RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11731
(538 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 575 bits (1484), Expect = 0.0
Identities = 190/488 (38%), Positives = 276/488 (56%), Gaps = 21/488 (4%)
Query: 32 EDKDFWYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGK---- 87
EDK +W +A+ ++K L K QAKNVI F+GDGM ++T+TA+RIYK G GK
Sbjct: 2 EDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFERE 61
Query: 88 -LSFEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSS 146
+S+E F L KTY DKQV DSA++ATA GVK+N G+DA +C L
Sbjct: 62 KISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDE 121
Query: 147 ESKVDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAMN--QCK 204
S+ W Q AG+ TG VT+TR+THATP+ Y+H A R WE D + + C
Sbjct: 122 SLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICD 181
Query: 205 DIARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKT 264
DIA QLV EPGKN +VIMGGGR+ D ED +R DGK L+ +W DK
Sbjct: 182 DIAEQLVFREPGKNFKVIMGGGRRGFFPE---EALDIEDGIPGEREDGKHLITDWLDDKA 238
Query: 265 RRGYSYKYVTHTEELDMLNVDKTDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQ 324
+G + YV + ++L +++ TD+L+G+F+ H RD P+L +MT A++
Sbjct: 239 SQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRD--AEMDPTLPEMTKVAIE 296
Query: 325 LLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVL 384
+L K + GF L+VEGG ID+ HH + R++L ETL + A+ +++ + +ET++L
Sbjct: 297 MLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDP----EETIIL 352
Query: 385 VTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGINRE 444
VTADH H L+++GY +R +I A S +D+ +T L Y +G + R
Sbjct: 353 VTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPG-----YHITEDGKRY 407
Query: 445 DPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAK 504
+P++ D ++ + + H G DV ++ GP AHLF GV+E+NY+ A+AYAA
Sbjct: 408 EPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAAC 467
Query: 505 IGPYSNAC 512
+G C
Sbjct: 468 VGTGRTFC 475
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 535 bits (1379), Expect = 0.0
Identities = 202/495 (40%), Positives = 277/495 (55%), Gaps = 30/495 (6%)
Query: 32 EDKDFWYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYK------EGEF 85
E+ DFW A + + + + AKN+I+F+GDGMG++T+TA+RI K G
Sbjct: 7 ENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPE 66
Query: 86 GKLSFEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLS 145
L+ + FP+V L KTY VDK VPDS +TATA CGVK N T G+ A + C +
Sbjct: 67 IPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRG 126
Query: 146 SESKVDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAM-NQCK 204
+E V SV+ A++AGK G VTTTR+ HA+P+ Y+H+ +R W D +PA A C+
Sbjct: 127 NE--VISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQ 184
Query: 205 DIARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDE-WSCKRRDGKDLVQEWALDK 263
DIA QL+ +I VI+GGGR+ M + P P+D R DGK+LVQEW +
Sbjct: 185 DIATQLIS---NMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKR 241
Query: 264 TRRGYSYKYVTHTEELDMLNVDK-TDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTA 322
+YV + EL ++D L+G+F G K E RD T PSL +MT A
Sbjct: 242 Q----GARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRD--STLDPSLMEMTEAA 295
Query: 323 LQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETL 382
L+LL ++ GF L VEGG ID+ HH +A RAL ET+ FD AIER L E ++TL
Sbjct: 296 LRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSE----EDTL 351
Query: 383 VLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGIN 442
LVTADH H S GYP RG+ I+G+A D +T L Y G Y
Sbjct: 352 SLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNG--PGYVLKDGA---- 405
Query: 443 REDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYA 502
R D ++++ S +Y QQ+ + +E H G DV V+A GP AHL HGV EQ ++A +A+A
Sbjct: 406 RPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFA 465
Query: 503 AKIGPYSNACIKSSS 517
A + PY+ + +
Sbjct: 466 ACLEPYTACDLAPPA 480
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 420 bits (1082), Expect = e-144
Identities = 119/498 (23%), Positives = 188/498 (37%), Gaps = 99/498 (19%)
