BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11733
(971 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/425 (62%), Positives = 322/425 (75%), Gaps = 40/425 (9%)
Query: 62 VKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFY 121
+K+++ +V +T+NV++Y +HRKL+E+ ++
Sbjct: 75 LKMALSFVQRTFNVDVYEDIHRKLAEASREVQNA-------------------------- 108
Query: 122 LNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIR 181
PD G+M P P LD +E KKA +KLEKLD DLKNYK NSIKESIR
Sbjct: 109 -------PDAVPEGSMEP---PALDTSWVEATRKKALLKLEKLDTDLKNYKGNSIKESIR 158
Query: 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYV 241
RGHDDLGDHYLDCGDLSNALKCYSRARDYCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV
Sbjct: 159 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYV 218
Query: 242 NKAEATPDFAEGK----DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPE 297
+KAE+TP+ AE + QAV TKLK AAGLAELA RKYK AA+ FL A FD+CDFPE
Sbjct: 219 SKAESTPEIAEQRGERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPE 278
Query: 298 LLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCL 357
LLSP+N+A YGGLCALATFDR EL++ VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL
Sbjct: 279 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCL 338
Query: 358 NLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALEN 417
+L +I DNLLLDMY+APHV TLYTQIRNRALIQYFSPY+SAD+ KM+ AFNTT+ ALE+
Sbjct: 339 KMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALED 398
Query: 418 ELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKH 477
EL LIL+G I ARIDSH+KILYA+ DQRSTTFEKSL +G+E+ R++ +ILR+A++++
Sbjct: 399 ELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRAAVLRN 458
Query: 478 NICVK 482
I VK
Sbjct: 459 QIHVK 463
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/223 (56%), Positives = 154/223 (69%), Gaps = 36/223 (16%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DLE YA+SY+GL R+ RL ++AD CP LR EAL+MA+ +V +T+NV++Y +HRKL+E+
Sbjct: 43 DLEQYASSYSGLMRIERLQFIADRCPQLRVEALKMALSFVQRTFNVDVYEDIHRKLAEAS 102
Query: 660 SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLL 719
++ PD G+M P P LD
Sbjct: 103 REVQNA---------------------------------PDAVPEGSMEP---PALDTSW 126
Query: 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 779
+E KKA +KLEKLD DLKNYK NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD
Sbjct: 127 VEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 186
Query: 780 YCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
YCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV+KAE+TP+ AE
Sbjct: 187 YCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAE 229
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 92/169 (54%), Gaps = 52/169 (30%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIM-------------------- 862
VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL +L +I
Sbjct: 306 VISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQI 365
Query: 863 -----------------------------ALENELMTLILDGQIQARIDSHNKILYAKQQ 893
ALE+EL LIL+G I ARIDSH+KILYA+
Sbjct: 366 RNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDV 425
Query: 894 DQRSTTFEKSLNVGKEYARKSNMLILRSAM---QVDVHMEDNDNNEQEM 939
DQRSTTFEKSL +G+E+ R++ +ILR+A+ Q+ V + ++ E+
Sbjct: 426 DQRSTTFEKSLQMGREFQRRAKAMILRAAVLRNQIHVKSPPREGSQGEL 474
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 55/73 (75%)
Query: 531 QTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 590
QT K AAGLAELA RKYK AA+ FL A FD+CDFPELLSP+N+A YGGLCALAT
Sbjct: 237 QTQAVLTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSPSNVAVYGGLCALAT 296
Query: 591 FDRSELEKQDLES 603
FDR EL++ + S
Sbjct: 297 FDRQELQRNVISS 309
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 6/97 (6%)
Query: 440 YAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNIC------VKDNLLLDMYIAP 493
+ +Q+ QR+ S + E + +I + K+ C +KDNLLLDMY+AP
Sbjct: 297 FDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAP 356
Query: 494 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
HV TLYTQIRNRALIQYFSPY+SAD+ KM+ AFNTT+
Sbjct: 357 HVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTV 393
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 51/61 (83%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICV 62
LIL+G I ARIDSH+KILYA+ DQRSTTFEKSL +G+E+ R++ +ILR+A++++ I V
Sbjct: 403 LILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRAAVLRNQIHV 462
Query: 63 K 63
K
Sbjct: 463 K 463
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 244/344 (70%), Positives = 301/344 (87%), Gaps = 1/344 (0%)
Query: 140 QDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSN 199
+D D ++TK KKAA+KLEKLD+DLKNYKSNSIKESIRRGHDDL DHYL CGDL+N
Sbjct: 153 KDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTN 212
Query: 200 ALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG-KDNNQ 258
ALKCYSRARDYCT+GKHVV+MCLNVI+VS+YLQNW+HV+SY++KAE+TPDFAEG K+ N
Sbjct: 213 ALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANA 272
Query: 259 AVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDR 318
V T+L+ AAGLAEL +KYK AA+ FL A+FD+CDFPE++S +N+A YGGLCALATFDR
Sbjct: 273 QVHTRLECAAGLAELQQKKYKVAAKHFLNANFDHCDFPEMISTSNVAVYGGLCALATFDR 332
Query: 319 SELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVN 378
EL++ VI S+ FKLFLELEPQLRDI+ +FY SKYA+CL LL +I DNLL+DMYIAPHV
Sbjct: 333 QELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVT 392
Query: 379 TLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKI 438
TLYT+IRNRALIQYFSPY+SAD++KM++AFN+++ LENE+M LILDGQIQARIDSHNKI
Sbjct: 393 TLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKI 452
Query: 439 LYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVK 482
L+AK+ DQR++TFE++L +GK+Y R + ML+LR+AM+K +I VK
Sbjct: 453 LFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVK 496
Score = 199 bits (507), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 103/113 (91%)
Query: 710 QDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSN 769
+D D ++TK KKAA+KLEKLD+DLKNYKSNSIKESIRRGHDDL DHYL CGDL+N
Sbjct: 153 KDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTN 212
Query: 770 ALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
ALKCYSRARDYCT+GKHVV+MCLNVI+VS+YLQNW+HV+SY++KAE+TPDFAE
Sbjct: 213 ALKCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAE 265
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 69/197 (35%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQI--------------------- 861
VI S+ FKLFLELEPQLRDI+ +FY SKYA+CL LL +I
Sbjct: 339 VIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKI 398
Query: 862 ---------------------MA-------LENELMTLILDGQIQARIDSHNKILYAKQQ 893
MA LENE+M LILDGQIQARIDSHNKIL+AK+
Sbjct: 399 RNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEA 458
Query: 894 DQRSTTFEKSLNVGKEYARKSNMLILRSAM-QVDVHMEDNDNNEQEMIIVENASLSPTIS 952
DQR++TFE++L +GK+Y R + ML+LR+AM + +H++ +IS
Sbjct: 459 DQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVK-------------------SIS 499
Query: 953 RSDENGRGSEMSVATGS 969
R + G+E+ V+ GS
Sbjct: 500 REGGSNHGAELCVSAGS 516
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 3/68 (4%)
Query: 531 QTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 590
Q HTR + AAGLAEL +KYK AA+ FL A+FD+CDFPE++S +N+A YGGLCALAT
Sbjct: 273 QVHTR---LECAAGLAELQQKKYKVAAKHFLNANFDHCDFPEMISTSNVAVYGGLCALAT 329
Query: 591 FDRSELEK 598
FDR EL++
Sbjct: 330 FDRQELKR 337
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 55/63 (87%)
Query: 1 MTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNI 60
M LILDGQIQARIDSHNKIL+AK+ DQR++TFE++L +GK+Y R + ML+LR+AM+K +I
Sbjct: 434 MQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHI 493
Query: 61 CVK 63
VK
