Query psy11733
Match_columns 971
No_of_seqs 409 out of 920
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:31:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0686|consensus 100.0 4.2E-88 9.1E-93 738.7 36.7 414 30-484 34-451 (466)
2 KOG0686|consensus 100.0 5E-66 1.1E-70 565.3 28.9 303 599-958 34-458 (466)
3 KOG0687|consensus 100.0 8.5E-63 1.8E-67 527.4 35.0 322 142-468 65-387 (393)
4 COG5187 RPN7 26S proteasome re 100.0 7.2E-50 1.6E-54 422.2 27.9 322 142-468 76-401 (412)
5 KOG0687|consensus 100.0 3.7E-45 8E-50 392.1 25.1 207 712-918 65-388 (393)
6 PF10602 RPN7: 26S proteasome 100.0 9.4E-42 2E-46 349.6 17.4 174 146-324 1-177 (177)
7 COG5187 RPN7 26S proteasome re 100.0 1.1E-32 2.4E-37 292.2 17.6 206 712-917 76-401 (412)
8 KOG2758|consensus 100.0 2.8E-30 6E-35 276.8 21.7 311 143-482 95-424 (432)
9 PF10602 RPN7: 26S proteasome 99.9 2.1E-27 4.5E-32 243.8 11.3 104 716-819 1-104 (177)
10 KOG1463|consensus 99.9 2E-26 4.4E-31 249.4 18.1 269 186-461 133-408 (411)
11 KOG1464|consensus 99.9 2E-25 4.3E-30 235.9 21.4 279 167-460 134-427 (440)
12 COG5159 RPN6 26S proteasome re 99.9 8.1E-23 1.8E-27 217.3 18.7 283 186-475 130-420 (421)
13 PF01399 PCI: PCI domain; Int 99.6 3.9E-15 8.4E-20 137.9 12.0 104 339-442 1-104 (105)
14 smart00088 PINT motif in prote 99.3 1.5E-11 3.3E-16 111.8 9.2 74 375-448 1-74 (88)
15 smart00753 PAM PCI/PINT associ 99.3 1.5E-11 3.3E-16 111.8 9.2 74 375-448 1-74 (88)
16 KOG2908|consensus 98.9 4.2E-07 9.2E-12 100.5 26.1 264 190-464 84-360 (380)
17 KOG1498|consensus 98.6 7.4E-05 1.6E-09 84.5 32.1 355 31-444 27-399 (439)
18 KOG2581|consensus 98.4 3.1E-05 6.8E-10 87.7 20.6 203 224-442 215-422 (493)
19 COG5071 RPN5 26S proteasome re 98.2 9.4E-05 2E-09 81.1 19.4 278 167-461 115-413 (439)
20 KOG1497|consensus 97.8 0.00091 2E-08 74.2 18.0 240 179-443 101-362 (399)
21 KOG2582|consensus 97.7 0.0023 5E-08 72.2 18.4 289 179-483 100-396 (422)
22 KOG1076|consensus 97.5 0.017 3.7E-07 69.6 23.0 200 257-463 525-782 (843)
23 KOG2753|consensus 97.4 0.0074 1.6E-07 67.5 17.7 166 274-447 177-343 (378)
24 PF01399 PCI: PCI domain; Int 97.2 0.00094 2E-08 61.7 6.8 55 837-891 1-104 (105)
25 PF14938 SNAP: Soluble NSF att 96.7 0.081 1.7E-06 58.5 18.0 190 178-379 72-276 (282)
26 PF09976 TPR_21: Tetratricopep 95.8 0.21 4.6E-06 49.5 14.0 102 176-288 43-144 (145)
27 KOG2758|consensus 95.6 2 4.3E-05 48.7 21.2 71 746-816 124-195 (432)
28 smart00088 PINT motif in prote 95.4 0.033 7.2E-07 50.6 5.8 35 863-897 40-74 (88)
29 smart00753 PAM PCI/PINT associ 95.4 0.033 7.2E-07 50.6 5.8 35 863-897 40-74 (88)
30 KOG2688|consensus 95.0 0.61 1.3E-05 54.2 15.9 271 145-445 94-386 (394)
31 PF10075 PCI_Csn8: COP9 signal 95.0 0.054 1.2E-06 54.1 6.6 77 341-421 44-120 (143)
32 cd00189 TPR Tetratricopeptide 94.9 0.33 7.3E-06 40.6 10.3 93 183-288 2-94 (100)
33 TIGR02795 tol_pal_ybgF tol-pal 94.8 0.4 8.7E-06 44.2 11.5 99 183-288 4-102 (119)
34 PF10255 Paf67: RNA polymerase 94.8 0.28 6.1E-06 57.3 12.4 190 221-422 125-345 (404)
35 PF14938 SNAP: Soluble NSF att 94.2 3.1 6.8E-05 46.1 18.6 175 162-346 95-275 (282)
36 PF13424 TPR_12: Tetratricopep 93.8 0.32 7E-06 42.6 8.1 70 178-247 2-75 (78)
37 COG5600 Transcription-associat 93.4 4.9 0.00011 46.5 18.4 237 195-446 144-406 (413)
38 PF09756 DDRGK: DDRGK domain; 93.3 0.14 3.1E-06 53.9 5.6 58 387-444 102-159 (188)
39 KOG0548|consensus 92.1 7.1 0.00015 46.9 17.9 140 185-346 362-506 (539)
40 TIGR02552 LcrH_SycD type III s 92.1 2 4.3E-05 41.2 11.5 94 182-288 18-111 (135)
41 TIGR02521 type_IV_pilW type IV 91.8 16 0.00034 36.8 20.7 93 183-288 33-125 (234)
42 TIGR02521 type_IV_pilW type IV 91.5 3.8 8.2E-05 41.3 13.4 97 181-288 65-161 (234)
43 PF13414 TPR_11: TPR repeat; P 91.1 1 2.2E-05 38.4 7.5 61 183-246 5-66 (69)
44 PF13424 TPR_12: Tetratricopep 90.6 0.83 1.8E-05 40.0 6.6 67 749-815 3-73 (78)
45 TIGR00990 3a0801s09 mitochondr 90.6 19 0.00042 44.2 20.7 66 179-247 363-428 (615)
46 KOG1840|consensus 90.4 3.1 6.7E-05 50.3 13.2 126 161-288 261-393 (508)
47 PF12895 Apc3: Anaphase-promot 89.7 1.5 3.2E-05 39.3 7.6 83 193-287 1-83 (84)
48 PF13176 TPR_7: Tetratricopept 89.5 0.51 1.1E-05 36.1 3.8 33 183-215 1-33 (36)
49 KOG2072|consensus 89.1 21 0.00046 45.0 18.7 86 358-443 407-493 (988)
50 KOG1125|consensus 88.7 18 0.00038 44.1 17.4 157 144-328 404-567 (579)
51 PF13176 TPR_7: Tetratricopept 88.7 0.33 7.2E-06 37.1 2.3 32 753-784 1-32 (36)
52 PRK11788 tetratricopeptide rep 88.3 44 0.00096 37.8 20.0 98 183-288 109-206 (389)
53 PF09012 FeoC: FeoC like trans 88.2 0.69 1.5E-05 40.7 4.2 47 388-434 4-50 (69)
54 CHL00033 ycf3 photosystem I as 88.0 6.4 0.00014 39.8 11.8 108 178-288 32-139 (168)
55 PRK15363 pathogenicity island 87.9 7.6 0.00016 40.1 12.1 100 176-288 29-129 (157)
56 PF13414 TPR_11: TPR repeat; P 87.8 1.5 3.2E-05 37.3 6.0 61 752-815 4-65 (69)
57 TIGR00990 3a0801s09 mitochondr 87.4 4.5 9.8E-05 49.6 12.2 93 182-288 128-220 (615)
58 PRK02603 photosystem I assembl 87.4 5.5 0.00012 40.6 10.9 69 179-247 33-101 (172)
59 PRK11447 cellulose synthase su 86.6 32 0.00069 45.9 20.0 99 180-288 302-411 (1157)
60 PF13429 TPR_15: Tetratricopep 86.5 5.8 0.00013 43.3 11.3 177 183-383 80-260 (280)
61 KOG0547|consensus 86.3 2.5 5.4E-05 50.3 8.4 61 184-247 118-178 (606)
62 TIGR03302 OM_YfiO outer membra 86.2 18 0.00038 38.2 14.4 106 179-288 68-192 (235)
63 PRK11788 tetratricopeptide rep 86.2 6.8 0.00015 44.3 11.9 99 180-288 140-240 (389)
64 PF12688 TPR_5: Tetratrico pep 85.9 9.4 0.0002 37.5 11.1 99 183-288 3-101 (120)
65 PRK15359 type III secretion sy 85.7 9.6 0.00021 38.0 11.4 92 184-288 27-118 (144)
66 PRK15331 chaperone protein Sic 85.7 11 0.00024 39.3 11.9 102 174-288 30-131 (165)
67 KOG2908|consensus 85.7 17 0.00037 41.8 14.2 90 824-913 221-360 (380)
68 PF13432 TPR_16: Tetratricopep 85.6 3.1 6.6E-05 35.1 6.7 59 185-246 1-59 (65)
69 KOG0547|consensus 85.5 1.6 3.4E-05 51.9 6.3 59 754-816 118-177 (606)
70 PF03399 SAC3_GANP: SAC3/GANP/ 85.3 3.6 7.7E-05 43.0 8.5 63 342-409 139-203 (204)
71 PF13429 TPR_15: Tetratricopep 85.3 4.4 9.6E-05 44.3 9.6 117 159-288 124-240 (280)
72 KOG2376|consensus 85.1 40 0.00086 41.4 17.6 127 159-287 90-249 (652)
73 PF08220 HTH_DeoR: DeoR-like h 85.0 1.4 3E-05 37.5 4.2 44 385-428 1-44 (57)
74 TIGR02795 tol_pal_ybgF tol-pal 84.8 4.5 9.8E-05 37.2 8.1 67 181-247 39-105 (119)
75 COG3063 PilF Tfp pilus assembl 84.5 48 0.001 36.6 16.4 158 180-364 34-200 (250)
76 PF09976 TPR_21: Tetratricopep 84.2 7.7 0.00017 38.4 9.9 67 748-814 45-111 (145)
77 PRK10370 formate-dependent nit 84.0 16 0.00034 38.7 12.6 95 181-288 73-170 (198)
78 smart00345 HTH_GNTR helix_turn 84.0 2.5 5.4E-05 34.8 5.4 49 381-429 2-51 (60)
79 PF07719 TPR_2: Tetratricopept 84.0 2.2 4.7E-05 31.2 4.5 30 183-212 3-32 (34)
80 PLN03088 SGT1, suppressor of 83.9 7.8 0.00017 44.7 11.1 92 184-288 5-96 (356)
81 KOG3054|consensus 83.7 1.8 3.9E-05 47.0 5.4 55 389-443 205-259 (299)
82 KOG0624|consensus 83.4 40 0.00088 39.1 15.9 205 159-411 17-221 (504)
83 PF13181 TPR_8: Tetratricopept 83.0 2.5 5.4E-05 31.1 4.5 31 182-212 2-32 (34)
84 PRK10803 tol-pal system protei 82.1 8.2 0.00018 42.9 10.0 87 157-246 159-245 (263)
85 PF12569 NARP1: NMDA receptor- 82.1 65 0.0014 39.4 18.3 126 179-319 192-319 (517)
86 TIGR03302 OM_YfiO outer membra 82.0 12 0.00027 39.4 11.0 99 183-288 35-141 (235)
87 KOG1586|consensus 81.6 33 0.00071 38.0 13.8 195 181-384 54-280 (288)
88 cd00189 TPR Tetratricopeptide 81.1 12 0.00025 31.0 8.6 62 182-246 35-96 (100)
89 TIGR02917 PEP_TPR_lipo putativ 80.6 1.5E+02 0.0033 36.5 41.1 100 177-288 52-151 (899)
90 PRK10866 outer membrane biogen 80.3 88 0.0019 34.2 17.1 133 177-313 65-223 (243)
91 PF13181 TPR_8: Tetratricopept 79.9 2.2 4.7E-05 31.4 3.2 30 752-781 2-31 (34)
92 PRK14574 hmsH outer membrane p 79.9 38 0.00082 43.7 16.0 93 183-288 36-128 (822)
93 PF00515 TPR_1: Tetratricopept 79.7 3.8 8.2E-05 30.2 4.5 30 182-211 2-31 (34)
94 PF13525 YfiO: Outer membrane 79.7 37 0.00081 35.8 13.6 129 178-309 39-185 (203)
95 KOG1840|consensus 79.4 95 0.0021 37.9 18.3 242 177-424 195-458 (508)
96 PF12895 Apc3: Anaphase-promot 79.4 5.3 0.00011 35.7 6.1 58 183-244 27-84 (84)
97 KOG0548|consensus 79.4 19 0.00042 43.5 12.2 156 186-367 7-162 (539)
98 PRK11189 lipoprotein NlpI; Pro 78.0 39 0.00084 37.7 13.8 95 181-288 64-158 (296)
99 COG1802 GntR Transcriptional r 77.3 8.4 0.00018 41.3 8.0 66 376-443 17-82 (230)
100 PF13174 TPR_6: Tetratricopept 77.2 4 8.7E-05 29.4 3.9 30 182-211 1-30 (33)
101 PF07719 TPR_2: Tetratricopept 77.1 3.5 7.6E-05 30.0 3.6 30 752-781 2-31 (34)
102 TIGR02917 PEP_TPR_lipo putativ 77.1 1.9E+02 0.0042 35.6 43.1 99 177-288 121-219 (899)
103 KOG2003|consensus 75.6 1.7E+02 0.0038 35.1 18.0 112 164-288 506-618 (840)
104 PF13432 TPR_16: Tetratricopep 75.0 11 0.00024 31.6 6.6 56 756-814 2-57 (65)
105 PF13374 TPR_10: Tetratricopep 73.8 6.7 0.00014 29.6 4.5 30 182-211 3-32 (42)
106 PF00515 TPR_1: Tetratricopept 73.4 5 0.00011 29.6 3.6 30 752-781 2-31 (34)
107 KOG1127|consensus 73.3 73 0.0016 41.5 15.3 101 177-288 488-588 (1238)
108 cd05804 StaR_like StaR_like; a 72.2 35 0.00075 38.2 11.6 98 182-288 115-212 (355)
109 KOG1497|consensus 72.1 1.1E+02 0.0024 35.3 15.0 70 745-814 97-170 (399)
110 PF00392 GntR: Bacterial regul 72.1 14 0.0003 31.8 6.6 52 378-429 3-55 (64)
111 COG4649 Uncharacterized protei 71.9 87 0.0019 33.4 13.2 134 147-288 60-193 (221)
112 PF13428 TPR_14: Tetratricopep 71.7 7.9 0.00017 30.7 4.6 31 183-213 3-33 (44)
113 PRK15431 ferrous iron transpor 70.9 5.6 0.00012 36.5 3.9 44 388-431 6-49 (78)
114 KOG0551|consensus 70.8 32 0.0007 39.6 10.6 97 178-284 78-175 (390)
115 PF08279 HTH_11: HTH domain; 70.5 8.5 0.00018 31.8 4.7 49 385-436 1-50 (55)
116 COG1849 Uncharacterized protei 70.1 22 0.00048 33.5 7.6 57 151-207 4-67 (90)
117 PRK10803 tol-pal system protei 69.7 15 0.00032 40.9 7.7 86 727-815 159-244 (263)
118 PF13374 TPR_10: Tetratricopep 69.4 5.2 0.00011 30.3 3.0 30 752-781 3-32 (42)
119 smart00420 HTH_DEOR helix_turn 69.0 9.1 0.0002 30.5 4.5 39 392-430 8-46 (53)
120 PRK11447 cellulose synthase su 68.6 30 0.00064 46.1 11.5 93 183-288 605-697 (1157)
121 KOG1463|consensus 68.1 37 0.00081 39.2 10.4 147 758-910 216-408 (411)
122 PF14559 TPR_19: Tetratricopep 68.1 10 0.00022 31.9 4.9 52 192-246 2-53 (68)
123 KOG1861|consensus 67.7 2.1E+02 0.0046 34.6 16.6 63 344-413 429-493 (540)
124 PRK12370 invasion protein regu 67.2 40 0.00087 41.1 11.5 96 181-288 372-467 (553)
125 KOG0553|consensus 67.1 43 0.00093 38.1 10.6 82 149-250 116-198 (304)
126 KOG3677|consensus 67.0 11 0.00025 44.2 6.2 203 220-437 237-478 (525)
127 COG4235 Cytochrome c biogenesi 66.7 48 0.001 37.6 10.9 92 182-286 157-251 (287)
128 PRK02603 photosystem I assembl 66.1 21 0.00045 36.3 7.5 66 751-816 35-100 (172)
129 PLN03218 maturation of RBCL 1; 66.0 4.5E+02 0.0098 35.2 22.1 61 183-245 581-641 (1060)
130 PF13428 TPR_14: Tetratricopep 66.0 8.2 0.00018 30.6 3.6 33 752-784 2-34 (44)
131 PF00399 PIR: Yeast PIR protei 65.6 2 4.3E-05 28.7 -0.0 10 3-12 6-15 (18)
132 PF09743 DUF2042: Uncharacteri 65.5 40 0.00088 37.8 10.1 87 348-441 79-171 (272)
133 PF13525 YfiO: Outer membrane 65.1 28 0.00062 36.6 8.5 65 182-246 6-70 (203)
134 PF11817 Foie-gras_1: Foie gra 64.9 65 0.0014 35.3 11.5 86 156-241 153-241 (247)
135 PRK10049 pgaA outer membrane p 63.9 2.8E+02 0.0061 35.4 18.4 94 181-288 49-142 (765)
136 PF12862 Apc5: Anaphase-promot 63.1 29 0.00062 32.2 7.2 62 192-253 9-76 (94)
137 KOG2581|consensus 61.9 1.3E+02 0.0028 35.8 13.3 53 753-805 249-304 (493)
138 PRK09782 bacteriophage N4 rece 61.3 5.2E+02 0.011 34.4 36.8 185 181-395 44-241 (987)
139 KOG1126|consensus 61.1 62 0.0014 40.1 11.2 204 158-388 403-608 (638)
140 PF13371 TPR_9: Tetratricopept 60.3 29 0.00063 29.6 6.3 58 187-247 1-58 (73)
141 KOG4234|consensus 59.0 1.2E+02 0.0026 33.1 11.6 62 186-247 100-163 (271)
142 KOG0553|consensus 58.7 59 0.0013 37.0 9.8 89 187-288 87-175 (304)
143 PRK10049 pgaA outer membrane p 57.9 74 0.0016 40.5 11.8 95 181-288 359-453 (765)
144 PF13174 TPR_6: Tetratricopept 57.2 13 0.00027 26.8 3.0 30 752-781 1-30 (33)
145 PRK10434 srlR DNA-bindng trans 57.1 15 0.00032 40.5 4.9 46 384-429 5-50 (256)
146 KOG0543|consensus 56.1 55 0.0012 38.6 9.3 93 186-288 213-317 (397)
147 PRK10411 DNA-binding transcrip 56.0 63 0.0014 35.4 9.4 46 384-429 4-49 (240)
148 KOG1174|consensus 55.8 4.4E+02 0.0095 31.8 16.3 198 183-392 234-494 (564)
149 PRK11014 transcriptional repre 55.5 28 0.0006 34.8 6.1 62 383-444 10-71 (141)
150 KOG3081|consensus 55.2 3.6E+02 0.0079 30.6 15.7 149 151-321 82-260 (299)
151 cd07377 WHTH_GntR Winged helix 54.8 36 0.00078 28.4 5.9 52 378-429 4-56 (66)
152 TIGR00540 hemY_coli hemY prote 54.2 96 0.0021 36.2 11.2 93 183-287 120-212 (409)
153 PRK15174 Vi polysaccharide exp 53.9 78 0.0017 39.7 10.9 95 181-288 246-344 (656)
154 KOG1155|consensus 53.4 95 0.0021 37.4 10.6 105 177-287 428-532 (559)
155 COG4700 Uncharacterized protei 53.2 3.3E+02 0.0071 29.7 13.5 120 179-314 87-206 (251)
156 KOG2300|consensus 52.9 1.2E+02 0.0026 36.9 11.3 145 748-906 4-170 (629)
157 PF09986 DUF2225: Uncharacteri 52.9 33 0.00072 37.0 6.6 76 146-221 123-207 (214)
158 TIGR00540 hemY_coli hemY prote 52.8 4.4E+02 0.0094 30.8 19.6 183 187-382 159-381 (409)
159 PLN03081 pentatricopeptide (PP 52.6 3.5E+02 0.0076 33.9 16.4 91 183-288 362-452 (697)
160 KOG1155|consensus 52.3 87 0.0019 37.7 10.1 102 144-247 429-536 (559)
161 PRK12370 invasion protein regu 52.2 5.3E+02 0.011 31.6 27.9 96 180-288 337-432 (553)
162 PLN03077 Protein ECB2; Provisi 52.2 4.6E+02 0.0099 33.8 17.7 22 186-207 529-550 (857)
163 smart00028 TPR Tetratricopepti 52.1 22 0.00047 23.5 3.4 29 752-780 2-30 (34)
164 smart00028 TPR Tetratricopepti 52.1 25 0.00055 23.2 3.8 28 182-209 2-29 (34)
165 COG3063 PilF Tfp pilus assembl 52.1 1.4E+02 0.003 33.2 10.9 102 176-288 64-165 (250)
166 PRK04424 fatty acid biosynthes 51.7 15 0.00032 38.7 3.6 44 385-428 8-51 (185)
167 PF08784 RPA_C: Replication pr 51.7 17 0.00036 34.2 3.6 38 397-434 64-101 (102)
168 COG2976 Uncharacterized protei 51.3 2E+02 0.0044 31.1 11.8 116 156-288 70-185 (207)
169 COG1349 GlpR Transcriptional r 51.0 21 0.00045 39.4 4.7 46 384-429 5-50 (253)
170 PRK04841 transcriptional regul 50.9 2.3E+02 0.0049 36.4 14.7 104 180-288 530-638 (903)
171 PRK11534 DNA-binding transcrip 50.8 36 0.00078 36.2 6.4 64 376-441 8-71 (224)
172 PF13512 TPR_18: Tetratricopep 50.5 1.9E+02 0.0042 29.6 11.1 51 179-230 45-95 (142)
173 PF09986 DUF2225: Uncharacteri 50.4 47 0.001 35.9 7.2 78 717-794 124-210 (214)
174 PRK15359 type III secretion sy 50.3 58 0.0013 32.4 7.4 67 178-247 55-121 (144)
175 KOG1498|consensus 49.4 1.6E+02 0.0034 35.0 11.4 80 736-815 114-198 (439)
176 PRK09802 DNA-binding transcrip 48.9 23 0.0005 39.4 4.7 47 383-429 16-62 (269)
177 PLN03098 LPA1 LOW PSII ACCUMUL 48.8 57 0.0012 39.2 8.0 14 470-483 320-333 (453)
178 PRK15174 Vi polysaccharide exp 48.8 1.1E+02 0.0025 38.2 11.2 97 179-288 282-378 (656)
179 KOG2003|consensus 48.4 92 0.002 37.3 9.4 93 183-288 594-686 (840)
180 PRK11189 lipoprotein NlpI; Pro 48.3 1.5E+02 0.0032 33.2 11.0 95 180-288 97-191 (296)
181 COG1849 Uncharacterized protei 48.0 78 0.0017 30.0 7.1 75 721-805 4-85 (90)
182 PF09440 eIF3_N: eIF3 subunit 47.7 21 0.00046 35.9 3.8 44 142-191 90-133 (133)
183 PF13412 HTH_24: Winged helix- 47.6 36 0.00077 27.4 4.5 41 388-428 7-47 (48)
184 KOG3785|consensus 47.4 54 0.0012 38.2 7.2 70 172-244 48-117 (557)
185 KOG2002|consensus 47.3 6.2E+02 0.013 33.4 16.8 93 183-288 498-590 (1018)
186 PF12569 NARP1: NMDA receptor- 47.3 95 0.0021 38.0 9.9 68 746-816 189-256 (517)
187 cd05804 StaR_like StaR_like; a 47.2 58 0.0012 36.4 7.7 173 181-364 148-334 (355)
188 PRK10681 DNA-binding transcrip 46.9 21 0.00046 39.2 4.0 52 383-440 6-57 (252)
189 TIGR02812 fadR_gamma fatty aci 46.3 1.9E+02 0.004 31.0 11.1 64 377-442 8-72 (235)
190 PF03704 BTAD: Bacterial trans 46.0 1E+02 0.0023 30.1 8.4 67 180-249 61-127 (146)
191 PRK10906 DNA-binding transcrip 46.0 28 0.0006 38.4 4.8 46 384-429 5-50 (252)
192 PRK13509 transcriptional repre 45.9 29 0.00062 38.2 4.9 46 384-429 5-50 (251)
193 TIGR03338 phnR_burk phosphonat 45.5 52 0.0011 34.5 6.6 64 377-442 13-76 (212)
194 TIGR00985 3a0801s04tom mitocho 45.5 1.2E+02 0.0027 31.1 8.9 54 177-230 86-140 (148)
195 KOG2076|consensus 45.4 5.6E+02 0.012 33.4 16.0 93 183-288 175-267 (895)
196 COG1729 Uncharacterized protei 45.1 74 0.0016 35.6 7.8 78 165-246 165-243 (262)
197 KOG1585|consensus 44.4 5.2E+02 0.011 29.3 15.8 192 162-361 52-251 (308)
198 PF02064 MAS20: MAS20 protein 44.1 32 0.00069 34.2 4.3 79 146-224 24-106 (121)
199 KOG0396|consensus 43.9 3.6E+02 0.0077 31.8 13.0 124 153-286 87-215 (389)
200 TIGR02552 LcrH_SycD type III s 43.7 77 0.0017 30.1 6.9 64 181-247 51-114 (135)
201 PRK10225 DNA-binding transcrip 43.6 72 0.0016 34.7 7.5 65 377-443 11-76 (257)
202 PRK03837 transcriptional regul 42.5 60 0.0013 34.8 6.6 64 377-442 15-79 (241)
203 PF08631 SPO22: Meiosis protei 42.3 2.5E+02 0.0053 31.2 11.5 37 177-213 31-68 (278)
204 PF01984 dsDNA_bind: Double-st 42.2 7.9 0.00017 37.5 -0.2 52 382-433 31-82 (107)
205 PF10300 DUF3808: Protein of u 41.5 1.1E+02 0.0025 36.7 9.4 97 184-289 270-374 (468)
206 PF13371 TPR_9: Tetratricopept 41.4 40 0.00086 28.7 4.1 39 752-791 30-68 (73)
207 KOG1126|consensus 41.4 50 0.0011 40.9 6.2 95 182-289 354-448 (638)
208 smart00550 Zalpha Z-DNA-bindin 41.2 49 0.0011 29.2 4.6 43 388-430 10-54 (68)
209 PF14559 TPR_19: Tetratricopep 41.2 43 0.00093 28.1 4.3 52 762-816 2-53 (68)
210 PF01047 MarR: MarR family; I 41.0 68 0.0015 26.6 5.4 47 391-437 10-56 (59)
211 KOG1173|consensus 40.9 1.3E+02 0.0027 37.1 9.3 95 180-288 311-406 (611)
212 KOG0276|consensus 40.6 3.4E+02 0.0073 34.1 12.6 157 184-389 617-777 (794)
213 PLN03081 pentatricopeptide (PP 39.9 4.8E+02 0.01 32.7 14.8 57 184-246 262-318 (697)
214 PF13431 TPR_17: Tetratricopep 39.6 23 0.0005 26.9 2.0 23 180-202 12-34 (34)
215 PLN03088 SGT1, suppressor of 39.5 97 0.0021 35.8 8.1 63 182-247 37-99 (356)
216 KOG2076|consensus 39.4 2.3E+02 0.0049 36.8 11.4 102 174-287 407-508 (895)
217 PRK09782 bacteriophage N4 rece 38.7 1.8E+02 0.004 38.4 11.2 94 182-288 610-703 (987)
218 PF01022 HTH_5: Bacterial regu 38.3 83 0.0018 25.4 5.3 43 384-428 3-45 (47)
219 KOG3431|consensus 38.2 24 0.00053 34.9 2.4 53 381-433 38-90 (129)
220 COG4783 Putative Zn-dependent 38.2 2.7E+02 0.0059 33.8 11.4 111 146-256 338-464 (484)
221 TIGR03504 FimV_Cterm FimV C-te 38.0 34 0.00073 28.0 2.9 26 184-209 2-27 (44)
222 KOG4626|consensus 37.8 1.6E+02 0.0034 36.9 9.4 94 181-288 320-414 (966)
223 PF02082 Rrf2: Transcriptional 37.7 94 0.002 28.1 6.1 47 398-444 25-71 (83)
224 CHL00033 ycf3 photosystem I as 37.5 1.6E+02 0.0035 29.6 8.5 67 750-816 34-100 (168)
225 PF07721 TPR_4: Tetratricopept 37.2 44 0.00096 23.7 3.1 23 183-205 3-25 (26)
226 PF02064 MAS20: MAS20 protein 37.1 58 0.0013 32.3 4.9 56 739-794 51-106 (121)
227 PF14853 Fis1_TPR_C: Fis1 C-te 36.9 66 0.0014 27.3 4.5 38 181-218 1-38 (53)
228 TIGR03826 YvyF flagellar opero 36.7 35 0.00076 34.6 3.4 40 391-434 37-78 (137)
229 PRK15179 Vi polysaccharide bio 36.6 3.3E+02 0.0071 34.7 12.5 95 181-288 86-180 (694)
230 PRK04984 fatty acid metabolism 36.6 2.9E+02 0.0062 29.6 10.7 64 377-442 9-73 (239)
231 PF04703 FaeA: FaeA-like prote 36.5 55 0.0012 28.8 4.1 40 390-429 6-46 (62)
232 KOG2235|consensus 35.6 2.1E+02 0.0045 35.7 9.9 62 374-442 114-175 (776)
233 PRK10866 outer membrane biogen 35.4 1.3E+02 0.0028 33.0 7.8 64 184-247 35-98 (243)
234 PRK10747 putative protoheme IX 35.3 6.5E+02 0.014 29.4 14.1 91 186-288 123-213 (398)
235 PRK09464 pdhR transcriptional 34.5 88 0.0019 33.9 6.4 64 377-442 12-76 (254)
236 cd00090 HTH_ARSR Arsenical Res 34.2 1.7E+02 0.0037 24.3 6.9 38 399-436 21-58 (78)
237 KOG1156|consensus 34.2 1.1E+03 0.023 30.0 19.5 93 179-284 369-461 (700)
238 PF13518 HTH_28: Helix-turn-he 34.0 88 0.0019 25.1 4.8 43 385-431 2-44 (52)
239 smart00344 HTH_ASNC helix_turn 33.7 60 0.0013 30.4 4.3 48 387-434 6-56 (108)
240 PF12802 MarR_2: MarR family; 33.5 1.1E+02 0.0025 25.4 5.6 40 398-437 21-60 (62)
241 TIGR02844 spore_III_D sporulat 33.4 47 0.001 30.6 3.4 34 385-419 7-40 (80)
242 cd04750 Commd2 COMM_Domain con 33.4 1.2E+02 0.0026 31.5 6.8 85 62-168 3-89 (166)
243 PF13431 TPR_17: Tetratricopep 33.3 28 0.00061 26.4 1.7 21 752-772 14-34 (34)
244 PF10668 Phage_terminase: Phag 33.3 54 0.0012 28.8 3.5 37 385-421 9-45 (60)
245 PLN03098 LPA1 LOW PSII ACCUMUL 33.2 1.8E+02 0.0038 35.1 8.9 65 714-780 73-141 (453)
246 KOG4414|consensus 33.1 65 0.0014 33.1 4.5 74 342-419 80-153 (197)
247 COG2976 Uncharacterized protei 33.1 1.8E+02 0.004 31.5 8.1 70 724-793 132-203 (207)
248 PRK04841 transcriptional regul 32.9 2.6E+02 0.0055 35.9 11.1 105 182-288 492-599 (903)
249 PF11817 Foie-gras_1: Foie gra 32.8 2.4E+02 0.0053 30.8 9.4 84 726-811 153-241 (247)
250 KOG2072|consensus 32.3 5.5E+02 0.012 33.3 13.0 176 185-398 12-192 (988)
251 PRK11414 colanic acid/biofilm 32.3 94 0.002 33.0 6.0 54 377-430 13-66 (221)
252 KOG2002|consensus 32.2 2.2E+02 0.0047 37.3 9.8 96 182-288 271-368 (1018)
253 PRK15481 transcriptional regul 32.2 86 0.0019 36.7 6.2 63 377-441 7-70 (431)
254 PRK10857 DNA-binding transcrip 32.0 88 0.0019 32.5 5.5 60 385-444 12-71 (164)
255 PRK09990 DNA-binding transcrip 31.9 1.1E+02 0.0023 33.3 6.5 64 377-442 9-73 (251)
256 smart00419 HTH_CRP helix_turn_ 31.8 74 0.0016 24.9 4.0 32 398-429 8-39 (48)
257 KOG2796|consensus 31.8 8.3E+02 0.018 28.0 13.7 98 183-288 179-278 (366)
258 PF12862 Apc5: Anaphase-promot 31.7 2.7E+02 0.0058 25.7 8.2 34 179-212 39-72 (94)
259 PF04733 Coatomer_E: Coatomer 31.7 6.7E+02 0.014 28.3 12.9 55 185-247 106-160 (290)
260 PF04053 Coatomer_WDAD: Coatom 31.5 2.9E+02 0.0063 33.3 10.5 105 723-860 323-427 (443)
261 KOG1464|consensus 31.2 6.7E+02 0.014 28.7 12.2 30 864-893 381-410 (440)
262 PRK04239 hypothetical protein; 31.0 35 0.00076 33.4 2.3 54 381-434 35-88 (110)
263 KOG4234|consensus 30.8 1.6E+02 0.0034 32.2 7.2 69 755-823 99-170 (271)
264 PF10345 Cohesin_load: Cohesin 30.8 1E+03 0.022 29.6 15.5 107 174-286 94-203 (608)
265 smart00346 HTH_ICLR helix_turn 30.1 3.4E+02 0.0073 24.3 8.5 46 385-430 6-52 (91)
266 smart00418 HTH_ARSR helix_turn 30.1 1.4E+02 0.003 24.1 5.5 40 396-435 8-47 (66)
267 PF04010 DUF357: Protein of un 29.8 1.3E+02 0.0027 27.5 5.5 28 180-207 34-61 (75)
268 PF07721 TPR_4: Tetratricopept 29.3 64 0.0014 22.9 2.8 23 753-775 3-25 (26)
269 COG4783 Putative Zn-dependent 29.1 1.1E+03 0.025 28.7 17.9 171 180-389 305-477 (484)
270 PF04010 DUF357: Protein of un 29.0 1.3E+02 0.0028 27.5 5.4 26 751-776 35-60 (75)
271 PRK14574 hmsH outer membrane p 28.9 1.4E+03 0.031 29.8 17.2 127 143-288 36-162 (822)
272 PRK15363 pathogenicity island 28.2 2.9E+02 0.0064 28.7 8.5 71 176-249 64-134 (157)
273 KOG2911|consensus 28.1 7.7E+02 0.017 29.7 12.7 70 716-798 234-309 (439)
274 PF10345 Cohesin_load: Cohesin 27.9 3.7E+02 0.008 33.4 10.9 87 223-310 366-453 (608)
275 PRK11523 DNA-binding transcrip 27.8 1.3E+02 0.0029 32.6 6.4 64 377-442 10-74 (253)
276 PRK10747 putative protoheme IX 27.6 1E+03 0.022 27.7 17.2 60 187-249 159-218 (398)
277 PF01535 PPR: PPR repeat; Int 27.5 67 0.0015 22.5 2.8 27 754-780 3-29 (31)
278 KOG0276|consensus 27.3 2.3E+02 0.0051 35.3 8.5 83 749-860 664-746 (794)
279 TIGR00756 PPR pentatricopeptid 27.3 84 0.0018 22.2 3.3 29 754-782 3-31 (35)
280 PF12854 PPR_1: PPR repeat 27.2 74 0.0016 24.1 3.0 26 753-778 9-34 (34)
281 PRK10421 DNA-binding transcrip 27.1 1.4E+02 0.0031 32.3 6.5 65 377-443 4-69 (253)
282 COG4105 ComL DNA uptake lipopr 27.0 9.4E+02 0.02 27.1 13.2 112 176-288 66-193 (254)
283 KOG1156|consensus 27.0 3.6E+02 0.0078 33.9 10.1 66 749-817 369-434 (700)
284 KOG4555|consensus 26.8 5.2E+02 0.011 26.7 9.5 96 184-288 46-141 (175)
285 PF13041 PPR_2: PPR repeat fam 26.8 81 0.0018 25.3 3.4 33 753-785 5-37 (50)
286 PF01535 PPR: PPR repeat; Int 26.5 91 0.002 21.8 3.3 26 184-209 3-28 (31)
287 PF13463 HTH_27: Winged helix 26.4 2.4E+02 0.0052 23.8 6.5 49 389-437 8-57 (68)