Query: 37 WYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGK-------LS 89
+ +L++ + AKN+I+ +GDGMG + ITA+R Y EG G
Sbjct: 21 GARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL 80
Query: 90 FEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESK 149
+ H L K V DSA++ATA GVK+ GVD K
Sbjct: 81 TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEK------------D 128
Query: 150 VDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAMNQ--CKDIA 207
+++E A+ AG TG V+T + ATP+AL +H SRK K
Sbjct: 129 HPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGK 188
Query: 208 RQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRG 267
+ E V +GGG + +F+ GK L ++ RG
Sbjct: 189 GSITEQLLNARADVTLGGGAK------TFAETATAG-----EWQGKTLREQAQ----ARG 233
Query: 268 YSYKYVTHTEELDMLN-VDKTDFLLGIFANGHTKMEHDRDKS------------------ 308
Y V+ L+ + ++ LLG+FA+G+ + K+
Sbjct: 234 YQL--VSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQ 291
Query: 309 -PTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIER 367
P+L QMT A++LL K++ GF L VEG ID H + ET+ D A++R
Sbjct: 292 RNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQR 351
Query: 368 TMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATG 427
+ ++ G TLV+VTADH H + + G+ + ++Y
Sbjct: 352 ALEFAKKEG---NTLVIVTADHAHASQIVAPDTKAP---GLTQALNTKDGAVMVMSYGNS 405
Query: 428 SKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFH 487
+D+ + H G + + A GP A
Sbjct: 406 EEDSQE-----------------------------------HTGSQLRIAAYGPHAANVV 430
Query: 488 GVHEQNYVAFAVAYAAKI 505
G+ +Q + + + A +
Sbjct: 431 GLTDQTDLFYTMKAALGL 448
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 421 bits (1084), Expect = e-143
Identities = 121/498 (24%), Positives = 182/498 (36%), Gaps = 79/498 (15%)
Query: 36 FWYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKE------------- 82
S+ + + + + A N I ++ DGMG I+A+R
Sbjct: 25 VAGGAVASQFQTTARAQATASPAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVS 84
Query: 83 GEFGKLSFEHFPHVGLMKTYCVD--KQVPDSASTATALFCGVKSNMHTAGVDARVKTEDC 140
F+ F G M T+ D + DSA+ ATA GVK+ G
Sbjct: 85 PAETPTGFDAFSSRGSMTTFPDDPYETTTDSAAAATAFASGVKTYNGAIGGV-------- 136
Query: 141 EASLSSESKVDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAM 200
+ S +VD+V+E A G TG +TTT THATP+A +H R +
Sbjct: 137 QTSGGGFQRVDTVLERASAQGYATGLITTTEATHATPAAFAAHVEDRGNQ---------- 186
Query: 201 NQCKDIARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWA 260
+IARQ +E+ VI+GG R+ F +G LV
Sbjct: 187 ---TEIARQYIEE---TQPDVILGGQRR------DFEA---------DASNGGTLVDAA- 224
Query: 261 LDKTRRGYSYKYVTHTEELDMLNVDKTDFLLGIFAN-GHTKMEHDRDKSPTGT-PSLEQM 318
R Y ELD ++ +LG+F+ H DR P T P+L+ M
Sbjct: 225 -----RDNGYTIAETAAELDAVDDPP---VLGLFSQESHLDYYLDRKNDPENTQPNLDAM 276
Query: 319 TSTALQLLMKSKA---GFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEER 375
+ LL + GF L+VE G +D+A H + E + + E
Sbjct: 277 VDAGVDLLSSAGDPDKGFFLLVESGRVDHAGHANYPAQVA-EQYEATQVAGQLVEYAETT 335
Query: 376 GLLDETLVLVTADHDHG-LSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKY 434
+ T ++ T DH+ G L++ E +A + L + +
Sbjct: 336 A--EPTFLVSTGDHECGGLTLGRDSPYEVEYDVLAAQKATTSRLRDLLAGVRSADELESI 393
Query: 435 FRYGSGIN-------REDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFH 487
+GI + S ++AGI H G DVPV+A GP A F
Sbjct: 394 VAAHTGITALTDREVAKLRDAPGSISTILAERAGIAFTTDGHTGTDVPVFAHGPNAARFD 453
Query: 488 GVHEQNYVAFAVAYAAKI 505
+ VA A+A A +
Sbjct: 454 AARDNTAVADALAAALGV 471
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 395 bits (1018), Expect = e-134
Identities = 112/464 (24%), Positives = 187/464 (40%), Gaps = 91/464 (19%)
Query: 60 NVIMFVGDGMGINTITASRIYKEGEFGK----LSFEHFPHVGLMKTYCVDKQ--VPDSAS 113
+I+ VGDGMG +A R +++ + F+ VG+ TY + V DSA+
Sbjct: 2 GMIIMVGDGMGPAYTSAYRYFQDNPDTEEIEQTVFDRLL-VGMASTYPARESGYVTDSAA 60
Query: 114 TATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGFVTTTRIT 173
+ATAL G KS VD ++ + ++++ A+ G TG T ++
Sbjct: 61 SATALATGFKSYNGAIAVDI------------NKRPLTTIMQMAKARGMSTGVAVTAQVN 108