Sbjct: 494 HVK 496
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 49/50 (98%)
Query: 481 VKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
++DNLL+DMYIAPHV TLYT+IRNRALIQYFSPY+SAD++KM++AFN+++
Sbjct: 377 IRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSV 426
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 44/58 (75%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSE 657
DLE YAN Y G+ RL RLIYVAD CP L EAL+MAI YV TYNVNLY LH++LS+
Sbjct: 44 DLEVYANQYAGIVRLHRLIYVADVCPVLAVEALKMAITYVQTTYNVNLYQVLHKRLSD 101
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 62 VKISIQYVMQTYNVNLYIQLHRKLSE 87
+K++I YV TYNVNLY LH++LS+
Sbjct: 76 LKMAITYVQTTYNVNLYQVLHKRLSD 101
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/425 (62%), Positives = 327/425 (76%), Gaps = 40/425 (9%)
Query: 62 VKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFY 121
+K+++ +V +T+NV++Y ++HRKLSE+ L+
Sbjct: 59 LKMALSFVQRTFNVDMYEEIHRKLSEATRELQ---------------------------- 90
Query: 122 LNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIR 181
N+ A+P+ SG + P LD +E KKA +KLEKLD DLKNYK NSIKESIR
Sbjct: 91 -NAPDAIPE---SG----VEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIR 142
Query: 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYV 241
RGHDDLGDHYLDCGDLSNALKCYSRARDYCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV
Sbjct: 143 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYV 202
Query: 242 NKAEATPDFAEGK----DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPE 297
+KAE+TP+ AE + QA+ TKLK AAGLAELA RKYK AA+ FL A FD+CDFPE
Sbjct: 203 SKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPE 262
Query: 298 LLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCL 357
LLSP+N+A YGGLCALATFDR EL++ VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL
Sbjct: 263 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCL 322
Query: 358 NLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALEN 417
+L ++ DNLLLDMY+APHV TLYTQIRNRALIQYFSPY+SAD++KM+ AFNTT+ ALE+
Sbjct: 323 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALED 382
Query: 418 ELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKH 477
EL LIL+G I ARIDSH+KILYA+ DQRSTTFEKSL +GKE+ R++ +ILR+A++++
Sbjct: 383 ELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRN 442
Query: 478 NICVK 482
I VK
Sbjct: 443 QIHVK 447
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/223 (57%), Positives = 157/223 (70%), Gaps = 36/223 (16%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DLE YA SY+GL R+ RL ++AD CP LR EAL+MA+ +V +T+NV++Y ++HRKLSE+
Sbjct: 27 DLEQYAASYSGLMRIERLQFIADRCPPLRVEALKMALSFVQRTFNVDMYEEIHRKLSEAT 86
Query: 660 SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLL 719
L+ N+ A+P+ SG + P LD
Sbjct: 87 RELQ-----------------------------NAPDAIPE---SG----VEPPPLDTAW 110
Query: 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 779
+E KKA +KLEKLD DLKNYK NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD
Sbjct: 111 VEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 170
Query: 780 YCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
YCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV+KAE+TP+ AE
Sbjct: 171 YCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAE 213
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 92/169 (54%), Gaps = 52/169 (30%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQ---------------------- 860
VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL +L +
Sbjct: 290 VISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQI 349
Query: 861 ---------------------------IMALENELMTLILDGQIQARIDSHNKILYAKQQ 893
+ ALE+EL LIL+G I ARIDSH+KILYA+
Sbjct: 350 RNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDV 409
Query: 894 DQRSTTFEKSLNVGKEYARKSNMLILRSAM---QVDVHMEDNDNNEQEM 939
DQRSTTFEKSL +GKE+ R++ +ILR+A+ Q+ V + ++ E+
Sbjct: 410 DQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKSPPREGSQGEL 458
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 55/73 (75%)
Query: 531 QTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 590
QT K AAGLAELA RKYK AA+ FL A FD+CDFPELLSP+N+A YGGLCALAT
Sbjct: 221 QTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSPSNVAVYGGLCALAT 280
Query: 591 FDRSELEKQDLES 603
FDR EL++ + S
Sbjct: 281 FDRQELQRNVISS 293
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 440 YAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVK------DNLLLDMYIAP 493
+ +Q+ QR+ S + E + +I + K+ C+K DNLLLDMY+AP
Sbjct: 281 FDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAP 340
Query: 494 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
HV TLYTQIRNRALIQYFSPY+SAD++KM+ AFNTT+
Sbjct: 341 HVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTV 377
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 51/61 (83%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICV 62
LIL+G I ARIDSH+KILYA+ DQRSTTFEKSL +GKE+ R++ +ILR+A++++ I V
Sbjct: 387 LILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHV 446
Query: 63 K 63
K
Sbjct: 447 K 447
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/425 (62%), Positives = 327/425 (76%), Gaps = 40/425 (9%)
Query: 62 VKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFY 121
+K+++ +V +T+NV++Y ++HRKLSE+ L+
Sbjct: 59 LKMALSFVQRTFNVDMYEEIHRKLSEATRELQ---------------------------- 90
Query: 122 LNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIR 181
N+ A+P+ SG + P LD +E KKA +KLEKLD DLKNYK NSIKESIR
Sbjct: 91 -NAPDAIPE---SG----VEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIR 142
Query: 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYV 241
RGHDDLGDHYLDCGDLSNALKCYSRARDYCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV
Sbjct: 143 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYV 202
Query: 242 NKAEATPDFAEGK----DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPE 297
+KAE+TP+ AE + QA+ TKLK AAGLAELA RKYK AA+ FL A FD+CDFPE
Sbjct: 203 SKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPE 262
Query: 298 LLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCL 357
LLSP+N+A YGGLCALATFDR EL++ VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL
Sbjct: 263 LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCL 322
Query: 358 NLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALEN 417
+L ++ DNLLLDMY+APHV TLYTQIRNRALIQYFSPY+SAD++KM+ AFNTT+ ALE+
Sbjct: 323 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALED 382
Query: 418 ELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKH 477
EL +IL+G I ARIDSH+KILYA+ DQRSTTFEKSL +GKE+ R++ +ILR+A++++
Sbjct: 383 ELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRN 442
Query: 478 NICVK 482
I VK
Sbjct: 443 QIHVK 447
Score = 243 bits (620), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 129/223 (57%), Positives = 157/223 (70%), Gaps = 36/223 (16%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DLE YA SY+GL R+ RL ++AD CP LR EAL+MA+ +V +T+NV++Y ++HRKLSE+
Sbjct: 27 DLEQYAASYSGLMRIERLQFIADRCPPLRVEALKMALSFVQRTFNVDMYEEIHRKLSEAT 86
Query: 660 SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLL 719
L+ N+ A+P+ SG + P LD
Sbjct: 87 RELQ-----------------------------NAPDAIPE---SG----VEPPPLDTAW 110
Query: 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 779
+E KKA +KLEKLD DLKNYK NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD
Sbjct: 111 VEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 170
Query: 780 YCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
YCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV+KAE+TP+ AE
Sbjct: 171 YCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAE 213
