94), Expect = 0.002
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 325 LLMKSKAGFLLVVEGGLIDYAHHR-GKARRALDETL-SFDLAIERTMALLEERGLLDETL 382
LL+ LL+V ID H+ G E + D + + LL++RGL +E L
Sbjct: 211 LLLDRADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYL 270
Query: 383 VLVTADHDH 391
V++T+DH
Sbjct: 271 VIITSDHGM 279
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 38.2 bits (89), Expect = 0.009
Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 25/131 (19%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTT 421
D AI R + LE GLLD TLV+ T+DH L GY + G A VP
Sbjct: 212 DDAIGRVLEKLEN-GLLDNTLVVYTSDHGPSLGGGGYLHGGK--TDNAPEGGY-RVPL-- 265
Query: 422 LTYATGSKDNYKYFRYGSGINREDPSKADFASFDY-----NQQAGILNNEVAHGGGDVPV 476
+ G + S AGIL ++ G D+
Sbjct: 266 -------------LIWSPGGKPKGQKNEALVSHVDLFPTILDLAGILTEDLLLDGKDLLP 312
Query: 477 YATGPMAHLFH 487
G L+
Sbjct: 313 TLEGK-QELYD 322
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 37.1 bits (86), Expect = 0.025
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRG--NEIY--GIAMP 411
D I R + L+E GLLD T+V+ T+DH L G P RG +Y G +P
Sbjct: 270 DDQIGRLLDALKELGLLDNTIVVFTSDHGAWLGAHGTPFRGYKGTLYEGGTRVP 323
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 36.3 bits (84), Expect = 0.040
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTT 421
D A+ + + L++ GL +++++ DH +G+S + + + VP
Sbjct: 464 DEALGQFIDKLKKSGLYKNSVIVLYGDH-YGISGNQNLAMPKFLGKSYDIDMLQRVPL-- 520
Query: 422 LTYATGSKDNYKYFRYGSGINRED--PSKADFASFDYNQQA 460
L +A G K+ K G + D P+ A
Sbjct: 521 LIHAPGIKNKKKIDTVGGQL---DIAPTILGLLGISTKSYA 558
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 35.8 bits (83), Expect = 0.056
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 350 KARRALDETLSF-DLAIERTMALLEERGLLDETLVLVTADH 389
+ARRA +S+ D I + LEE D+T+++ T+DH
Sbjct: 250 RARRAYFGAISYIDDKIGELLDTLEETRQADDTIIVFTSDH 290
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase.
Length = 298
Score = 33.7 bits (78), Expect = 0.19
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 44 EVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEG 83
EV K K N +MFVGDG G IT S + +G
Sbjct: 44 EVPK---KKTN-------VMFVGDGPGKTIITGSLNFIDG 73
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 33.4 bits (76), Expect = 0.20
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 323 LQLLMKSKAGFLLVVE----GGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLL 378
L ++++ K G +V E G L+DY RG++ D L F L + M LE +
Sbjct: 65 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFV 124
Query: 379 DETL----VLVTADH-----DHGLS 394
L VLV+ D+ D GL+
Sbjct: 125 HRDLAARNVLVSEDNVAKVSDFGLT 149
>gnl|CDD|181972 PRK09588, PRK09588, hypothetical protein; Reviewed.
Length = 376
Score = 31.9 bits (73), Expect = 0.75
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 23/71 (32%)
Query: 173 THATPSALYS--HSASRKW---ECDDRLPA------LAMNQ------CKDIARQLV-EDE 214
A+ +L+S H A RKW EC RL A L+ C+D RQL+ E+
Sbjct: 282 PVASEESLFSLAHGAGRKWMRTECKGRLAAKFTVTQLSRTPLGSRVICRD--RQLIFEEA 339
Query: 215 PG--KNI-RVI 222
P K+I VI
Sbjct: 340 PEAYKSIESVI 350
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase
inhibitor.
Length = 530
Score = 31.9 bits (72), Expect = 0.88
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 59 KNVIMFVGDGMGINTITASRIYKEG 83
K +IMF+GDG+G I A+R +G
Sbjct: 267 KTMIMFIGDGIGKTVIKANRSRIDG 291
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 32.0 bits (73), Expect = 0.91
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADH 389
D I R + L GLLD T+V++TADH
Sbjct: 433 DSQIGRVLEQLRNSGLLDNTVVIITADH 460
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 31.2 bits (71), Expect = 1.3
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 27/109 (24%)
Query: 299 TKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVE----GGLIDYAHHRGKARRA 354
T + H P+L Q+ LQ +V E G L+DY RG+A
Sbjct: 55 TTLRH---------PNLVQLLGVVLQ-----GNPLYIVTEYMAKGSLVDYLRSRGRAVIT 100
Query: 355 LDETLSFDLAIERTMALLEERGLLDETL----VLVTAD-----HDHGLS 394
L + L F L + M LEE+ + L VLV+ D D GL+
Sbjct: 101 LAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLA 149
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase
inhibitor.