Query: 174 HATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQCMITN 233
HATP+A +H+ SRK + IA +++ + VI+GGGR
Sbjct: 109 HATPAAFLTHNESRKNY-------------EAIAADMLKS----DADVILGGGR------ 145
Query: 234 SSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTDFLLGI 293
+ + LV ++ Y+++T +LD + K +LG+
Sbjct: 146 ---------------KYFSEALVSQF------SAKGYQHITELAQLDSITQPK---VLGL 181
Query: 294 FANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARR 353
FA D +L ++T +L LL +++ GF+L+VEG LID+A H
Sbjct: 182 FAEVQLPWVIDDTD----ANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIAT 237
Query: 354 ALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDH-GLSMSGYPNRGNEIYGIAMPS 412
A+ E F AIE + + +TL++VTADH+ GLS+ +
Sbjct: 238 AMAEMQGFANAIEVVEQYIRQHP---DTLLVVTADHNTGGLSIGANGEYQWDTKLPK--- 291
Query: 413 RIDNVPFTTLTYATGSKDNYKYFRYGSGIN--------------REDPSKADFASFDYNQ 458
I P + T+A + D G + + + +
Sbjct: 292 GISASPASIATHAIAADDWQAGVNQQLGFDVNSTELQQLTNARMQGKSTLEVALKKIIDT 351
Query: 459 QAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYA 502
++ H G DV V+A GP A LF G + ++A +
Sbjct: 352 RSYTGWTTSGHTGVDVQVFAMGPAADLFKGNQDNTHIAEKMMSL 395
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 394 bits (1014), Expect = e-134
Identities = 103/456 (22%), Positives = 175/456 (38%), Gaps = 108/456 (23%)
Query: 49 LQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGKLSFEHFPHVGLMKTYCVDKQV 108
++N+ KNVI+ + DG G++ I+++ +K G ++ F ++GL+KT + V
Sbjct: 25 VKNEPQLKTPKNVILLISDGAGLSQISSTFYFKSG---TPNYTQFKNIGLIKTSSSREDV 81
Query: 109 PDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGFVT 168
DSAS ATA CG+K+ GV V S++E A TG V
Sbjct: 82 TDSASGATAFSCGIKTYNAAIGVADDST------------AVKSIVEIAALNNIKTGVVA 129
Query: 169 TTRITHATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQ 228
T+ IT ATP++ Y+H+ +R E ++IA + E ++ GGG
Sbjct: 130 TSSITDATPASFYAHALNRGLE-------------EEIAMDMTES----DLDFFAGGGLN 172
Query: 229 CMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTD 288
F+ KR+D KD++ ++ +T L + ++
Sbjct: 173 ------YFT----------KRKDKKDVLAILK--------GNQFTINTTALTDFSSIASN 208
Query: 289 FLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHR 348
+G ++ + L T A+Q L K + F ++ EG ID+ H
Sbjct: 209 RKMGFLLADEAMPTMEKGR----GNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHA 264
Query: 349 GKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGI 408
A + E FD AI +A ++ G TLV+VT+DH+ G
Sbjct: 265 NNASYLISEINDFDDAIGTALAFAKKDG---NTLVIVTSDHETG---------------- 305
Query: 409 AMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILNNEVA 468
G + + + D + + + G +
Sbjct: 306 -----------------------------GFTLAAKKNKREDGSEYSDYTEIGPTFSTGG 336
Query: 469 HGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAK 504
H +PV+A GP + F G++E N + + K
Sbjct: 337 HSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTK 372
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 394 bits (1013), Expect = e-132
Identities = 115/504 (22%), Positives = 183/504 (36%), Gaps = 69/504 (13%)
Query: 56 GQAKNVIMFVGDGMGINTITASRIYKEGEFGK---------LSFEHFPHVGLMKTYCVDK 106
+ KNVI+ +GDGMG + Y +G T+ D
Sbjct: 1 AEIKNVILMIGDGMGPQQVGLLETYANQAPNSIYKGNKTAIYQLAQEGVIGSSLTHPEDA 60
Query: 107 QVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIEWAQRAGKHTGF 166
V DSA +AT L G+ S+ G+D++ V++V+E A++AGK TG
Sbjct: 61 IVVDSACSATMLATGIYSSSEVIGIDSQGN------------HVETVLEKAKKAGKATGL 108
Query: 167 VTTTRITHATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGG 226
V+ TR+THATP++ +H R E IA ++ V++ GG
Sbjct: 109 VSDTRLTHATPASFAAHQPHRSLENQ-------------IASDML----ATGADVMLSGG 151
Query: 227 RQCMITNSSFSP----------RDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHT 276
+ I S+ + KR+D ++L+ E D Y+ +
Sbjct: 152 LRHWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEAEKDG------YQLAFNR 205
Query: 277 EELDMLNVDKTDFLLGIFANGHTK----MEHDRDKSPTGTPSLEQMTSTALQLLMKSKAG 332
LD DK LLG+FA + + PSL++MT AL +L K + G
Sbjct: 206 NMLDDAKGDK---LLGLFAYSGMDDGIAYSNKKKSGERTQPSLKEMTQKALNILSKDEDG 262
Query: 333 FLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHG 392