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 92/169 (54%), Gaps = 52/169 (30%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQ---------------------- 860
VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL +L +
Sbjct: 290 VISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQI 349
Query: 861 ---------------------------IMALENELMTLILDGQIQARIDSHNKILYAKQQ 893
+ ALE+EL +IL+G I ARIDSH+KILYA+
Sbjct: 350 RNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDV 409
Query: 894 DQRSTTFEKSLNVGKEYARKSNMLILRSAM---QVDVHMEDNDNNEQEM 939
DQRSTTFEKSL +GKE+ R++ +ILR+A+ Q+ V + ++ E+
Sbjct: 410 DQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKSPPREGSQGEL 458
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 55/73 (75%)
Query: 531 QTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 590
QT K AAGLAELA RKYK AA+ FL A FD+CDFPELLSP+N+A YGGLCALAT
Sbjct: 221 QTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSPSNVAVYGGLCALAT 280
Query: 591 FDRSELEKQDLES 603
FDR EL++ + S
Sbjct: 281 FDRQELQRNVISS 293
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 440 YAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVK------DNLLLDMYIAP 493
+ +Q+ QR+ S + E + +I + K+ C+K DNLLLDMY+AP
Sbjct: 281 FDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAP 340
Query: 494 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
HV TLYTQIRNRALIQYFSPY+SAD++KM+ AFNTT+
Sbjct: 341 HVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTV 377
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 51/61 (83%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICV 62
+IL+G I ARIDSH+KILYA+ DQRSTTFEKSL +GKE+ R++ +ILR+A++++ I V
Sbjct: 387 VILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHV 446
Query: 63 K 63
K
Sbjct: 447 K 447
>sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1
SV=4
Length = 491
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/426 (62%), Positives = 330/426 (77%), Gaps = 38/426 (8%)
Query: 62 VKISIQYVMQTYNVNLYIQLHRKLSESL-SSLKELFLVMFYLELYYFPHPIMENQLNFSF 120
+K+++ +V +T+NV++Y ++HRKLSE+ SSL+EL
Sbjct: 75 LKMALSFVQRTFNVDMYEEIHRKLSEATRSSLREL------------------------- 109
Query: 121 YLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESI 180
N+ A+P+ SG + P LD +E KKA +KLEKLD DLKNYK NSIKESI
Sbjct: 110 -QNAPDAIPE---SG----VEPPALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESI 161
Query: 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSY 240
RRGHDDLGDHYLDCGDLSNALKCYSRARDYCT+ KHV++MCLNVI+VSVYLQNWSHVLSY
Sbjct: 162 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSY 221
Query: 241 VNKAEATPDFAEGK----DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFP 296
V+KAE+TP+ AE + QA+ TKLK AAGLAELA RKYK AA+ L A FD+CDFP
Sbjct: 222 VSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFP 281
Query: 297 ELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATC 356
ELLSP+N+A YGGLCALATFDR EL++ VI SS FKLFLELEPQ+RDI+ +FY SKYA+C
Sbjct: 282 ELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASC 341
Query: 357 LNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALE 416
L +L ++ DNLLLDMY+APHV TLYTQIRNRALIQYFSPY+SAD+++M+ AFNTT+ ALE
Sbjct: 342 LKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALE 401
Query: 417 NELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIK 476
+EL LIL+G I AR+DSH+KILYA+ DQRSTTFEKSL +GKE+ R++ ++LR+A+++
Sbjct: 402 DELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLR 461
Query: 477 HNICVK 482
+ I VK
Sbjct: 462 NQIHVK 467
Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 134/224 (59%), Positives = 162/224 (72%), Gaps = 34/224 (15%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DLE YA SY+GL R+ RL ++ADHCP LR EAL+MA+ +V +T+NV++Y ++HRKLSE+
Sbjct: 43 DLEQYAASYSGLMRIERLQFIADHCPTLRVEALKMALSFVQRTFNVDMYEEIHRKLSEAT 102
Query: 660 -SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPL 718
SSL+EL N+ A+P+ SG + P LD
Sbjct: 103 RSSLREL--------------------------QNAPDAIPE---SG----VEPPALDTA 129
Query: 719 LIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR 778
+E KKA +KLEKLD DLKNYK NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR
Sbjct: 130 WVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR 189
Query: 779 DYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 822
DYCT+ KHV++MCLNVI+VSVYLQNWSHVLSYV+KAE+TP+ AE
Sbjct: 190 DYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAE 233
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 52/169 (30%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQ---------------------- 860
VI SS FKLFLELEPQ+RDI+ +FY SKYA+CL +L +
Sbjct: 310 VISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQI 369
Query: 861 ---------------------------IMALENELMTLILDGQIQARIDSHNKILYAKQQ 893
+ ALE+EL LIL+G I AR+DSH+KILYA+
Sbjct: 370 RNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDV 429
Query: 894 DQRSTTFEKSLNVGKEYARKSNMLILRSAM---QVDVHMEDNDNNEQEM 939
DQRSTTFEKSL +GKE+ R++ ++LR+A+ Q+ V + ++ E+
Sbjct: 430 DQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKSPPREGSQGEL 478
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 54/73 (73%)
Query: 531 QTHTRTNDFKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 590
QT K AAGLAELA RKYK AA+ L A FD+CDFPELLSP+N+A YGGLCALAT
Sbjct: 241 QTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELLSPSNVAIYGGLCALAT 300
Query: 591 FDRSELEKQDLES 603
FDR EL++ + S
Sbjct: 301 FDRQELQRNVISS 313
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 440 YAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVK------DNLLLDMYIAP 493
+ +Q+ QR+ S + E + +I + K+ C+K DNLLLDMY+AP
Sbjct: 301 FDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAP 360
Query: 494 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
HV TLYTQIRNRALIQYFSPY+SAD+++M+ AFNTT+
Sbjct: 361 HVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTV 397
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 51/61 (83%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICV 62
LIL+G I AR+DSH+KILYA+ DQRSTTFEKSL +GKE+ R++ ++LR+A++++ I V
Sbjct: 407 LILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHV 466
Query: 63 K 63
K
Sbjct: 467 K 467
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/344 (49%), Positives = 236/344 (68%), Gaps = 7/344 (2%)
Query: 142 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNAL 201
I LDP+ IE +KK +++L+KL+ DL KSN +K+SIR +DLG+ Y GD NAL
Sbjct: 89 ILELDPVYIENLSKKNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNAL 148
Query: 202 KCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261
KC+ R RDYCT KHV+ MC N+I++ V QN++H SY+ KAE +PD +
Sbjct: 149 KCFIRTRDYCTTSKHVLAMCFNIIKLGVDTQNYTHAPSYIAKAEQSPDL------DNVSN 202
Query: 262 TKLKVAAGLAELATRKYKTAARFFLQAHFDYCD-FPELLSPNNIATYGGLCALATFDRSE 320
KL+ GL L +YK AAR F++ F+ + F +++SP +IA YGGLCALATFDR+E
Sbjct: 203 AKLRSVNGLYNLDGSRYKLAARKFIETPFEQSNVFSDIISPQDIAYYGGLCALATFDRNE 262
Query: 321 LEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTL 380
L+K+VI FK +LEL P+LR+++ FYN+KY +CL L ++ LLLD+++ HV L
Sbjct: 263 LKKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEIL 322
Query: 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILY 440
Y +IR++AL+QYFSPY S D+N M+ AFNTT+ LE E+ LI++ +IQARIDSHNK LY
Sbjct: 323 YQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLY 382
Query: 441 AKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVKDN 484
A++ DQR+TTFEK++ VG ++ SN L+LR M+ +NI N
Sbjct: 383 ARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSN 426
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 116/224 (51%), Gaps = 54/224 (24%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESL 659
DLE+Y N+Y+G ++ RLI++AD+C L EA MA++ V +T N+ LY + K
