RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11731
(538 letters)
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 448 bits (1154), Expect = e-154
Identities = 192/488 (39%), Positives = 277/488 (56%), Gaps = 21/488 (4%)
Query: 32 EDKDFWYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGK---- 87
EDK +W +A+ ++K L K QAKNVI F+GDGM ++T+TA+RIYK G GK
Sbjct: 2 EDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFERE 61
Query: 88 -LSFEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSS 146
+S+E F L KTY DKQV DSA++ATA GVK+N G+DA +C L
Sbjct: 62 KISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDE 121
Query: 147 ESKVDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAMNQ--CK 204
S+ W Q AG+ TG VT+TR+THATP+ Y+H A R WE D + + C
Sbjct: 122 SLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICD 181
Query: 205 DIARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKT 264
DIA QLV EPGKN +VIMGGGR+ + D ED +R DGK L+ +W DK
Sbjct: 182 DIAEQLVFREPGKNFKVIMGGGRRGFFPEEA---LDIEDGIPGEREDGKHLITDWLDDKA 238
Query: 265 RRGYSYKYVTHTEELDMLNVDKTDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTALQ 324
+G + YV + ++L +++ TD+L+G+F+ H RD P+L +MT A++
Sbjct: 239 SQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRD--AEMDPTLPEMTKVAIE 296
Query: 325 LLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETLVL 384
+L K + GF L+VEGG ID+ HH + R++L ETL + A+ +++ + ET++L
Sbjct: 297 MLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPE----ETIIL 352
Query: 385 VTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGINRE 444
VTADH H L+++GY +R +I A S +D+ +T L Y +G Y G R
Sbjct: 353 VTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSG--PGYHITEDGK---RY 407
Query: 445 DPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYAAK 504
+P++ D ++ + + H G DV ++ GP AHLF GV+E+NY+ A+AYAA
Sbjct: 408 EPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAAC 467
Query: 505 IGPYSNAC 512
+G C
Sbjct: 468 VGTGRTFC 475
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 432 bits (1112), Expect = e-148
Identities = 201/488 (41%), Positives = 275/488 (56%), Gaps = 30/488 (6%)
Query: 32 EDKDFWYSNARSEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYK------EGEF 85
E+ DFW A + + + + AKN+I+F+GDGMG++T+TA+RI K G
Sbjct: 7 ENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPE 66
Query: 86 GKLSFEHFPHVGLMKTYCVDKQVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLS 145
L+ + FP+V L KTY VDK VPDS +TATA CGVK N T G+ A + C +
Sbjct: 67 IPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRG 126
Query: 146 SESKVDSVIEWAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALA-MNQCK 204
+E V SV+ A++AGK G VTTTR+ HA+P+ Y+H+ +R W D +PA A C+
Sbjct: 127 NE--VISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQ 184
Query: 205 DIARQLVEDEPGKNIRVIMGGGRQCMITNSSFSPRDPEDE-WSCKRRDGKDLVQEWALDK 263
DIA QL+ + +I VI+GGGR+ M + P P+D R DGK+LVQEW
Sbjct: 185 DIATQLISN---MDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEW---- 237
Query: 264 TRRGYSYKYVTHTEELDMLNVD-KTDFLLGIFANGHTKMEHDRDKSPTGTPSLEQMTSTA 322
+ +YV + EL ++D L+G+F G K E RD T PSL +MT A
Sbjct: 238 LAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRD--STLDPSLMEMTEAA 295
Query: 323 LQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLEERGLLDETL 382
L+LL ++ GF L VEGG ID+ HH +A RAL ET+ FD AIER L E ++TL
Sbjct: 296 LRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSE----EDTL 351
Query: 383 VLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYKYFRYGSGIN 442