F L+VEGG ID+A H A L E L FD AI+ ++R ++T+V+VTADH+ G
Sbjct: 263 FFLMVEGGQIDWAGHSNDAGTMLHELLKFDEAIQTVYEWAKDR---EDTIVIVTADHETG 319
Query: 393 LSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGINREDPSKADFA 452
G+ N++ P + F YA G ++
Sbjct: 320 --SFGFSYSSNDLPK---PQKRSGEAFADRDYAPNFNFGAFDILDGLYNQKQSYYGMISE 374
Query: 453 SFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAKIGPYSNAC 512
++ + T A Y Y + +
Sbjct: 375 FQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPAIND 434
Query: 513 IKSSSLLFILSVAISLLVFQKRFV 536
+ ++ + +
Sbjct: 435 FDAFFPYNDRGNLLAREQATGQNI 458
Score = 39.9 bits (93), Expect = 0.002
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 457 NQQAGILNNEVAHGGGDVPVYATGPMAHLF--HGVHEQNYVAFAVA 500
I+ H V V+A GP + + + + +
Sbjct: 453 ATGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIK 498
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 47/254 (18%), Positives = 79/254 (31%), Gaps = 90/254 (35%)
Query: 180 LYSHSASRK--WE-CDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQCMITN--S 234
LY S + + W D+ DI V + P N+ + GG + I S
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDI----VINNP-VNLTIHFGGEKGKRIRENYS 1689
Query: 235 SFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTDFLLGIF 294
+ D + + + +E +++ Y+++ + L L+ T F
Sbjct: 1690 AMIFETIVDG----KLKTEKIFKE--INEHSTSYTFR---SEKGL--LS--ATQF----- 1731
Query: 295 ANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLID----------- 343
T AL LM KA F + GLI
Sbjct: 1732 ------------------------TQPAL-TLM-EKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 344 -YAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRG 402
YA A +L + +S + +E ++ RG+ + V D G
Sbjct: 1766 EYA-----ALASLADVMSIESLVE----VVFYRGMTMQVAV----PRDEL---------G 1803
Query: 403 NEIYGIAM--PSRI 414
YG+ P R+
Sbjct: 1804 RSNYGMIAINPGRV 1817
Score = 42.0 bits (98), Expect = 6e-04
Identities = 87/550 (15%), Positives = 152/550 (27%), Gaps = 208/550 (37%)
Query: 14 FLMYLNSVTSRLA-DSEILEDKDFWYSNAR------SEVEKSLQNKWNTGQAKNVIMFVG 66
F L T A D E + + S VE S GQ V+
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELV---GKFLGYVSSLVEPS-----KVGQFDQVLNLCL 88
Query: 67 D--------GMGINTITAS-RIYKEGEFGKLSFEHFPHVGLMKTY---CVDKQVPDSAST 114
G I+ + A + K L+K Y + + P +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKE-------LIKNYITARIMAKRPFDKKS 141
Query: 115 ATALFCGVKSNMHTAGVDARV--------KTEDC--E-ASL--SSESKVDSVIEWAQRAG 161
+ALF V +A++ T+D E L + V +I+ +
Sbjct: 142 NSALFRAVGEG------NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK---FSA 192
Query: 162 KHTGFVTTTRITHATPSALYSHSAS-RKW--ECDDR------------LPALAMNQCKD- 205
+ R T +++ + +W + P + + Q
Sbjct: 193 ET--LSELIRTTLDAEK-VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 206 -IARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLV-------- 256
+ +L+ PG +R + G + LV
Sbjct: 250 VVTAKLLGFTPG-ELRSYLKGATGH----------------------SQGLVTAVAIAET 286
Query: 257 QEWALDKTRRGYSYKYVTHTEELDMLNVDKTDFLLGIFANGH---------TKMEHDRDK 307
W S+ +V+ + + +L F +G + + D +
Sbjct: 287 DSWE--------SF-FVSVRKAITVL------FFIG--VRCYEAYPNTSLPPSILEDSLE 329
Query: 308 SPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIER 367
+ G PS M L + + + + + +
Sbjct: 330 NNEGVPSP-----------M-------LSI----------SNLTQEQVQD------YVNK 355
Query: 368 TMALLEERGLLDETLVLV-TADHDHGLSMSGYPNRGNEIYG-------IAMPSRID--NV 417
T + L + + LV A + L +SG P +YG PS +D +
Sbjct: 356 TNSHLPAGKQV--EISLVNGAKN---LVVSGPPQ---SLYGLNLTLRKAKAPSGLDQSRI 407
Query: 418 PFTTLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAG------ILNNEVAHGG 471
PF S+ R NR P + F S A ++ N V+
Sbjct: 408 PF--------SE------RKLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNA 452
Query: 472 GD--VPVYAT 479
D +PVY T
Sbjct: 453 KDIQIPVYDT 462
Score = 37.7 bits (87), Expect = 0.010
Identities = 72/470 (15%), Positives = 135/470 (28%), Gaps = 192/470 (40%)
Query: 168 TTTR---ITHAT-------PSALYSHSASRKWEC-DDRLPALAMNQCKDIARQLVEDEPG 216
+TR ++H + P+A + AS+ E + LP D DEP
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAAD-------DEP- 54