Length = 520
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 50 QNKWNTGQAKNVIMFVGDGMGINTITASRIYKEG 83
+ KWN IM VGDG+ IT +R + +G
Sbjct: 253 KKKWN-------IMMVGDGIDATVITGNRSFIDG 279
>gnl|CDD|219398 pfam07394, DUF1501, Protein of unknown function (DUF1501). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 400 residues
long.
Length = 393
Score = 30.7 bits (70), Expect = 1.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 372 LEERGLLDETLVLVTAD 388
L++RGLLD+TLV+ +
Sbjct: 285 LKQRGLLDDTLVVWGGE 301
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 30.4 bits (69), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDH 391
D + + L ERGLL+ T+V+ +DH
Sbjct: 312 DEDLLNYLKKLHERGLLENTIVIFMSDHGL 341
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 29.9 bits (67), Expect = 3.2
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 335 LVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETL----VLVTAD-- 388
L+ +G L+++ RG+A ++ + L F L + M LE + L+ L +LV+ D
Sbjct: 79 LMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGV 138
Query: 389 ---HDHGLSMSG 397
D GL+ G
Sbjct: 139 AKVSDFGLARVG 150
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 30.2 bits (69), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 193 DRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGR 227
R+ ALA Q DI +L + +RVI G GR
Sbjct: 85 ARVKALAAAQSADIRARLERE----GVRVIAGRGR 115
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 29.5 bits (67), Expect = 3.5
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 355 LDETLS-FDLAIERTMALLEERGLLDE---TLVLVTADHDHGLSMSGYP---NRGNEIYG 407
LDE L DL + + M LE + L E T V VT D + L+MS N+G +I
Sbjct: 154 LDEPLGALDLKLRKDM-QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG-KIQQ 211
Query: 408 IAMPSRIDNVPFTT 421
I P I P
Sbjct: 212 IGTPEEIYEEPANR 225
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase
inhibitor.
Length = 587
Score = 29.9 bits (67), Expect = 4.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 50 QNKWNTGQAKNVIMFVGDGMGINTITASR 78
+N G+ K +MF+GDG G IT +
Sbjct: 313 ENNLKVGRKKTNLMFIGDGKGKTVITGGK 341
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase
inhibitor.
Length = 537
Score = 29.9 bits (67), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 59 KNVIMFVGDGMGINTITASRIYKEG 83
K IM VGDG+G +T +R + +G
Sbjct: 281 KTNIMLVGDGIGQTVVTGNRNFMQG 305
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy
production and conversion].
Length = 432
Score = 29.5 bits (66), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 13 VFLMYLNSV-TSRLADSEILEDKDFWYSNA 41
+F YLN + + RL S KDFW +N
Sbjct: 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNL 347
>gnl|CDD|227130 COG4792, EscU, Type III secretory pathway, component EscU
[Intracellular trafficking and secretion].
Length = 349
Score = 29.3 bits (66), Expect = 5.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 320 STALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRAL 355
S L+LL A LV + DYA R + + L
Sbjct: 181 SFLLRLLWVGVAVGYLVF--SVADYAFQRYQILKEL 214
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein.
Length = 502
Score = 29.5 bits (66), Expect = 5.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 40 NARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEG 83
N + E+++ ++N +MFVGDGM IT +R +G
Sbjct: 230 NEKVEIDRHMKN----------VMFVGDGMDKTIITNNRNVPDG 263
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 28.7 bits (65), Expect = 5.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 484 HLFHGVHEQNYVAFAVAYAAKIGPYSNA 511
LF G+ + +Y F +YA + Y+ A
Sbjct: 128 PLFQGIEDGSYFYFVHSYAMPVNEYTIA 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.396
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,083,776
Number of extensions: 2633298
Number of successful extensions: 2120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2083
Number of HSP's successfully gapped: 35
Length of query: 538
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 436
Effective length of database: 6,413,494
Effective search space: 2796283384
Effective search space used: 2796283384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)