288 PRK10370 formate-dependent nit 26.1 1.6E+02 0.0036 31.0 6.5 65 182-249 108-175 (198)
289 PHA02130 hypothetical protein 26.1 48 0.001 29.4 2.0 44 556-599 18-61 (81)
290 TIGR02010 IscR iron-sulfur clu 25.8 1.8E+02 0.0038 28.9 6.3 48 397-444 24-71 (135)
291 KOG0624|consensus 25.8 1.2E+03 0.025 27.8 14.0 101 178-288 103-215 (504)
292 TIGR00756 PPR pentatricopeptid 25.6 1.3E+02 0.0027 21.3 4.0 28 184-211 3-30 (35)
293 PF13512 TPR_18: Tetratricopep 25.5 3.3E+02 0.0072 27.9 8.2 65 183-247 12-76 (142)
294 PF12854 PPR_1: PPR repeat 25.4 87 0.0019 23.7 3.1 26 183-208 9-34 (34)
295 TIGR02787 codY_Gpos GTP-sensin 25.3 2.1E+02 0.0046 31.9 7.1 59 373-431 153-231 (251)
296 cd00092 HTH_CRP helix_turn_hel 25.1 1.1E+02 0.0024 25.7 4.1 34 397-430 24-57 (67)
297 PRK11920 rirA iron-responsive 24.4 2.5E+02 0.0053 28.7 7.2 50 395-444 21-70 (153)
298 COG2118 DNA-binding protein [G 24.0 62 0.0013 31.9 2.5 54 381-434 38-91 (116)
299 TIGR02944 suf_reg_Xantho FeS a 23.9 2.9E+02 0.0063 26.9 7.4 59 396-456 23-81 (130)
300 KOG1127|consensus 23.6 3.6E+02 0.0078 35.6 9.5 129 160-317 993-1122(1238)
301 KOG3785|consensus 23.6 1.7E+02 0.0036 34.4 6.2 74 742-818 48-121 (557)
302 PF13812 PPR_3: Pentatricopept 23.4 1.2E+02 0.0026 21.7 3.5 29 754-782 4-32 (34)
303 COG4259 Uncharacterized protei 23.2 1.6E+02 0.0035 28.7 5.0 67 728-795 50-116 (121)
304 PF13812 PPR_3: Pentatricopept 23.0 1.8E+02 0.0039 20.8 4.4 28 183-210 3-30 (34)
305 KOG1129|consensus 22.5 1.4E+02 0.0031 34.6 5.4 85 194-288 337-421 (478)
306 TIGR00985 3a0801s04tom mitocho 22.5 6.3E+02 0.014 26.2 9.5 49 747-795 86-135 (148)
307 PF13041 PPR_2: PPR repeat fam 22.3 1.5E+02 0.0033 23.7 4.3 32 183-214 5-36 (50)
308 KOG3060|consensus 22.2 5.6E+02 0.012 29.1 9.6 93 148-244 19-112 (289)
309 PLN03077 Protein ECB2; Provisi 21.7 9.2E+02 0.02 31.0 13.2 61 183-245 255-315 (857)
310 KOG3250|consensus 21.6 4.2E+02 0.0091 29.2 8.3 121 340-470 61-185 (258)
311 PF09339 HTH_IclR: IclR helix- 21.0 2.1E+02 0.0045 23.6 4.8 44 385-428 4-48 (52)
312 PF01865 PhoU_div: Protein of 20.7 2.1E+02 0.0045 30.3 6.1 79 340-425 26-104 (214)
313 PLN03218 maturation of RBCL 1; 20.4 2.2E+03 0.048 29.0 26.2 180 182-381 615-799 (1060)
314 smart00347 HTH_MARR helix_turn 20.4 5E+02 0.011 23.1 7.7 45 392-436 18-62 (101)
315 PF13384 HTH_23: Homeodomain-l 20.4 86 0.0019 25.3 2.4 40 384-426 6-45 (50)
316 PRK10153 DNA-binding transcrip 20.1 1.8E+02 0.0039 35.7 6.0 59 751-814 453-511 (517)
No 1
>KOG0686|consensus
Probab=100.00 E-value=4.2e-88 Score=738.68 Aligned_cols=414 Identities=55% Similarity=0.888 Sum_probs=390.0
Q ss_pred hhHHHHHhhhhhHHhhhhHHHHhhhh-hchhHHHHHHHHHHHh-hcChHHHHHHHH--HHHHHhhhhHHHHHHHHHhhhc
Q psy11733 30 TTFEKSLNVGKEYARKSNMLILRSAM-IKHNICVKISIQYVMQ-TYNVNLYIQLHR--KLSESLSSLKELFLVMFYLELY 105 (971)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ai~~~k~-~~nv~~Y~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 105 (971)
+|+|.|+..|.|..|+.|++|||+|| +++.+||+|||++||+ ||||++|+++|+ ++....
T Consensus 34 idie~yA~~Y~g~~~i~RllfIA~~cp~Lr~~Al~~Ai~~vk~~t~nv~ly~~l~~~~k~~~~L---------------- 97 (466)
T KOG0686|consen 34 IDIEAYAASYEGRNRILRLLFIARHCPDLRVEALRMAIDEVKEDTYNVDLYQELFNASKIQGEL---------------- 97 (466)
T ss_pred chHHHHHHhcccHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhcchh----------------
Confidence 68999999999999999999999999 9999999999999999 999999999999 443221
Q ss_pred cCCCcccccccccccccccCCCCCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy11733 106 YFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHD 185 (971)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~ 185 (971)
+.-|+..|.. | -+.+.+|.+|++...++...++++|+.|||.||+|+||||||+|++
T Consensus 98 --------------------~~~~~~~~~~--~-~e~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~ 154 (466)
T KOG0686|consen 98 --------------------GRAPFKNPQL--G-FEGYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALE 154 (466)
T ss_pred --------------------hcCCCCCccc--c-ccccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 1111112222 2 2468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk 265 (971)
|+|+||++||++++|+++|.|+|||||+.+|+|+||+++|+|+|+++||.||.++++||+++++... .-.+.+.+||+
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~--~~~q~v~~kl~ 232 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE--NLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh--hHHHhcCcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999984321 11456789999
Q ss_pred HHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHH
Q psy11733 266 VAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDIL 345 (971)
Q Consensus 266 ~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI 345 (971)
|+.||++|..|+|+.|+.+|+.+.+++++|+|+++|.|+++||+|||||||||.+||..|++|.+|+.|++.+|.++++|
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il 312 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREIL 312 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHc
Q psy11733 346 VQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILD 425 (971)
Q Consensus 346 ~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~d 425 (971)
.+||+++|..|+++|.+++++|++|+||+|||+.||+.||.|+++||+.||++++|+.||.+||+|+.++|++|.+||.+
T Consensus 313 ~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~sv~~le~~l~~LI~~ 392 (466)
T KOG0686|consen 313 FKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTSVAILESELLELILE 392 (466)
T ss_pred HHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeccc
Q psy11733 426 GQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVKDN 484 (971)
Q Consensus 426 grL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l~~~a~~lllR~~~l~a~l~v~~~ 484 (971)
|+|+||||+++|++++.+.|+++++|++++.+|+.+.+.++++++|+.++.+.+++++.
T Consensus 393 ~~i~~rIDs~~ki~~~~~~~~en~~fe~~~~~~~~~~~~~kal~lr~~~~~~~~ht~s~ 451 (466)
T KOG0686|consen 393 GKISGRIDSHNKILYARDADSENATFERVLPMGKRSQLEAKALLLRAALLKNKIHTKSL 451 (466)
T ss_pred cchheeeccccceeeecccccccchhhhcchhhHHHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986
No 2
>KOG0686|consensus
Probab=100.00 E-value=5e-66 Score=565.30 Aligned_cols=303 Identities=57% Similarity=0.956 Sum_probs=277.3
Q ss_pred ccHHHHhhcCchhhHHHHHHHHHhhCcccHHHHHHHHHHHHHh-ccchHHHHHHHH--HHHHhhhhHHHHHHHHHHhhhc
Q psy11733 599 QDLESYANSYTGLARLFRLIYVADHCPALRHEALRMAIQYVMQ-TYNVNLYIQLHR--KLSESLSSLKELFLVMFYLELY 675 (971)
Q Consensus 599 ~DLe~Y~~~Y~G~~ri~RL~fIa~~cp~L~~eAL~~Ai~~vk~-t~dv~~Y~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 675 (971)
+|+|+|+++|+|++||.||+|||+|||+|+++||+|||++||+ |+|+++|+++|+ ++..+++. .
T Consensus 34 idie~yA~~Y~g~~~i~RllfIA~~cp~Lr~~Al~~Ai~~vk~~t~nv~ly~~l~~~~k~~~~L~~-------------~ 100 (466)
T KOG0686|consen 34 IDIEAYAASYEGRNRILRLLFIARHCPDLRVEALRMAIDEVKEDTYNVDLYQELFNASKIQGELGR-------------A 100 (466)
T ss_pred chHHHHHHhcccHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhcchhhc-------------C
Confidence 8999999999999999999999999999999999999999998 999999999998 55433311 0
Q ss_pred cCCCCccccccccccccccCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy11733 676 YFPHPIMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHD 755 (971)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~ 755 (971)
. ++.|+ .| -+.+++|++|+++..++.+.++++|+.|||.||+|+||||||+|++
T Consensus 101 ~-------------------~~~~~------~~-~e~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~ 154 (466)
T KOG0686|consen 101 P-------------------FKNPQ------LG-FEGYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALE 154 (466)
T ss_pred C-------------------CCCcc------cc-ccccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 0 01111 11 1357899999999999999999999999999999999999999999
Q ss_pred HhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCC----------------
Q psy11733 756 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPD---------------- 819 (971)
Q Consensus 756 dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~rd---------------- 819 (971)
|+|+||..+|++++|+|+|.|+|||||+.+|+|+||+++|+|+|+.+||.||.+|+.||+++|+
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------------------------hh---------------------------hhhcchhhhhhhccchhHHHHHHH
Q psy11733 820 ---------------------------FA---------------------------EVIFSSGFKLFLELEPQLRDILVQ 845 (971)
Q Consensus 820 ---------------------------f~---------------------------~vi~s~~f~~~Le~~P~lr~li~s 845 (971)
|. .||.|.+|+.|+|++|.+|++|.+
T Consensus 235 agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~ 314 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFK 314 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHH
Confidence 00 136888899999999999999999
Q ss_pred hhcCChhHHHHHHHHH----------------------------------------HH---------HHHHHHhhhhcCc
Q psy11733 846 FYNSKYATCLNLLAQI----------------------------------------MA---------LENELMTLILDGQ 876 (971)
Q Consensus 846 fy~~~Y~~~~~~L~~i----------------------------------------ma---------ie~EL~~fI~~G~ 876 (971)
||+++|++||++|.++ || +|+||-++|.+|+
T Consensus 315 fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~sv~~le~~l~~LI~~~~ 394 (466)
T KOG0686|consen 315 FYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTSVAILESELLELILEGK 394 (466)
T ss_pred HhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcccHHHHHHHHHHHHHccc
Confidence 9999999999999752 22 9999999999999
Q ss_pred cceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccceeccCCCcchhHHHHHhhcccccCccCCCC
Q psy11733 877 IQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMQVDVHMEDNDNNEQEMIIVENASLSPTISRSDE 956 (971)
Q Consensus 877 L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~~~~lllR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (971)
|++|||+++|++++...|+|+++|+++.-.|+.+...++.++||.++ ++|+||+++.+|.|+
T Consensus 395 i~~rIDs~~ki~~~~~~~~en~~fe~~~~~~~~~~~~~kal~lr~~~------------------~~~~~ht~s~~~~g~ 456 (466)
T KOG0686|consen 395 ISGRIDSHNKILYARDADSENATFERVLPMGKRSQLEAKALLLRAAL------------------LKNKIHTKSLPREGP 456 (466)
T ss_pred hheeeccccceeeecccccccchhhhcchhhHHHHHHHHHHHHHHHH------------------HhccccCCCccccCC
Confidence 99999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CC
Q psy11733 957 NG 958 (971)
Q Consensus 957 ~~ 958 (971)
+|
T Consensus 457 s~ 458 (466)
T KOG0686|consen 457 SG 458 (466)
T ss_pred CC
Confidence 98
No 3
>KOG0687|consensus
Probab=100.00 E-value=8.5e-63 Score=527.42 Aligned_cols=322 Identities=23% Similarity=0.378 Sum_probs=316.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH
Q psy11733 142 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 221 (971)
Q Consensus 142 ~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~ 221 (971)
.+.+|+..++.|.+.|+.++++|+.++.++++|+|+.++|.++..+|+||+++||.++|++++.++.++.++.||+||+.
T Consensus 65 ~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred ceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCCh
Q psy11733 222 LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSP 301 (971)
Q Consensus 222 l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~ 301 (971)
|.+||++++.+|...|.+.++||+.+++.|+||+| +||+|+|.|+++|+.|+|+.||.+|+++ .++|++.|+++|
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR----rNRlKvY~Gly~msvR~Fk~Aa~Lfld~-vsTFtS~El~~Y 219 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER----RNRLKVYQGLYCMSVRNFKEAADLFLDS-VSTFTSYELMSY 219 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh----hhhHHHHHHHHHHHHHhHHHHHHHHHHH-cccccceecccH
Confidence 99999999999999999999999999999999999 7999999999999999999999999999 689999999999
Q ss_pred hHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHH-HHhcccccchHHhHHHH
Q psy11733 302 NNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQI-MDNLLLDMYIAPHVNTL 380 (971)
Q Consensus 302 ~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~-~~~LllD~yL~~Hv~~L 380 (971)
.+++.|+++|++.+++|.+||++|+++|++...++.-|.+++++.++|+|+|+.|+..|... ...+..|.||.||++++
T Consensus 220 ~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yy 299 (393)
T KOG0687|consen 220 ETFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYY 299 (393)
T ss_pred HHHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999655 88999999999999999
Q ss_pred HHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHH
Q psy11733 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKE 460 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~ 460 (971)
+++||.++|.|+++||++++|++||++||+|+++|+++|.+||.+|+|+||||.+||+|++++||.+|.+|+.+|++||.
T Consensus 300 vREMR~rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~ 379 (393)
T KOG0687|consen 300 VREMRRRVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDL 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy11733 461 YARKSNML 468 (971)
Q Consensus 461 l~~~a~~l 468 (971)
++||.+.+
T Consensus 380 LLnriQK~ 387 (393)
T KOG0687|consen 380 LLNRIQKL 387 (393)
T ss_pred HHHHHHHH
Confidence 99998876
No 4
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-50 Score=422.24 Aligned_cols=322 Identities=18% Similarity=0.304 Sum_probs=306.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH
Q psy11733 142 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 221 (971)
Q Consensus 142 ~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~ 221 (971)
...+|..+++.+-++|+.++++|++.|.+.++-.++.++-.++..+|+||+++||.+++.+...+.....++++-+||+.
T Consensus 76 ~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 76 VIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred heehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 47899999999999999999999999999999779999999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCCh
Q psy11733 222 LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSP 301 (971)
Q Consensus 222 l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~ 301 (971)
+.+||++++.+|-..|.+.++++..+++.++||+| +||+|+|.|++.|..|+|+.||.+|+++ .++|++.|++||
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR----rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~-l~tF~S~El~sY 230 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER----RNRYKVYKGIFKMMRRNFKEAAILLSDI-LPTFESSELISY 230 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh----hhhHHHHHHHHHHHHHhhHHHHHHHHHH-hccccccccccH
Confidence 99999999999999999999999999999999998 7999999999999999999999999999 789999999999
Q ss_pred hHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchH---HHHHHHHHHhCCHHHHHHHH-HHHHHhcccccchHHhH
Q psy11733 302 NNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQ---LRDILVQFYNSKYATCLNLL-AQIMDNLLLDMYIAPHV 377 (971)
Q Consensus 302 ~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~---lr~lI~aF~~~~Y~~~l~~L-~~~~~~LllD~yL~~Hv 377 (971)
.+++.|+++|++.+++|.++|++|+++|++..++.+... +..+++++|.|+|..+|..| ..+.+.|..|.||..|+
T Consensus 231 ~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~ 310 (412)
T COG5187 231 SRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHV 310 (412)
T ss_pred HHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHH
Confidence 999999999999999999999999999999999976543 67889999999999666555 46678999999999999
Q ss_pred HHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHH
Q psy11733 378 NTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNV 457 (971)
Q Consensus 378 ~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~ 457 (971)
+.|+++||.|+|.|.+++|+.++|++||++||+|++++++.|..||.+|+|+|+||.+||+|++++||.+|.+|+.++++
T Consensus 311 d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkq 390 (412)
T COG5187 311 DLFVREMRRRVYAQLLESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQ 390 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy11733 458 GKEYARKSNML 468 (971)
Q Consensus 458 gd~l~~~a~~l 468 (971)
|+.++++.+.-
T Consensus 391 Gd~ll~klqKy 401 (412)
T COG5187 391 GDDLLRKLQKY 401 (412)
T ss_pred chHHHHHHHHH
Confidence 99999876643
No 5
>KOG0687|consensus
Probab=100.00 E-value=3.7e-45 Score=392.08 Aligned_cols=207 Identities=22% Similarity=0.378 Sum_probs=197.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHH
Q psy11733 712 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 791 (971)
Q Consensus 712 ~~~~D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~ 791 (971)
.+.+|+.++++|.++|+.++++|+++++++++|+|+.++|.|+..+|+|||+|||+++|++++.++.++++++||+||++
T Consensus 65 ~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred ceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhc------------------------CCChhh-------------------------
Q psy11733 792 LNVIRVSVYLQNWSHVLSYVNKAEA------------------------TPDFAE------------------------- 822 (971)
Q Consensus 792 l~lIRV~if~~D~~~V~~~i~KA~~------------------------~rdf~~------------------------- 822 (971)
|++||+|+|++|...|.+.|+||+. +|||++
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 9999999999999999999999987 467764
Q ss_pred ------------------hhcchhhhhhhccchhHHHHHHHhhcCChhHHHHHHHHH-----------------------
Q psy11733 823 ------------------VIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQI----------------------- 861 (971)
Q Consensus 823 ------------------vi~s~~f~~~Le~~P~lr~li~sfy~~~Y~~~~~~L~~i----------------------- 861 (971)
||++|++..+|+..|.++++++|+|+|+|+.||..|..+
T Consensus 225 Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR 304 (393)
T KOG0687|consen 225 YTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMR 304 (393)
T ss_pred HHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHH
Confidence 368899999999999999999999999999999999420
Q ss_pred ------------------HH---------HHHHHHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHHH
Q psy11733 862 ------------------MA---------LENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKS 914 (971)
Q Consensus 862 ------------------ma---------ie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~~ 914 (971)
|| ||+||++||++|+|+||||+|||||+|||||.||++||.+||+||.++||+
T Consensus 305 ~rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~LLnri 384 (393)
T KOG0687|consen 305 RRVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDLLLNRI 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHHHHHHH
Confidence 44 999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy11733 915 NMLI 918 (971)
Q Consensus 915 ~~ll 918 (971)
||+-
T Consensus 385 QK~~ 388 (393)
T KOG0687|consen 385 QKLS 388 (393)
T ss_pred HHHH
Confidence 9974
No 6
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=100.00 E-value=9.4e-42 Score=349.58 Aligned_cols=174 Identities=52% Similarity=0.796 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q psy11733 146 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVI 225 (971)
Q Consensus 146 D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lI 225 (971)
|++|++.++++|++++++||.+|++|++|+||||||+|+.++|+||+++||+++|+++|.++|+||++++|++|||+++|
T Consensus 1 D~~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~i 80 (177)
T PF10602_consen 1 DEEWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVI 80 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCC---cccCCChh
Q psy11733 226 RVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCD---FPELLSPN 302 (971)
Q Consensus 226 rv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~---~~ells~~ 302 (971)
||+|+++||.+|.++++||+.+++.++||++ ++||+|+.||++|.+|+|+.||++|+++.+ +|+ ++|++||+
T Consensus 81 rv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~----~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~-t~~~~~~~el~s~~ 155 (177)
T PF10602_consen 81 RVAIFFGDWSHVEKYIEKAESLIEKGGDWER----RNRLKVYEGLANLAQRDFKEAAELFLDSLS-TFTSLQYTELISYN 155 (177)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHHHHHhchHHHHHHHHHccCc-CCCCCchhhhcCHH
Confidence 9999999999999999999999999988765 899999999999999999999999999954 444 59999999
Q ss_pred HHHHHHHHHhhhcCChHHHHHh
Q psy11733 303 NIATYGGLCALATFDRSELEKQ 324 (971)
Q Consensus 303 Dva~Y~~LcaLaS~dR~eLK~k 324 (971)
|||+|++||||+|++|++||+|
T Consensus 156 d~a~Y~~l~aLat~~R~eLk~K 177 (177)
T PF10602_consen 156 DFAIYGGLCALATLDRSELKKK 177 (177)
T ss_pred HHHHHHHHHHHHhCCHHHHccC
Confidence 9999999999999999999864
No 7
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=292.16 Aligned_cols=206 Identities=18% Similarity=0.270 Sum_probs=189.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHH
Q psy11733 712 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 791 (971)
Q Consensus 712 ~~~~D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~ 791 (971)
...+|..+++++-++|++++++|++.|.+.++.-|+.++-.++..+|+|||+|||.+++++...+...+.+++|.|||++
T Consensus 76 ~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 76 VIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred heehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 36899999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhc------------------------CCChhhh------------------------
Q psy11733 792 LNVIRVSVYLQNWSHVLSYVNKAEA------------------------TPDFAEV------------------------ 823 (971)
Q Consensus 792 l~lIRV~if~~D~~~V~~~i~KA~~------------------------~rdf~~v------------------------ 823 (971)
|+.||+|++++|...|...+++++. .|+|++|
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 9999999999999999999999976 2556542
Q ss_pred -------------------hcchhhhhhhccc---hhHHHHHHHhhcCChhHHHHHHHHH--------------------
Q psy11733 824 -------------------IFSSGFKLFLELE---PQLRDILVQFYNSKYATCLNLLAQI-------------------- 861 (971)
Q Consensus 824 -------------------i~s~~f~~~Le~~---P~lr~li~sfy~~~Y~~~~~~L~~i-------------------- 861 (971)
+++|+++.++... ..+..+++|+|.|+|+.+|..|..+
T Consensus 236 Ya~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvR 315 (412)
T COG5187 236 YAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVR 315 (412)
T ss_pred HHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 6899999999765 4466889999999999998888520
Q ss_pred ---------------------HH---------HHHHHHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHH
Q psy11733 862 ---------------------MA---------LENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYA 911 (971)
Q Consensus 862 ---------------------ma---------ie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~ 911 (971)
|| +|++|..||++|+|||+||+||||++|||||+||++|+.++|+||.++
T Consensus 316 EMRrrvYaQlLESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkqGd~ll 395 (412)
T COG5187 316 EMRRRVYAQLLESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQGDDLL 395 (412)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhcchHHH
Confidence 43 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy11733 912 RKSNML 917 (971)
Q Consensus 912 ~~~~~l 917 (971)
++.||-
T Consensus 396 ~klqKy 401 (412)
T COG5187 396 RKLQKY 401 (412)
T ss_pred HHHHHH
Confidence 999975
No 8
>KOG2758|consensus
Probab=99.97 E-value=2.8e-30 Score=276.83 Aligned_cols=311 Identities=14% Similarity=0.191 Sum_probs=247.0
Q ss_pred CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc-hhh
Q psy11733 143 PTLDPLLIETKNKKAA--MKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH-VVD 219 (971)
Q Consensus 143 ~~~D~~wie~~~~~n~--~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h-~id 219 (971)
...+|+.++.++.... ..++.|.+ ...++.+...+++++|+|.|+||+|+.|..+++..|..|..++. .++
T Consensus 95 ~le~Pd~~~~~~~~k~~~~~l~~L~e------~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 95 VLENPDLIAALRSDKDRVQNLQHLQE------HYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred HHcCHHHHHHHHhhhhHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 5678999999998877 78888876 46788999999999999999999999999999999999988876 899
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHH----HHHHhhccCHHHHHHHHhhccc--C--
Q psy11733 220 MCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAA----GLAELATRKYKTAARFFLQAHF--D-- 291 (971)
Q Consensus 220 m~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~----GL~~L~~r~yk~AA~~FLea~f--~-- 291 (971)
.+|+++...|.++||+++.+.+.|+++.+|...-....+.+++|.|..- .+++ +.+--.+-.+.|+-.+. .