Query: 217 KNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEW------ALDKTRRGYSY 270
++ E LV ++ ++ ++ G +
Sbjct: 55 -----------------TT----PAE------------LVGKFLGYVSSLVEPSKVG-QF 80
Query: 271 KYVTHTEELDMLNVDKTDFLLG--IFANGHT---KMEHDRDKSP---------------- 309
V + L + +L G I H K+ + D +
Sbjct: 81 DQVLNL----CLTEFENCYLEGNDI----HALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 310 TGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDE---------TLS 360
P ++ S + + + A + + GG +G +E L
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIF-GG-------QGNTDDYFEELRDLYQTYHVLV 184
Query: 361 FDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSG---YPN-RGNEIYGIAMP-SRID 415
DL I+ + L E L T + GL++ P+ ++ Y +++P S
Sbjct: 185 GDL-IKFSAETLSE---LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS--- 237
Query: 416 NVPFTTLTYATGSKDNYKYFRYGSGINRED--------------------PSKAD-FASF 454
P + +Y G + ++ D + SF
Sbjct: 238 -CPLIGVIQLA----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 455 DYN---------------QQA--------GILNNEVAHGGGDVPVYATGPMAHLFHGVHE 491
+ +A IL + + + G VP PM + + +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VP----SPMLSI-SNLTQ 346
Query: 492 ---QNYVAFAVAYAAKIGPYSNACIKSSSLLFILSVAISLLVFQKRFVFS 538
Q+YV +N+ + + V ISL+ K V S
Sbjct: 347 EQVQDYVN-----------KTNSHLPAGK-----QVEISLVNGAKNLVVS 380
Score = 37.7 bits (87), Expect = 0.011
Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 85/204 (41%)
Query: 369 MALLEE----RGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLT- 423
M L + + + + AD +H + YG ++ + N P LT
Sbjct: 1633 MDLYKTSKAAQDVWNR------AD-NHFK----------DTYGFSILDIVINNP-VNLTI 1674
Query: 424 YATGSK-----DNYKYFRYGSGINREDPSKADFASFDY------------------NQQA 460
+ G K +NY + + ++ + ++ F + Q
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 461 GILNNEVA-------HGGGDVPVYATGPMAH-LFHGVHEQNYVAFAVAYAAKIGPYSNAC 512
+ E A G G H L G E Y A A + A
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAG---HSL--G--E--YAALA-SLA---D------ 1775
Query: 513 IKSSSLLFILSV--AISLLVFQKR 534
++S+ + +VF R
Sbjct: 1776 --------VMSIESLVE-VVFY-R 1789
Score = 37.7 bits (87), Expect = 0.012
Identities = 60/274 (21%), Positives = 84/274 (30%), Gaps = 108/274 (39%)
Query: 16 MYLNSVTSRLADSEILEDKDFWYSNAR----SEVEKSLQNKWNTGQAKNVIMFVGDG--- 68
M L S+ S L ++ + + +N+ +VE SL N G AKN V G
Sbjct: 338 M-L-SI-SNLTQEQVQDYVN--KTNSHLPAGKQVEISLVN----G-AKN---LVVSGPPQ 384
Query: 69 --MGINT----ITA------SRIYKEGEFG--KLSFEH-F-----P-HVGLMKTYCVDKQ 107
G+N A SRI F KL F + F P H L+ D
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRI----PFSERKLKFSNRFLPVASPFHSHLLVP-ASDLI 439
Query: 108 VPDSAS-----TATALFCGVKSNMHTA-GVDARVKTEDCEASLSSESKVDSVIE----WA 157
D A + V T G D RV + + VD +I W
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVY---DTFDGSDLRVLSGSISERI-----VDCIIRLPVKWE 491
Query: 158 QRAGKHTGFVTTTRITHAT---PSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDE 214
T + TH P L L ++ KD
Sbjct: 492 T--------TTQFKATHILDFGPGGA------------SGLGVL-THRNKD--------- 521
Query: 215 PGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCK 248
G +RVI+ G + P+D++ K
Sbjct: 522 -GTGVRVIVAG---------TLDIN-PDDDYGFK 544
Score = 32.3 bits (73), Expect = 0.44
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 33/90 (36%)
Query: 19 NSVTSRLADSEILEDKDFWYSNARSEVEKSLQNKWNTGQAKNVIMF-------VG----- 66
S++ R+ D I+ W E + Q K A +++ F +G
Sbjct: 473 GSISERIVD-CIIRLPVKW--------ETTTQFK-----ATHILDFGPGGASGLGVLTHR 518
Query: 67 --DGMGINTITASRIYK--EGEFGKLSFEH 92
DG G+ I A + + ++G F+
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYG---FKQ 545
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNE-----IYGIAMPSRIDN 416
D A+ ++ D+T+ +V ADHD + + + I G + R D+
Sbjct: 279 DYALGTFFDKAKKSSYWDDTIFIVIADHDARVFGANLVPVKHFHIPALIIGKDIQPRKDD 338
Query: 417 VP------FTTLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILNNE 466
TL G + K G + + + + A Y++ G L +
Sbjct: 339 RIANNIDMPPTLLSLIGV--DAKTPMIGRDLTKPLAREDERAMMQYDKNFGYLTRD 392