LVTADH H S GYP RG+ I+G+A D +T L Y G
Sbjct: 352 SLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPG------YVLKDGA 405
Query: 443 REDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQNYVAFAVAYA 502
R D ++++ S +Y QQ+ + +E H G DV V+A GP AHL HGV EQ ++A +A+A
Sbjct: 406 RPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFA 465
Query: 503 AKIGPYSN 510
A + PY+
Sbjct: 466 ACLEPYTA 473
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 329 bits (843), Expect = e-108
Identities = 119/492 (24%), Positives = 189/492 (38%), Gaps = 99/492 (20%)
Query: 43 SEVEKSLQNKWNTGQAKNVIMFVGDGMGINTITASRIYKEGEFGKL-SFEHFPHVGLMKT 101
+ +L++ + AKN+I+ +GDGMG + ITA+R Y EG G + P G
Sbjct: 27 GDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTH 86
Query: 102 YCVDK------QVPDSASTATALFCGVKSNMHTAGVDARVKTEDCEASLSSESKVDSVIE 155
Y ++K V DSA++ATA GVK+ GVD E +++E
Sbjct: 87 YALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDI------------HEKDHPTILE 134
Query: 156 WAQRAGKHTGFVTTTRITHATPSALYSHSASRKWECDDRLPALAMNQCKD--IARQLVED 213
A+ AG TG V+T + ATP+AL +H SRK + + E
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQ 194
Query: 214 EPGKNIRVIMGGGRQCMITNSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYV 273
V +GGG +F+ EW GK L ++ + Y+ V
Sbjct: 195 LLNARADVTLGGGA------KTFAETATAGEW-----QGKTLREQA------QARGYQLV 237
Query: 274 THTEELDML-NVDKTDFLLGIFANGHTKMEHDRDKS-------------------PTGTP 313
+ L+ + ++ LLG+FA+G+ + K+ P
Sbjct: 238 SDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVP 297
Query: 314 SLEQMTSTALQLLMKSKAGFLLVVEGGLIDYAHHRGKARRALDETLSFDLAIERTMALLE 373
+L QMT A++LL K++ GF L VEG ID H + ET+ D A++R + +
Sbjct: 298 TLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAK 357
Query: 374 ERGLLDETLVLVTADHDHGLSMSGYPNRGNEIYGIAMPSRIDNVPFTTLTYATGSKDNYK 433
+ G TLV+VTADH H + + G+ + ++Y
Sbjct: 358 KEG---NTLVIVTADHAHASQIVAPDTKAP---GLTQALNTKDGAVMVMSYGNSE----- 406
Query: 434 YFRYGSGINREDPSKADFASFDYNQQAGILNNEVAHGGGDVPVYATGPMAHLFHGVHEQN 493
S H G + + A GP A G+ +Q
Sbjct: 407 ---EDSQ---------------------------EHTGSQLRIAAYGPHAANVVGLTDQT 436
Query: 494 YVAFAVAYAAKI 505
+ + + A +
Sbjct: 437 DLFYTMKAALGL 448
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 28.0 bits (61), Expect = 3.2
Identities = 30/207 (14%), Positives = 51/207 (24%), Gaps = 8/207 (3%)
Query: 173 THATPSALYSHSASRKWECDDRLPALAMNQCKDIARQLVEDEPGKNIRVIMGGGRQCMIT 232
Y S D L K++ + ++ R
Sbjct: 120 YRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR-RLKVKLSSVGDPEDRARYNAYL 178
Query: 233 NSSFSPRDPEDEWSCKRRDGKDLVQEWALDKTRRGYSYKYVTHTEELDMLNVDKTDFLLG 292
SP K R ++ ++ R K + LD L + L
Sbjct: 179 REVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKE 238
Query: 293 IFANGHTKMEHDRDKSPTGTPSLEQMTSTALQLLMKSKAGFLLVVEGGLIDY--AHHRGK 350
+ + + P L+ TA ++ + + GG D G
Sbjct: 239 VERHLERLSV-PYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGP 297
Query: 351 ARRALDETLSFDLAIERTMALLEERGL 377
+ F +ER LE G
Sbjct: 298 RVPGV----GFAFGVERVALALEAEGF 320
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.396
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,959,372
Number of extensions: 90948
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 7
Length of query: 538
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 448
Effective length of database: 1,171,896
Effective search space: 525009408
Effective search space used: 525009408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)