T Consensus 169 alwGKlASEIL~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fn-hpkgrd~iid~fly~p~YLNaI 247 (432)
T KOG2758|consen 169 ALWGKLASEILTQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFN-HPKGRDTIIDMFLYQPPYLNAI 247 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhcc-CCChhhHHHHHHccCHHHHHHH
Confidence 9999999999999999999999999999997653222233333333211 1111 12223344444443210 0
Q ss_pred CCCcccCCChhHHHHHHHHHhhhcC--ChHHHHHhccCChhhhhhhccchH-HHHHHHHHHhCCH-----HHHHHHHHHH
Q psy11733 292 YCDFPELLSPNNIATYGGLCALATF--DRSELEKQVIFSSGFKLFLELEPQ-LRDILVQFYNSKY-----ATCLNLLAQI 363 (971)
Q Consensus 292 ~~~~~ells~~Dva~Y~~LcaLaS~--dR~eLK~kVlds~efr~~Le~eP~-lr~lI~aF~~~~Y-----~~~l~~L~~~ 363 (971)
...||+++ +|+..+.+.+. .|+.||+ +.+++++|.+ ++|+|+.|.+|-| ..++..|.+|
T Consensus 248 Qt~cPhll------RYLatAvvtnk~~rr~~lkd-------lvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eC 314 (432)
T KOG2758|consen 248 QTSCPHLL------RYLATAVVTNKRRRRNRLKD-------LVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLREC 314 (432)
T ss_pred HhhCHHHH------HHHHHHhhcchHhhHHHHHH-------HHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHH
Confidence 12366665 67777666653 2455554 5578887755 7888888776655 5789999999
Q ss_pred HHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 364 MDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 364 ~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
+.++.+|+||.+..+.|.+..|..+++.||+.|+||+++.+|..++|+.+++|+|++++|++.+|+||||+..|.|+|..
T Consensus 315 eeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~ 394 (432)
T KOG2758|consen 315 EEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGH 394 (432)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Q psy11733 444 QDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVK 482 (971)
Q Consensus 444 ~D~R~~~yq~alk~gd~l~~~a~~lllR~~~l~a~l~v~ 482 (971)
+ ..+.||++|+.+ +.+-+|+..+..+++.+
T Consensus 395 ~--~~s~~qQ~ie~t-------ksLS~rsq~la~~lek~ 424 (432)
T KOG2758|consen 395 P--TVSPHQQLIEKT-------KSLSFRSQNLAQQLEKK 424 (432)
T ss_pred C--CCCHHHHHHHhc-------cccchhHHHHHHHHHHH
Confidence 7 568999999975 55556666666666544
No 9
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.94 E-value=2.1e-27 Score=243.81 Aligned_cols=104 Identities=55% Similarity=0.854 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHH
Q psy11733 716 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVI 795 (971)
Q Consensus 716 D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lI 795 (971)
|++|+++++++|++++++||.+||+|++|+||||||+|+.++|+||+++||+++|+++|.++|+|||++||+|||||++|
T Consensus 1 D~~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~i 80 (177)
T PF10602_consen 1 DEEWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVI 80 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHhcCCC
Q psy11733 796 RVSVYLQNWSHVLSYVNKAEATPD 819 (971)
Q Consensus 796 RV~if~~D~~~V~~~i~KA~~~rd 819 (971)
|||||++||.+|.+||+||+.+++
T Consensus 81 rv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 81 RVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998543
No 10
>KOG1463|consensus
Probab=99.94 E-value=2e-26 Score=249.36 Aligned_cols=269 Identities=19% Similarity=0.271 Sum_probs=239.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC----hhHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSR-ARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN----NQAV 260 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r-~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r----~~~l 260 (971)
+|...|++.++|.+|+..... +|+. .++|--..++.|.++...-.|.++++.||++.+..+..-++ +|.+
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rEl-----KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLREL-----KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-----HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence 578899999999999998877 4665 36788888999999999999999999999988776654433 6899
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccC-CChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccc-
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPEL-LSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELE- 338 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~el-ls~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~e- 338 (971)
|+.|+..+|+.+...++|++|.++|+++ |+.|+.-.. ..+-...+|+.||.++--.+.+++ .++.++....|-...
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEA-fEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~-~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEA-FEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVA-ALLSAKLALKYAGRDI 285 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHH-HccccccCCcHHHHHHHHHHHHHHHHhcCHHHHH-HHHhhHHHHhccCcch
Confidence 9999999999999999999999999999 888875433 455567899999999988888886 577888888765432
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHH
Q psy11733 339 PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENE 418 (971)
Q Consensus 339 P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~e 418 (971)
..|+.+..+|-++....|...|.+++.+|..|++++.|...||+.+-.+.+...++|||+|.|+++|+..|++++.+|+.
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkK 365 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKK 365 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHH
Confidence 45888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHH
Q psy11733 419 LMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEY 461 (971)
Q Consensus 419 Lv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l 461 (971)
|++||.|.++.|.+|+.+|+|+.....+.+++|+.++++...+
T Consensus 366 LsqMILDKkf~G~LDQg~g~Liv~~e~~~d~~y~~aLetI~~m 408 (411)
T KOG1463|consen 366 LSQMILDKKFYGTLDQGEGCLIVFEEPPADNTYDAALETIQNM 408 (411)
T ss_pred HHHHHHHHHhhcccccCCCeEEEeCCCCcchHHHHHHHHHHhc
Confidence 9999999999999999999999998888999999999987654
No 11
>KOG1464|consensus
Probab=99.94 E-value=2e-25 Score=235.88 Aligned_cols=279 Identities=19% Similarity=0.309 Sum_probs=238.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC---------CchhhHHHHHHHHHHHhhcHHHH
Q psy11733 167 DLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG---------KHVVDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 167 eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~---------~h~idm~l~lIrv~I~~~dw~~V 237 (971)
.|+++||... .-..+.+||++|+++|+|..-.|.+.++...|.+. .+.++++-.-|.+.....|-..+
T Consensus 134 ALkdAKNeRL---WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkL 210 (440)
T KOG1464|consen 134 ALKDAKNERL---WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKL 210 (440)
T ss_pred HHHhhhccee---eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHH
Confidence 4677887654 24567899999999999999999999999999654 33455666667777777888888
Q ss_pred HHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH--HHHHHHHHhhhc
Q psy11733 238 LSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN--IATYGGLCALAT 315 (971)
Q Consensus 238 ~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D--va~Y~~LcaLaS 315 (971)
+....++-.+-...+ +|.+++-++.|+|.++|..|.|.+|...|+++ |. +|.|..||.. ..+|++|+.|..
T Consensus 211 K~lYeqalhiKSAIP----HPlImGvIRECGGKMHlreg~fe~AhTDFFEA-FK--NYDEsGspRRttCLKYLVLANMLm 283 (440)
T KOG1464|consen 211 KALYEQALHIKSAIP----HPLIMGVIRECGGKMHLREGEFEKAHTDFFEA-FK--NYDESGSPRRTTCLKYLVLANMLM 283 (440)
T ss_pred HHHHHHHHHhhccCC----chHHHhHHHHcCCccccccchHHHHHhHHHHH-Hh--cccccCCcchhHHHHHHHHHHHHH
Confidence 888887766655555 58999999999999999999999999999999 55 6778888875 799999999986
Q ss_pred CChHHHHHhccCChhhhhhhccchH---HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHh
Q psy11733 316 FDRSELEKQVIFSSGFKLFLELEPQ---LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQY 392 (971)
Q Consensus 316 ~dR~eLK~kVlds~efr~~Le~eP~---lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQY 392 (971)
-+ ++ +++|+++.++|.+ +|+ |..++.+|.+.+..+|..+|...+..++.|+|+..|+..|+++||+++++..
T Consensus 284 kS--~i--NPFDsQEAKPyKN-dPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkL 358 (440)
T KOG1464|consen 284 KS--GI--NPFDSQEAKPYKN-DPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKL 358 (440)
T ss_pred Hc--CC--CCCcccccCCCCC-CHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23 6899999999986 687 6889999999999999999999999999999999999999999999999999
Q ss_pred ccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcc-hHHHHHHHHHHH
Q psy11733 393 FSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRS-TTFEKSLNVGKE 460 (971)
Q Consensus 393 l~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~-~~yq~alk~gd~ 460 (971)
++||..|.|..+++.+++++.+++..||.+|.|.+|+||||.+|+.|...+..... ..|..+-++...
T Consensus 359 IkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~~al~kW~~q 427 (440)
T KOG1464|consen 359 IKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLYKALDKWNNQ 427 (440)
T ss_pred hccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987654322 235555555433
No 12
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.1e-23 Score=217.34 Aligned_cols=283 Identities=18% Similarity=0.260 Sum_probs=241.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC----ChhHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSR-ARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD----NNQAV 260 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r-~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~----r~~~l 260 (971)
++.-.||+.|.|.+|+....- +++. .++|--.+++.|.++....-|...++.|+++.+..+...+ ++|.+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~El-----Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHEL-----KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH-----HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 578899999999999988765 3444 2456666777777777777777788888877665544322 36889
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccC-CChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccc-
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPEL-LSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELE- 338 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~el-ls~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~e- 338 (971)
++.|...+|+.+...++|++|.++|+++ ++.|+.-.. .-+-...+|+.|..++--.|.|+| .|+.++...+.....
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea-~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk-~vl~~K~t~~~y~~r~ 282 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEA-LEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVK-AVLRNKNTLKHYDDRM 282 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHH-HhccccccchHHHHHHHHHHHHHHHHHhhHHHHH-HHHccchhHhhhhhhh
Confidence 9999999999999999999999999999 777753221 122246799999999998899987 588888887755432
Q ss_pred -hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHH
Q psy11733 339 -PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALEN 417 (971)
Q Consensus 339 -P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~ 417 (971)
..|+.+..+|-|+....|-+.|+.+.+++..|.|+..|..+||+.+-.+.+...++||++|.++++|+.+|.++..+|.
T Consensus 283 I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEg 362 (421)
T COG5159 283 IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEG 362 (421)
T ss_pred HHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHH
Confidence 4588888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11733 418 ELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMI 475 (971)
Q Consensus 418 eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l~~~a~~lllR~~~l 475 (971)
.|++||.|.-+.|..|+.+|.++.....+.+.+|..++++.+.+...+..++-++.++
T Consensus 363 KLsqMILDKifyG~LDqg~gcLivy~ep~qd~tyd~ale~v~~l~~vVd~l~ekas~l 420 (421)
T COG5159 363 KLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNTYDEALEQVEALDCVVDSLYEKASAL 420 (421)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEeCCccccchHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 9999999999999999999999999888899999999999999998888887766543
No 13
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.61 E-value=3.9e-15 Score=137.86 Aligned_cols=104 Identities=27% Similarity=0.430 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHH
Q psy11733 339 PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENE 418 (971)
Q Consensus 339 P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~e 418 (971)
|++.+++.+|..++|..|.+.|+.+...+..|.++..|++.+.+.+|.+++.+++.||++|+++.||+.|+++.+++|.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 78999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 419 LMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 419 Lv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
|++||.+|.|+|+||+.+|+|+..
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~ 104 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFS 104 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-
T ss_pred HHHHHHCCCEEEEEECCCCEEEec
Confidence 999999999999999999999875
No 14
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.27 E-value=1.5e-11 Score=111.84 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcc
Q psy11733 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRS 448 (971)
Q Consensus 375 ~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~ 448 (971)
+|++.+++.+|.+++.||++||++|+++.||+.|+++.+++|.+|+++|.+|.|+|+||+.+|+|+..++++|.
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~ 74 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR 74 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999887764
No 15
>smart00753 PAM PCI/PINT associated module.
Probab=99.27 E-value=1.5e-11 Score=111.84 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=71.2
Q ss_pred HhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcc
Q psy11733 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRS 448 (971)
Q Consensus 375 ~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~ 448 (971)
+|++.+++.+|.+++.||++||++|+++.||+.|+++.+++|.+|+++|.+|.|+|+||+.+|+|+..++++|.
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~ 74 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR 74 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999887764
No 16
>KOG2908|consensus
Probab=98.92 E-value=4.2e-07 Score=100.54 Aligned_cols=264 Identities=15% Similarity=0.139 Sum_probs=205.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhh---cCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHH
Q psy11733 190 HYLDCGDLSNALKCYSRARDYC---TNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKV 266 (971)
Q Consensus 190 ~y~~iGDl~~Alk~y~r~Rdyc---ts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~ 266 (971)
+.-+++|..+|++.+.++.+.. ..+.-++-+...+.|+-+..+|...+.+-+...++.+|...+- .+.+++..-.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v--~~~Vh~~fY~ 161 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV--TSNVHSSFYS 161 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC--ChhhhhhHHH
Confidence 4456889999999999987664 3444567777788888889999999999999999988876542 2457788878
Q ss_pred HHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChh--HHHHHHHHHhhhcC---ChHHHHHhccCChhhhhhhcc-chH
Q psy11733 267 AAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPN--NIATYGGLCALATF---DRSELEKQVIFSSGFKLFLEL-EPQ 340 (971)
Q Consensus 267 ~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~--Dva~Y~~LcaLaS~---dR~eLK~kVlds~efr~~Le~-eP~ 340 (971)
.+..++=..|+|..+...-|.- ....+..++-..+ |.|+-++++||..- +=.+| +.-|-|....+. ..+
T Consensus 162 lssqYyk~~~d~a~yYr~~L~Y-L~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGEL----L~HPilesL~gT~~eW 236 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYYRHALLY-LGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGEL----LAHPILESLKGTNREW 236 (380)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-hccccccccCHHHHHHHHHHHHHHHHhccccccHHHH----HhhHHHHHhcCCcHHH
Confidence 8888888888887666654432 1111233333344 78999999999872 22333 233445555543 366
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccc----cceecHHhHHHHhCCChHHHH
Q psy11733 341 LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSP----YLSADLNKMSVAFNTTIQALE 416 (971)
Q Consensus 341 lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~P----YssV~L~~MA~aFgvsvd~lE 416 (971)
+.+++.+|-.++...|++.-... -.=|-|..|.+.+.+.||..|++..+-. -+.|+.+.+|++-.+|.+++|
T Consensus 237 L~dll~Afn~Gdl~~f~~l~~~~----~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE 312 (380)
T KOG2908|consen 237 LKDLLIAFNSGDLKRFESLKGVW----GKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVE 312 (380)
T ss_pred HHHHHHHhccCCHHHHHHHHHHh----ccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHH
Confidence 99999999999999988755443 3367899999999999999999876543 578999999999999999999
Q ss_pred HHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHHHHH
Q psy11733 417 NELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARK 464 (971)
Q Consensus 417 ~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l~~~ 464 (971)
--+++.+.-|-|.|.||.++|+|++...-+|.-.-++..++++.+...
T Consensus 313 ~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~W 360 (380)
T KOG2908|consen 313 LLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDEW 360 (380)
T ss_pred HHHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHHHHHHH
Confidence 999999999999999999999999998888998899999998777643
No 17
>KOG1498|consensus
Probab=98.63 E-value=7.4e-05 Score=84.50 Aligned_cols=355 Identities=15% Similarity=0.173 Sum_probs=218.6
Q ss_pred hHHHHHhhhhhHHhhhhHHHHhhhhhchhHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccCCCc
Q psy11733 31 TFEKSLNVGKEYARKSNMLILRSAMIKHNICVKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHP 110 (971)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~Ai~~~k~~~nv~~Y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (971)
+++..++.-=.+-+..| +++.+.--...|..-.+.+....|.+.-.+.+..|..--+.||...-.|..--.-|-+
T Consensus 27 ~~~~~ie~Ll~~EkqtR---~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~-- 101 (439)
T KOG1498|consen 27 DLEAAIEELLNLEKQTR---LASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYID-- 101 (439)
T ss_pred hHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--
Confidence 55555555444444444 3555533333444444555667777777776666655433455555555332222311
Q ss_pred ccccccccccccccCCCCCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHH
Q psy11733 111 IMENQLNFSFYLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGH--DDLG 188 (971)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~--~dLg 188 (971)
+. ++...--. |-.-|+.-.++-|=.+|-++. ..|+
T Consensus 102 -----------------------~~-----~d~~~k~~---------------li~tLr~VtegkIyvEvERarlTk~L~ 138 (439)
T KOG1498|consen 102 -----------------------GT-----PDLETKIK---------------LIETLRTVTEGKIYVEVERARLTKMLA 138 (439)
T ss_pred -----------------------CC-----CCchhHHH---------------HHHHHHHhhcCceEEeehHHHHHHHHH
Confidence 00 01111122 333455555666644544443 3589
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhh---cCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHH
Q psy11733 189 DHYLDCGDLSNALKCYSRARDYC---TNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265 (971)
Q Consensus 189 ~~y~~iGDl~~Alk~y~r~Rdyc---ts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk 265 (971)
+.+-.+||..+|...+-..-.-+ ..-+-++...+..+|+++..+||-.+.-...|...-.-..++ ..--||+
T Consensus 139 ~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~-----~~~lKlk 213 (439)
T KOG1498|consen 139 KIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPD-----VQELKLK 213 (439)
T ss_pred HHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCcc-----HHHHHHH
Confidence 99999999999998875532221 112346788999999999999999998777776432221221 1124666
Q ss_pred HHHHHH--HhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHH-----HHhhhcCChHHHHHhccCChhhhhhhccc
Q psy11733 266 VAAGLA--ELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGG-----LCALATFDRSELEKQVIFSSGFKLFLELE 338 (971)
Q Consensus 266 ~~~GL~--~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~-----LcaLaS~dR~eLK~kVlds~efr~~Le~e 338 (971)
-|.-+. .++.+.|-.+.++.=.. .++. .+-+-..=..+++ .|.||.++ .+|..++.+..--+=++..
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yrai-y~t~---~vk~d~~kw~~vL~~iv~f~~LAp~d--neQsdll~~is~dKkL~e~ 287 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAI-YDTG---NVKEDPEKWIEVLRSIVSFCVLAPHD--NEQSDLLARISNDKKLSEL 287 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHH-hccc---ccccChhhhhhhhhhheeEEeecCCC--cHHHHHHHHHhcccccccC
Confidence 666553 34677888888876543 2222 1111011112222 35566555 2344444433333445557
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccc--hHHhHHHHHHHHHHHHHHHhcc----ccceecHHhHHHHhCCCh
Q psy11733 339 PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMY--IAPHVNTLYTQIRNRALIQYFS----PYLSADLNKMSVAFNTTI 412 (971)
Q Consensus 339 P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~y--L~~Hv~~L~~~IR~kaliQYl~----PYssV~L~~MA~aFgvsv 412 (971)
|...+++..|.+...-.+-..-+.+.+.+..+.| -..+.+.-.+.++.|+++.=++ =|++|++..||.-++.|+
T Consensus 288 p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ 367 (439)
T KOG1498|consen 288 PDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPV 367 (439)
T ss_pred ccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCH
Confidence 9999999999999988887777778887777633 3344555555555554443332 399999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 413 QALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 413 d~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
++.|.-|+.|+..|.+.||||..+|++.-..+
T Consensus 368 ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~ 399 (439)
T KOG1498|consen 368 EEMEKFLSDLVVTGTIYAKIDRPSGIINFQKV 399 (439)
T ss_pred HHHHHHHHHHHhccceEEEecCCCceEEEEec
Confidence 99999999999999999999999999998876
No 18
>KOG2581|consensus
Probab=98.37 E-value=3.1e-05 Score=87.66 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=141.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH
Q psy11733 224 VIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN 303 (971)
Q Consensus 224 lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D 303 (971)
++|..+..+-+..+.+.++|+. .++... +. -.+|.--|.|...+-+.+|..|.++|+.+.-....-.-+.--..
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~-~pe~~s----nn-e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~ 288 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV-YPEAAS----NN-EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQ 288 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc-Cccccc----cH-HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHH
Confidence 3667777777777777777653 233222 11 35778889999999999999999999997532222112233345
Q ss_pred HHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHH
Q psy11733 304 IATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383 (971)
Q Consensus 304 va~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~ 383 (971)
|-+..++..|...+=+|. .++.-|..++-|. |+ -++-.+--.++.+.|-+.|+.+.+.+..| +.-.++-.
T Consensus 289 v~k~~ivv~ll~geiPer--s~F~Qp~~~ksL~--~Y-f~Lt~AVr~gdlkkF~~~leq~k~~f~~D-----~ty~LivR 358 (493)
T KOG2581|consen 289 VNKLMIVVELLLGEIPER--SVFRQPGMRKSLR--PY-FKLTQAVRLGDLKKFNETLEQFKDKFQAD-----GTYTLIVR 358 (493)
T ss_pred HHHHHHHHHHHcCCCcch--hhhcCccHHHHHH--HH-HHHHHHHHHhhHHHHHHHHHHHHHHHhhC-----CcchHHHH
Confidence 777888888877653332 2444444433332 22 23445555789999999999998776665 44455556
Q ss_pred HHHHHHH----HhccccceecHHhHHHHhCCC-hHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 384 IRNRALI----QYFSPYLSADLNKMSVAFNTT-IQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 384 IR~kali----QYl~PYssV~L~~MA~aFgvs-vd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
+|..+|. +.=-+||+|++..+|+.+|++ ++++|=-+.+.|+||-|+|+||..+|.+.+.
T Consensus 359 LR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~sk 422 (493)
T KOG2581|consen 359 LRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSK 422 (493)
T ss_pred HHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCceehh
Confidence 6666554 444579999999999999995 5569999999999999999999999977664
No 19
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=9.4e-05 Score=81.12 Aligned_cols=278 Identities=16% Similarity=0.199 Sum_probs=167.2
Q ss_pred HHHHHhhccch---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhh-cCCCchhhHHHHHHHHHHHhhcHHHHHHH
Q psy11733 167 DLKNYKSNSIK---ESIRRGHDDLGDHYLDCGDLSNALKCYSRAR--DYC-TNGKHVVDMCLNVIRVSVYLQNWSHVLSY 240 (971)
Q Consensus 167 eLk~yk~NliK---eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~R--dyc-ts~~h~idm~l~lIrv~I~~~dw~~V~~~ 240 (971)
-|+.-.+|-|= |-+|- -.+|.+.+-.+||...|...+-..- .|. ...+-++...+..+|+++..+||..+..+
T Consensus 115 tlr~VtEgkIFvEvERari-T~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~ 193 (439)
T COG5071 115 TLRTVTEGKIFVEVERARL-TQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTY 193 (439)
T ss_pred HHHHHhcCceEEehhHHHH-HHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34445555552 22333 4579999999999999998764321 111 11234677889999999999999999999
Q ss_pred HHHHhccCcccCCCCChhHHHHHHHHHHHH--HHhhccCHHHHHHHHhhcccCC-------CCcccCCChhHHHHHHHHH
Q psy11733 241 VNKAEATPDFAEGKDNNQAVFTKLKVAAGL--AELATRKYKTAARFFLQAHFDY-------CDFPELLSPNNIATYGGLC 311 (971)
Q Consensus 241 v~KAk~~id~~~d~~r~~~l~~kLk~~~GL--~~L~~r~yk~AA~~FLea~f~~-------~~~~ells~~Dva~Y~~Lc 311 (971)
..|...-.-..++. + --||+-|.=+ ..|++|.|-.++.++-+. ..+ -...+++|- ++. +|
T Consensus 194 ~kKI~KK~Fe~~d~---~--slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~v-Y~t~~~~~d~Akwk~VLS~--~v~---F~ 262 (439)
T COG5071 194 TKKINKKFFEKEDV---Q--SLKLKYYELKVRIGLHDRAYLDVCKYYRAV-YDTAVVQEDPAKWKEVLSN--VVC---FA 262 (439)
T ss_pred HHHHHHHHhccccH---H--HHHHHHHHHhheeecccHHHHHHHHHHHHH-HHHHHhccCcccccchhhc--cee---eE
Confidence 88886533222221 1 2356666554 456788999999776553 111 112233321 111 11
Q ss_pred hhhcCChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccc-hH-----HhHHHHHHHHH
Q psy11733 312 ALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMY-IA-----PHVNTLYTQIR 385 (971)
Q Consensus 312 aLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~y-L~-----~Hv~~L~~~IR 385 (971)
-|.+.+ .++..++.-.+--.=+..+|...+++..|.-..+-.--..=..+.+.+..|.| +. .|.+.|...+-
T Consensus 263 iLtpy~--neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~~faF~~e~~~~~w~DL~krvi 340 (439)
T COG5071 263 LLTPYD--NEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRSNVFAFNDEKGEKRWSDLRKRVI 340 (439)
T ss_pred Eecccc--cHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhhhhhhccchhhhhHHHHHHHHH
Confidence 122221 11222211100001122345566666666555444333333445566666633 32 45666665554
Q ss_pred HHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHH
Q psy11733 386 NRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEY 461 (971)
Q Consensus 386 ~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l 461 (971)
.-.+.-.-+=||+|++..+...+.+|++++|+.++.|.-.|-+.|||+...|+|.-..+ ....+..-+++++.