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 42.4 bits (99), Expect = 3e-04
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 322 ALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSF-DLAIERTMALLEERGLLDE 380
L + + + + + H G R + + D AI R +A ++ G
Sbjct: 151 WLATDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRAR 210
Query: 381 TLVLVTADHDH 391
T ++V +DH
Sbjct: 211 TNIIVVSDHGM 221
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 41.3 bits (97), Expect = 7e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADH-----DHGL 393
D + R + L+E G D+TL++ T+DH DH L
Sbjct: 327 DDCLGRVFSYLDETGQWDDTLIIFTSDHGEQLGDHHL 363
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 40.0 bits (94), Expect = 0.002
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADH-----DHGL 393
++ + L T+V++ ADH H +
Sbjct: 258 SKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRM 294
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 37.7 bits (88), Expect = 0.008
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRG 402
D + R + L++ L D T+V+ T+ DHG+ G
Sbjct: 287 DENVGRIIEALKQNNLFDNTIVVFTS--DHGI-CMGAHENA 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.010
Identities = 57/414 (13%), Positives = 113/414 (27%), Gaps = 111/414 (26%)
Query: 188 KWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQCMITNSSF-----SPRDPE 242
+++ D L + + V+D P K+I ++ S D
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMP-KSI-----------LSKEEIDHIIMSK-DAV 61
Query: 243 DE-----WSCKRRDGKDLVQEWALDKTRRGYSYKYVT-HTEELDMLNVDKTDFLLGIFAN 296
W +++VQ++ + R Y + TE+ + ++
Sbjct: 62 SGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRMYIE 114
Query: 297 GHTKMEHDRDK-SPTGTPSLEQMTS--TALQLLMKSKAGFLLVVEG--GLIDYAHHRGK- 350
++ +D + L+ AL L +K ++++G G GK
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGS-------GKT 164
Query: 351 -----ARRALDETLSFDLAI--------ERTMALLEERGLLDETLVLVTADHDHGLSMSG 397
+ D I +LE L + S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSN 222
Query: 398 YPNRGNEIYG---IAMPSR--------IDNV-------PF-----TTLTYATGSKDNYKY 434
R + I + S+ + NV F LT T K
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQV--- 277
Query: 435 FRYGSGINREDPSKADFA-SFDYNQQAGILNNEVAHGGGDVPVYA--TGPMAH-LFHGVH 490
+ S S + + ++ +L + D+P T P +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333
Query: 491 EQNYVAFAVAYAAKIGPYSNACIKSSSLLFILSVAISLL---VFQKRF----VF 537
A + + + L I+ ++++L ++K F VF
Sbjct: 334 ----AESIRDGLATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Score = 37.1 bits (85), Expect = 0.016
Identities = 49/390 (12%), Positives = 118/390 (30%), Gaps = 136/390 (34%)
Query: 3 SCRMIVCFKFVFLMYLNSVTSRLADSEILEDKDFWYSNARSEVE-------------KSL 49
SC++++ T+R ++ DF + + + KSL
Sbjct: 265 SCKILL-------------TTR--FKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 50 QNKW-NTG------QAKNVIMFVGDGMGINTITASRIYKEGEFGKLSFEHFPHVGLMKT- 101
K+ + + ++ I S ++G +++++ HV K
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRR-----LSIIAES--IRDG---LATWDNWKHVNCDKLT 356
Query: 102 ----YCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKV-DSVIE- 155
++ P + R + + + + ++
Sbjct: 357 TIIESSLNVLEPA---------------------EYRKMFDRL-SVFPPSAHIPTILLSL 394
Query: 156 -WAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDR--LPALAMNQCKDIARQLVE 212
W V L+ +S K + +P++ + ++ +L E
Sbjct: 395 IWFDVIKSDVMVVVNK---------LHKYSLVEKQPKESTISIPSIYL----ELKVKL-E 440
Query: 213 DEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKY 272
+E + ++ ++ K D DL+ + LD Y Y +
Sbjct: 441 NEYALHRSIV-----------DHYNIP--------KTFDSDDLIPPY-LD----QYFYSH 476
Query: 273 VT-HTEELDMLNVDKTDFLLGIFANGH---TKMEHD---RDKSPTGTPSLEQM------- 318
+ H + ++ ++ +F + K+ HD + S + +L+Q+
Sbjct: 477 IGHHLKNIEH--PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 319 --TSTALQLLMKSKAGFLLVVEGGLIDYAH 346
+ L+ + FL +E LI +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKY 564
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 36.6 bits (84), Expect = 0.020