Sbjct: 31 DLETYINNYSGFTKIHRLIFIADNCKQLEVEAYNMALKEVQKTPNLELYNTIINK----- 85
Query: 660 SSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLL 719
H I+E LDP+
Sbjct: 86 ------------------SHGILE-------------------------------LDPVY 96
Query: 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD 779
IE +KK +++L+KL+ DL KSN +K+SIR +DLG+ Y GD NALKC+ R RD
Sbjct: 97 IENLSKKNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRD 156
Query: 780 YCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEV 823
YCT KHV+ MC N+I++ V QN++H SY+ KAE +PD V
Sbjct: 157 YCTTSKHVLAMCFNIIKLGVDTQNYTHAPSYIAKAEQSPDLDNV 200
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 49/151 (32%)
Query: 822 EVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQ--------------------- 860
+VI FK +LEL P+LR+++ FYN+KY +CL L +
Sbjct: 266 KVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQR 325
Query: 861 -------------------IMA---------LENELMTLILDGQIQARIDSHNKILYAKQ 892
IMA LE E+ LI++ +IQARIDSHNK LYA++
Sbjct: 326 IRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARK 385
Query: 893 QDQRSTTFEKSLNVGKEYARKSNMLILRSAM 923
DQR+TTFEK++ VG ++ SN L+LR M
Sbjct: 386 ADQRTTTFEKTVQVGSDFQNSSNSLLLRLEM 416
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNI 60
LI++ +IQARIDSHNK LYA++ DQR+TTFEK++ VG ++ SN L+LR M+ +NI
Sbjct: 364 LIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNI 421
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 471 RSAMIKHNICVKDNLLLDMY--IAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNT 528
+S M+K +I N L + Y I H N L IR R L+ N + + +T
Sbjct: 119 KSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVDT 178
Query: 529 TIQTHTRT----------------NDFKVAAGLAELATRKYKTAARFFLQAHFDYCD-FP 571
TH + + GL L +YK AAR F++ F+ + F
Sbjct: 179 QNYTHAPSYIAKAEQSPDLDNVSNAKLRSVNGLYNLDGSRYKLAARKFIETPFEQSNVFS 238
Query: 572 ELLSPNNIATYGGLCALATFDRSELEKQ 599
+++SP +IA YGGLCALATFDR+EL+K+
Sbjct: 239 DIISPQDIAYYGGLCALATFDRNELKKK 266
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 485 LLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
LLLD+++ HV LY +IR++AL+QYFSPY S D+N M+ AFNTT+
Sbjct: 309 LLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTV 354
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/334 (50%), Positives = 234/334 (70%), Gaps = 6/334 (1%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
+D E +++A K KL+N+L +Y++N IKESIR G++D GD Y CG L +A K Y
Sbjct: 103 MDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNY 162
Query: 205 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264
R RDYCT KH++ MC+N I VS+ + ++HV SYVNKAE P+ E V KL
Sbjct: 163 IRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETLE-----PMVNAKL 217
Query: 265 KVAAGLAELATRKYKTAARFFLQAHFDYCD-FPELLSPNNIATYGGLCALATFDRSELEK 323
+ A+GLA L +KYK AAR FL + + + + E+++P +IATYGGLCALA+FDRSEL++
Sbjct: 218 RCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQ 277
Query: 324 QVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383
+VI + F+ FLEL P +R+++ FY+S+YA+CL LA + NLLLD+++ HV+TLY Q
Sbjct: 278 KVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQ 337
Query: 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443
IR +ALIQY P++S DL++M+ AF T++ LE EL LI D QIQARIDSHNKILYA+
Sbjct: 338 IRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARH 397
Query: 444 QDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKH 477
DQR+ TF+K L +G E+ R ++LR+ ++KH
Sbjct: 398 ADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKH 431
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 187/445 (42%), Gaps = 170/445 (38%)
Query: 597 EKQDLESYANSYTGLARLFRLIYVADHCP---ALRHEALRMAIQYVMQTYNVNLYIQLHR 653
E D+E+YA Y G ++ RL+++A+HC AL+ +ALRMA + + N L+ ++
Sbjct: 32 EPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVN 91
Query: 654 KLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIP 713
K+ L E Y
Sbjct: 92 KIGNRLG------------EKY-------------------------------------- 101
Query: 714 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKC 773
+D E +++A K KL+N+L +Y++N IKESIR G++D GD Y CG L +A K
Sbjct: 102 GMDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKN 161
Query: 774 YSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIF------SS 827
Y R RDYCT KH++ MC+N I VS+ + ++HV SYVNKAE P+ E + +S
Sbjct: 162 YIRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNAKLRCAS 221
Query: 828 G--------FKL----FLELEPQL------------------------------------ 839
G +KL FL++ P+L
Sbjct: 222 GLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQKVID 281
Query: 840 --------------RDILVQFYNSKYATCLNLLAQIMA---------------------- 863
R+++ FY+S+YA+CL LA + +
Sbjct: 282 NINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKK 341
Query: 864 ---------------------------LENELMTLILDGQIQARIDSHNKILYAKQQDQR 896
LE EL LI D QIQARIDSHNKILYA+ DQR
Sbjct: 342 ALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQR 401
Query: 897 STTFEKSLNVGKEYARKSNMLILRS 921
+ TF+K L +G E+ R ++LR+
Sbjct: 402 NATFQKVLQMGNEFDRDVRAMLLRA 426
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 2 TLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKH 58
LI D QIQARIDSHNKILYA+ DQR+ TF+K L +G E+ R ++LR+ ++KH
Sbjct: 375 ALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKH 431
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 539 FKVAAGLAELATRKYKTAARFFLQAHFDYCD-FPELLSPNNIATYGGLCALATFDRSELE 597
+ A+GLA L +KYK AAR FL + + + + E+++P +IATYGGLCALA+FDRSEL+
Sbjct: 217 LRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELK 276
Query: 598 KQ 599
++
Sbjct: 277 QK 278
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 481 VKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTI 530
+K NLLLD+++ HV+TLY QIR +ALIQY P++S DL++M+ AF T++
Sbjct: 317 LKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSV 366
>sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnA PE=1 SV=2
Length = 498
Score = 229 bits (585), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 211/374 (56%), Gaps = 20/374 (5%)
Query: 121 YLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESI 180
YL + AL DVA + + T+D +E K + ++L+++L+ YK+N IKESI
Sbjct: 101 YLRAVQALADVAPN-----EPEATIDSDWVERSQKVVKAETDRLEHELRGYKNNLIKESI 155
Query: 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSY 240
R G+++LG HY GDL++A K YSR RD+CT H+ M +I V++ +W +V S
Sbjct: 156 RMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIERGDWLNVQSN 215
Query: 241 VNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCD-FPELL 299
V++ + E + +Q K+ A GL++L + Y AA F+ D F E+L
Sbjct: 216 VHRLRSQGGKPEEQAKHQ---PKISAAMGLSQLHSGSYLEAANSFIATDPSLGDTFNEVL 272
Query: 300 SPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNL 359
+ N++A YGGLCALA+ DR+EL+++V+ +S F+ FLELEP +R + F NSK+ CL +
Sbjct: 273 TSNDVAVYGGLCALASMDRNELQRRVLDNSSFRNFLELEPHIRRAISFFCNSKFRPCLEI 332
Query: 360 LAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAF---NTT----- 411
L + LLD+++ HV LY +IR +++ QY P+ L M+ F N T
Sbjct: 333 LEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIFVLGNPTSQSSQ 392
Query: 412 ---IQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNML 468
A EL++LI DG + ARID +L + Q D+R E L+ Y R++++
Sbjct: 393 SDSKSAFVQELISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQEAVLDSLDNYVREAHLR 452
Query: 469 ILRSAMIKHNICVK 482
+LRS +I+ + V+
Sbjct: 453 LLRSNIIRAGLEVR 466
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 131/322 (40%), Gaps = 69/322 (21%)
Query: 574 LSPNNIATYGGLCALATFDRSELEKQDLESYANSYTGLARLFRLIYVADHCPALRHEALR 633
+ P+ I A E K +LESY +YTG R RL + L +AL+
Sbjct: 27 VDPDPITGLVSTSAAPLVRVEEAPKFELESYIANYTGRTRFNRLYLIGTCSSYLAVDALK 86
Query: 634 MAIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLN 693
AI +V + YL