T Consensus 341 EHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~---~n~~~~lneW~~NV 413 (439)
T COG5071 341 EHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKS---QNVQEQLNEWGSNV 413 (439)
T ss_pred HhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEeecc---ccHHHHHHHhcccH
Confidence 43333333339999999999999999999999999999999999999999999999775 23445555555443
No 20
>KOG1497|consensus
Probab=97.82 E-value=0.00091 Score=74.22 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----hcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCC
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDY----CTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdy----cts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
-+--.-+.||..|.+-|++.+|...+.-.--. -.+.+.++..|+.+-++.+..+|-..+..+++|+--.....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc---
Confidence 34444568999999999999999887543211 12335567788888888888899999999999986554322
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH---HHHHHHHHhh---hcCChHHHHHhccCC
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN---IATYGGLCAL---ATFDRSELEKQVIFS 328 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D---va~Y~~LcaL---aS~dR~eLK~kVlds 328 (971)
.++.++-..|+|.+=..=..|+|-+||...++.. +.+++.-.+ ...=.+.|.| ++--|+.+-..++..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels-----~~ki~~e~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkd 251 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS-----QRKIVDESERLEALKKALQCTLLASAGPQRSRMLATLFKD 251 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcchHHHHHHHHHhHhheeecCCChHHHHHHHHHhcC
Confidence 2567888889998888888999999999999863 223332221 1122222333 332344333333222
Q ss_pred hhhhhhhccchHHHHHHHHHHhCC------HHHHHHHHHHHHHh------cccccchHHhHHHHHHHHHHHHHHHhcccc
Q psy11733 329 SGFKLFLELEPQLRDILVQFYNSK------YATCLNLLAQIMDN------LLLDMYIAPHVNTLYTQIRNRALIQYFSPY 396 (971)
Q Consensus 329 ~efr~~Le~eP~lr~lI~aF~~~~------Y~~~l~~L~~~~~~------LllD~yL~~Hv~~L~~~IR~kaliQYl~PY 396 (971)
+..++. | .-.++..+|-.+ ...|...|.-...- --+|..+..| .+.-.=+-|
T Consensus 252 er~~~l----~-~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssil~ra~~Eh-----------Nlls~Skly 315 (399)
T KOG1497|consen 252 ERCQKL----P-AYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSILDRAVIEH-----------NLLSASKLY 315 (399)
T ss_pred cccccc----c-chHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchhhhhHHHHH-----------hHHHHHHHH
Confidence 211110 1 112333333222 22333333322211 1233333333 222222337
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
..++.+.+++-|+++.+..|+-..+||..||++|-||+.+|+|+-.+
T Consensus 316 ~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~ 362 (399)
T KOG1497|consen 316 NNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFED 362 (399)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecc
Confidence 88899999999999999999999999999999999999999999875
No 21
>KOG2582|consensus
Probab=97.67 E-value=0.0023 Score=72.23 Aligned_cols=289 Identities=11% Similarity=0.154 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT-NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct-s~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
-+.-.-.+++++..+.++-...+....++.++-. ++++.-.+...++.+++..+++..+..++.---.-+-. .+...+
T Consensus 100 ~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~-~n~h~~ 178 (422)
T KOG2582|consen 100 IFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICK-ANPHLD 178 (422)
T ss_pred HHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhc-cCCCCC
Confidence 3444456778888866655555555555555543 33355566777888888889998887665421111100 000012
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhcc-cCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhh-
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQAH-FDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFL- 335 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~-f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~L- 335 (971)
|...-..--|+|..+++.++|+.|--.|..+. ..+++-.++. -+..=+|..+.-|.+..-.+|-+ -.|+.+.++.
T Consensus 179 ~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~h-lEaYkkylLvsLI~~GK~~ql~k--~ts~~~~r~~K 255 (422)
T KOG2582|consen 179 PKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIH-LEAYKKYLLVSLILTGKVFQLPK--NTSQNAGRFFK 255 (422)
T ss_pred HHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhhhcCceeeccc--cchhhhHHhcc
Confidence 22222223478889999999998887776642 1111111110 11123455444444432222211 1234444444
Q ss_pred ccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHH--HhCCChH
Q psy11733 336 ELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSV--AFNTTIQ 413 (971)
Q Consensus 336 e~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~--aFgvsvd 413 (971)
...|.+.++...|.++.-.+......+..+.+..|-=.. -+......+-.+-|..+-+-|.+++|+.||+ .++. .+
T Consensus 256 ~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~-l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~-~q 333 (422)
T KOG2582|consen 256 PMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG-LAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLAS-AQ 333 (422)
T ss_pred cCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-hH
Confidence 345789999999999998887777788888888886553 3556677777788888999999999999999 4444 46
Q ss_pred HHHHHHHHHHHcCceeEEEcCCCCEEEEc-c--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc
Q psy11733 414 ALENELMTLILDGQIQARIDSHNKILYAK-Q--QDQRSTTFEKSLNVGKEYARKSNMLILRSAMIKHNICVKD 483 (971)
Q Consensus 414 ~lE~eLv~LI~dgrL~ARIDsvngiL~~~-~--~D~R~~~yq~alk~gd~l~~~a~~lllR~~~l~a~l~v~~ 483 (971)
++|+++.+||.+|++.++|| |.|.-. . ++...++++.-+.....+. -+..-+.+.|.+++
T Consensus 334 evek~Ilqmie~~~i~a~iN---G~v~f~~n~e~~~SpeM~~nk~~~~~~L~-------e~l~~~e~si~l~s 396 (422)
T KOG2582|consen 334 EVEKYILQMIEDGEIFASIN---GMVFFTDNPEKYNSPEMHENKIDLCIQLI-------EALKAMEESIRLNS 396 (422)
T ss_pred HHHHHHHHHhccCceEEEec---ceEEEecCcccCCCHHHHhhHHHHHHHHH-------HHHHhcchheeeCc
Confidence 79999999999999999999 755543 2 3445566775444443333 34444455554443
No 22
>KOG1076|consensus
Probab=97.47 E-value=0.017 Score=69.65 Aligned_cols=200 Identities=18% Similarity=0.323 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCC------------------C-ccc------CCChh-----HH--
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYC------------------D-FPE------LLSPN-----NI-- 304 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~------------------~-~~e------lls~~-----Dv-- 304 (971)
.+.+.||.-|.-||..+.+|--++|-.++.+.. ++. + -.+ .++|- ++
T Consensus 525 tQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~-st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlE 603 (843)
T KOG1076|consen 525 TQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQ-STGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLE 603 (843)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHH
Confidence 467889999999999999999999999887742 111 0 000 01111 11
Q ss_pred HHHHHHHhhh-------cCChHHHHHhccCChhhhhhhcc--------chH-HHH----HHHHHHhCCHHHHHHHHHHHH
Q psy11733 305 ATYGGLCALA-------TFDRSELEKQVIFSSGFKLFLEL--------EPQ-LRD----ILVQFYNSKYATCLNLLAQIM 364 (971)
Q Consensus 305 a~Y~~LcaLa-------S~dR~eLK~kVlds~efr~~Le~--------eP~-lr~----lI~aF~~~~Y~~~l~~L~~~~ 364 (971)
++|++ |||+ +.. .+-+.++ -|..|+..|+. -|+ +|+ +-.+...+++..|++.+...-
T Consensus 604 cVyLt-caMLlEIP~MAA~~-~d~Rrr~-iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~ 680 (843)
T KOG1076|consen 604 CVYLT-CAMLLEIPYMAAHE-SDARRRM-ISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNI 680 (843)
T ss_pred HHHHH-HHHHHhhhHHhhhh-hhhhccc-ccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Confidence 46765 6653 221 1223333 36777777653 133 444 456789999999999555422
Q ss_pred H--hcccccchHHhHHHHHHHHHHHHHHHhccc----cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCE
Q psy11733 365 D--NLLLDMYIAPHVNTLYTQIRNRALIQYFSP----YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKI 438 (971)
Q Consensus 365 ~--~LllD~yL~~Hv~~L~~~IR~kaliQYl~P----YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngi 438 (971)
. .|+-+ --.-.+-+.+.|+.-.+..||-. |.||+|..+|+.|.+|+..+-.-|++||.+..|.|..|..+++
T Consensus 681 KvW~Lfpn--~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~ 758 (843)
T KOG1076|consen 681 KVWDLFPN--ADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQC 758 (843)
T ss_pred hHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcce
Confidence 2 22221 12334567778888888887765 6789999999999999999999999999999999999999999
Q ss_pred EEEccCCCcchHHHHHHHHHHHHHH
Q psy11733 439 LYAKQQDQRSTTFEKSLNVGKEYAR 463 (971)
Q Consensus 439 L~~~~~D~R~~~yq~alk~gd~l~~ 463 (971)
|++.+ ++-+....-+++..+.+..
T Consensus 759 iv~hr-vE~srlq~La~qL~eKl~~ 782 (843)
T KOG1076|consen 759 IVMHR-VEPSRLQSLAVQLSEKLAI 782 (843)
T ss_pred EEEee-ccchHHHHHHHHHHHHHHH
Confidence 99988 5666777777777666553
No 23
>KOG2753|consensus
Probab=97.39 E-value=0.0074 Score=67.46 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=113.9
Q ss_pred hccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHH-HhccCChhhhhhhccchHHHHHHHHHHhCC
Q psy11733 274 ATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELE-KQVIFSSGFKLFLELEPQLRDILVQFYNSK 352 (971)
Q Consensus 274 ~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK-~kVlds~efr~~Le~eP~lr~lI~aF~~~~ 352 (971)
..+.-+.+.+.|.+- +.+|+...+-.+.+=|+=.+..++..- +-.. +.+++=|- .++||.++ +.+++.=|...+
T Consensus 177 ~~k~~~~s~kvmt~l-Lgtyt~dnas~AredA~rcV~~av~dP--~~F~fD~Ll~L~p-V~qLE~d~-i~qLL~IF~s~~ 251 (378)
T KOG2753|consen 177 DNKSVDESSKVMTEL-LGTYTEDNASEAREDAMRCVVEAVKDP--KIFLFDHLLTLPP-VKQLEGDL-IHQLLKIFVSGK 251 (378)
T ss_pred hcchhhhHHHHHHHH-HHHhcccchhHHHHHHHHHHHHHHcCC--ceeccchhccCch-HHHhccch-HHHHHHHHHhcc
Confidence 334444555555443 445555554555556666666666531 1000 01222232 34566555 888999999988
Q ss_pred HHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEE
Q psy11733 353 YATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARI 432 (971)
Q Consensus 353 Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARI 432 (971)
...+.+--+....-+..=-+ .| +..+..||..-+.+.-.|=..|+.+.|++.+.+..+++|-|+++-|+.+-+.|||
T Consensus 252 L~aYveF~~~N~~Fvqs~gl--~~-E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~ki 328 (378)
T KOG2753|consen 252 LDAYVEFVAANSGFVQSQGL--VH-EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKI 328 (378)
T ss_pred hHHHHHHHHhChHHHHHhcc--cH-HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhH
Confidence 77766655544332211111 12 3789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEccCCCc
Q psy11733 433 DSHNKILYAKQQDQR 447 (971)
Q Consensus 433 DsvngiL~~~~~D~R 447 (971)
|+.+++|+..+.-.|
T Consensus 329 dq~~~~viVs~~~hR 343 (378)
T KOG2753|consen 329 DQMNRTVIVSSSTHR 343 (378)
T ss_pred HhhcceEEeehhhhh
Confidence 999999998765433
No 24
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=97.17 E-value=0.00094 Score=61.72 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=47.2
Q ss_pred hhHHHHHHHhhcCChhHHHHHHHHH-------------------------------------------------HHHHHH
Q psy11733 837 PQLRDILVQFYNSKYATCLNLLAQI-------------------------------------------------MALENE 867 (971)
Q Consensus 837 P~lr~li~sfy~~~Y~~~~~~L~~i-------------------------------------------------maie~E 867 (971)
|++.+++.+|..++|..|.+.|+.. ..+|..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 8899999999999999999888630 139999
Q ss_pred HHhhhhcCccceeeccCCCeEEec
Q psy11733 868 LMTLILDGQIQARIDSHNKILYAK 891 (971)
Q Consensus 868 L~~fI~~G~L~arID~vngvl~t~ 891 (971)
|+++|.+|.|+|+||.++|+|+-+
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~ 104 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFS 104 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-
T ss_pred HHHHHHCCCEEEEEECCCCEEEec
Confidence 999999999999999999999865
No 25
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.69 E-value=0.081 Score=58.55 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhH--HHHH-HHHHHHh-hcHHHHHHHHHHHhccCcccCC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDM--CLNV-IRVSVYL-QNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm--~l~l-Irv~I~~-~dw~~V~~~v~KAk~~id~~~d 253 (971)
...-..+.+.|..|-+. +.++|+++|.++.+..+..+..-.. ++.. -++.-.. +++..+.++..+|-.+.+..+.
T Consensus 72 ~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 72 FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455677777777666 9999999999987765544443332 2222 2222233 6899999999999888765431
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC--ChhHHHHHHHHHhhhcCChHHHHHhccCChhh
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELL--SPNNIATYGGLCALATFDRSELEKQVIFSSGF 331 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell--s~~Dva~Y~~LcaLaS~dR~eLK~kVlds~ef 331 (971)
+...+....-.|-.+...++|..|.+.|-+.. ..+.-..++ +..+..+-.+||-|+..|-..-+.. +
T Consensus 151 ----~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~-~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~------~ 219 (282)
T PF14938_consen 151 ----PHSAAECLLKAADLYARLGRYEEAIEIYEEVA-KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA------L 219 (282)
T ss_dssp ----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH------H
T ss_pred ----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH------H
Confidence 22234444444555778899999999997753 222223333 3445667789999998875444322 2
Q ss_pred hhhhccch---------HHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHH
Q psy11733 332 KLFLELEP---------QLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNT 379 (971)
Q Consensus 332 r~~Le~eP---------~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~ 379 (971)
..|.+..| -+.++|.+|-+++-..|-+.+.++...-.+|.+...-+-.
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~ 276 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLK 276 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHH
Confidence 22222222 2788999999999999999999999999999987654433
No 26
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.84 E-value=0.21 Score=49.49 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
....-.++.+.+|+.+++.||+++|.+.|..+.+...++.-.--..+.+-++.+..++|..+++.+.... + ..|
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~--~~~- 116 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---D--EAF- 116 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---C--cch-
Confidence 3345678899999999999999999999999888764443333356677888889999999998886521 1 122
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+......|-.++..|++..|...|-.+
T Consensus 117 -----~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 117 -----KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3455678899999999999999887543
No 27
>KOG2758|consensus
Probab=95.56 E-value=2 Score=48.69 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 746 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH-VVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 746 ikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh-~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
+..+--+.....|.|.+.+|.+..|..+.=--|-.|..+.. -+...-..+---|...||++...-+.|.+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455567889999999999999999988777888877765 777788888888899999999999988877
No 28
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=95.36 E-value=0.033 Score=50.62 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcCccceeeccCCCeEEecCCCchh
Q psy11733 863 ALENELMTLILDGQIQARIDSHNKILYAKQQDQRS 897 (971)
Q Consensus 863 aie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~ 897 (971)
.+|..|+++|.+|.|+|+||..+|+|...++++|.
T Consensus 40 ~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~ 74 (88)
T smart00088 40 EVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR 74 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh
Confidence 49999999999999999999999999999999885
No 29
>smart00753 PAM PCI/PINT associated module.
Probab=95.36 E-value=0.033 Score=50.62 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcCccceeeccCCCeEEecCCCchh
Q psy11733 863 ALENELMTLILDGQIQARIDSHNKILYAKQQDQRS 897 (971)
Q Consensus 863 aie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~ 897 (971)
.+|..|+++|.+|.|+|+||..+|+|...++++|.
T Consensus 40 ~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~ 74 (88)
T smart00753 40 EVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR 74 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh
Confidence 49999999999999999999999999999999885
No 30
>KOG2688|consensus
Probab=95.04 E-value=0.61 Score=54.20 Aligned_cols=271 Identities=15% Similarity=0.076 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC-------ch
Q psy11733 145 LDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK-------HV 217 (971)
Q Consensus 145 ~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~-------h~ 217 (971)
-|..|+...--.....+-+|.......-... .....--+++|.+...+.+..|.+.. .+
T Consensus 94 ~~~~w~~~~l~rv~~~l~~la~~~~~~~~~~--------------~s~~~~~le~~s~~i~~~f~~cl~d~~~~~~~~kk 159 (394)
T KOG2688|consen 94 NDENWILPNLYRVCKDLRYLAINADCALLSF--------------SSLPNQLLEAASRTISRLFSSCLSDRRADLEESKK 159 (394)
T ss_pred cccchHHHHHHHHHHHHHHHhhhhHHhhcCc--------------ccCchHHHHHHHHHHHHHHHHHhCccccccccchh
Confidence 4568888877777777777665432222110 11111126788888888888886542 22
Q ss_pred h-hHHH--HHHHHHHHhhcHHHHHHHHHHHhccC-cccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCC
Q psy11733 218 V-DMCL--NVIRVSVYLQNWSHVLSYVNKAEATP-DFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYC 293 (971)
Q Consensus 218 i-dm~l--~lIrv~I~~~dw~~V~~~v~KAk~~i-d~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~ 293 (971)
+ -+++ .+.++..-.+.. +..+++.||-... ....+|...+.+ ..+=+-|...|...||..|...+..+ |..+
T Consensus 160 ~~~~~i~n~lf~Iyfri~~~-~L~k~l~ra~~~~~~~~~~~~l~~~v--~y~YylGr~a~~~~d~~~A~~~L~~a-f~~c 235 (394)
T KOG2688|consen 160 VAMLYIVNQLFQIYFRIEKL-LLCKNLIRAFDQSGSDISDFPLAQLV--VYHYYLGRYAMFESDFLNAFLQLNEA-FRLC 235 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhH-HHhHHHHHHhhccccchhhcccccce--eeeeeeeeehhhhhhHHHHHHHHHHH-HHhC
Confidence 2 2222 223344333443 4455555553322 111122211211 12235678889999999999999887 4433
Q ss_pred CcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccch--HHHHHHHHHHhCCHHHHHHHHHHHHHh-cccc
Q psy11733 294 DFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEP--QLRDILVQFYNSKYATCLNLLAQIMDN-LLLD 370 (971)
Q Consensus 294 ~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP--~lr~lI~aF~~~~Y~~~l~~L~~~~~~-LllD 370 (971)
-..-+-.-.-+.+|.+-+++.... ...+.+++..+ .+..++.+.-.+++..+-..|+..+.- ++.-
T Consensus 236 p~~~~~n~~~iliylip~~~llg~-----------~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~g 304 (394)
T KOG2688|consen 236 PDLLLKNKRLILIYLIPTGLLLGR-----------IPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSG 304 (394)
T ss_pred cHHHHhhhhhHHHHHhHHHHHhcc-----------CcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhc
Confidence 211111233478999988887533 12334555554 577888899999999999999988743 3444
Q ss_pred cchH--HhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCC------ChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 371 MYIA--PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNT------TIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 371 ~yL~--~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgv------svd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
+|+- ..---.|+++-.|++.=.. -=+.++++..-.++.. +.+++|--|+++|-.|+|.|-|+.....++..
T Consensus 305 i~l~l~~l~lv~yrnL~kkv~~~~~-~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~s 383 (394)
T KOG2688|consen 305 IYLTLEKLPLVVYRNLFKKVIQLWG-KTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFS 383 (394)
T ss_pred cHHHhhhhhHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEe
Confidence 5542 2222445555555554332 2267788888777743 35899999999999999999999999988876
Q ss_pred cCC
Q psy11733 443 QQD 445 (971)
Q Consensus 443 ~~D 445 (971)
+.+
T Consensus 384 K~~ 386 (394)
T KOG2688|consen 384 KKD 386 (394)
T ss_pred cCC
Confidence 554
No 31
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=95.03 E-value=0.054 Score=54.11 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHH
Q psy11733 341 LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELM 420 (971)
Q Consensus 341 lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv 420 (971)
+..+...+.+|+|..|...+... .-...+.+.+..|.+.||.+++.-.=..|++|+++.+|+.+|++.+++++.+.
T Consensus 44 i~~l~~~L~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~el~~~~~ 119 (143)
T PF10075_consen 44 IWSLGQALWEGDYSKFWQALRSN----PWSPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEELEKFIK 119 (143)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHHHHHHHH
Confidence 44567788999999999877653 12347788899999999999999999999999999999999999665555555
Q ss_pred H
Q psy11733 421 T 421 (971)
Q Consensus 421 ~ 421 (971)
+
T Consensus 120 ~ 120 (143)
T PF10075_consen 120 S 120 (143)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.88 E-value=0.33 Score=40.57 Aligned_cols=93 Identities=25% Similarity=0.281 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+++.+|..++..|++++|.+.+.++........ ........+....++|..+...+.++-...... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN----------A 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------h
Confidence 467899999999999999999999877654322 455566666777799999998888876542211 1
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|..++..|++..|...|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23455666788899999999888765
No 33
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.82 E-value=0.4 Score=44.23 Aligned_cols=99 Identities=8% Similarity=-0.022 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..+.+.|++++|.+.|.++...........+..+.+..+....++|..+...+.++...-..... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-------AP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-------cc
Confidence 57889999999999999999999988766544445677888888888999999999999988654211110 11
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|..+...+++..|...|-..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 22345566677899999999888765
No 34
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.77 E-value=0.28 Score=57.34 Aligned_cols=190 Identities=15% Similarity=0.257 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhccc-----C----
Q psy11733 221 CLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHF-----D---- 291 (971)
Q Consensus 221 ~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f-----~---- 291 (971)
+.+++||.+++||+..+++.+.-..- ...+=..+.+..+-.+-=+-|.++|..|+|.+|.+.|-.+-. .
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl--~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~ 202 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDL--NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH 202 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCc--ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46899999999999998876664321 111101122333334445889999999999999999987521 1
Q ss_pred --CCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Q psy11733 292 --YCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLL 369 (971)
Q Consensus 292 --~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~Lll 369 (971)
.+.+..+.-.+| =+|..|+-..++....+-+.| ..-+. ..+.+=......++...|.+......|.+..
T Consensus 203 ~~~~q~d~i~K~~e-qMyaLlAic~~l~p~~lde~i------~~~lk--eky~ek~~kmq~gd~~~f~elF~~acPKFIs 273 (404)
T PF10255_consen 203 QRSYQYDQINKKNE-QMYALLAICLSLCPQRLDESI------SSQLK--EKYGEKMEKMQRGDEEAFEELFSFACPKFIS 273 (404)
T ss_pred cccchhhHHHhHHH-HHHHHHHHHHHhCCCCCCHHH------HHHHH--HHHHHHHHHHHccCHHHHHHHHHhhCCCccC
Confidence 011222222222 133322211222221111111 11111 1133344445556666666666655554322
Q ss_pred ----------------ccchHHhHHHHHHHHHHH----HHHHhccccceecHHhHHHHhCCChHHHHHHHHHH
Q psy11733 370 ----------------DMYIAPHVNTLYTQIRNR----ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTL 422 (971)
Q Consensus 370 ----------------D~yL~~Hv~~L~~~IR~k----aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~L 422 (971)
|++ ..|++-|.++++.+ .+..|++=|++++++.+|.-++++++.+-.+|..+
T Consensus 274 p~~pp~~~~~~~~~~~e~~-~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll~~ 345 (404)
T PF10255_consen 274 PVSPPDYDGPSQNKNKEPY-RRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLLCF 345 (404)
T ss_pred CCCCCCcccccchhhhhHH-HHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 333 23566666666554 68899999999999999999999999776666543
No 35
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.15 E-value=3.1 Score=46.06 Aligned_cols=175 Identities=14% Similarity=0.154 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHH
Q psy11733 162 EKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDC-GDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 162 e~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~i-GDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V 237 (971)
+-++.-+.-|..+.--...-+.+..+|+.|.+. ||++.|+++|.++.++....+.. .++...+..+.+..++|..+
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 345556666766655566677899999999999 99999999999988877544433 35566778888999999999
Q ss_pred HHHHHHHhcc-CcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC-ChhHHHHHHHHHhhhc
Q psy11733 238 LSYVNKAEAT-PDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELL-SPNNIATYGGLCALAT 315 (971)
Q Consensus 238 ~~~v~KAk~~-id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell-s~~Dva~Y~~LcaLaS 315 (971)
.+.+.+.-.. ++.... ... ..+.-...+|.+|..+++-.|-..|=... . ..|... |.+--....++-|.=.
T Consensus 175 ~~~~e~~~~~~l~~~l~---~~~-~~~~~l~a~l~~L~~~D~v~A~~~~~~~~-~--~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLL---KYS-AKEYFLKAILCHLAMGDYVAARKALERYC-S--QDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHTCCCHCTT---GHH-HHHHHHHHHHHHHHTT-HHHHHHHHHHHG-T--TSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccccc---chh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hCCCCCCcHHHHHHHHHHHHHHh
Confidence 9999887543 222210 111 22344567899999999987776665431 1 012222 2222345555666656
Q ss_pred CChHHHHHhccCChhhhhhhccchHHHHHHH
Q psy11733 316 FDRSELEKQVIFSSGFKLFLELEPQLRDILV 346 (971)
Q Consensus 316 ~dR~eLK~kVlds~efr~~Le~eP~lr~lI~ 346 (971)
.|-..+.+-| .+|-.+..++|+...++.
T Consensus 248 ~D~e~f~~av---~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 248 GDVEAFTEAV---AEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp T-CCCHHHHC---HHHTTSS---HHHHHHHH
T ss_pred CCHHHHHHHH---HHHcccCccHHHHHHHHH
Confidence 6665565544 245555556677665543
No 36
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.83 E-value=0.32 Score=42.61 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC--Cc--hhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG--KH--VVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~--~h--~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
+++-+++..+|..|...|++++|+++|.++.+.+... .+ ++....++-.+....|++..+.+++.++-++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3566789999999999999999999999987776322 22 3455556666677889999999999988643
No 37
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=93.44 E-value=4.9 Score=46.50 Aligned_cols=237 Identities=15% Similarity=0.114 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCCch-------h--hHHHHH-HHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh-HHHHH
Q psy11733 195 GDLSNALKCYSRARDYCTNGKHV-------V--DMCLNV-IRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ-AVFTK 263 (971)
Q Consensus 195 GDl~~Alk~y~r~Rdycts~~h~-------i--dm~l~l-Irv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~-~l~~k 263 (971)
-.++++.+...|+...|.+...- + -+..++ ..+.+-+++..... ++-||-...+ +.|-..-+ .-.--
T Consensus 144 d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~-n~lka~~~vs-~~Di~~~~~sq~v~ 221 (413)
T COG5600 144 DNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCE-NFLKASKEVS-MPDISEYQKSQVVV 221 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhccccc-ccccchhhhcceee
Confidence 35788888899998888654322 1 111122 33444456665554 4555544322 22211100 00123
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH--HHHHHHHHhhhcCChHHHHHhccCChhhhhhhccch--
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN--IATYGGLCALATFDRSELEKQVIFSSGFKLFLELEP-- 339 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D--va~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP-- 339 (971)
..-|-|.+++.+.+|+.|.-.|.++ |. .|++++..+. ++.|.+-++|....-. -++.+++..|
T Consensus 222 f~YYLG~~~l~~en~heA~~~L~~a-Fl--~c~~l~~~n~~rIl~~~ipt~Llv~~~~----------Ptk~~L~r~~~~ 288 (413)
T COG5600 222 FHYYLGIYYLLNENFHEAFLHLNEA-FL--QCPWLITRNRKRILPYYIPTSLLVNKFP----------PTKDLLERFKRC 288 (413)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH-HH--hChhhhhcchheehhHHhhHHHHhCCCC----------CchHHHHhcccc
Confidence 3458999999999999999998887 33 3666665553 6777777777763221 3455666655
Q ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhc-ccccch--HHhHH-HHHHHHHHHHHHHhccccc-eecHHhHHHHhCCC--
Q psy11733 340 -QLRDILVQFYNSKYATCLNLLAQIMDNL-LLDMYI--APHVN-TLYTQIRNRALIQYFSPYL-SADLNKMSVAFNTT-- 411 (971)
Q Consensus 340 -~lr~lI~aF~~~~Y~~~l~~L~~~~~~L-llD~yL--~~Hv~-~L~~~IR~kaliQYl~PYs-sV~L~~MA~aFgvs-- 411 (971)
.+.-++.+.-.+++..|-..|+..+.-+ ..-+|+ -.|.+ -+++++-.|...--...=. .+++-..+.++..+
T Consensus 289 s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn 368 (413)
T COG5600 289 SVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDN 368 (413)
T ss_pred chhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchHHHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCc
Confidence 3556777888999999999999876432 222333 23332 2233333343332222211 34555666666443
Q ss_pred ---hHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCC
Q psy11733 412 ---IQALENELMTLILDGQIQARIDSHNKILYAKQQDQ 446 (971)
Q Consensus 412 ---vd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~ 446 (971)
.+.+|--|+.+|..|.|.|-|=....+++-.+.|+
T Consensus 369 ~~~~~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 369 FHSFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred ccChHHHHHHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 57899999999999999999999998888776543
No 38
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=93.25 E-value=0.14 Score=53.93 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=42.8
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..+++|+.-.+.|.|..+|..||++.+.+.+-|-.|..+|+|.|.||-..+-|+....
T Consensus 102 ~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~e 159 (188)
T PF09756_consen 102 QEFINYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEE 159 (188)
T ss_dssp HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----
T ss_pred HHHHHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHH
Confidence 3467799999999999999999999999999999999999999999998888887653
No 39
>KOG0548|consensus
Probab=92.07 E-value=7.1 Score=46.94 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHH
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKL 264 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kL 264 (971)
...|.-+++-|||.+|++.|+++...-++ +++ .+-|.-.+.+-++++..+++...++.++ .+.| .+-
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~--lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~-------~kg 428 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRDPE-DAR--LYSNRAACYLKLGEYPEALKDAKKCIEL---DPNF-------IKA 428 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhH--HHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchH-------HHH
Confidence 34599999999999999999997665432 222 2335555667788999998886666544 3333 233
Q ss_pred HHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH--HHHHHHHHhhh---cCChHHHHHhccCChhhhhhhccch
Q psy11733 265 KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN--IATYGGLCALA---TFDRSELEKQVIFSSGFKLFLELEP 339 (971)
Q Consensus 265 k~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D--va~Y~~LcaLa---S~dR~eLK~kVlds~efr~~Le~eP 339 (971)
....|.++-..++|..|.+.|-++- . .+|++ +..-..=|..+ ..+..+++.+++..|+++.++. .|
T Consensus 429 y~RKg~al~~mk~ydkAleay~eal-e-------~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~-d~ 499 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEAL-E-------LDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQ-DP 499 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-h-------cCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHc-CH
Confidence 3456888889999999999999873 2 11222 22223335554 3456788888888888888874 57
Q ss_pred HHHHHHH
Q psy11733 340 QLRDILV 346 (971)
Q Consensus 340 ~lr~lI~ 346 (971)
-++-++.