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 316 EQMTSTALQLLMKSKA-GFLLVVEGGLIDYAHH-----RGKARRAL--DETLSFDLAIER 367
+++T A Q + ++ FLLV+ + A GK++ + D D ++ +
Sbjct: 241 QRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQ 300
Query: 368 TMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSR 413
+ LL+E L ++TL+ T+ D G + ++G G +
Sbjct: 301 ILNLLDELRLANDTLIYFTS--DQGAHVEEVSSKGEIHGGSNGIYK 344
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.040
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 185 ASRKWECDDRLPALAMN 201
AS K DD PALA+
Sbjct: 27 ASLKLYADDSAPALAIK 43
Score = 33.0 bits (74), Expect = 0.100
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 18/46 (39%)
Query: 81 KEGEFGKLSFEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNM 126
K+ KL +K Y DSA AL +K+ M
Sbjct: 19 KQ-ALKKLQ-------ASLKLY-----ADDSAP---AL--AIKATM 46
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 34.3 bits (79), Expect = 0.098
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 344 YAHHRGKARRAL-DETLSFDLAIERTMALLEERGLLDETLVLVTADH 389
Y + K R D A+ A L+ GL + T+ + + D+
Sbjct: 214 YDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDN 260
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 34.2 bits (77), Expect = 0.11
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 342 IDYAHHR-GKARRALDETLS-FDLAIERTMALLEERGLLDETLVLVTADHDH 391
D++ H+ G + L D + + M L++ L V+ DH
Sbjct: 275 PDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGM 326
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 32.7 bits (75), Expect = 0.35
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 347 HRGKARRAL--DETLSFDLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGYPNRGN 403
++ R D + D A+ M + + GLL+ETLV+ TA D+G G
Sbjct: 220 FAERSGRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTA--DNGPETMRMSRGGC 276
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 32.0 bits (72), Expect = 0.46
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 14/130 (10%)
Query: 264 TRRGYSYKYVTHTEELDMLN---VDKTDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTS 320
R + E + + V + +L G+ + + T +
Sbjct: 223 VRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPGATGTVGSNYRGKIE 282
Query: 321 TALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEE-RGLLD 379
A+ L + + D A H G D IE +E + + D
Sbjct: 283 KAVDLTSSHDFVLVNIKAT---DVAGHDGNYPLKRD-------VIEDIDRAMEPLKSIGD 332
Query: 380 ETLVLVTADH 389
++ VT DH
Sbjct: 333 HAVICVTGDH 342
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 31.8 bits (72), Expect = 0.53
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHGLSMSGY---PNRGNEIYGIAMPSRIDNVP 418
D +IE+ L++ GL D++++++ DH G + +++ VP
Sbjct: 232 DQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVP 291
Query: 419 F 419
Sbjct: 292 L 292
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 31.7 bits (72), Expect = 0.58
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 344 YAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADH-DHGLSMSGYPNRG 402
A ++ D I R + L +G LD T VL +D+ G + +P G
Sbjct: 276 SARAMEVYAAMVERM---DWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFG 332
Query: 403 NEIYG 407
++ G
Sbjct: 333 PDLLG 337
>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R
phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate,
PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus
cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A
3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A
Length = 399
Score = 31.8 bits (72), Expect = 0.60
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 312 TPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMAL 371
T S + L G + HR + + +D + A
Sbjct: 261 TKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAK 320
Query: 372 LEERGLLDETLVLVTADH 389
L+E L+L+TADH
Sbjct: 321 LKEDD-----LLLITADH 333
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 31.4 bits (71), Expect = 0.79
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTADHDHG 392
D A+E + L+++GL D +++++ DH
Sbjct: 232 DEALEEYINDLKKKGLYDNSVIMIYGDHYGI 262