Sbjct: 87 AAIAEAKSGKDV-------------------------------------------ARYLR 103
Query: 694 STGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRG 753
+ AL DVA + + T+D +E K + ++L+++L+ YK+N IKESIR G
Sbjct: 104 AVQALADVAPN-----EPEATIDSDWVERSQKVVKAETDRLEHELRGYKNNLIKESIRMG 158
Query: 754 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 813
+++LG HY GDL++A K YSR RD+CT H+ M +I V++ +W +V S V++
Sbjct: 159 NEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIERGDWLNVQSNVHR 218
Query: 814 -----------AEATPDFAEVI----FSSGFKL-----FLELEPQLRDILVQFYNSKYAT 853
A+ P + + SG L F+ +P L D + S
Sbjct: 219 LRSQGGKPEEQAKHQPKISAAMGLSQLHSGSYLEAANSFIATDPSLGDTFNEVLTSNDVA 278
Query: 854 CLNLLAQIMALE-NELMTLILD 874
L + +++ NEL +LD
Sbjct: 279 VYGGLCALASMDRNELQRRVLD 300
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 541 VAAGLAELATRKYKTAARFFLQAHFDYCD-FPELLSPNNIATYGGLCALATFDRSELEKQ 599
A GL++L + Y AA F+ D F E+L+ N++A YGGLCALA+ DR+EL+++
Sbjct: 238 AAMGLSQLHSGSYLEAANSFIATDPSLGDTFNEVLTSNDVAVYGGLCALASMDRNELQRR 297
Query: 600 DLE 602
L+
Sbjct: 298 VLD 300
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 60/159 (37%)
Query: 823 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNL------------------------- 857
V+ +S F+ FLELEP +R + F NSK+ CL +
Sbjct: 298 VLDNSSFRNFLELEPHIRRAISFFCNSKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRI 357
Query: 858 -------------------LAQIMALEN----------------ELMTLILDGQIQARID 882
+A+I L N EL++LI DG + ARID
Sbjct: 358 RTKSIQQYLIPFNRVSLESMAKIFVLGNPTSQSSQSDSKSAFVQELISLIQDGTLDARID 417
Query: 883 SHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRS 921
+L + Q D+R E L+ Y R++++ +LRS
Sbjct: 418 LEKHVLVSTQGDKRIEVQEAVLDSLDNYVREAHLRLLRS 456
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 1 MTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNI 60
++LI DG + ARID +L + Q D+R E L+ Y R++++ +LRS +I+ +
Sbjct: 404 ISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQEAVLDSLDNYVREAHLRLLRSNIIRAGL 463
Query: 61 CVK 63
V+
Sbjct: 464 EVR 466
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 486 LLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAF 526
LLD+++ HV LY +IR +++ QY P+ L M+ F
Sbjct: 341 LLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIF 381
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 172/295 (58%), Gaps = 5/295 (1%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
LD +E+K K+ L +L+ YK+N IKESIR G++DLG H+ GD+ A+ +
Sbjct: 79 LDKAWMESKEKENRDTTAHLQAELQGYKNNLIKESIRMGNEDLGKHFEAIGDVEAAMDSF 138
Query: 205 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264
+ R ++ + +VD+ ++RV++ ++W + +++ + D +A+ T
Sbjct: 139 WKMRTEVSSTEQLVDLGKLLVRVAIERRDWKSIGNHLKPLNSVND---SDPKAKALKTYS 195
Query: 265 KVAAGLAELATRKYKTAARFFLQAHFDYCD--FPELLSPNNIATYGGLCALATFDRSELE 322
K+A G+A L +YK AA F++A + ++ SPN++A YGGL ALAT DR EL+
Sbjct: 196 KIANGIAALGQERYKEAAFCFVEASSGVPPEIYNQIASPNDVAIYGGLLALATMDRHELQ 255
Query: 323 KQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYT 382
++ + F+ FL+ EP +R + QF N +YA C+ +L + LLD+Y+ HV LY
Sbjct: 256 ANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPDYLLDIYLQKHVPKLYA 315
Query: 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437
IR ++++QY P+ L+ M AFN ++E+EL T+I DG++ ARID+ NK
Sbjct: 316 DIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIKDGKLNARIDAINK 370
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%)
Query: 715 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 774
LD +E+K K+ L +L+ YK+N IKESIR G++DLG H+ GD+ A+ +
Sbjct: 79 LDKAWMESKEKENRDTTAHLQAELQGYKNNLIKESIRMGNEDLGKHFEAIGDVEAAMDSF 138
Query: 775 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHV 807
+ R ++ + +VD+ ++RV++ ++W +
Sbjct: 139 WKMRTEVSSTEQLVDLGKLLVRVAIERRDWKSI 171
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 540 KVAAGLAELATRKYKTAARFFLQAHFDYCD--FPELLSPNNIATYGGLCALATFDRSELE 597
K+A G+A L +YK AA F++A + ++ SPN++A YGGL ALAT DR EL+
Sbjct: 196 KIANGIAALGQERYKEAAFCFVEASSGVPPEIYNQIASPNDVAIYGGLLALATMDRHELQ 255
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 482 KDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN 527
+ + LLD+Y+ HV LY IR ++++QY P+ L+ M AFN
Sbjct: 297 RPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFN 342
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 49/115 (42%)
Query: 821 AEVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLL---------------------A 859
A ++ + F+ FL+ EP +R + QF N +YA C+ +L A
Sbjct: 256 ANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPDYLLDIYLQKHVPKLYA 315
Query: 860 QIM----------------------------ALENELMTLILDGQIQARIDSHNK 886
I ++E+EL T+I DG++ ARID+ NK
Sbjct: 316 DIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIKDGKLNARIDAINK 370
>sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1
Length = 422
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 171/328 (52%), Gaps = 9/328 (2%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
LD +E+ LE+L +LK YK+N I+ESIR DL + D G +AL+ Y
Sbjct: 76 LDVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSY 135
Query: 205 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264
++ R+YCTN + + L ++R+S+++ N+SHVL++ ++A++T A + + +
Sbjct: 136 AKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKSTVSAA------MELTSPI 189
Query: 265 KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 324
GLA Y+ A FL+ D D +++ +I+ Y LCALA +D L ++
Sbjct: 190 YAYCGLANFCLGDYEEALAHFLKVETDTSD--GIITKTDISVYISLCALACWDHKRLIQE 247
Query: 325 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQI 384
+ + F +L+P LR L N KY+ L+ L Q + LDMY+AP + L++ I
Sbjct: 248 LERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLI 307
Query: 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444
R R+L+ Y PY + +K++V F+ +E L+ +I ++ ++DS K +Y +
Sbjct: 308 RERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPS 367
Query: 445 DQRSTTFEKSLNVGKEYARKSNMLILRS 472
+ FE N+ + S L L++
Sbjct: 368 SE-PENFEDIKNIAQTSLLYSKALYLQT 394
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 52/221 (23%)
Query: 598 KQDLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQ-TYNVNLYIQLHRKLS 656
+++L+ Y + Y +++FR ++VA + LR + AI+ + + TYN+ LY
Sbjct: 9 QEELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELY-------- 60
Query: 657 ESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLD 716
SL E F F EN+ LD
Sbjct: 61 ---QSLFEEFQDCF------------ENE----------------------------QLD 77
Query: 717 PLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSR 776
+E+ LE+L +LK YK+N I+ESIR DL + D G +AL+ Y++
Sbjct: 78 VEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAK 137
Query: 777 ARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 817
R+YCTN + + L ++R+S+++ N+SHVL++ ++A++T
Sbjct: 138 VREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKST 178
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 487 LDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN 527
LDMY+AP + L++ IR R+L+ Y PY + +K++V F+
Sbjct: 292 LDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFH 332
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 174/378 (46%), Gaps = 43/378 (11%)
Query: 142 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNAL 201
IP D IE ++L + K +K +KES RR +DL HY+ G + A+
Sbjct: 159 IPLRDQKWIEENGATWQSTTDQLQAEYKRHKDEGVKESTRRAMEDLFQHYMMAGKIDEAI 218
Query: 202 KCYSRA-RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA---------------- 244
+ YSR RDYCT KH ++M +N + V++ +W + + N A
Sbjct: 219 RLYSRGIRDYCTQLKHSINMWINWMEVAICANDWGKLDTVTNTAYRSLKDADDAEKNSQQ 278
Query: 245 ---------EATPDFAEGKDNNQAVFT------------KLKVAAGLAELATRKYKTAAR 283
E P E +D N + T K A L +L ++Y
Sbjct: 279 SQQAPPQRGENAPYMVE-RDPNAPIQTLTNRQLIETALAKCLAAQVLLKLRNKRYSQVVE 337