T Consensus 500 ~m~~~l~ 506 (539)
T KOG0548|consen 500 AMRQILE 506 (539)
T ss_pred HHHHHHH
Confidence 7764443
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.07 E-value=2 Score=41.17 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..++..|++.+|...+.++....+. ..++...+-.+....++|..+...+.++..... .+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~-------- 84 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DD-------- 84 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC--------
Confidence 45778999999999999999999988776543 345666666677778999999998888755421 11
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..++..|+|..|...|-.+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233456778888999999999988765
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.77 E-value=16 Score=36.80 Aligned_cols=93 Identities=19% Similarity=0.065 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+..+|..|...|++++|.+.+.++.+..+ . .......+..+....|++..+.+.+.++-...... .
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~ 99 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP--D-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------G 99 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------H
Confidence 344556666666666666666665544321 1 12333444445555566666666666554432110 1
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|..++..|+|..|...|-.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 12233344555666666666665554
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.48 E-value=3.8 Score=41.32 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.+.|.++...... ..+...++..+....|++..+.+.+.++........
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 133 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-------- 133 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--------
Confidence 467888999999999999999999998776533 234566667777788999999999999876432111
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......-|..+...|++..|...|-.+
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122334577788999999999999876
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.15 E-value=1 Score=38.36 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh-cHHHHHHHHHHHhc
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQ-NWSHVLSYVNKAEA 246 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~-dw~~V~~~v~KAk~ 246 (971)
.+..+|..++..|++++|+++|.++.+++.+ -.....++-.+....+ +|..+..++.++-+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5788999999999999999999999988643 3456667777777778 79999999988754
No 44
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.58 E-value=0.83 Score=39.99 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhccc--CCch--hHHHHHHHHHHHHHhccCHHHHHHHHHHHh
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC--TNGK--HVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 815 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdyc--ts~g--h~IDm~l~lIRV~if~~D~~~V~~~i~KA~ 815 (971)
.+-+++..+|..|...|+.++|+++|.++.+.+ .+.. ..+....++-.+-...+|+....++..||-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999999999997765 2222 346666666666677799998888888874
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.58 E-value=19 Score=44.22 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
....++..+|..+...|++++|..+|.++.+.- +. ..+...++-.+....|+|..+...+.++-..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344567777777777777777777777765542 22 2355556666666677777777777776543
No 46
>KOG1840|consensus
Probab=90.41 E-value=3.1 Score=50.32 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hhcCCCchhhHHHHHHHHHHHhhc
Q psy11733 161 LEKLDNDLKNYKSNSIK--ESIRRGHDDLGDHYLDCGDLSNALKCYSRARD-----YCTNGKHVVDMCLNVIRVSVYLQN 233 (971)
Q Consensus 161 le~Le~eLk~yk~NliK--eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rd-----ycts~~h~idm~l~lIrv~I~~~d 233 (971)
..-++.-|...++..|+ +.+-..+.+||..|+..|++.+|..++.++.+ +-++.+.+-..+.++..+.-..+.
T Consensus 261 v~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 261 VNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc
Confidence 34455666666777775 45667799999999999999999999987432 224455566666777777778899
Q ss_pred HHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 234 WSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 234 w~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..+..++.++-.++....+.++ + ..+++++--|-.++.+|+|++|-+.|=++
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~-~-~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDN-V-NLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccc-h-HHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999887663333222 1 35778887777888999999999998876
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.72 E-value=1.5 Score=39.27 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=56.7
Q ss_pred hcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHH
Q psy11733 193 DCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAE 272 (971)
Q Consensus 193 ~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~ 272 (971)
+.|++++|++.|.++.+...+.. .....+.+-.+.+..|+|..+...+.+.+. .+ . ........|..+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~----~~---~----~~~~~~l~a~~~ 68 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQKLKL----DP---S----NPDIHYLLARCL 68 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTH----HH---C----HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCC----CC---C----CHHHHHHHHHHH
Confidence 35899999999999877765422 344566677788888999999888877111 11 0 123344558889
Q ss_pred hhccCHHHHHHHHhh
Q psy11733 273 LATRKYKTAARFFLQ 287 (971)
Q Consensus 273 L~~r~yk~AA~~FLe 287 (971)
+..|+|.+|.+.|-.
T Consensus 69 ~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 69 LKLGKYEEAIKALEK 83 (84)
T ss_dssp HHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 999999999988753
No 48
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.52 E-value=0.51 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK 215 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~ 215 (971)
++..||+.|.+.||+++|.++|.+....+.++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 467899999999999999999999766554443
No 49
>KOG2072|consensus
Probab=89.12 E-value=21 Score=45.01 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhC-CChHHHHHHHHHHHHcCceeEEEcCCC
Q psy11733 358 NLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN-TTIQALENELMTLILDGQIQARIDSHN 436 (971)
Q Consensus 358 ~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFg-vsvd~lE~eLv~LI~dgrL~ARIDsvn 436 (971)
+-|+.+-+-+..-++-+++|..|-..+-.+++.|.-..|.+|+++.+-+--- ++.-+||+-|+.--..+-+..+||...
T Consensus 407 k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~ 486 (988)
T KOG2072|consen 407 KKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHES 486 (988)
T ss_pred HHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhccceeEEecccc
Confidence 3444444556666777899999999999999999999999999988765432 577789999999999999999999999
Q ss_pred CEEEEcc
Q psy11733 437 KILYAKQ 443 (971)
Q Consensus 437 giL~~~~ 443 (971)
+.|.-..
T Consensus 487 ~~v~Fgs 493 (988)
T KOG2072|consen 487 NSVSFGS 493 (988)
T ss_pred ceeeecc
Confidence 9998764
No 50
>KOG1125|consensus
Probab=88.74 E-value=18 Score=44.11 Aligned_cols=157 Identities=21% Similarity=0.227 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH
Q psy11733 144 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNS--IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 221 (971)
Q Consensus 144 ~~D~~wie~~~~~n~~~le~Le~eLk~yk~Nl--iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~ 221 (971)
..|......+++- .||. +..+. ++.+| +.-||-+|+-.|+|+.|.+||..+...-++ -..+
T Consensus 404 ~~~~~~l~~i~~~------fLea----a~~~~~~~Dpdv---Q~~LGVLy~ls~efdraiDcf~~AL~v~Pn----d~~l 466 (579)
T KOG1125|consen 404 FLDSSHLAHIQEL------FLEA----ARQLPTKIDPDV---QSGLGVLYNLSGEFDRAVDCFEAALQVKPN----DYLL 466 (579)
T ss_pred CCCHHHHHHHHHH------HHHH----HHhCCCCCChhH---HhhhHHHHhcchHHHHHHHHHHHHHhcCCc----hHHH
Confidence 4566666665542 2332 23344 66666 556899999999999999999987654332 2467
Q ss_pred HHHHHHHHHhhcH-HHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhccc---CCCCccc
Q psy11733 222 LNVIRVSVYLQNW-SHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHF---DYCDFPE 297 (971)
Q Consensus 222 l~lIrv~I~~~dw-~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f---~~~~~~e 297 (971)
|+.+-..+--++- ..+.+-+.+|.++.- .. ++. +-=-|+.+|..|.|++|+++||.+-- .+.+..+
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP---~y-----VR~--RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~ 536 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQP---GY-----VRV--RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNK 536 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCC---Ce-----eee--ehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccccc
Confidence 8888887766543 345566777776531 11 112 23358999999999999999998731 1122222
Q ss_pred CCC-hhHHHHHHHHHhhhcCChHHHHHhccCC
Q psy11733 298 LLS-PNNIATYGGLCALATFDRSELEKQVIFS 328 (971)
Q Consensus 298 lls-~~Dva~Y~~LcaLaS~dR~eLK~kVlds 328 (971)
.-- .+.|--++= .+|..++|.++-..+-.+
T Consensus 537 ~~~~se~iw~tLR-~als~~~~~D~l~~a~~~ 567 (579)
T KOG1125|consen 537 APMASENIWQTLR-LALSAMNRSDLLQEAAPS 567 (579)
T ss_pred CCcchHHHHHHHH-HHHHHcCCchHHHHhccc
Confidence 221 233444444 677778888843333333
No 51
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.70 E-value=0.33 Score=37.11 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHHHhhhHHHhhCCHHHHHHHHHHhhcccCCc
Q psy11733 753 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNG 784 (971)
Q Consensus 753 g~~dlg~~y~~iGDl~~Alkay~r~rdycts~ 784 (971)
++..||+.|.+.||.++|+++|.++..-+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999976544433
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.26 E-value=44 Score=37.78 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+..+|..|...|+++.|.++|.++.+.. .........+..+....|+|..+.+.+.++...... .+.. ...
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~---~~~ 180 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRV---EIA 180 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchH---HHH
Confidence 45555666666666666666665554431 112344445555555556666555555554332111 1100 011
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+...-|..++..+++.+|...|-.+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 22233344445555666555555543
No 53
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=88.16 E-value=0.69 Score=40.68 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
.+.+|+.-...+++..+|..||+|++.+|.-|..||.-|+|.-..+.
T Consensus 4 ~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~ 50 (69)
T PF09012_consen 4 EIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMS 50 (69)
T ss_dssp HHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 46678888999999999999999999999999999999999744443
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=87.96 E-value=6.4 Score=39.76 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+.-...+..+|..+...|++++|+.+|.++......+........++-.+....|++..+...+.++-....... ..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~---~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP---QA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HH
Confidence 334667889999999999999999999998766433322334555555666778999999999999876532111 11
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....+.+.-..|-..+..|+|..|...|-++
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 1122333334444555788888776666554
No 55
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=87.89 E-value=7.6 Score=40.11 Aligned_cols=100 Identities=10% Similarity=0.054 Sum_probs=78.6
Q ss_pred ch-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCC
Q psy11733 176 IK-ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 176 iK-eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
+. ++.-.+.+.+|-.+++.|++++|.+.|.-+-.+- -...+-.+++=.+.=.+++|..+.....+|-.+-- .+
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--dd- 102 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DA- 102 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC-
Confidence 45 7788899999999999999999999997764432 23456666776677778999999999999876531 11
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++.-...|..+|..|+-..|.+.|-.+
T Consensus 103 -------p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 -------PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred -------chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233478899999999999999999876
No 56
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.79 E-value=1.5 Score=37.32 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=50.7
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHh
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQ-NWSHVLSYVNKAE 815 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~-D~~~V~~~i~KA~ 815 (971)
..+..+|..|.+.||.++|+++|.++.+++... .++.+++-.+-...+ ++.....+..+|-
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 357889999999999999999999999987543 456777777777888 6888888888774
No 57
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=87.45 E-value=4.5 Score=49.61 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..|+..|+|++|+++|.++...+.. -....++-.+.+.+++|..+.....++-.+- ++ .
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~-------~ 193 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELD---PD-------Y 193 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CC-------C
Confidence 45778999999999999999999998877653 2356677777888899999999999987642 11 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+.....|.+++..|+|..|...|-.+
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233455677889999999998887543
No 58
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=87.44 E-value=5.5 Score=40.57 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.....++.+|..+...|++++|..+|.++......+......+.++-.+....|+|..+...+.++-..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344568999999999999999999999987655433334456677777777889999999999988764
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=86.62 E-value=32 Score=45.87 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch--h---------hHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV--V---------DMCLNVIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~--i---------dm~l~lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
--.++..+|..|...|++++|.++|.++.+........ . ...+..-.+.+..+++..+...+.++...-
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999987765433221 1 111222334556789999988888887652
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 249 DFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 249 d~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. . . + .....-|-.++..|+|.+|...|-.+
T Consensus 382 P--~---~-~----~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 382 N--T---D-S----YAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred C--C---C-H----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1 1 1 12233466788899999999998776
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.53 E-value=5.8 Score=43.34 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+..++.+ +..|++.+|.+.+.+..+...+ -+.....+.+....++|..+...+.++........ -.
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~ 146 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGD----PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD--------SA 146 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---------H
T ss_pred cccccccc-cccccccccccccccccccccc----cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC--------CH
Confidence 46677888 7999999999988776443322 23445667778888999999999999875443222 14
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChh--HHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchH
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPN--NIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQ 340 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~--Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~ 340 (971)
.+....|-.+...|+++.|...|=.+. . ..|+ ++....+..-+-..+..+++. ++. ....-....|.
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al-~-------~~P~~~~~~~~l~~~li~~~~~~~~~~-~l~--~~~~~~~~~~~ 215 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKAL-E-------LDPDDPDARNALAWLLIDMGDYDEARE-ALK--RLLKAAPDDPD 215 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH-H-------H-TT-HHHHHHHHHHHCTTCHHHHHHH-HHH--HHHHH-HTSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-H-------cCCCCHHHHHHHHHHHHHCCChHHHHH-HHH--HHHHHCcCHHH
Confidence 566778888889999999998886652 1 1232 233333333333344444433 211 11111233466
Q ss_pred HHHHH-HH-HHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHH
Q psy11733 341 LRDIL-VQ-FYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQ 383 (971)
Q Consensus 341 lr~lI-~a-F~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~ 383 (971)
+...+ .. +.-+++..++..+.+....-..|+-..-|.-.++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 65433 33 456899999999999888888888887776666554
No 61
>KOG0547|consensus
Probab=86.35 E-value=2.5 Score=50.31 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
+-.+|+.|+..|.|++|+++|..+.+.|.+.. + .+-+.-.+.+-.|||+.|.+.-+||-++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep-i--FYsNraAcY~~lgd~~~Vied~TkALEl 178 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP-I--FYSNRAACYESLGDWEKVIEDCTKALEL 178 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc-h--hhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44689999999999999999999999997641 1 2335666777889999999999988654
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=86.25 E-value=18 Score=38.24 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh--------hcHHHHHHHHHHHhcc-Cc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL--------QNWSHVLSYVNKAEAT-PD 249 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~--------~dw~~V~~~v~KAk~~-id 249 (971)
....+++.+|..|+..|+++.|.+.|.++....+...+.....+.+-.+.... +++..+.+.+.++-.. ++
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999999888776665433333222222222 6777777777766432 22
Q ss_pred ccCCCCChhHHHHHH----------HHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 250 FAEGKDNNQAVFTKL----------KVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 250 ~~~d~~r~~~l~~kL----------k~~~GL~~L~~r~yk~AA~~FLea 288 (971)
... .+....++ ....|..++..|+|..|...|-..
T Consensus 148 ~~~----~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 148 SEY----APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111 11111111 124566788889999999887765
No 63
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=86.16 E-value=6.8 Score=44.34 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH--VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h--~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
-..++..++..+.+.|++++|.+.+.++........+ .......+..+....+++..+...+.++..... + .
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~--~- 213 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP---Q--C- 213 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc---C--C-
Confidence 4567888999999999999999999998665433222 223344556666778999999999999866421 1 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|++|...|-.+
T Consensus 214 ----~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 214 ----VRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123345566778899999999988776
No 64
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.87 E-value=9.4 Score=37.54 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+++.+|..+-..|+.++|+..|.+....-.+..+.....+++-...-.+|+.+.....+.++...- .++ .+..
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~-----~~~~ 75 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDD-----ELNA 75 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc-----cccH
Confidence 578899999999999999999999877654555556777777777777889999988888775421 111 1235
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+++..++.....|++++|.+.|+.+
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67788889999999999999999986
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=85.74 E-value=9.6 Score=38.00 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
+..+|..+...|++++|.++|.++...-. ...+...++-.+....|+|..+...+.++-..-. ++ ..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p---~~-------~~ 93 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA---SH-------PE 93 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CC-------cH
Confidence 45679999999999999999998765432 2356777777788889999999999999876421 11 23
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....-|..+...|++.+|...|-.+
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466788889999999999999876
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=85.72 E-value=11 Score=39.28 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=79.4
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 174 NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 174 NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
..|.+++-.+.+..|--+|..|++++|.+.|.-+.-+-. .--+.++++-.+.=..++|..+......|-.+-. .|
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~d 104 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--ND 104 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CC
Confidence 447788999999999999999999999999876543322 2245677888888888999999988887765421 11
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. + | -.+.|..+|..|+-..|..+|-.+
T Consensus 105 p-~-p------~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 105 Y-R-P------VFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred C-C-c------cchHHHHHHHhCCHHHHHHHHHHH
Confidence 1 1 2 368899999999999999999887
No 67
>KOG2908|consensus
Probab=85.66 E-value=17 Score=41.80 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=67.8
Q ss_pred hcchhhhhhhc-cchhHHHHHHHhhcCChhHHHHHHHH-----------------H--H---------------------
Q psy11733 824 IFSSGFKLFLE-LEPQLRDILVQFYNSKYATCLNLLAQ-----------------I--M--------------------- 862 (971)
Q Consensus 824 i~s~~f~~~Le-~~P~lr~li~sfy~~~Y~~~~~~L~~-----------------i--m--------------------- 862 (971)
+..|-|.+... ..-++.+++.+|=.++...|.+.-.. | |
T Consensus 221 L~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~I 300 (380)
T KOG2908|consen 221 LAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEI 300 (380)
T ss_pred HhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHH
Confidence 34444444443 34678889999999998888754321 1 1
Q ss_pred ---------HHHHHHHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHH
Q psy11733 863 ---------ALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARK 913 (971)
Q Consensus 863 ---------aie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~ 913 (971)
..|-=+.+-++-|-|...||-|+|+++-.-.-+|.-.-+++.++++.+-..
T Consensus 301 a~~tkip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~W 360 (380)
T KOG2908|consen 301 AEATKIPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDEW 360 (380)
T ss_pred HHHhCCCHHHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHHHHHHH
Confidence 144445788899999999999999999999999999999999999987544
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.56 E-value=3.1 Score=35.09 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
+.+|..+++.|++++|.++|.++...- ....+..+.+-.+....|+|..+...+.++-.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654 23567888888888899999999998888743
No 69
>KOG0547|consensus
Probab=85.48 E-value=1.6 Score=51.92 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=44.8
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHH-hccCHHHHHHHHHHHhc
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSV-YLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~i-f~~D~~~V~~~i~KA~~ 816 (971)
+..+|++|++-|.+++|+++|..+.+.|..- -+++.-+--++ -.+||..|..-..||=.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e----piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDE----PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCC----chhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3478999999999999999999999999873 22333333333 34899999888888744
No 70
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=85.29 E-value=3.6 Score=43.00 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHH-HHHHHHHHHHHHHhccccce-ecHHhHHHHhC
Q psy11733 342 RDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVN-TLYTQIRNRALIQYFSPYLS-ADLNKMSVAFN 409 (971)
Q Consensus 342 r~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~-~L~~~IR~kaliQYl~PYss-V~L~~MA~aFg 409 (971)
.++..++.+++|..|++.+.. ...+++..++- .+...||.+++......|.+ |+++.+++-+|
T Consensus 139 l~l~~a~~~gny~~ff~l~~~-----~~~~~l~~~l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~ 203 (204)
T PF03399_consen 139 LELCRALMEGNYVRFFRLYRS-----KSAPYLFACLMERFFNRIRLRALQSISKAYRSSIPLSFLAELLG 203 (204)
T ss_dssp HHHHHHH--TTHHHHHHHHT------TTS-HHHHHHHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcC
Confidence 346688999999999998832 35566666655 49999999999999999999 99999998876
No 71
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.28 E-value=4.4 Score=44.27 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHH
Q psy11733 159 MKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVL 238 (971)
Q Consensus 159 ~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~ 238 (971)
...++++.-++.+....--+.--..+..+|.++.+.|+..+|.++|.++.+.-+... ++...++-+.|..|+...+.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~---~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP---DARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCChHHHH
Confidence 344455554544442111112234578899999999999999999999877755433 44556666778889999877
Q ss_pred HHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 239 SYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 239 ~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+.+........ | .+...-|.+++..|+++.|...|-.+
T Consensus 201 ~~l~~~~~~~~~~------~----~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 201 EALKRLLKAAPDD------P----DLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHH-HTS------C----CHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCcCH------H----HHHHHHHHHhcccccccccccccccc
Confidence 7777776554211 1 23455688889999999999999876
No 72
>KOG2376|consensus
Probab=85.14 E-value=40 Score=41.43 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------hhc--------------
Q psy11733 159 MKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARD------------YCT-------------- 212 (971)
Q Consensus 159 ~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rd------------yct-------------- 212 (971)
-++.++|.-|+.++ .....-+....=.|.++|+.|+|++|++.|.++-. -|.
T Consensus 90 Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 35666777777766 22222244566679999999999999999976511 110
Q ss_pred --CCCchhhHHHHHHHHHHHhhcHHHHHHHHHHH-----hccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHH
Q psy11733 213 --NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA-----EATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFF 285 (971)
Q Consensus 213 --s~~h~idm~l~lIrv~I~~~dw~~V~~~v~KA-----k~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~F 285 (971)
.+..--+.++|.-=+.|..|+|..+.+.+.+| +.+.+.....+..+.=.+-+++.-+..+..+|+=.+|.+..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 01223466777777788899999999999999 33322211111112223555566666667788888887755
Q ss_pred hh
Q psy11733 286 LQ 287 (971)
Q Consensus 286 Le 287 (971)
-+
T Consensus 248 ~~ 249 (652)
T KOG2376|consen 248 VD 249 (652)
T ss_pred HH
Confidence 44
No 73
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=84.96 E-value=1.4 Score=37.54 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=40.3
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCce
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQI 428 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL 428 (971)
|...|.+|+.-...+++..+|+.||+|..-+-+.|..|-..|.|
T Consensus 1 R~~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i 44 (57)
T PF08220_consen 1 RQQQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGLI 44 (57)
T ss_pred CHHHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56678889999999999999999999999999999999998875
No 74
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.79 E-value=4.5 Score=37.15 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..+++.+|..+++.|+++.|.++|.++...........+..+..-.+....+++..+...+.++...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4567889999999999999999999988776555445566777777777889999999999887654
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.52 E-value=48 Score=36.56 Aligned_cols=158 Identities=22% Similarity=0.165 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
...+...||-=|++.||+..|.+.+.++.+.-. ...+.....--+.-..|..+++.+...||-++--..+|
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP---s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------ 104 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDP---SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------ 104 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc------
Confidence 345667889999999999999999999866532 23344333333344558999999999998776443332
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhc----CChHHHHHhccCChhhhhhh
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT----FDRSELEKQVIFSSGFKLFL 335 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS----~dR~eLK~kVlds~efr~~L 335 (971)
-|.-| |-+...+|.|.+|-..|..+. ....|+ .+.+.--=.|+|++=. ..+..+++ -|
T Consensus 105 ---VLNNY-G~FLC~qg~~~eA~q~F~~Al-~~P~Y~---~~s~t~eN~G~Cal~~gq~~~A~~~l~r----------aL 166 (250)
T COG3063 105 ---VLNNY-GAFLCAQGRPEEAMQQFERAL-ADPAYG---EPSDTLENLGLCALKAGQFDQAEEYLKR----------AL 166 (250)
T ss_pred ---hhhhh-hHHHHhCCChHHHHHHHHHHH-hCCCCC---CcchhhhhhHHHHhhcCCchhHHHHHHH----------HH
Confidence 12233 445678999999999999983 333343 3445556689999933 23333433 33
Q ss_pred ccchH----HHH-HHHHHHhCCHHHHHHHHHHHH
Q psy11733 336 ELEPQ----LRD-ILVQFYNSKYATCLNLLAQIM 364 (971)
Q Consensus 336 e~eP~----lr~-lI~aF~~~~Y~~~l~~L~~~~ 364 (971)
+..|. ..+ .=..|-.++|....-.++.+.
T Consensus 167 ~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 167 ELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33222 223 334477888887776666654
No 76
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=84.17 E-value=7.7 Score=38.40 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 748 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 748 esIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
..-.++...+|..+..-||+++|.+.|.++.+....+.-+--..+.+.+|-+..+++....+.+.+.
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3668899999999999999999999999999888666555566788899999999999999988664
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=84.03 E-value=16 Score=38.68 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh-hcH--HHHHHHHHHHhccCcccCCCCCh
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-QNW--SHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~-~dw--~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
-.++..||..|...|++++|..+|.++...-.. ..+...+.-.+-.+. |++ ..+...+.++-..--. +
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~------~ 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN------E 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC------C
Confidence 348999999999999999999999998776532 345555554433233 453 7777777777553211 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|++|...|-.+
T Consensus 144 ----~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 144 ----VTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233456688889999999999998775
No 78
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=84.02 E-value=2.5 Score=34.83 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 381 YTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
++.++.......+.|-..+ +...||+.||+|...+.+.|..|...|-|.
T Consensus 2 ~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 2 AERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred HHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 5677888888778888888 899999999999999999999999998764
No 79
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.99 E-value=2.2 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCT 212 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct 212 (971)
++..+|..|+..|++++|.++|.++...+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 578899999999999999999999877654
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=83.91 E-value=7.8 Score=44.69 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
+...|.-.+..|+|..|+++|.++.....+ -.....++-.+.+..|++..+...+.+|-.+-. + . ..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---~---~----~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDP---S---L----AK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---C---C----HH
Confidence 456788899999999999999998776543 245667777788889999999999998866521 1 1 22
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....|.+++..|+|..|...|-.+
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445688889999999999998765
No 81
>KOG3054|consensus
Probab=83.73 E-value=1.8 Score=47.02 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=50.7
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
+++|++--++|.|+.+|..||+-....-+-|-.|+.+|.|.+.||-..+.|+...
T Consensus 205 Fv~YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~ 259 (299)
T KOG3054|consen 205 FVEYIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISM 259 (299)
T ss_pred HHHHHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecH
Confidence 4678888999999999999999888888899999999999999999999999864
No 82
>KOG0624|consensus
Probab=83.42 E-value=40 Score=39.07 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHH
Q psy11733 159 MKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVL 238 (971)
Q Consensus 159 ~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~ 238 (971)
.-|--|+.-+.++.+-.-+.++- -|+.+|+-++..|.++.|+..|-.+-+.-. .. ...++.---+.+-+|.-..+.
T Consensus 17 ~~Lvll~~~~e~a~~~~~~adve-khlElGk~lla~~Q~sDALt~yHaAve~dp--~~-Y~aifrRaT~yLAmGksk~al 92 (504)
T KOG0624|consen 17 LVLVLLELFLEGAESTASPADVE-KHLELGKELLARGQLSDALTHYHAAVEGDP--NN-YQAIFRRATVYLAMGKSKAAL 92 (504)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hh-HHHHHHHHHHHhhhcCCccch
Confidence 34555677777777766656654 488999999999999999999988776532 22 223344445666667776676
Q ss_pred HHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCCh
Q psy11733 239 SYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDR 318 (971)
Q Consensus 239 ~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR 318 (971)
..+++.-++ .+|. .--+...|..+|-+|.+..|...|=.. +.+-...+..
T Consensus 93 ~Dl~rVlel---KpDF-------~~ARiQRg~vllK~Gele~A~~DF~~v-l~~~~s~~~~------------------- 142 (504)
T KOG0624|consen 93 QDLSRVLEL---KPDF-------MAARIQRGVVLLKQGELEQAEADFDQV-LQHEPSNGLV------------------- 142 (504)
T ss_pred hhHHHHHhc---CccH-------HHHHHHhchhhhhcccHHHHHHHHHHH-HhcCCCcchh-------------------
Confidence 667665443 2221 112356788899999999999998765 2221111111
Q ss_pred HHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccce
Q psy11733 319 SELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLS 398 (971)
Q Consensus 319 ~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYss 398 (971)
.+-+.++.-.++ +--....+++.|-++++....+.+..+-..- + .+.=++++|.+||+.-=+|-+.
T Consensus 143 ~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---~-----Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 143 LEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---P-----WDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred HHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---c-----chhHHHHHHHHHHHhcCcHHHH
Confidence 122222211111 1112445677788999988887776543321 1 2445678999999999898887
Q ss_pred ecHHhHHHHhCCC
Q psy11733 399 ADLNKMSVAFNTT 411 (971)
Q Consensus 399 V~L~~MA~aFgvs 411 (971)
|.==..|..+..+
T Consensus 209 I~Dlk~askLs~D 221 (504)
T KOG0624|consen 209 IHDLKQASKLSQD 221 (504)
T ss_pred HHHHHHHHhcccc
Confidence 7544445555443
No 83
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.99 E-value=2.5 Score=31.05 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCT 212 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct 212 (971)
.++..+|..|.+.||+++|.++|.+..+...
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3578899999999999999999999887654
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.13 E-value=8.2 Score=42.88 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHH
Q psy11733 157 AAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 157 n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~ 236 (971)
...-.+.++.=++.|-++. -...+++.+|..|+..|++.+|+..|.++...-..+...-|..+.+..+....+++..
T Consensus 159 y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 4444555666666665432 2456899999999999999999999999876656666678888888888888999999
Q ss_pred HHHHHHHHhc
Q psy11733 237 VLSYVNKAEA 246 (971)
Q Consensus 237 V~~~v~KAk~ 246 (971)
+...+.++-.