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 30.8 bits (70), Expect = 1.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 362 DLAIERTMALLEERGLLDETLVLVTAD 388
D + + + ++ G D T+V+ T+D
Sbjct: 278 DAQVGKVLDKIKAMGEEDNTIVIFTSD 304
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 30.0 bits (67), Expect = 2.1
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 299 TKMEHDRDKSPTGTPSLEQMTST-ALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDE 357
+ + TG + +M L+K L + D A H K + +
Sbjct: 262 VGFDVYTPEGATGEYNTNEMAKAKKAVELLKDYDFVFLHFKP--TDAAGHDNKPKLKAEL 319
Query: 358 TLSFDLAIERTMALLEERGLLDETLVLVTADH 389
D I + ++ +E ++ +T DH
Sbjct: 320 IERADRMIGYILDHVDL----EEVVIAITGDH 347
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, hot-DOG superfamily;
1.25A {Thermanaerovibrio acidaminovorans}
Length = 138
Score = 28.2 bits (63), Expect = 4.0
Identities = 1/20 (5%), Positives = 2/20 (10%)
Query: 467 VAHGGGDVPVYATGPMAHLF 486
+T
Sbjct: 29 TNRSKALEEFMSTAAFLETM 48
>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC,
PSI, protein structure initiative; 2.00A {Streptococcus
mutans} SCOP: c.76.1.5 d.327.1.1 PDB: 3m7v_A
Length = 403
Score = 28.8 bits (64), Expect = 4.4
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 347 HRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADH 389
HR A D FD + +A ++ L+L+TADH
Sbjct: 303 HRRNAHGYRDCLHEFDERLPEIIAAMKVDD-----LLLITADH 340
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 28.8 bits (65), Expect = 5.7
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 332 GFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVLVTADHDH 391
GF+L + GG D + + ++ + L L + +
Sbjct: 305 GFVLSLSGG-AD---------SSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPA- 353
Query: 392 GLSMSGYPNRGNEIYGIAMPSR 413
L + + +I + + +
Sbjct: 354 -LQHLPFEEQAKKITAVFLTTA 374
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 28.2 bits (64), Expect = 6.4
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 350 KARR-ALDETLSFDLAIERTMALLEERGLLDETLVLV---TADH 389
+ R A D DLA+ A L GL V++ T D
Sbjct: 43 RQRHIAGDLGSG-DLALRAASAALASAGLERVDAVVLATSTGDF 85
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 27.3 bits (61), Expect = 7.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 201 NQCKDIARQLVEDEPGKNIRVIMGGG 226
+ +A +L+ E K I + GG
Sbjct: 14 IHARKLASRLMPSEQWKGIIAVSRGG 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.5 bits (64), Expect = 7.2
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 271 KYVTHTEELDMLNVDKTDFLLGIFANGHTKMEHDRDKSPTG-----------TPSLEQMT 319
Y + ++ + K +LLG A + DR+ G T +L
Sbjct: 556 NYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEI 615
Query: 320 STALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRAL----DETLSFDLAIE 366
A++ ++ + G + + + + + AL D+ F+LA++
Sbjct: 616 EEAIENVLPNVEGKDSLTK--IARFLEGQEYYEEALNISPDQDQKFELALK 664
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 27.8 bits (61), Expect = 8.8
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 22/94 (23%)
Query: 421 TLTYATGSKDNYKYFRYGSGINREDPSKADFASFDYNQQAGILN--------------NE 466
L G + Y +A +F YNQ +N E
Sbjct: 236 ELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKE 295
Query: 467 VAHGGGDVPVYATGPM---AHLF--HGVHEQNYV 495
++ PVY G H F G +N+
Sbjct: 296 LSQNQ---PVYYQGVGKVGGHAFVIDGADGRNFY 326
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 28.0 bits (63), Expect = 9.4
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 20 SVTSRLADSEILEDKDFWYSNARSEVE 46
+V SR D L D +WY N R V
Sbjct: 759 TVESRSMDGTEL-DARYWYRNLRETVR 784
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.396
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,223,181
Number of extensions: 504810
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 47
Length of query: 538
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 440
Effective length of database: 3,965,535
Effective search space: 1744835400
Effective search space used: 1744835400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)