Query: 284 FFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRD 343
LQ + ++ +++ YG L A+AT R++L+ QV + F+ LE EPQL +
Sbjct: 338 TILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLKLQVSGNGTFRKLLESEPQLIE 397
Query: 344 ILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNK 403
+L + +S++ C ++ + LLLD +I+ +V+ L+ +IR + ++QY PY + +
Sbjct: 398 LLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMAT 457
Query: 404 MSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQR-STTFEKSLNVGKEYA 462
M+ A + L+ L+ LI + +ID + I+ + D+R K +NV + A
Sbjct: 458 MAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIV--RILDERDENAILKRVNVTCDRA 515
Query: 463 -RKSNMLILRSAMIKHNI 479
+K+ L+ ++ + NI
Sbjct: 516 TQKAKSLLWKTTLAGANI 533
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 92/217 (42%), Gaps = 41/217 (18%)
Query: 600 DLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQ-TYNVNLYIQLHRKLSES 658
D+ES A SY A R ++A HCP LR +A I Y+ + T ++ Y+ +L
Sbjct: 85 DIESLACSYDSNAFFLRARFIARHCPILRADAYISLINYLKEHTTDITHYVAFFNELESE 144
Query: 659 LSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPL 718
L+ KE QLNF IP D
Sbjct: 145 LAR-KEF----------------KNRQLNFQ----------------------IPLRDQK 165
Query: 719 LIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA- 777
IE ++L + K +K +KES RR +DL HY+ G + A++ YSR
Sbjct: 166 WIEENGATWQSTTDQLQAEYKRHKDEGVKESTRRAMEDLFQHYMMAGKIDEAIRLYSRGI 225
Query: 778 RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814
RDYCT KH ++M +N + V++ +W + + N A
Sbjct: 226 RDYCTQLKHSINMWINWMEVAICANDWGKLDTVTNTA 262
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 481 VKDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT 529
VK LLLD +I+ +V+ L+ +IR + ++QY PY + + M+ A +
Sbjct: 417 VKPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMS 465
>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus
GN=PSMD6 PE=2 SV=1
Length = 389
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 5/314 (1%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
+D L+ K +L++LD +L++ + N + IR ++ GD AL +
Sbjct: 65 MDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAF 124
Query: 205 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264
R D H +D+ ++R+ ++ + + KA++ EG D ++ +L
Sbjct: 125 RRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSL--IEEGGDWDRR--NRL 180
Query: 265 KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 324
KV GL +A R +K AA FL + + EL+ TY ++ +R +L ++
Sbjct: 181 KVYQGLYCVAIRDFKQAAELFLDTVSTFTSY-ELMDYKTFVTYTVYVSMIALERPDLREK 239
Query: 325 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQI 384
VI + L P +R L Y +Y+ LA + + D APH ++
Sbjct: 240 VIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREM 299
Query: 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444
R A Q Y S L M+ AF ++ ++ EL I G++ +ID N+++ +
Sbjct: 300 RIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEVVETNRP 359
Query: 445 DQRSTTFEKSLNVG 458
D ++ +++++ G
Sbjct: 360 DSKNWQYQETIKKG 373
>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa
subsp. japonica GN=RPN7 PE=2 SV=1
Length = 389
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 160/364 (43%), Gaps = 18/364 (4%)
Query: 103 ELYYFPHPIMENQLNFSFYLNSTGALP--DVAS-SGNMGPQDIPTLDPLLIETKNKKAAM 159
+L+ HP +++ + A+ D+AS ++G + D L+ +
Sbjct: 20 KLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEE 79
Query: 160 KLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV-- 217
++ KLD + + + N + +R H +++ G+ AL+ T GK V
Sbjct: 80 EIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK-----VTEGKTVAV 134
Query: 218 ---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELA 274
+D+ + +++ + ++ + ++KA+ F EG D + +LKV GL +A
Sbjct: 135 GQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKL--FEEGGDWERK--NRLKVYEGLYCMA 190
Query: 275 TRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLF 334
TR +K AA FL + + + EL + Y L ++ + DR L+ +V+ +
Sbjct: 191 TRNFKKAASLFLDSISTFTTY-ELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAV 249
Query: 335 LELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFS 394
+ P L + L YN +Y + + + + + LD Y+ PH ++R Q+
Sbjct: 250 IGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLE 309
Query: 395 PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKS 454
Y S + M+ AF T+ ++ EL I G++ +ID +L + D R+ ++ +
Sbjct: 310 SYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQAT 369
Query: 455 LNVG 458
+ G
Sbjct: 370 IKQG 373
>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus
GN=Psmd6 PE=1 SV=1
Length = 389
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 138/308 (44%), Gaps = 6/308 (1%)
Query: 152 TKNKKA-AMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDY 210
+K KKA +L++LD +L++ + N + IR ++ GD AL + + D
Sbjct: 71 SKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDK 130
Query: 211 CTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGL 270
H +D+ ++R+ ++ + + KA++ EG D ++ +LKV GL
Sbjct: 131 TVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSL--IEEGGDWDRR--NRLKVYQGL 186
Query: 271 AELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSG 330
+A R +K AA FL + + EL+ TY ++ +R +L ++VI +
Sbjct: 187 YCVAIRDFKQAAELFLDTVSTFTSY-ELMDYKTFVTYTVYVSMIALERPDLREKVIKGAE 245
Query: 331 FKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALI 390
L P +R L Y +Y+ LA + + D APH ++R A
Sbjct: 246 ILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYS 305
Query: 391 QYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTT 450
Q Y S L M+ AF + ++ EL I G++ +ID N+I+ + D ++
Sbjct: 306 QLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQ 365
Query: 451 FEKSLNVG 458
+++++ G
Sbjct: 366 YQETIKKG 373
>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens
GN=PSMD6 PE=1 SV=1
Length = 389
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 5/314 (1%)
Query: 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCY 204
+D L+ K +L++LD +L++ + N + IR ++ GD AL +
Sbjct: 65 IDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAF 124
Query: 205 SRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264
+ D H +D+ ++R+ ++ + + KA++ EG D ++ +L
Sbjct: 125 RKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSL--IEEGGDWDRR--NRL 180
Query: 265 KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 324
KV GL +A R +K AA FL + + EL+ TY ++ +R +L ++
Sbjct: 181 KVYQGLYCVAIRDFKQAAELFLDTVSTFTSY-ELMDYKTFVTYTVYVSMIALERPDLREK 239
Query: 325 VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQI 384
VI + L P +R L Y +Y+ LA + + D APH ++
Sbjct: 240 VIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREM 299
Query: 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444
R A Q Y S L M+ AF ++ ++ EL I G++ +ID N+I+ +
Sbjct: 300 RIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRP 359
Query: 445 DQRSTTFEKSLNVG 458
D ++ +++++ G
Sbjct: 360 DSKNWQYQETIKKG 373
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 144/315 (45%), Gaps = 5/315 (1%)
Query: 144 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKC 203
T+D L+ + +++E+LD +++ + N + +R + ++ GD + A
Sbjct: 64 TVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETA 123
Query: 204 YSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263
+ + + + H +D+ ++IR+ ++ + + ++KA+ + EG D ++ +
Sbjct: 124 FRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIE--EGGDWDRR--NR 179
Query: 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEK 323
LKV G+ +A R +K AA FFL + + EL+ Y A+ R+EL
Sbjct: 180 LKVYQGVYSVAVRDFKAAATFFLDTVSTFTSY-ELMDYPTFVRYTVYVAMIALPRNELRD 238
Query: 324 QVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383
+VI S + L P ++ L YN +Y LA + L LD I PH +
Sbjct: 239 KVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVRE 298