T Consensus 236 A~~~~~~vi~ 245 (263)
T PRK10803 236 AKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=82.05 E-value=65 Score=39.38 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
....+++=+|.||-..|+++.|++++.+..+.++| .+|..+..-++--..||...+...+..|+.+- ... |
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~D---R-- 262 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELD-LAD---R-- 262 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhh---H--
Confidence 35678899999999999999999999999887654 58999999999999999999999999999752 221 2
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChh--HHHHHHHHHhhhcCChH
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPN--NIATYGGLCALATFDRS 319 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~--Dva~Y~~LcaLaS~dR~ 319 (971)
.|..-.+.+.|..|..++|.+.+-- |..-+.+..-.-. .+.-|.+=||-+-..+.
T Consensus 263 ----yiNsK~aKy~LRa~~~e~A~~~~~~--Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 263 ----YINSKCAKYLLRAGRIEEAEKTASL--FTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHh--hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567788999999998877542 1111111111112 35677777777765544
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.00 E-value=12 Score=39.42 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..+++.|+++.|.+.|.++...-.++....+..+.+-.+....++|..+.+.+.++-..-...... .
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-------~ 107 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-------D 107 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-------H
Confidence 578899999999999999999999876654444444566677777778899999999999886532211110 1
Q ss_pred HHHHHHHHHHhhc--------cCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELAT--------RKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~--------r~yk~AA~~FLea 288 (971)
......|..+... +++..|.+.|-..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~ 141 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL 141 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 1122234444433 7788888887665
No 87
>KOG1586|consensus
Probab=81.59 E-value=33 Score=37.98 Aligned_cols=195 Identities=20% Similarity=0.217 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-h-hcCCCchhhHHHHHHHHHHHhhcHHHHHHHHH--------------HH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARD-Y-CTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVN--------------KA 244 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rd-y-cts~~h~idm~l~lIrv~I~~~dw~~V~~~v~--------------KA 244 (971)
-.++.+.|+++.+.|+..+|..+|..+-. | -..+..-++++-.-|.+...+|++.++-++-- +|
T Consensus 54 G~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~eka 133 (288)
T KOG1586|consen 54 GDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKA 133 (288)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHH
Confidence 35688888888888886655555544321 0 02334445666666766666676666433221 22
Q ss_pred hccCcccCCCC-----ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC--ChhHHHHHHHHHhhhcCC
Q psy11733 245 EATPDFAEGKD-----NNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELL--SPNNIATYGGLCALATFD 317 (971)
Q Consensus 245 k~~id~~~d~~-----r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell--s~~Dva~Y~~LcaLaS~d 317 (971)
-...+.+.+|= ....-+--|||+.= .-..+.|..|...|=+......+ +.++ +..|-..=.+||-|+.-|
T Consensus 134 I~~YE~Aae~yk~ees~ssANKC~lKvA~y--aa~leqY~~Ai~iyeqva~~s~~-n~LLKys~KdyflkAgLChl~~~D 210 (288)
T KOG1586|consen 134 IAHYEQAAEYYKGEESVSSANKCLLKVAQY--AAQLEQYSKAIDIYEQVARSSLD-NNLLKYSAKDYFLKAGLCHLCKAD 210 (288)
T ss_pred HHHHHHHHHHHcchhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcc-chHHHhHHHHHHHHHHHHhHhccc
Confidence 11222222221 11111334455332 22456788888887665322111 1122 233555567888888555
Q ss_pred hHHHHHhccCChhhhhhhccchH---------HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHH
Q psy11733 318 RSELEKQVIFSSGFKLFLELEPQ---------LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQI 384 (971)
Q Consensus 318 R~eLK~kVlds~efr~~Le~eP~---------lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~I 384 (971)
--..+. .+.+|.+..|. +.+++.+.-+.+-..|-+...++.+.-.+|-|...++-.+-+.|
T Consensus 211 ~v~a~~------ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~si 280 (288)
T KOG1586|consen 211 EVNAQR------ALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSI 280 (288)
T ss_pred HHHHHH------HHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 322221 12234444443 78888888999999999999999999999999887765554443
No 88
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=81.07 E-value=12 Score=30.97 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
..+..+|..+...|+++.|.++|.+......... ++.+.+..+....+++..+...+.++..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5788999999999999999999998876553322 5666777777788999988888877643
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.60 E-value=1.5e+02 Score=36.49 Aligned_cols=100 Identities=20% Similarity=0.143 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
.+....+++.+|..|+..|++++|.+.|.++....... .+....+.++....|+|..+.+.+.++... ++
T Consensus 52 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~-----~~-- 121 (899)
T TIGR02917 52 DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK---NQVLPLLARAYLLQGKFQQVLDELPGKTLL-----DD-- 121 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---hhhHHHHHHHHHHCCCHHHHHHhhcccccC-----Cc--
Confidence 34566788889999999999999999998887654432 344556667777788888887666543211 11
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.-...+....|..+...|+|..|...|-.+
T Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 151 (899)
T TIGR02917 122 --EGAAELLALRGLAYLGLGQLELAQKSYEQA 151 (899)
T ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 113456677888888899999998888776
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.29 E-value=88 Score=34.23 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHH-HH---------------hhcHHHHHHH
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVS-VY---------------LQNWSHVLSY 240 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~-I~---------------~~dw~~V~~~ 240 (971)
.+....+.+.+|..|++.||++.|...|.++...-++...+-.+ +-++.++ .. ..|...+.+-
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a-~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A 143 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV-LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAA 143 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH-HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHH
Confidence 35677789999999999999999999999987766655544333 3333332 11 1244555555
Q ss_pred HHHHhccCcccCCCC-------ChhHHHHHHH---HHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHH
Q psy11733 241 VNKAEATPDFAEGKD-------NNQAVFTKLK---VAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGL 310 (971)
Q Consensus 241 v~KAk~~id~~~d~~-------r~~~l~~kLk---~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~L 310 (971)
+...+.+++.=++.+ +-..++++|. ..-|-+++..|+|..|+.-|=.. .+ +||..-...+...+++-
T Consensus 144 ~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v-~~--~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 144 FRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM-LR--DYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH-HH--HCCCCchHHHHHHHHHH
Confidence 555555544333221 1122334442 25566788899999888887765 22 45665555666666655
Q ss_pred Hhh
Q psy11733 311 CAL 313 (971)
Q Consensus 311 caL 313 (971)
+-.
T Consensus 221 ay~ 223 (243)
T PRK10866 221 AYR 223 (243)
T ss_pred HHH
Confidence 444
No 91
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.95 E-value=2.2 Score=31.40 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.5
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhccc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 781 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyc 781 (971)
.++..+|..|.+.||.++|.++|.++.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 367889999999999999999999987654
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=79.90 E-value=38 Score=43.69 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
..++-+-+.++.||+..|+..|.++...-....--+. .++.+....|++..+..+++|+- +....+ .
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~---~p~n~~-------~ 102 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ---SSMNIS-------S 102 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc---cCCCCC-------H
Confidence 4667788889999999999999887655433211122 55666667799999999988886 211111 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|..+...|+|..|.+.|=.+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23344456778889999999988776
No 93
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.75 E-value=3.8 Score=30.20 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 211 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc 211 (971)
.++..+|..|...|++++|+++|.++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987654
No 94
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=79.71 E-value=37 Score=35.77 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh--------hcHHHHHHHHHHHhccCc
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL--------QNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~--------~dw~~V~~~v~KAk~~id 249 (971)
+-...+.+.+|.-|+..||+..|...|.++...-+++.+.-++.+.+-.+.... .|-..+.+-+...+.++.
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 346678999999999999999999999998776665555544433322222211 111222222333333333
Q ss_pred ccCCCCCh-------hHHHHHH---HHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHH
Q psy11733 250 FAEGKDNN-------QAVFTKL---KVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGG 309 (971)
Q Consensus 250 ~~~d~~r~-------~~l~~kL---k~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~ 309 (971)
.-++..-. ..++++| ...-|-+++..|+|..|+..|-.+ ++ +||......+...+++
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v-~~--~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV-IE--NYPDTPAAEEALARLA 185 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH-HH--HSTTSHHHHHHHHHHH
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-HH--HCCCCchHHHHHHHHH
Confidence 22221111 1233333 235677889999999999888776 33 3455444444434443
No 95
>KOG1840|consensus
Probab=79.44 E-value=95 Score=37.95 Aligned_cols=242 Identities=15% Similarity=0.111 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhhcCCCchh---hHHHH-HHHHHHHhhcHHHHHHHHHHHhccCccc
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSR-ARDYCTNGKHVV---DMCLN-VIRVSVYLQNWSHVLSYVNKAEATPDFA 251 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r-~Rdycts~~h~i---dm~l~-lIrv~I~~~dw~~V~~~v~KAk~~id~~ 251 (971)
.+..-.+...||.-|...|+|++|...+.+ ++..|-+.++.. ..+++ +-.+....+++..+...+.+|-++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 345556666699999999999999999988 467675555332 22333 3334445678888888888888876643
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhc--CChHHHHHhccCCh
Q psy11733 252 EGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT--FDRSELEKQVIFSS 329 (971)
Q Consensus 252 ~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS--~dR~eLK~kVlds~ 329 (971)
-+.. +|.+-+-+. =-|..+..+|+|++|..++-.+. .-+.-....++.+|+....-.++.. +++-+.-.+++. .
T Consensus 275 ~G~~-h~~va~~l~-nLa~ly~~~GKf~EA~~~~e~Al-~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q-~ 350 (508)
T KOG1840|consen 275 FGED-HPAVAATLN-NLAVLYYKQGKFAEAEEYCERAL-EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ-K 350 (508)
T ss_pred cCCC-CHHHHHHHH-HHHHHHhccCChHHHHHHHHHHH-HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH-H
Confidence 3322 344333221 11334578999999999988762 2111122355667766655444443 334332222221 1
Q ss_pred hhhhhh----ccch---HH-HHHHHH-HHhCCHHHHHHHHHHHHHhc-----ccccchHHhHHHHHHHH-HHHHHHHhcc
Q psy11733 330 GFKLFL----ELEP---QL-RDILVQ-FYNSKYATCLNLLAQIMDNL-----LLDMYIAPHVNTLYTQI-RNRALIQYFS 394 (971)
Q Consensus 330 efr~~L----e~eP---~l-r~lI~a-F~~~~Y~~~l~~L~~~~~~L-----llD~yL~~Hv~~L~~~I-R~kaliQYl~ 394 (971)
.++-++ +.+| .+ -++-.. +..++|.+..+.+.+.-... ..|.+...++..+-... +.+.+.--..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 111111 2222 22 244444 56889998877777664432 34666665555443322 2222222222
Q ss_pred ccceecHHhHHHHhCCChHHHHHHHHHHHH
Q psy11733 395 PYLSADLNKMSVAFNTTIQALENELMTLIL 424 (971)
Q Consensus 395 PYssV~L~~MA~aFgvsvd~lE~eLv~LI~ 424 (971)
+|- ..++-| +.||++-+.++--+.+|+.
T Consensus 431 l~~-~~~~i~-~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 431 LFE-EAKDIM-KLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HHH-HHHHHH-HHhCCCCCchHHHHHHHHH
Confidence 221 234455 8899887778877777765
No 96
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=79.43 E-value=5.3 Score=35.68 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 244 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KA 244 (971)
.++.+|..|++.|++.+|++.+.+ ...- ++ ..+..+..-++.+.+++|..+.+.+.++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLD--PS-NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HC-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 466689999999999999999987 2222 12 2566667788899999999999988875
No 97
>KOG0548|consensus
Probab=79.35 E-value=19 Score=43.46 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk 265 (971)
..|.--++.||++.|+.+|+.......+ .|++ +-+-......+++|..+++.-.|... ..++|.. =.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvl--ySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~k-------gy 73 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVL--YSNRSAAYASLGSYEKALKDATKTRR---LNPDWAK-------GY 73 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCC-ccch--hcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhh-------HH
Confidence 4577889999999999999998887765 6664 34677777888999888777666654 4567754 12
Q ss_pred HHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHH
Q psy11733 266 VAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDIL 345 (971)
Q Consensus 266 ~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI 345 (971)
.-.|-++++.|+|.+|...|-+. ++ ..|+.-..|.||.-.-.-+|.. ...+..|.|..=+...|..+-.+
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~G-L~-------~d~~n~~L~~gl~~a~~~~~~~--~~~~~~p~~~~~l~~~p~t~~~~ 143 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEG-LE-------KDPSNKQLKTGLAQAYLEDYAA--DQLFTKPYFHEKLANLPLTNYSL 143 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHH-hh-------cCCchHHHHHhHHHhhhHHHHh--hhhccCcHHHHHhhcChhhhhhh
Confidence 34577899999999999998765 22 2344445566665443222221 34566666665555555544433
Q ss_pred HHHHhCCHHHHHHHHHHHHHhc
Q psy11733 346 VQFYNSKYATCLNLLAQIMDNL 367 (971)
Q Consensus 346 ~aF~~~~Y~~~l~~L~~~~~~L 367 (971)
....|...++++...-..+
T Consensus 144 ---~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 144 ---SDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ---ccHHHHHHHHHhhcCcHhh
Confidence 2334444444444433333
No 98
>PRK11189 lipoprotein NlpI; Provisional
Probab=78.03 E-value=39 Score=37.74 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-..++.+|..|.+.|+++.|...|.++...-. + ..+...++-.+....|+|..+...+.++-.+- +++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~------ 131 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRP--D-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD---PTY------ 131 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC------
Confidence 45688999999999999999999988876543 2 23555566666777899999998888886542 111
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-.|..+...|+|.+|...|-.+
T Consensus 132 -~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 132 -NYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122345677778889999999888765
No 99
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=77.27 E-value=8.4 Score=41.27 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 376 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 376 Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
-.+.+|+.||..++..-+.|=..++...+|+.||+|...|-+-|.+|-.+|-|.-. ...|..+..-
T Consensus 17 ~~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~--p~rG~~V~~~ 82 (230)
T COG1802 17 LADQVYEELREAILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIE--PNRGAFVAPL 82 (230)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEec--CCCCCeeCCC
Confidence 35688999999999999999999999999999999999999999999999988654 7778777654
No 100
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.21 E-value=4 Score=29.42 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 211 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc 211 (971)
++++.+|..|.+.|++++|.+.|.++.+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478899999999999999999999987654
No 101
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.14 E-value=3.5 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhccc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 781 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyc 781 (971)
..+..+|..|.+.|+.++|+++|.++...+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 357889999999999999999999987654
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.11 E-value=1.9e+02 Score=35.65 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
.+.....+..+|..|...|+++.|.++|.++.+.+.. ..+..+.+..+....|+|..+.+.+.++.... ++ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--~ 192 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR---SLYAKLGLAQLALAENRFDEARALIDEVLTAD---PG--N 192 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC--C
Confidence 4556677889999999999999999999998776543 24667788888888999999999999875431 11 1
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..++..|+|..|...|-.+
T Consensus 193 -----~~~~~~~~~~~~~~g~~~~A~~~~~~a 219 (899)
T TIGR02917 193 -----VDALLLKGDLLLSLGNIELALAAYRKA 219 (899)
T ss_pred -----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 233455677788899999999998876
No 103
>KOG2003|consensus
Probab=75.56 E-value=1.7e+02 Score=35.12 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=80.9
Q ss_pred HHHHHHHHhhccc-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHH
Q psy11733 164 LDNDLKNYKSNSI-KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVN 242 (971)
Q Consensus 164 Le~eLk~yk~Nli-KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~ 242 (971)
||..++.||+-+- +.|.-.+++.+|--+-..|++++|++||.++..-... ..+++..+..+.=.+.|-..+.+.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n---n~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5556667776554 5788999999999999999999999999998664432 23455555555556677777777777
Q ss_pred HHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 243 KAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 243 KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+.+++-. .|.+..||.- .+=..|+-..|..+.+++
T Consensus 583 q~~slip~------dp~ilskl~d----lydqegdksqafq~~yds 618 (840)
T KOG2003|consen 583 QANSLIPN------DPAILSKLAD----LYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred HhcccCCC------CHHHHHHHHH----Hhhcccchhhhhhhhhhc
Confidence 77776532 3666666533 244688999999999887
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=74.97 E-value=11 Score=31.60 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=47.6
Q ss_pred HhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 756 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 756 dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
++|..|.+.|+.++|.++|.++.+.- ..-.+..+.+-++....+++.....+..++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999997655 337788899999999999999888888877
No 105
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.84 E-value=6.7 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 211 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc 211 (971)
+++..||..|...|++++|.+++.++.+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 568899999999999999999999977665
No 106
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.44 E-value=5 Score=29.57 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhccc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 781 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyc 781 (971)
.++..+|.-|...|+.++|+++|.++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467889999999999999999999987543
No 107
>KOG1127|consensus
Probab=73.35 E-value=73 Score=41.49 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
+.+.--|+--||.+|.++-|...|.+||.++++.-.+ -....-..........+|..+...+-++-+.- ..+.
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~--- 560 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFA--- 560 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHH---
Confidence 4455567778999999999999999999999987432 12344566777888899999987644332211 1110
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.--=++..|++++..+++..|...|=.+
T Consensus 561 ----~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 561 ----CKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred ----HHhhhhhccccccCccchhhHHHHHHHH
Confidence 0001244799999999999999888765
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=72.24 E-value=35 Score=38.15 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..+...|++++|.+.+.++.+.-... ......+-.+....|+|+.....+.++....... +...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~------~~~~ 185 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS------SMLR 185 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC------cchh
Confidence 344456777777777777777777766543222 2233444445556677777777776665432211 1112
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..++..|++..|...|=..
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 223334566677777777777666543
No 109
>KOG1497|consensus
Probab=72.15 E-value=1.1e+02 Score=35.32 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhh----cccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 745 SIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR----DYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 745 likesIR~g~~dlg~~y~~iGDl~~Alkay~r~r----dycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
.-+|-+--....||..|.+-|+...|-....-.- .+-...+.++-.|+.+-|..+.-+|......||.+|
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455566667789999999999999988876542 222456778999999999999999999888899887
No 110
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=72.07 E-value=14 Score=31.75 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 378 NTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 378 ~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
..+++.|+..+...-+.|=+.+ +...||+.||+|...+-+-|..|..+|-|.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~ 55 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIE 55 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEE
Confidence 5678899999999999999999 999999999999999999999999999774
No 111
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.88 E-value=87 Score=33.43 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q psy11733 147 PLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIR 226 (971)
Q Consensus 147 ~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIr 226 (971)
..+...++-.+..+.++-=.-+++.+...-+.-=.-+.+.-|....+-||-..|.++|..+-.....|.-.-|+ .-+|
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~--ARlr 137 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL--ARLR 137 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH--HHHH
Confidence 47777777666665555544455444444333344567778899999999999999999986655544422243 4556
Q ss_pred HHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 227 VSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 227 v~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+..+-|-.......++++.+-..+ + ..+..-+.+-||+....|+|..|.+.|...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~-----n-~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDG-----N-PMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCC-----C-hhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 6655533333333334444432211 1 235666789999999999999999999986
No 112
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=71.72 E-value=7.9 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTN 213 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts 213 (971)
++..+|..|.+.|++++|.++|.++...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5788999999999999999999999887654
No 113
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=70.88 E-value=5.6 Score=36.47 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
.+.+|+.=+.++++..+|..|++|++.||.-|..++.-|++.-.
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 35567888999999999999999999999999999999998543
No 114
>KOG0551|consensus
Probab=70.84 E-value=32 Score=39.65 Aligned_cols=97 Identities=13% Similarity=0.229 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSR-ARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r-~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
.++-.-+-+=|+.|++..+|-.|..+|++ +...|..++-.+-++.|--.+.++++|+..+++..++|...--.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~------ 151 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT------ 151 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc------
Confidence 34667788889999999999999999999 67889888877777888899999999999999999999865211
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHH
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARF 284 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~ 284 (971)
-+.+.++- +.+++....|+.|...
T Consensus 152 --h~Ka~~R~--Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 152 --HLKAYIRG--AKCLLELERFAEAVNW 175 (390)
T ss_pred --hhhhhhhh--hHHHHHHHHHHHHHHH
Confidence 12344443 3445555666666554
No 115
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=70.54 E-value=8.5 Score=31.84 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=35.2
Q ss_pred HHHHHHHhc-cccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCC
Q psy11733 385 RNRALIQYF-SPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN 436 (971)
Q Consensus 385 R~kaliQYl-~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvn 436 (971)
|.+-+.+++ ..-..|+...||+.||+|...+.+.|..|-..| ..|.+..
T Consensus 1 R~~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~---~~I~~~~ 50 (55)
T PF08279_consen 1 RQKQILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG---IPIESKR 50 (55)
T ss_dssp HHHHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT----EEEEET
T ss_pred CHHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC---CeEEeeC
Confidence 445556666 333349999999999999999999999998777 4444433
No 116
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.09 E-value=22 Score=33.46 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-----hHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q psy11733 151 ETKNKKAAMKLEKLDNDLKNYKSNSI-----KESIRRG--HDDLGDHYLDCGDLSNALKCYSRA 207 (971)
Q Consensus 151 e~~~~~n~~~le~Le~eLk~yk~Nli-----KeSIR~~--~~dLg~~y~~iGDl~~Alk~y~r~ 207 (971)
+.+..+...=++.|+..|+..+.-.+ +.-+.|+ +++=|+||++.||+-+|+.|++-.
T Consensus 4 ~~l~ekiekYi~~leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa 67 (90)
T COG1849 4 EELAEKIEKYIELLEEALKEIKSRPGDRSAAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYA 67 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 45566677778888888888887666 3334444 778899999999999999987643
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.69 E-value=15 Score=40.92 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHH
Q psy11733 727 AAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSH 806 (971)
Q Consensus 727 n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~ 806 (971)
...-++.++.=++.|-++ .-...++..+|..|+..||+++|+..|.+..+.-......-|.++.+..+....+|+..
T Consensus 159 y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 344444555555555442 23467889999999999999999999999987666667889999999999989999998
Q ss_pred HHHHHHHHh
Q psy11733 807 VLSYVNKAE 815 (971)
Q Consensus 807 V~~~i~KA~ 815 (971)
..+...+.-
T Consensus 236 A~~~~~~vi 244 (263)
T PRK10803 236 AKAVYQQVI 244 (263)
T ss_pred HHHHHHHHH
Confidence 888777653
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.42 E-value=5.2 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhccc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 781 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyc 781 (971)
+++..+|..|...|+.++|.+.+.++.+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 578899999999999999999999987655
No 119
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=68.98 E-value=9.1 Score=30.55 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=32.7
Q ss_pred hccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 392 YFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 392 Yl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
++.-...+++..+++.||++...+.+.|..|...|.|..
T Consensus 8 ~l~~~~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 8 LLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 333345589999999999999999999999999988753
No 120
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=68.58 E-value=30 Score=46.14 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+..+|..|.+.|++++|+++|.++....+ + ..+..+++.++....|++..+...+.++.... ++ .+.
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P--~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~---p~---~~~--- 672 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREP--G-NADARLGLIEVDIAQGDLAAARAQLAKLPATA---ND---SLN--- 672 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CC---ChH---
Confidence 467899999999999999999999887643 3 35788899999999999999999999775431 11 111
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....-|..+...|++.+|...|-.+
T Consensus 673 -~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 673 -TQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1223456677899999999988775
No 121
>KOG1463|consensus
Probab=68.15 E-value=37 Score=39.24 Aligned_cols=147 Identities=19% Similarity=0.246 Sum_probs=92.1
Q ss_pred hhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHH---HHHHHhccCHHHHHHHHHH-------------------Hh
Q psy11733 758 GDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNV---IRVSVYLQNWSHVLSYVNK-------------------AE 815 (971)
Q Consensus 758 g~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~l---IRV~if~~D~~~V~~~i~K-------------------A~ 815 (971)
|-+||.--|+.-|+-.|-.+.|=-++.+..+..|..+ +---|..+-.+.|..-+.- |-
T Consensus 216 GIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~ 295 (411)
T KOG1463|consen 216 GILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAF 295 (411)
T ss_pred cceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHh
Confidence 5566666777777777777776666666554444322 2222333444444443321 11
Q ss_pred cCC---ChhhhhcchhhhhhhccchhHHHHHHHhhcCChhHHHHH-HHHH--------------------HHHHHHHHhh
Q psy11733 816 ATP---DFAEVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNL-LAQI--------------------MALENELMTL 871 (971)
Q Consensus 816 ~~r---df~~vi~s~~f~~~Le~~P~lr~li~sfy~~~Y~~~~~~-L~~i--------------------maie~EL~~f 871 (971)
.-| ||..|+- .++.=|...|-+|.=++++|+- .++. |-+| -.+|+-|++|
T Consensus 296 ~nRSLkdF~~AL~--~yk~eL~~D~ivr~Hl~~Lyd~----lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqM 369 (411)
T KOG1463|consen 296 GNRSLKDFEKALA--DYKKELAEDPIVRSHLQSLYDN----LLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQM 369 (411)
T ss_pred cCCcHHHHHHHHH--HhHHHHhcChHHHHHHHHHHHH----HHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHH
Confidence 111 2333321 1344456678888888877752 1110 1111 2399999999
Q ss_pred hhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHH
Q psy11733 872 ILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEY 910 (971)
Q Consensus 872 I~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l 910 (971)
|-+..+...+|-.+|.|.--...+.+++|++++++-..+
T Consensus 370 ILDKkf~G~LDQg~g~Liv~~e~~~d~~y~~aLetI~~m 408 (411)
T KOG1463|consen 370 ILDKKFYGTLDQGEGCLIVFEEPPADNTYDAALETIQNM 408 (411)
T ss_pred HHHHHhhcccccCCCeEEEeCCCCcchHHHHHHHHHHhc
Confidence 999999999999999999988889999999999876543
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=68.13 E-value=10 Score=31.92 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 192 LDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 192 ~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
.+.|++++|++.|.++.+.... ..++.+.+..+.+..|++..+...+.++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5679999999999998777543 567888999999999999999988887654
No 123
>KOG1861|consensus
Probab=67.69 E-value=2.1e+02 Score=34.63 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccccchHHh-HHHHHHHHHHHHHHHhccccc-eecHHhHHHHhCCChH
Q psy11733 344 ILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPH-VNTLYTQIRNRALIQYFSPYL-SADLNKMSVAFNTTIQ 413 (971)
Q Consensus 344 lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~H-v~~L~~~IR~kaliQYl~PYs-sV~L~~MA~aFgvsvd 413 (971)
+-.+.--++|..||..-. .=+-+..| ++-|++..|.+++.-.|++|. +|+++.+++.|.+.+.
T Consensus 429 vR~A~~~GNY~kFFrLY~-------~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~~~ 493 (540)
T KOG1861|consen 429 VRSAVTLGNYHKFFRLYL-------TAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFDSM 493 (540)
T ss_pred HHHHHHhccHHHHHHHHh-------hcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhchH
Confidence 445567899999997433 23334444 678889999999999999999 9999999999988643
No 124
>PRK12370 invasion protein regulator; Provisional
Probab=67.20 E-value=40 Score=41.13 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.+++.+|..+...|++++|+++|.++........ ...+....+....|++..+...+.++..... ++ .+
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p~---~~-- 441 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQHL--QD---NP-- 441 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc--cc---CH--
Confidence 45788899999999999999999998877654321 1222333345567888877777766543211 11 11
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|.++...|++++|...|-..
T Consensus 442 --~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 442 --ILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 22345677788899999999988664
No 125
>KOG0553|consensus
Probab=67.12 E-value=43 Score=38.05 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHH
Q psy11733 149 LIETKNKKAAMKLEKLDNDLKNYKSNS-IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRV 227 (971)
Q Consensus 149 wie~~~~~n~~~le~Le~eLk~yk~Nl-iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv 227 (971)
.+=..++.+--+|..-+..+++.+.-+ |++.-.++|-.||..|+..|++.+|.++|.+..+.-
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld---------------- 179 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD---------------- 179 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC----------------
Confidence 344567777778888888899988865 688899999999999999999999999999886643
Q ss_pred HHHhhcHHHHHHHHHHHhccCcc
Q psy11733 228 SVYLQNWSHVLSYVNKAEATPDF 250 (971)
Q Consensus 228 ~I~~~dw~~V~~~v~KAk~~id~ 250 (971)
-+|..+++++..|+..+..
T Consensus 180 ----P~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 180 ----PDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ----CCcHHHHHHHHHHHHHhcC
Confidence 3455666677777665443
No 126
>KOG3677|consensus
Probab=67.02 E-value=11 Score=44.17 Aligned_cols=203 Identities=14% Similarity=0.237 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcc---------c
Q psy11733 220 MCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAH---------F 290 (971)
Q Consensus 220 m~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~---------f 290 (971)
.+++++|+.+++||+..+.+++.--..-+- .+.|.+ ++.-+-|.++|..|+|.+|.+.|+.+- +
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy-----~t~p~c--~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~ 309 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIY-----GTEPMC--RVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMF 309 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhc-----Ccccce--eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 367999999999997776666553221111 111222 222577999999999999999999742 1
Q ss_pred CCCC-cccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhcc------------chH-HHHHHHHHHhCCH-HH
Q psy11733 291 DYCD-FPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLEL------------EPQ-LRDILVQFYNSKY-AT 355 (971)
Q Consensus 291 ~~~~-~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~------------eP~-lr~lI~aF~~~~Y-~~ 355 (971)
+..+ +.+.++.+.=-.+-.|+-..++-...+ | .++..++.. .|+ ++.+.. |.-.+| +.