Query: 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443
+R Q Y S L M+ +F T++ ++ EL I G++ A++D I+ +
Sbjct: 299 MRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNR 358
Query: 444 QDQRSTTFEKSLNVG 458
D ++ ++ ++ G
Sbjct: 359 PDNKNWQYQATIKQG 373
>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis
elegans GN=rpn-7 PE=3 SV=1
Length = 410
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 147/307 (47%), Gaps = 14/307 (4%)
Query: 160 KLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD 219
K++++ ++++ + N + +R+G ++Y GD NALK Y+ + + +D
Sbjct: 94 KIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRID 153
Query: 220 MCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYK 279
+ +IRV ++ + + ++ KA+ + +G D + +L+ L ++ R +
Sbjct: 154 VVFAMIRVGLFFLDHHLINKFITKAKELME--QGGDWERK--NRLRSYEALYRMSVRDFA 209
Query: 280 TAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFS-------SGFK 332
AA FL+A + + EL++ N+ Y + DR +L +VI +G
Sbjct: 210 GAADLFLEAVPTFGSY-ELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGG 268
Query: 333 LFLELEPQLRDILVQFYNSKYATCLNLLAQI-MDNLLLDMYIAPHVNTLYTQIRNRALIQ 391
L L P +R+ L +Y+ Y LA + + D Y++PH N +R+RA Q
Sbjct: 269 LNGTLIP-VREYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQ 327
Query: 392 YFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTF 451
+ +PY + ++ M+ F + ++ EL LI GQ+Q RID+ N ++ +D ++ +
Sbjct: 328 FLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLY 387
Query: 452 EKSLNVG 458
+ + G
Sbjct: 388 KAVIKDG 394
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 45/86 (52%)
Query: 730 KLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD 789
K++++ ++++ + N + +R+G ++Y GD NALK Y+ + + +D
Sbjct: 94 KIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRID 153
Query: 790 MCLNVIRVSVYLQNWSHVLSYVNKAE 815
+ +IRV ++ + + ++ KA+
Sbjct: 154 VVFAMIRVGLFFLDHHLINKFITKAK 179
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 141/315 (44%), Gaps = 5/315 (1%)
Query: 144 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKC 203
T D L+ + +L+ LDN + + N + IR + D Y GD A++
Sbjct: 57 TEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEM 116
Query: 204 YSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263
Y + + +D+ +IR+ ++ + V + KA++ + EG D ++ +
Sbjct: 117 YRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLVE--EGGDWDRK--NR 172
Query: 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEK 323
LK + +++ R++K A+ +L+ + E + + Y +L DR L++
Sbjct: 173 LKTYEAVYKMSIRQFKEASDLYLETVASFTS-TEFIDYSRFIQYLIFTSLLHLDRVSLKQ 231
Query: 324 QVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383
+VI S + P+L+D+L FYN YA LA D++ D Y+A H +
Sbjct: 232 KVIDSPDVLSVINDTPKLQDLLQSFYNGDYANFFGALAHFSDSIKGDRYLAEHSRFFTRE 291
Query: 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443
+R A Q+ Y S L MS F + ++ EL + G++ +ID + ++ +
Sbjct: 292 MRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDKVSGVIETTR 351
Query: 444 QDQRSTTFEKSLNVG 458
D ++ ++ +L G
Sbjct: 352 SDAKNHLYKTTLQQG 366
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 158/375 (42%), Gaps = 38/375 (10%)
Query: 108 PHPIMENQLNFSFYLNSTGALPDVAS------------SGNMGP-------QDIPTLDPL 148
PH I+ N+L +L + +PD+ S M P + LD
Sbjct: 11 PHLILANKL----FLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQS 66
Query: 149 LIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR 208
L+E+ +L+KLD + + + N + +R H +++ D AL+
Sbjct: 67 LLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLK--- 123
Query: 209 DYCTNGKHV-----VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263
T GK V +D+ ++++ + ++ V ++KA+ F EG D + +
Sbjct: 124 --LTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKL--FEEGGDWERK--NR 177
Query: 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEK 323
LKV GL ++TR +K AA FL + + + E+ Y L ++ T DR L++
Sbjct: 178 LKVYEGLYCMSTRNFKKAASLFLDSISTFTTY-EIFPYETFIFYTVLTSIITLDRVSLKQ 236
Query: 324 QVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383
+V+ + L P L + L Y +Y + A + + D Y+ PH +
Sbjct: 237 KVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMRE 296
Query: 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443
+R Q+ Y S + M+ AF ++ ++ EL I G++ +ID +L +
Sbjct: 297 VRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNR 356
Query: 444 QDQRSTTFEKSLNVG 458
D ++ ++ ++ G
Sbjct: 357 PDAKNALYQATIKQG 371
>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3
Length = 429
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 9/270 (3%)
Query: 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 245
+LG++Y GD NA K ++ + +D+ L + R+ + + +V K E
Sbjct: 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYV---KEKLE 192
Query: 246 ATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIA 305
A E K + + K G+ LA R +K AA+ + + + EL S +IA
Sbjct: 193 AVNSMIE-KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI-ELTSYESIA 250
Query: 306 TYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDI---LVQFYNSKYATCLNLLAQ 362
TY + L T +R++L+ +VI S + L+ I + Y S YA+ L +
Sbjct: 251 TYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLE 310
Query: 363 IMDNLLLD-MYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMT 421
N+L+ Y+ H + ++R + Q Y + L M+ AF ++ L+N+L
Sbjct: 311 TYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGK 370
Query: 422 LILDGQIQARIDSHNKILYAKQQDQRSTTF 451
I + Q+ ID N I+ + D ++ +
Sbjct: 371 FIPNKQLNCVIDRVNGIVETNRPDNKNAQY 400
>sp|P68352|CSN1_BRAOL COP9 signalosome complex subunit 1 (Fragment) OS=Brassica
oleracea GN=CSN1 PE=1 SV=1
Length = 37
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 3 LILDGQIQARIDSHNKILYAKQQDQRSTTFEK 34
LI D QIQARIDSHNKILYA+ DQR+ TF+K
Sbjct: 6 LITDNQIQARIDSHNKILYARHADQRNATFQK 37
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 422 LILDGQIQARIDSHNKILYAKQQDQRSTTFEK 453
LI D QIQARIDSHNKILYA+ DQR+ TF+K
Sbjct: 6 LITDNQIQARIDSHNKILYARHADQRNATFQK 37
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 871 LILDGQIQARIDSHNKILYAKQQDQRSTTFEK 902
LI D QIQARIDSHNKILYA+ DQR+ TF+K
Sbjct: 6 LITDNQIQARIDSHNKILYARHADQRNATFQK 37
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 359 LLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENE 418
+L Q N++ D +I H+ L IR + LI+ PY + + ++ A N +E+
Sbjct: 330 ILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESL 389
Query: 419 LMTLILDGQIQARIDSHNKIL 439
L++ ILD I+ RID N++L
Sbjct: 390 LVSCILDDTIKGRIDQVNQVL 410
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
N++ D +I H+ L IR + LI+ PY + +S N + +E+ L+ ILD
Sbjct: 334 NIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILD 393
Query: 426 GQIQARIDSHNKIL---YAKQQDQRSTTFEKSLN 456
I RID N++L + K+ R T +K N
Sbjct: 394 NTIHGRIDQVNQLLELDHQKRGGARYTALDKWTN 427
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
N++ D +I H+ L IR + LI+ PY + +S N + +E+ L+ ILD
Sbjct: 336 NIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILD 395
Query: 426 GQIQARIDSHNKIL---YAKQQDQRSTTFEKSLN 456
I RID N++L + K+ R T +K N
Sbjct: 396 NTIHGRIDQVNQLLELDHQKRGGARYTALDKWTN 429
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
N++ D +I H+ L IR + LI+ PY + +S N + +E+ L+ ILD
Sbjct: 336 NIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILD 395
Query: 426 GQIQARIDSHNKIL---YAKQQDQRSTTFEKSLN 456
I RID N++L + K+ R T +K N
Sbjct: 396 NTIHGRIDQVNQLLELDHQKRGGARYTALDKWTN 429
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
N++ D +I H+ L IR + LI+ PY + +S N + +E+ L+ ILD
Sbjct: 336 NIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILD 395
Query: 426 GQIQARIDSHNKIL---YAKQQDQRSTTFEKSLN 456
I RID N++L + K+ R T +K N
Sbjct: 396 NTIHGRIDQVNQLLELDHQKRGGARYTALDKWTN 429
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
N++ D +I H+ L IR + LI+ PY + +S N + +E+ L+ ILD
Sbjct: 336 NIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILD 395
Query: 426 GQIQARIDSHNKIL---YAKQQDQRSTTFEKSLN 456
I RID N++L + K+ R T +K N
Sbjct: 396 NTINGRIDQVNQLLELDHQKRGGARYTALDKWTN 429
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 21/317 (6%)
Query: 160 KLEKLD--NDLKNYKSNSIKESIRRG-HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH 216
K EK+D + + +++ +E +RR L Y D D +NA K A+D K
Sbjct: 95 KKEKIDLLTNCIGWATSNKREFLRRSLQARLIRLYNDIRDFTNAQKL---AQDLSKELKK 151
Query: 217 VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAG------- 269
+ D L +I VSV S L+ N A+A K N + F ++ A
Sbjct: 152 LEDREL-LIEVSVEESKSSFNLN--NLAKAKTALLTAKTNTNSAFASPQLQASVDMQSGV 208
Query: 270 LAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSS 329
L R YKT+ +F +A + + ++ + Y LC + + +L + ++
Sbjct: 209 LYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAG--LLAA 266
Query: 330 GFKLFLELEPQL---RDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRN 386
+ + P++ R + F + LA+ L+ D +A H L +
Sbjct: 267 KEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLE 326
Query: 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQ 446
+ + + PY +L+ ++ T+ +E + +ILD ++ ID H + +
Sbjct: 327 KEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVYPKAD 386
Query: 447 RSTTFEKSLNVGKEYAR 463
+ F +SL +E +
Sbjct: 387 AANQFTRSLKTIRELTK 403
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 345 LVQFYNSKYATCLNLLAQIMD-NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNK 403
LV+ Y + T + + Q ++L D +I +V+ + IR++ LI+ PY S L+
Sbjct: 316 LVEAYQIRDITAVERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSL 375
Query: 404 MSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443
++ +I +E L+ LI+D ++ +ID N++ Q
Sbjct: 376 LAKKLGVSISIIEQALVGLIIDERVNGKIDMVNEVFTISQ 415
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
+LL D +IA +++ + +R + +++ +PY ++ ++ T + + L LI+D
Sbjct: 338 DLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVD 397
Query: 426 GQIQARIDSHNKIL 439
G+++ RID H +L
Sbjct: 398 GRVKGRIDEHKGVL 411
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 5/204 (2%)
Query: 276 RKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFL 335
R YKT+ +F +A Y + ++ Y LC + + ++ + S+ L
Sbjct: 210 RDYKTSFSYFYEAFEGYGSIGDKVNATGALKYMILCKIMLNETEQI--PAMLSTKEVLPY 267
Query: 336 ELEPQL---RDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQY 392
P++ R + F + L + L+ D +A H L + + + +
Sbjct: 268 NTSPRIVAIRAMADAFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRV 327
Query: 393 FSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFE 452
PY +L+ ++ T+ E + +ILD ++ ID H + + + F
Sbjct: 328 IEPYSEIELSYIARVIGMTVPPTEKAIARMILDKKLMGSIDQHGDTVVIYPKAGATKQFT 387
Query: 453 KSLNVGKEYARKSNMLILRSAMIK 476
++L +E + ++ R+ +IK
Sbjct: 388 RALTTIRELTKTVDVSYSRTKVIK 411
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 363 IMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTL 422
IMD+ + MYI L IR + L++ PY ++ +S N +E+ L++L
Sbjct: 341 IMDDPFIRMYI----EDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSL 396
Query: 423 ILDGQIQARIDSHNKIL 439
ILD +I+ ID N+ L
Sbjct: 397 ILDNKIRGSIDQVNQQL 413
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%)
Query: 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425
++L D +IA +++ + +R +A+++ +PY L+ +S ++ ++ L LILD
Sbjct: 340 DVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILD 399
Query: 426 GQIQARIDSHN 436
++ A+ID +
Sbjct: 400 KKLNAKIDQES 410
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 43/81 (53%)
Query: 359 LLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENE 418
++A D+++ D +I H L IR + L++ PY + ++ +S + + + +
Sbjct: 329 IMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQKEVIHL 388
Query: 419 LMTLILDGQIQARIDSHNKIL 439
L+ ILD ++A+I+ + ++
Sbjct: 389 LVDAILDDGLEAKINEESGMI 409
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 50/116 (43%)
Query: 360 LAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENEL 419
L Q L+ D H N LY + L + P+ +++ +S Q +E +L
Sbjct: 318 LKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKL 377
Query: 420 MTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMI 475
+ILD +D N LY + + T++ +L + + + + L +++++
Sbjct: 378 SQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 363 IMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTL 422
IMD D +I ++ L ++R + L++ PY + +S N + L++L
Sbjct: 333 IMD----DPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSL 388
Query: 423 ILDGQIQARIDSHNKIL 439
ILD +I ID N+ L
Sbjct: 389 ILDSRIDGHIDEMNRYL 405
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 10/228 (4%)
Query: 236 HVLSYVNKAEATPDFAEGKDNNQAVFTKLKVA----AGLAELATRK-YKTAARFFLQAH- 289
H LS + KA A A N KL+ A +G+ A K +KTA +F +A
Sbjct: 178 HALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFFEAFE 237
Query: 290 -FDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQF 348
+D D P ++ Y LC + E++ + G + L+ I
Sbjct: 238 GYDSIDSPRAVTA---LKYMLLCKIMLSLPEEVQALISGKLGLRYAGRQTDALKCIAQAS 294
Query: 349 YNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAF 408
N A L + L D I H+ LY + + LI+ P+ + ++
Sbjct: 295 KNRSLADFEKALTEYTKELRDDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLI 354
Query: 409 NTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLN 456
+ +E +L +ILD + +D +L ++ T+E +L
Sbjct: 355 KLSKNDVERKLSQMILDKKFHGILDQGEDVLIIFEEPPVDKTYEAALE 402
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%)
Query: 370 DMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429
D I H+++LY + + L++ P+ +++ ++ + +E +L +ILD
Sbjct: 314 DPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFY 373
Query: 430 ARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLI 469
+D + L + Q+ T+E +L V K ++LI
Sbjct: 374 GILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLI 413
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 10/229 (4%)
Query: 236 HVLSYVNKAEATPDFAEGKDNNQAVFTKLKVA----AGLAELATRK-YKTAARFFLQA-- 288
H LS + KA A A N KL+ A +G+ A K +KTA +F +A
Sbjct: 177 HALSNLPKARAALTSARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFE 236
Query: 289 HFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQF 348
+D D P ++ Y LC + +++ + + L+ +
Sbjct: 237 GYDSIDSPRAITA---LKYMLLCKIMLNSPEDVQSLISGKLALRYAGRQTEALKCVAQAS 293
Query: 349 YNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAF 408
N A L + L D I+ H+ LY + + LI+ P+ + +S
Sbjct: 294 KNRSLADFEKALTEYKAELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELI 353
Query: 409 NTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNV 457
+ +E +L +ILD + +D +L + T+E SL
Sbjct: 354 KLSKGDVERKLSQMILDQKFHGILDQGEGVLIVFDEPPVDKTYEASLET 402
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 33.5 bits (75), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 370 DMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429
D+ + H+ TLY + + L + PY + ++ + + +E +L +ILD +
Sbjct: 316 DVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFS 375
Query: 430 ARIDSHNKILYAKQQDQRSTTFEKSLN 456
+D +L ++ T+E+ L
Sbjct: 376 GILDQGEGVLIVFEETPVDKTYERVLE 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,169,324
Number of Sequences: 539616
Number of extensions: 13444930
Number of successful extensions: 35554
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 35331
Number of HSP's gapped (non-prelim): 201
length of query: 971
length of database: 191,569,459
effective HSP length: 127
effective length of query: 844
effective length of database: 123,038,227
effective search space: 103844263588
effective search space used: 103844263588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)