T Consensus 310 ~~~~y~~d~inKq~eqm~~llai~l~~yPq~i-----D-ESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~-y~cpkflsp 382 (525)
T KOG3677|consen 310 SRTTYQYDMINKQNEQMHHLLAICLSMYPQMI-----D-ESIHSQLAEKYGDKMLPMQNGDPQVFKSLFS-YLCPKFLSP 382 (525)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHHHhCchhh-----h-HHHHHHHHHHhcchhhhhhcCChHHHHHHHH-HcCccccCC
Confidence 1112 234444443334444433223222111 1 122222211 122 122211 111111 23
Q ss_pred HHHHHHHHHHhcccccchHHhHHHHHHHHHHH----HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHH-------
Q psy11733 356 CLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNR----ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLIL------- 424 (971)
Q Consensus 356 ~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~k----aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~------- 424 (971)
|...+...-+.+-.+|++++ +..+...+++. .+.+|++=|.......+|.-..++.++=++-|+.||.
T Consensus 383 ~~~~~dgv~~~y~kePl~~q-lq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~n 461 (525)
T KOG3677|consen 383 VVPNYDGVLPNYHKEPLLQQ-LQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKN 461 (525)
T ss_pred CCcccccccccccccHHHHH-HHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHH
Confidence 34444555556677788765 45566666665 5788888899999999999889988877777777774
Q ss_pred ----cCceeEEEcCCCC
Q psy11733 425 ----DGQIQARIDSHNK 437 (971)
Q Consensus 425 ----dgrL~ARIDsvng 437 (971)
+|..+..++...+
T Consensus 462 lv~~sg~s~~d~~f~~~ 478 (525)
T KOG3677|consen 462 LVWTSGPSDLDDAFFSR 478 (525)
T ss_pred HHHhcCCccccccccCc
Confidence 5666667664444
No 127
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.72 E-value=48 Score=37.55 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc---HHHHHHHHHHHhccCcccCCCCChh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQN---WSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~d---w~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
.++.-||..|...|+++.|..+|.+..... +...+...+.-++-.+..+ -..+..-+.++-.. |.. +
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-D~~----~-- 226 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-DPA----N-- 226 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-CCc----c--
Confidence 478899999999999999999999987664 3356777777766655543 22333333333221 111 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
-+-..+-|...+.+|+|+.|+..|=
T Consensus 227 ---iral~lLA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 227 ---IRALSLLAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1233567788999999999987753
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.10 E-value=21 Score=36.31 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
...+..+|..|...|+.++|+++|.++.+............+++..+....+++.....+..+|-.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446788999999999999999999998765444333456777777788888888888887777654
No 129
>PLN03218 maturation of RBCL 1; Provisional
Probab=66.02 E-value=4.5e+02 Score=35.24 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHh
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 245 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk 245 (971)
.+..+...|.+.|++++|.+.|.++.+.-..+. ...+-.+|......|++..+.+.+.+..
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555556666666666666666555422111 2233334444444555555555555443
No 130
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=66.01 E-value=8.2 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.5
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG 784 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~ 784 (971)
.++..+|..|.+.|+.+.|.++|.++...+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999998766543
No 131
>PF00399 PIR: Yeast PIR protein repeat; InterPro: IPR000420 A number of yeast cell wall glycoproteins are characterised by the presence of tandem repeats of a region of 18 to 19 residues [, ].; GO: 0005199 structural constituent of cell wall, 0005618 cell wall
Probab=65.57 E-value=2 Score=28.67 Aligned_cols=10 Identities=70% Similarity=0.697 Sum_probs=8.4
Q ss_pred cccccchhhh
Q psy11733 3 LILDGQIQAR 12 (971)
Q Consensus 3 ~~~~~~~~~~ 12 (971)
-|.||||||-
T Consensus 6 QI~DGQiQat 15 (18)
T PF00399_consen 6 QIGDGQIQAT 15 (18)
T ss_pred cccCCceeee
Confidence 4899999984
No 132
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=65.53 E-value=40 Score=37.81 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=63.1
Q ss_pred HHhCCHHHHHHHHHHHHHh------cccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHH
Q psy11733 348 FYNSKYATCLNLLAQIMDN------LLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMT 421 (971)
Q Consensus 348 F~~~~Y~~~l~~L~~~~~~------LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~ 421 (971)
-.+=++..+...+..+... ...+.+=..+++.+.++|..+.=. -..|++..+|+.|++|.+++-+.+..
T Consensus 79 ~LnVd~~~ie~~~~~i~~~~~~~~l~~gelit~~Yld~l~~Eine~Lqe-----~G~vsi~eLa~~~~Lp~efl~~~li~ 153 (272)
T PF09743_consen 79 ALNVDLDHIERRAQEIVKSDKSLQLVQGELITDSYLDSLAEEINEKLQE-----SGQVSISELAKQYDLPSEFLKEELIS 153 (272)
T ss_pred hcCcCHHHHHHHHHHHHhCCCcEEEECCEEccHHHHHHHHHHHHHHHHH-----cCeEeHHHHHHhcCCcHHHHHHHHhh
Confidence 3344555555554443221 223344456778888888877433 38899999999999999999989999
Q ss_pred HHHcCceeEEEcCCCCEEEE
Q psy11733 422 LILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 422 LI~dgrL~ARIDsvngiL~~ 441 (971)
-...+.|+|++|.. +|++
T Consensus 154 ~~lg~~I~g~~d~~--~lyT 171 (272)
T PF09743_consen 154 KRLGKIIKGRLDGD--VLYT 171 (272)
T ss_pred hhcCcceeEEEeCC--EEec
Confidence 99999999999998 6665
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=65.05 E-value=28 Score=36.64 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
..++..|.-+++.||+.+|.+.|.++.+.-.++...-+..+.+.......+||..+...+.+-..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988888888889999999999999999999888887543
No 134
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.86 E-value=65 Score=35.26 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhhcCC-Cc-hhhHHHHHHHHHHHhh
Q psy11733 156 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA-RDYCTNG-KH-VVDMCLNVIRVSVYLQ 232 (971)
Q Consensus 156 ~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~-Rdycts~-~h-~idm~l~lIrv~I~~~ 232 (971)
....-++-|+.-+..+++..-.-..+....++|+.|+..||+++|++.|..+ ..|-... .. .-++++.+.+++...+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4556678888888888766554444455779999999999999999999986 2222211 11 2367778888888888
Q ss_pred cHHHHHHHH
Q psy11733 233 NWSHVLSYV 241 (971)
Q Consensus 233 dw~~V~~~v 241 (971)
|...+.+..
T Consensus 233 ~~~~~l~~~ 241 (247)
T PF11817_consen 233 DVEDYLTTS 241 (247)
T ss_pred CHHHHHHHH
Confidence 887766543
No 135
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=63.90 E-value=2.8e+02 Score=35.42 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..+.+.|++++|.++|.++...-+ .. .+....+..+.+..+++..+...+.++-.... . +
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~---~---- 116 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAP--D---K---- 116 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C---C----
Confidence 44688999999999999999999999776533 22 45667777888889999999999998865411 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.. ...-|..+...|++..|...|-.+
T Consensus 117 ~~--~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 117 AN--LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HH--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 344577788999999999998776
No 136
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.09 E-value=29 Score=32.19 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhhhcCCCchh------hHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 192 LDCGDLSNALKCYSRARDYCTNGKHVV------DMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 192 ~~iGDl~~Alk~y~r~Rdycts~~h~i------dm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
.+.|||.+|++.+.+..|++......- -..+++..+...+|++..+...+..|-.+....+|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 468999999999999999996554322 34566777788889999999988888766544443
No 137
>KOG2581|consensus
Probab=61.91 E-value=1.3e+02 Score=35.82 Aligned_cols=53 Identities=19% Similarity=-0.009 Sum_probs=41.0
Q ss_pred HHHHhhhHHHhhCCHHHHHHHHHHhhcccC---CchhHHHHHHHHHHHHHhccCHH
Q psy11733 753 GHDDLGDHYLDCGDLSNALKCYSRARDYCT---NGKHVVDMCLNVIRVSVYLQNWS 805 (971)
Q Consensus 753 g~~dlg~~y~~iGDl~~Alkay~r~rdyct---s~gh~IDm~l~lIRV~if~~D~~ 805 (971)
=+.-+|.-.+=-||++.|.+++-.+.-+.+ ..|-+.-.-..+|=|++..|+++
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP 304 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence 344566666667899999999999865554 66777777777888888999987
No 138
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=61.34 E-value=5.2e+02 Score=34.38 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
.+.++..|..+...||+.+|+..|.++.+.-+.. ....+.+.+..+..|+...+..++.|+-..-. ++ ...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-----~n-~~~ 114 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-----GD-ARL 114 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----cc-HHH
Confidence 4568888999999999999999999987765443 67779999999999999999999998865421 11 111
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhh------hcCChHHHHHhccCChhhhhh
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCAL------ATFDRSELEKQVIFSSGFKLF 334 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaL------aS~dR~eLK~kVlds~efr~~ 334 (971)
...+ ..+ ++|.+|+..+-+.. . ..|.+--+|..+|.+ ++.-+.+=-...++ ...
T Consensus 115 ~~~L------a~i--~~~~kA~~~ye~l~-~-------~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~ 174 (987)
T PRK09782 115 ERSL------AAI--PVEVKSVTTVEELL-A-------QQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DAT 174 (987)
T ss_pred HHHH------HHh--ccChhHHHHHHHHH-H-------hCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhh
Confidence 1212 222 99999998877652 1 123333355666665 32222211112222 112
Q ss_pred hccc--hH-HHHHHHHHH--hCCHHHHHHHHHHHHHhcccc-cchHHhHHHHHHH-HHHHHHHHhccc
Q psy11733 335 LELE--PQ-LRDILVQFY--NSKYATCLNLLAQIMDNLLLD-MYIAPHVNTLYTQ-IRNRALIQYFSP 395 (971)
Q Consensus 335 Le~e--P~-lr~lI~aF~--~~~Y~~~l~~L~~~~~~LllD-~yL~~Hv~~L~~~-IR~kaliQYl~P 395 (971)
+... |. ++-.+..+| -.+|...++.|.+....-..+ -++..--. .|.+ +....+..+..|
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~-ay~q~l~~~~a~al~~~ 241 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFD-VLLAGQLDDRLLALQSQ 241 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhhCHHHHHHHhch
Confidence 2222 33 333324444 778888888888876653333 33333333 4444 444555555444
No 139
>KOG1126|consensus
Probab=61.07 E-value=62 Score=40.14 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHH-HHHHhhcHHH
Q psy11733 158 AMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIR-VSVYLQNWSH 236 (971)
Q Consensus 158 ~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIr-v~I~~~dw~~ 236 (971)
.-++.-|-++|-+--.|. =.++-.+|++|-=.+|++.|+||+.|+-.. .++-.---. ++- =.+....++.
T Consensus 403 ~v~Ls~Laq~Li~~~~~s-----PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayT--LlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNS-----PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYT--LLGHESIATEEFDK 473 (638)
T ss_pred hHHHHHHHHHHHhhCCCC-----cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhh--hcCChhhhhHHHHh
Confidence 344555655543322222 235677899999999999999999986433 221110000 000 0122334455
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhc-
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT- 315 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS- 315 (971)
+.++..+|-... + | .=+-+---|+.++-+++|+.|--.|-.+ ++ +.|...++-..+..+-.
T Consensus 474 a~~~fr~Al~~~--~----r----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~~-------INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 474 AMKSFRKALGVD--P----R----HYNAWYGLGTVYLKQEKLEFAEFHFQKA-VE-------INPSNSVILCHIGRIQHQ 535 (638)
T ss_pred HHHHHHhhhcCC--c----h----hhHHHHhhhhheeccchhhHHHHHHHhh-hc-------CCccchhHHhhhhHHHHH
Confidence 555555543221 1 1 1122344577899999999888877766 22 44554433332222221
Q ss_pred CChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHH
Q psy11733 316 FDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRA 388 (971)
Q Consensus 316 ~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~ka 388 (971)
+.+.+---..++-.-........|-+...-.-|...+|.+++..|++++.....+-...--.-.+|+++|..-
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 1121110001110000011111233666667789999999999999999988888777766777777777653
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=60.34 E-value=29 Score=29.59 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 187 LGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 187 Lg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
|...|.+.||+++|++++.++...-+. -....+..-.+....|+|..+...++++-+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788999999999999988776332 3455666677777889999999988887643
No 141
>KOG4234|consensus
Probab=59.01 E-value=1.2e+02 Score=33.06 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchh-hHHHHH-HHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVV-DMCLNV-IRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~i-dm~l~l-Irv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.=|+-++.-|||.+|.+-|.++.+.|.+..... .+|+.- -..-|-++.|..+.+..+||-.+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 458889999999999999999999997765554 344433 33445678999998888887554
No 142
>KOG0553|consensus
Probab=58.71 E-value=59 Score=36.98 Aligned_cols=89 Identities=22% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHH
Q psy11733 187 LGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKV 266 (971)
Q Consensus 187 Lg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~ 266 (971)
-|+=+.+.|+|++|+..|+++..+..+.- + .+-+.-.+..-+|.+..+-+...+|-.+ | +. ..|.++
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--V-yycNRAAAy~~Lg~~~~AVkDce~Al~i-D--p~-------yskay~ 153 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNA--V-YYCNRAAAYSKLGEYEDAVKDCESALSI-D--PH-------YSKAYG 153 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcc--h-HHHHHHHHHHHhcchHHHHHHHHHHHhc-C--hH-------HHHHHH
Confidence 36667788999999999999998864322 2 1224455666678777776666655433 1 11 356677
Q ss_pred HHHHHHhhccCHHHHHHHHhhc
Q psy11733 267 AAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 267 ~~GL~~L~~r~yk~AA~~FLea 288 (971)
--|++++..|+|..|.+.|=.+
T Consensus 154 RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhh
Confidence 7899999999999999997544
No 143
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=57.93 E-value=74 Score=40.53 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++.-+|.++...|++++|.+++.++...- +++ .++.+.+..+....|++..+.+.+.++...- ++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd------- 425 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGN-QGLRIDYASVLQARGWPRAAENELKKAEVLE---PR------- 425 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC-------
Confidence 4567789999999999999999999987653 444 5788888888888899999999999887642 11
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-..+....|+..+..++|.+|-..+=+.
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1347788899999999999988877554
No 144
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.24 E-value=13 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhccc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYC 781 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyc 781 (971)
+++..+|.-|.+.|+.++|.+.|.+..+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999986543
No 145
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=57.06 E-value=15 Score=40.52 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=43.1
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
=|...|.+++..+..|+++.+|+.||+|++-+-+.|..|-..|.|.
T Consensus 5 eR~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~ 50 (256)
T PRK10434 5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVI 50 (256)
T ss_pred HHHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4899999999999999999999999999999999999999999763
No 146
>KOG0543|consensus
Probab=56.14 E-value=55 Score=38.57 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH---HhhhcCC---------CchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRA---RDYCTNG---------KHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~---Rdycts~---------~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
.-|+.|++.|+|..|.+.|.++ .+||.+. .-++-+.+|+-.+.+-++.|..+....+++-.+-..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--- 289 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--- 289 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---
Confidence 4699999999999999999984 4455332 112345667777788889999988888887654321
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+. .+ ---.|-+++..++|..|...|..+
T Consensus 290 --N~---KA--LyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 290 --NV---KA--LYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred --ch---hH--HHHHHHHHHhhccHHHHHHHHHHH
Confidence 11 11 134577889999999999999876
No 147
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=55.98 E-value=63 Score=35.36 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=42.6
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
-|.+.+.+++.-+..++...+|+.||+|..-+.+.|..|-..|.|.
T Consensus 4 ~R~~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 4 ARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4788899999999999999999999999999999999999988875
No 148
>KOG1174|consensus
Probab=55.78 E-value=4.4e+02 Score=31.77 Aligned_cols=198 Identities=15% Similarity=0.166 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---hhcC-----------------CCchhhHHHHHH-----------HHHHHh
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARD---YCTN-----------------GKHVVDMCLNVI-----------RVSVYL 231 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rd---ycts-----------------~~h~idm~l~lI-----------rv~I~~ 231 (971)
-+..+|+.++.+||+.+|.--|++++- |..+ ....++-+|++. .+..+.
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 456789999999999999988877542 1111 111122233332 234566
Q ss_pred hcHHHHHHHHHHHhccCcc--------cC---CCCC----------hhHHH-HHHHHHHHH--HHhhccCHHHHHHHHhh
Q psy11733 232 QNWSHVLSYVNKAEATPDF--------AE---GKDN----------NQAVF-TKLKVAAGL--AELATRKYKTAARFFLQ 287 (971)
Q Consensus 232 ~dw~~V~~~v~KAk~~id~--------~~---d~~r----------~~~l~-~kLk~~~GL--~~L~~r~yk~AA~~FLe 287 (971)
.++..++.+..|+-..-+. |. .-.| .+.+. -+|.||.|| .+|.++++++|--.==+
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 8888999998888654221 00 0011 12233 688999999 56889999887543222
Q ss_pred cccCCCCcccCCChhHHHHHH-HHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHHHH-----HHhCCHHHHHHHHH
Q psy11733 288 AHFDYCDFPELLSPNNIATYG-GLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQ-----FYNSKYATCLNLLA 361 (971)
Q Consensus 288 a~f~~~~~~ells~~Dva~Y~-~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~a-----F~~~~Y~~~l~~L~ 361 (971)
+ ..++. -|...+-..| .+|.--+..|..-|+ ..+ +-|.++|.+...+.. ..+++|......|+
T Consensus 394 ~-~~~~~----~sA~~LtL~g~~V~~~dp~~rEKAKk-f~e-----k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 394 T-IRLFQ----NSARSLTLFGTLVLFPDPRMREKAKK-FAE-----KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred H-HHHhh----cchhhhhhhcceeeccCchhHHHHHH-HHH-----hhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 2 11110 0111121222 122211112322211 111 223446765544332 46888888888888
Q ss_pred HHHHhcccccchHHhHHHHHH--HHHHHHHHHh
Q psy11733 362 QIMDNLLLDMYIAPHVNTLYT--QIRNRALIQY 392 (971)
Q Consensus 362 ~~~~~LllD~yL~~Hv~~L~~--~IR~kaliQY 392 (971)
.+-.++ .|.-|+.|+..++. ++-++++.||
T Consensus 463 ~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 463 KHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 765553 46667777776664 3344555554
No 149
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=55.49 E-value=28 Score=34.78 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
.+|..++.....|=..++...+|+.||+|...+.+-+..|-..|-+..+=-...|...+..|
T Consensus 10 Al~~~i~la~~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 10 GLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 36666777777777789999999999999999999999999999998877777777776655
No 150
>KOG3081|consensus
Probab=55.22 E-value=3.6e+02 Score=30.64 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH
Q psy11733 151 ETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY 230 (971)
Q Consensus 151 e~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~ 230 (971)
.......+..+.+|..++-+..-+. .--.+..-|.+|..-||+++|++...+. .-++.....+.|.+-
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~s----n~i~~l~aa~i~~~~~~~deAl~~~~~~--------~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGS----NLIDLLLAAIIYMHDGDFDEALKALHLG--------ENLEAAALNVQILLK 149 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccch----hHHHHHHhhHHhhcCCChHHHHHHHhcc--------chHHHHHHHHHHHHH
Confidence 3334455566666666654433222 1223555689999999999999987651 113333333333333
Q ss_pred hhcHHHHHHHHHHHhccCc---------------ccC--------------C-CCChhHHHHHHHHHHHHHHhhccCHHH
Q psy11733 231 LQNWSHVLSYVNKAEATPD---------------FAE--------------G-KDNNQAVFTKLKVAAGLAELATRKYKT 280 (971)
Q Consensus 231 ~~dw~~V~~~v~KAk~~id---------------~~~--------------d-~~r~~~l~~kLk~~~GL~~L~~r~yk~ 280 (971)
+...+.+.+.+.+..+.-+ .++ + ..+.|.+.+- .+..+|.+|+|.+
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG----~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNG----QAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHcc----HHHHHHHhcCHHH
Confidence 3344444444443333211 000 0 1122333222 2345889999999
Q ss_pred HHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHH
Q psy11733 281 AARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSEL 321 (971)
Q Consensus 281 AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eL 321 (971)
|-....++--+..++ .++..-.++|++....-.+.
T Consensus 226 Ae~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 226 AESLLEEALDKDAKD------PETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHH
Confidence 888887762121223 34556677777776554333
No 151
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=54.81 E-value=36 Score=28.38 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhccccceec-HHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 378 NTLYTQIRNRALIQYFSPYLSAD-LNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 378 ~~L~~~IR~kaliQYl~PYssV~-L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
..+++.|+...+..-+.+-..+. ...||+.||+|...+.+.|..|-..|-|.
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34556666655554455555555 99999999999999999999999998764
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.15 E-value=96 Score=36.24 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+.-.|+.+.+.||++.|.++|.++.+.. ++..+.+-+...++.+..+++..+...+.++...- ++ ++
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---P~---~~---- 187 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA---PR---HK---- 187 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---CH----
Confidence 35567899999999999999999976543 34444555556788888999999988888776542 11 12
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhh
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQ 287 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLe 287 (971)
.+.-..|..++..|+|..|.+.|-.
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2334667788999999877776544
No 153
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=53.92 E-value=78 Score=39.66 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 181 RRGHDDLGDHYLDCGDLSN----ALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~----Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
-..+..+|..|...|++++ |...|.++.....+ .......+..+....|+|..+...+.++...- ++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~--- 316 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PD--- 316 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---
Confidence 4567779999999999986 78888888776543 34566677777778899999999988887642 11
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++ .+...-|..+...|+|.+|...|-.+
T Consensus 317 ~~----~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 317 LP----YVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred CH----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 22344567778889999998888665
No 154
>KOG1155|consensus
Probab=53.38 E-value=95 Score=37.45 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
|+-=++-+..||+.|.+.+.+++|.|||.++....-+.+ +.++.+-.+.=.+++...+..+..|--...+..+.. .
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~---~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~ 503 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG---SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-D 503 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-c
Confidence 333355688899999999999999999999876543322 455666666666777777777777665543222211 1
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhh
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQ 287 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLe 287 (971)
...+.+++. -+-+....++|+.|..+-..
T Consensus 504 ~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 504 DETIKARLF--LAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred hHHHHHHHH--HHHHHHhhcchHHHHHHHHH
Confidence 123444444 33456677788877665443
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=53.24 E-value=3.3e+02 Score=29.66 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
....-.+.||.-..+.|++.+|...|.+...=- --|--.|++++-+.-+..++.......+++.-...-.....+.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 344557889999999999999999998753211 1233468999999999999999999999988766532221111
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhh
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALA 314 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLa 314 (971)
- ...|=.+..+|+|.+|-+.|=.+ .+. | -.|.-.+.|+...+-.
T Consensus 163 ----~--Ll~aR~laa~g~~a~Aesafe~a-~~~--y---pg~~ar~~Y~e~La~q 206 (251)
T COG4700 163 ----H--LLFARTLAAQGKYADAESAFEVA-ISY--Y---PGPQARIYYAEMLAKQ 206 (251)
T ss_pred ----h--HHHHHHHHhcCCchhHHHHHHHH-HHh--C---CCHHHHHHHHHHHHHh
Confidence 1 23333455788998888887665 232 2 2356678899865433
No 156
>KOG2300|consensus
Probab=52.93 E-value=1.2e+02 Score=36.89 Aligned_cols=145 Identities=17% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhHHHhhC--CHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhc-cCHHHHHHHHHHH----hcCCCh
Q psy11733 748 ESIRRGHDDLGDHYLDCG--DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-QNWSHVLSYVNKA----EATPDF 820 (971)
Q Consensus 748 esIR~g~~dlg~~y~~iG--Dl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~-~D~~~V~~~i~KA----~~~rdf 820 (971)
..+-.|..-+|+||...| ....++||...+...-.+..-..=--|.+=.+-+++ .|..+.++|++|| +++|.|
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f 83 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF 83 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH
Confidence 456678899999999999 999999999998877766554433334444444444 8899999999998 568988
Q ss_pred hhh-hcchhhhhhh---------ccchhHHHHHHHhhcCChhHH--HHHHHHHHHHHHHHHhhhh---cCccceeeccCC
Q psy11733 821 AEV-IFSSGFKLFL---------ELEPQLRDILVQFYNSKYATC--LNLLAQIMALENELMTLIL---DGQIQARIDSHN 885 (971)
Q Consensus 821 ~~v-i~s~~f~~~L---------e~~P~lr~li~sfy~~~Y~~~--~~~L~~imaie~EL~~fI~---~G~L~arID~vn 885 (971)
-.+ .++.+.++-| ..-|-+|..|+-==+--|=+| +--|+++|.||+|+..-+. .|-..
T Consensus 84 ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s------- 156 (629)
T KOG2300|consen 84 YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES------- 156 (629)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-------
Confidence 665 2333333222 122446665553222224433 4456778889998865443 34333
Q ss_pred CeEEecCCCchhHHHHHHHHH
Q psy11733 886 KILYAKQQDQRSTTFEKSLNV 906 (971)
Q Consensus 886 gvl~t~r~D~R~~~y~~~ik~ 906 (971)
.|.....|-+++..
T Consensus 157 -------Ad~~~~~ylr~~ft 170 (629)
T KOG2300|consen 157 -------ADHICFPYLRMLFT 170 (629)
T ss_pred -------cchhhhHHHHHHHH
Confidence 36677777776654
No 157
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.88 E-value=33 Score=36.98 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC--c
Q psy11733 146 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESI-------RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK--H 216 (971)
Q Consensus 146 D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSI-------R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~--h 216 (971)
--+|+=.-..+.+.+..-|...++.|+...-+|+- -..++=+|+.+.+.|++++|.++|+++-..-..+. .
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~ 202 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPK 202 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHH
Confidence 35888888888888999999999888876644322 34566799999999999999999999765443333 5
Q ss_pred hhhHH
Q psy11733 217 VVDMC 221 (971)
Q Consensus 217 ~idm~ 221 (971)
++++.
T Consensus 203 l~~~A 207 (214)
T PF09986_consen 203 LKDMA 207 (214)
T ss_pred HHHHH
Confidence 55553
No 158
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=52.81 E-value=4.4e+02 Score=30.83 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=105.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc--CcccC------------
Q psy11733 187 LGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT--PDFAE------------ 252 (971)
Q Consensus 187 Lg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~--id~~~------------ 252 (971)
.++.+.+.|+++.|...+.++.+.- |++. ++......+.+..|||..+.+.+.+.... .+...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA--PRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4999999999999999999988764 4443 56677788888999999988888877753 11000
Q ss_pred ---------------CCCChhH---HHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhh
Q psy11733 253 ---------------GKDNNQA---VFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALA 314 (971)
Q Consensus 253 ---------------d~~r~~~---l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLa 314 (971)
-|...|. -...+..+.|..++..|++..|.+..-+.--...+.. -.++..+..|+ .+.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~-~~~~~~l~~~~---~l~ 311 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR-AISLPLCLPIP---RLK 311 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc-cchhHHHHHhh---hcC
Confidence 0211111 1346667777788889999888888776521111111 11111111111 111
Q ss_pred cCChHHHHHhccCChhhhhhhc---cch--HHHHHH--HHHHhCCHHHHHHHHHH-HHHhcccccchHHhHHHHHH
Q psy11733 315 TFDRSELEKQVIFSSGFKLFLE---LEP--QLRDIL--VQFYNSKYATCLNLLAQ-IMDNLLLDMYIAPHVNTLYT 382 (971)
Q Consensus 315 S~dR~eLK~kVlds~efr~~Le---~eP--~lr~lI--~aF~~~~Y~~~l~~L~~-~~~~LllD~yL~~Hv~~L~~ 382 (971)
.-+...+.+ .+...+. ..| .+.+.+ -.|...+|....+.|+. ..-....|.....|.-.++.
T Consensus 312 ~~~~~~~~~------~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 312 PEDNEKLEK------LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred CCChHHHHH------HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 122222211 1222232 245 444332 23678899999988884 22233445555557777777
No 159
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=52.59 E-value=3.5e+02 Score=33.90 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+..|.+.|.++|++++|.+.|.++.+.- +-.+-.+|......|++..+.+.+.+....- +. |...+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-----~~--Pd~~T 428 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKN------LISWNALIAGYGNHGRGTKAVEMFERMIAEG-----VA--PNHVT 428 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCC------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC--CCHHH
Confidence 46788999999999999999998875421 2233345555667789999988888765421 11 11122
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
...+..| +...|.+++|.+.|-..
T Consensus 429 ~~~ll~a--~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 429 FLAVLSA--CRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHH--HhcCCcHHHHHHHHHHH
Confidence 2222222 34677888888777664
No 160
>KOG1155|consensus
Probab=52.27 E-value=87 Score=37.73 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hhcCC-Cch
Q psy11733 144 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKES--IRRGHDDLGDHYLDCGDLSNALKCYSRARD---YCTNG-KHV 217 (971)
Q Consensus 144 ~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeS--IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rd---ycts~-~h~ 217 (971)
|-|+-....+-+-- .++.+++..+|-||.- +.-+ --+++..||+.|-+.+|+++|..+|.+..+ .|+.. .+.
T Consensus 429 PnDsRlw~aLG~CY-~kl~~~~eAiKCykra-i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 429 PNDSRLWVALGECY-EKLNRLEEAIKCYKRA-ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred CCchHHHHHHHHHH-HHhccHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 44666666666555 7889999999999962 2222 237899999999999999999999998654 33332 234
Q ss_pred hhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 218 VDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 218 idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
+..++-+-+-.+-.+||..+..|.+++-..
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 455544444445558899888888876543
No 161
>PRK12370 invasion protein regulator; Provisional
Probab=52.24 E-value=5.3e+02 Score=31.59 Aligned_cols=96 Identities=9% Similarity=-0.092 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
--.++..+|..+...|++++|.++|.++.+...+. .+....+-.+....|++..+...+.++..+--. + +.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~----~~ 407 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--R----AA 407 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--C----hh
Confidence 34578889999999999999999999998876543 345556666777889999999999998765211 1 11
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. ....+..++..|+|.+|...|-.+
T Consensus 408 --~--~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 408 --A--GITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred --h--HHHHHHHHHhccCHHHHHHHHHHH
Confidence 0 111232355578999998887665
No 162
>PLN03077 Protein ECB2; Provisional
Probab=52.21 E-value=4.6e+02 Score=33.79 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRA 207 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~ 207 (971)
.|-+.|.++|++++|.+.|..+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc
Confidence 3445555555555555555443
No 163
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.15 E-value=22 Score=23.52 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=24.9
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDY 780 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdy 780 (971)
.++..+|..|...|+.+.|.++|.++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999987653
No 164
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.10 E-value=25 Score=23.17 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARD 209 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rd 209 (971)
.++..+|..|...|+++.|..+|.+...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3577899999999999999999987654
No 165
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.07 E-value=1.4e+02 Score=33.17 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
++.+--.+|.-+|.+|-..|+.+.|-+.|.++...-...+.+++- ++..-++ .|.+........+|-..+.=+.
T Consensus 64 ~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN-YG~FLC~--qg~~~eA~q~F~~Al~~P~Y~~--- 137 (250)
T COG3063 64 HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-YGAFLCA--QGRPEEAMQQFERALADPAYGE--- 137 (250)
T ss_pred hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh-hhHHHHh--CCChHHHHHHHHHHHhCCCCCC---
Confidence 455666788888999999999999999999888777777777765 3444344 5678888888888766543222
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..-..=.|+..|..|++..|-..|-.+
T Consensus 138 -----~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 138 -----PSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred -----cchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 1122233577778888888887777654
No 166
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=51.72 E-value=15 Score=38.72 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCce
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQI 428 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL 428 (971)
|.+.|..++.-+..+++..+|+.||+|.+.+-+.|..|-..|.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 88899999999999999999999999999999999999888865
No 167
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=51.71 E-value=17 Score=34.22 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.2
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
.=|.++.+++.|+++.+.+++.|-.|+.+|.|-..||-
T Consensus 64 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 64 EGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 35899999999999999999999999999999888883
No 168
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.31 E-value=2e+02 Score=31.12 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHH
Q psy11733 156 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWS 235 (971)
Q Consensus 156 ~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~ 235 (971)
++...++++.. .|.-...=-.|-+.+|+-+.++|+++.|...+.....+.....-+-=.-+.+-||-+..+.++
T Consensus 70 ~~~~~~ekf~~------~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQ------ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHh------hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555555655 365556677889999999999999999999998877766543322223456667777888888
Q ss_pred HHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 236 HVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 236 ~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..++.+.-.. +.+|. +++-...|=.++..|+=..|...+=.+
T Consensus 144 ~AL~~L~t~~-----~~~w~------~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 144 AALKTLDTIK-----EESWA------AIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHHhccc-----cccHH------HHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 8776655322 23452 355566777788888877777766554
No 169
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=50.98 E-value=21 Score=39.42 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
-|.+.|.+++.....|+++.+|+.||+|+.-+-+.|..|=..|.|.
T Consensus 5 eR~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 5 ERHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 4899999999999999999999999999999999999999998874
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=50.91 E-value=2.3e+02 Score=36.36 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hh--hHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCC
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VV--DMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~i--dm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
.-.++..+|..++..|+++.|...+.+..+.+...+. .. -+....-.+....|+|..+...+.++-......++
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~- 608 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP- 608 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-
Confidence 3345667777778888888888877777666543221 11 11222333445567777777777766554332211
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.. ........|..++..|++..|...+-.+
T Consensus 609 --~~--~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 609 --QQ--QLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred --hH--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01 1122233455666778887777766544
No 171
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=50.80 E-value=36 Score=36.20 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 376 HVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 376 Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
-.+..|+.||..++..-+.|=..++-..+|+.||+|...|-.-|..|..+|-|.- -+..|+.+.
T Consensus 8 ~~~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~ 71 (224)
T PRK11534 8 TALDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTV--VNQKGYRVA 71 (224)
T ss_pred hhHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEE--eCCCceEeC
Confidence 3578999999999999999999999999999999999999999999999998864 345565554
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=50.54 E-value=1.9e+02 Score=29.57 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY 230 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~ 230 (971)
--..+.++||.-|++.|++..|+..|.++...-.+... +|-.+-++-++-+
T Consensus 45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 34566777777777777777777777776666544432 4544444444433
No 173
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.36 E-value=47 Score=35.89 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCch--hH
Q psy11733 717 PLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESI-------RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK--HV 787 (971)
Q Consensus 717 ~~wve~~~~~n~~el~kLe~eLk~~k~NlikesI-------R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~g--h~ 787 (971)
-+|+=......+.|..=|...++.|++..-.|+- -..+.-+|+.+.+.|+.++|.+.|++....-..+. ..
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l 203 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKL 203 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHH
Confidence 4577666666778888888888888865543322 23455799999999999999999999976555555 88
Q ss_pred HHHHHHH
Q psy11733 788 VDMCLNV 794 (971)
Q Consensus 788 IDm~l~l 794 (971)
+|+....
T Consensus 204 ~~~AR~~ 210 (214)
T PF09986_consen 204 KDMARDQ 210 (214)
T ss_pred HHHHHHH
Confidence 8876554
No 174
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.34 E-value=58 Score=32.44 Aligned_cols=67 Identities=10% Similarity=-0.007 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
+.-..++..+|..+...|++++|..+|.++....+. -.+..+++-.+....|++..+.+.+.++-..
T Consensus 55 P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 55 PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667889999999999999999999998876542 3467777777788889999999999988654
No 175
>KOG1498|consensus
Probab=49.44 E-value=1.6e+02 Score=34.98 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=55.0
Q ss_pred HHHHHHhhhhhHHHHHHHH--HHhhhHHHhhCCHHHHHHHHHHh--hccc-CCchhHHHHHHHHHHHHHhccCHHHHHHH
Q psy11733 736 NDLKNYKSNSIKESIRRGH--DDLGDHYLDCGDLSNALKCYSRA--RDYC-TNGKHVVDMCLNVIRVSVYLQNWSHVLSY 810 (971)
Q Consensus 736 ~eLk~~k~NlikesIR~g~--~dlg~~y~~iGDl~~Alkay~r~--rdyc-ts~gh~IDm~l~lIRV~if~~D~~~V~~~ 810 (971)
.-|+...++-|-.||-++. ..|+.-+...||..+|....-.. --|. .-..-++...|--+|+++-.+||...+-.
T Consensus 114 ~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~ 193 (439)
T KOG1498|consen 114 ETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQII 193 (439)
T ss_pred HHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444554545555544 46788888889999887665443 1222 23457899999999999999999988777
Q ss_pred HHHHh
Q psy11733 811 VNKAE 815 (971)
Q Consensus 811 i~KA~ 815 (971)
..|..
T Consensus 194 skKI~ 198 (439)
T KOG1498|consen 194 SKKIN 198 (439)
T ss_pred HHHhh
Confidence 66653
No 176
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=48.85 E-value=23 Score=39.40 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.-|...|.+++.....|++..+|+.||+|..-+-+.|..|=..|.+.
T Consensus 16 ~eR~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 45889999999999999999999999999999999999998888875
No 177
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=48.84 E-value=57 Score=39.15 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=10.5
Q ss_pred HHHHHHhccceecc
Q psy11733 470 LRSAMIKHNICVKD 483 (971)
Q Consensus 470 lR~~~l~a~l~v~~ 483 (971)
.|..+++.+|.|.+
T Consensus 320 ~r~~L~~r~VlvVP 333 (453)
T PLN03098 320 YRTELLKRGVLLIP 333 (453)
T ss_pred HHHHHHHcCcEEEE
Confidence 47788888888754
No 178
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=48.83 E-value=1.1e+02 Score=38.21 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
+--.++..+|..+...|++++|..+|.++...... + .+...++-.+....|+|..+...+.++-.. .++ .
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~---~- 351 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--L-PYVRAMYARALRQVGQYTAASDEFVQLARE---KGV---T- 351 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc---c-
Confidence 33467889999999999999999999998876433 2 345556666777789999999888776543 111 0
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..+...|++++|...|-.+
T Consensus 352 ---~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 352 ---SKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112233466778899999999998765
No 179
>KOG2003|consensus
Probab=48.43 E-value=92 Score=37.29 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.+-+||++|-+-||.+.|+.|++....|-++. ++..--+-.-.|..+=|....+|++||--+.-. ..++
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~n---ie~iewl~ayyidtqf~ekai~y~ekaaliqp~--------~~kw 662 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN---IETIEWLAAYYIDTQFSEKAINYFEKAALIQPN--------QSKW 662 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc--------HHHH
Confidence 36689999999999999999998876665433 333322334467778899999999998644321 2245
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++-+++- .=..|+|..|.+++-++
T Consensus 663 qlmiasc--~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 663 QLMIASC--FRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHH--HHhcccHHHHHHHHHHH
Confidence 5555443 23689999999998876
No 180
>PRK11189 lipoprotein NlpI; Provisional
Probab=48.27 E-value=1.5e+02 Score=33.16 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
--.++..+|..|...|+++.|.++|.++.+.-+. + ....+++-.+....|+|..+...+.++-..- ++ ++.
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~---~~~ 167 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--Y-NYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PN---DPY 167 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---CHH
Confidence 3568999999999999999999999998776433 2 3455666666677899999999999886531 11 111
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+ -++. .+ ....+++.+|...|-..
T Consensus 168 -~-~~~~--~l-~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 168 -R-ALWL--YL-AESKLDPKQAKENLKQR 191 (296)
T ss_pred -H-HHHH--HH-HHccCCHHHHHHHHHHH
Confidence 0 1111 11 23467899999998654
No 181
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.97 E-value=78 Score=29.96 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHH--HHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHH
Q psy11733 721 ETKNKKAAMKLEKLDNDLKNYKSNSI-----KESIRR--GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLN 793 (971)
Q Consensus 721 e~~~~~n~~el~kLe~eLk~~k~Nli-----kesIR~--g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~ 793 (971)
+.+.++.+.=++.|+..|+..+.-.+ +.-+.| .+.+=|.||+.-||.-+|+.|.+=+.- -|| .
T Consensus 4 ~~l~ekiekYi~~leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g-------~lD---a 73 (90)
T COG1849 4 EELAEKIEKYIELLEEALKEIKSRPGDRSAAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAHG-------WLD---A 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HHH---H
Confidence 45667777788888899988886666 444554 466778999999999999998774421 122 3
Q ss_pred HHHHHHhccCHH
Q psy11733 794 VIRVSVYLQNWS 805 (971)
Q Consensus 794 lIRV~if~~D~~ 805 (971)
..|+|+|-..|+
T Consensus 74 g~~lGv~d~~~~ 85 (90)
T COG1849 74 GVRLGVFDVPED 85 (90)
T ss_pred HHHhccCCCCcc
Confidence 456677665554
No 182
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=47.69 E-value=21 Score=35.90 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy11733 142 IPTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHY 191 (971)
Q Consensus 142 ~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y 191 (971)
....|++.+..++.++.++++.|+. +..|+.++.++++++|+|.
T Consensus 90 ~~~~~~ev~~~l~~dk~~nl~~L~~------~h~it~e~id~LY~~akfq 133 (133)
T PF09440_consen 90 ELLEDPEVVKNLRSDKKQNLEYLEE------NHGITPEMIDALYKYAKFQ 133 (133)
T ss_pred HHHcCHHHHHHHHccHHHHHHHHHH------hcCCCHHHHHHHHHHhCcC
Confidence 4667899999999999999999986 5789999999999999873
No 183
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=47.56 E-value=36 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCce
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQI 428 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL 428 (971)
.+..++.--..++...+|+.+|+|...+-+-|-.|+..|-|
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCc
Confidence 34456666777999999999999999999999999999866
No 184
>KOG3785|consensus
Probab=47.41 E-value=54 Score=38.19 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=50.9
Q ss_pred hhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy11733 172 KSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 244 (971)
Q Consensus 172 k~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KA 244 (971)
|.|..+|+--....-+|.-++..|||++|+..|+-+-+..+.++ . +..++-=+.+++|.+..+++...||
T Consensus 48 k~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~-e--l~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 48 KLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA-E--LGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc-c--cchhHHHHHHHHHHHHHHHHHHhhC
Confidence 34788777667777899999999999999999998876544333 2 3334444567778888777766665
No 185
>KOG2002|consensus
Probab=47.30 E-value=6.2e+02 Score=33.42 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
..+.+|..+-..++++.|.+.|..+..+|+ ..||..+.+.-++...++...+...+..+-...+..+
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp---~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np---------- 564 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHP---GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP---------- 564 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCc---hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc----------
Confidence 368899999999999999999999988886 3889999888788888888888888887765543322
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-.+.+-|-.+|....|+.|-..|--.
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHH
Confidence 23467787788888998888877643
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=47.28 E-value=95 Score=38.03 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 746 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 746 ikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
.....-.++.-+|.||-.+|+.+.|++...++.+.+.|. +|..+..-||--..||.......++.|..
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345566788999999999999999999999999998774 89999999999999999999999999987
No 187
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=47.21 E-value=58 Score=36.41 Aligned_cols=173 Identities=13% Similarity=0.062 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCT-NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct-s~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
-.++..+|..|++.|++++|..++.+..+... .+...+...|++.++.+..|++..+...+.++...-... .+ ..
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~-~~---~~ 223 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES-DP---AL 223 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC-Ch---HH
Confidence 45788899999999999999999999776553 234445667788889999999999999999874321111 11 10
Q ss_pred HH-HH-HHHHHHHH---HhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhc---cCChhh
Q psy11733 260 VF-TK-LKVAAGLA---ELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQV---IFSSGF 331 (971)
Q Consensus 260 l~-~k-Lk~~~GL~---~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kV---lds~ef 331 (971)
.. +. .....+.. .-....|+.++...... ++ .+.....++ ..+.+.+...+..+....+ ....+-
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~-~~----~~~~~~~~~--~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH-FP----DHGLAFNDL--HAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh-cC----cccchHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 01 11 11111110 01113455444443222 11 134444443 4556666665544333211 010000
Q ss_pred ---hhhh--ccchHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy11733 332 ---KLFL--ELEPQLRDILVQFYNSKYATCLNLLAQIM 364 (971)
Q Consensus 332 ---r~~L--e~eP~lr~lI~aF~~~~Y~~~l~~L~~~~ 364 (971)
.... ...-.+-..+-.|-.++|..+++.|....
T Consensus 297 ~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 297 ADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111 11222455667788999999999888754
No 188
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=46.88 E-value=21 Score=39.18 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEE
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILY 440 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~ 440 (971)
+=|...|.+++..+..|++..+|+.||+|++-+-+.|..|= +.+ + .+.|.+.
T Consensus 6 ~eR~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le--~~~--~--~~gGa~~ 57 (252)
T PRK10681 6 DERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS--APV--V--LLGGYIV 57 (252)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh--cCe--E--EECCEEE
Confidence 34899999999999999999999999999999999999744 332 2 4666553
No 189
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=46.30 E-value=1.9e+02 Score=31.02 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+..++.||..++..-+.|=..+ +-..||+.||+|-..+-.-|..|-..|-|. +-+..|+.+..
T Consensus 8 ~~~v~~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~--~~~~~G~~V~~ 72 (235)
T TIGR02812 8 AGFAEEYIVESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLT--IQHGKPTKVNN 72 (235)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EeCCCccEecC
Confidence 45788999999999999999999 899999999999999999999999999886 44456777765
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=46.00 E-value=1e+02 Score=30.10 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id 249 (971)
...+...+++++...|+++.|.+.+.++....+.. -.++..+|++....|+...+.....+.+..+.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYD---EEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 45577889999999999999999999976665432 36788899999999999999999999987654
No 191
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=45.96 E-value=28 Score=38.38 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=42.9
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
=|...|..++.-...+++..+|+.|++|.+.+-+.|..|-..|.|.
T Consensus 5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 5 QRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 4888889999999999999999999999999999999999999874
No 192
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=45.91 E-value=29 Score=38.18 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
=|.+.+..++.....+++..+|+.||+|..-+.++|..|-..|.|.
T Consensus 5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 5 QRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3778889999999999999999999999999999999998888774
No 193
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=45.53 E-value=52 Score=34.54 Aligned_cols=64 Identities=8% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+|+.||.+++..-+.|=..++-..+|+.||+|...|-.-|..|-.+|-|.- -...|+.+..
T Consensus 13 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~--~~~~G~~V~~ 76 (212)
T TIGR03338 13 TTLVQDEIERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRN--EKNRGVFVRE 76 (212)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 467899999999999999999999999999999999999999999999998854 4556777765
No 194
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.46 E-value=1.2e+02 Score=31.14 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH
Q psy11733 177 KESIRRGHDDLGDHYLDCG-DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY 230 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iG-Dl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~ 230 (971)
+|.--+....+|+-+...| +..+|..+|.++.-.|..|+..+.++=..+--.|+
T Consensus 86 ~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~tlP~~Vf 140 (148)
T TIGR00985 86 KEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQTLPEPIF 140 (148)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHhhCCHHHH
Confidence 4556667778999999999 99999999999999999998877765544433333
No 195
>KOG2076|consensus
Probab=45.35 E-value=5.6e+02 Score=33.42 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+++-||..|-+.||.++|+.+.-.+-..- ++.. ++...+-..+..+++|..+.-+.+||-+.- +..|. .+-.
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~---~~~e 246 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDY-ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWE---LIYE 246 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchH---HHHH
Confidence 68999999999999999998877665443 2333 888888888889999999999999987653 22332 1112
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
|.. .+-..|+++.|+..|+..
T Consensus 247 rs~-----L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 247 RSS-----LYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHH-----HHHHhChHHHHHHHHHHH
Confidence 222 233457777888887775
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.15 E-value=74 Score=35.65 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=58.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHH
Q psy11733 165 DNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA-RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNK 243 (971)
Q Consensus 165 e~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~-Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~K 243 (971)
..=++.|=++.. +-.+++=||+-+|..|||++|.+.|.++ ++|=.+ ..-=|++|.+-.+...++|-+.+...+..
T Consensus 165 ~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 165 QAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 333445544433 5678999999999999999999999986 555433 33448888888888889999988888877
Q ss_pred Hhc
Q psy11733 244 AEA 246 (971)
Q Consensus 244 Ak~ 246 (971)
+-.
T Consensus 241 v~k 243 (262)
T COG1729 241 VIK 243 (262)
T ss_pred HHH
Confidence 644
No 197
>KOG1585|consensus
Probab=44.41 E-value=5.2e+02 Score=29.26 Aligned_cols=192 Identities=16% Similarity=0.122 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhhcCCCchhhHHHHHHHHHHHhhcHHHHH
Q psy11733 162 EKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA---RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVL 238 (971)
Q Consensus 162 e~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~---Rdycts~~h~idm~l~lIrv~I~~~dw~~V~ 238 (971)
+-|....+.|++|---=---.+++.-|...-++..++++...|.++ ..-|.+++ -..|-+..-.=.++--+=+.+.
T Consensus 52 dcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-tAAmaleKAak~lenv~Pd~Al 130 (308)
T KOG1585|consen 52 DCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-TAAMALEKAAKALENVKPDDAL 130 (308)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhhcCCHHHHH
Confidence 3677778888887652222333444445555555677777777774 33344443 3456666666666666777777
Q ss_pred HHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCCh
Q psy11733 239 SYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDR 318 (971)
Q Consensus 239 ~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR 318 (971)
....++-.+.+..+ |.+.--..+ -..|..+..-++|.+|+..|+.-.. -+.+.-++++..+-.+-.-|+-+.+
T Consensus 131 qlYqralavve~~d---r~~ma~el~-gk~sr~lVrl~kf~Eaa~a~lKe~~---~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 131 QLYQRALAVVEEDD---RDQMAFELY-GKCSRVLVRLEKFTEAATAFLKEGV---AADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred HHHHHHHHHHhccc---hHHHHHHHH-HHhhhHhhhhHHhhHHHHHHHHhhh---HHHHHhhcccHHHHHHHHHHHHhhH
Confidence 77777766655432 211101111 1122334567889999999986310 0112223333333233333444566
Q ss_pred HHHHH--h-ccCChhhhhhhccc--hHHHHHHHHHHhCCHHHHHHHHH
Q psy11733 319 SELEK--Q-VIFSSGFKLFLELE--PQLRDILVQFYNSKYATCLNLLA 361 (971)
Q Consensus 319 ~eLK~--k-Vlds~efr~~Le~e--P~lr~lI~aF~~~~Y~~~l~~L~ 361 (971)
.+.+. + +=++...-.|...+ -.+..+++.|-..+-..+.+.|.
T Consensus 204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 65543 2 22333444555433 33788999999999888777665
No 198
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.13 E-value=32 Score=34.17 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH
Q psy11733 146 DPLLIETKNKKAAMKLEK----LDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 221 (971)
Q Consensus 146 D~~wie~~~~~n~~~le~----Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~ 221 (971)
|+++=..++++.+++... -...+.+-.+..-+|..-+-...+|+-+...|++.+|..++.++.-.|..+...+.++
T Consensus 24 dP~frkkL~~rrk~~~~~~~~~~~~~~~~~~d~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 24 DPDFRKKLRERRKKQAKAQEQAKSEKLPDPNDPEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp -------------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhcccccCcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 455655555444333332 1111222223344566777788999999999999999999999999999988777665
Q ss_pred HHH
Q psy11733 222 LNV 224 (971)
Q Consensus 222 l~l 224 (971)
-..
T Consensus 104 q~t 106 (121)
T PF02064_consen 104 QKT 106 (121)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 199
>KOG0396|consensus
Probab=43.92 E-value=3.6e+02 Score=31.79 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHhhhcCCCchhhHHHH--HHHH
Q psy11733 153 KNKKAAMKLEKLDNDLKNYK-SNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSR--ARDYCTNGKHVVDMCLN--VIRV 227 (971)
Q Consensus 153 ~~~~n~~~le~Le~eLk~yk-~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r--~Rdycts~~h~idm~l~--lIrv 227 (971)
..+.-+..++.++.|++.-. .|..+=+.-.-..=+++|+.++|-++.|.....+ +.++.- +|++.. .|+-
T Consensus 87 ~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD-----~Dv~~~~~~I~~ 161 (389)
T KOG0396|consen 87 QLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVD-----SDVYKRAYGIRD 161 (389)
T ss_pred HHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHh-----HHHHHHHHHHHH
Confidence 33445556666666554444 3444333333344479999999999988877754 345431 345443 4777
Q ss_pred HHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 228 SVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 228 ~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
+|..|+...+++....=+..+.+.+ -.+-..++...-+-.+..++|.+|..++=
T Consensus 162 sll~~~l~~~Lswc~ehk~~LkK~~-----S~lEf~lRlQefIELi~~~~~~~Ai~~ak 215 (389)
T KOG0396|consen 162 SLLAGELEPALSWCKEHKVELKKEE-----SSLEFQLRLQEFIELIKVDNYDKAIAFAK 215 (389)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcc-----chhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8899999999888876665554332 12345566667777888889999877653
No 200
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=43.75 E-value=77 Score=30.12 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
...+..+|..|+..|++..|.++|.+....... ..+....+-.+....|+|..+...+.++-..
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355677888999999999999888887655322 2344455555666778888888888777654
No 201
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=43.56 E-value=72 Score=34.74 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
.+.+|+.||.+++..-+.|=..+ +-..||+.||||...+-.-|..|-..|-|.- ....|+.+...
T Consensus 11 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~--~~~~G~~V~~~ 76 (257)
T PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEV--RRGAGIYVLDS 76 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE--ecCCEEEEeCC
Confidence 57899999999999999999999 6999999999999999999999999998863 34567777653
No 202
>PRK03837 transcriptional regulator NanR; Provisional
Probab=42.50 E-value=60 Score=34.78 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+++.||.+++...+.|=..+ +...+|+.||||...+-+-|..|=..|-|.-+ ...|+.+..
T Consensus 15 ~~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~--~~~G~~V~~ 79 (241)
T PRK03837 15 SEEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQIS--HGERARVSR 79 (241)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCCceeEec
Confidence 46899999999999999999999 89999999999999999999999999987654 555776654
No 203
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=42.31 E-value=2.5e+02 Score=31.23 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhcC
Q psy11733 177 KESIRRGHDDLGDHYLDCG-DLSNALKCYSRARDYCTN 213 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iG-Dl~~Alk~y~r~Rdycts 213 (971)
-+++-+..+..|.-.++.+ ++++|.+++.+..++|..
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 4678889999999999999 999999999999999744
No 204
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=42.19 E-value=7.9 Score=37.52 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEc
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARID 433 (971)
+..|..++.|++.|=..=.|+.++-+..=-...||+.|+.|...|+|.++||
T Consensus 31 ee~~~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~ 82 (107)
T PF01984_consen 31 EEQRRAILRQILTPEARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKID 82 (107)
T ss_dssp HHCCHHHHHTCB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556778899999988888888886654445689999999999999999987
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=41.55 E-value=1.1e+02 Score=36.71 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH-HHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC-LNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~-l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+.-.|+++...||.++|+++|.++-+-...-++.-.+| |.+.=..+..+||..+..+..++... ..|.+ +
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~----s~WSk-----a 340 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE----SKWSK-----A 340 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----cccHH-----H
Confidence 56689999999999999999998665444445544444 34444567889999999999887652 35643 3
Q ss_pred HHHHHHHHHHhhccCH-------HHHHHHHhhcc
Q psy11733 263 KLKVAAGLAELATRKY-------KTAARFFLQAH 289 (971)
Q Consensus 263 kLk~~~GL~~L~~r~y-------k~AA~~FLea~ 289 (971)
-..-..|..++..++. ++|.++|-+++
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3444556666777777 88888888763
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=41.44 E-value=40 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=30.0
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHH
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC 791 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~ 791 (971)
..+..+|..|.+.|++++|.++|.++.+.+.+. ....+.
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~ 68 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARAL 68 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHH
Confidence 466788999999999999999999998888754 334443
No 207
>KOG1126|consensus
Probab=41.43 E-value=50 Score=40.93 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|+-|++.++|.+|.++|..+|+.-.--=+-+|++ -..++.-.=.+.+.++ |+.+++...+ .
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy----ST~LWHLq~~v~Ls~L--aq~Li~~~~~-------s 420 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY----STTLWHLQDEVALSYL--AQDLIDTDPN-------S 420 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH----HHHHHHHHhhHHHHHH--HHHHHhhCCC-------C
Confidence 5677899999999999999999999887643222223321 1111111112223333 3455544332 2
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhcc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQAH 289 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea~ 289 (971)
+.-||+.|=.+=.||++.+|.++|--+.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAi 448 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAI 448 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhh
Confidence 3457888876667999999999998653
No 208
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=41.24 E-value=49 Score=29.17 Aligned_cols=43 Identities=7% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHhccccce--ecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 388 ALIQYFSPYLS--ADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 388 aliQYl~PYss--V~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
.+.+++.-... ++...+|+.+|++...+.+-|..|...|.+..
T Consensus 10 ~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 10 KILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44556665555 99999999999999999999999999998754
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=41.23 E-value=43 Score=28.08 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=34.7
Q ss_pred HhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 762 LDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 762 ~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
.+-|+.++|++.|.++.+.... -.++.+.+.++.+..|++......+.++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3557778888888887665443 345566777777777777777777766543
No 210
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=41.01 E-value=68 Score=26.63 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=39.3
Q ss_pred HhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 391 QYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 391 QYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
.++.-+..+++..+|+.++++...+-+.+.+|+..|-|.-..|..++
T Consensus 10 ~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 10 RILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 33445666999999999999999999999999999999888887664
No 211
>KOG1173|consensus
Probab=40.88 E-value=1.3e+02 Score=37.14 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHH-HHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVS-VYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~-I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
.--.++..|-||+.+|.+++|-++|++. |+.+...--.|--..-+ -..+..+.+.+-+.+|-.+.... . -|
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKa----t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-h---lP 382 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKA----TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-H---LP 382 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHH----hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-c---ch
Confidence 3346788999999999999998888864 33222222222111111 13466777777777777766432 1 13
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..|-|+-++..++++.|-+.|.++
T Consensus 383 ------~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 383 ------SLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred ------HHHHHHHHHHhccHHHHHHHHHHH
Confidence 378899999999999999999887
No 212
>KOG0276|consensus
Probab=40.64 E-value=3.4e+02 Score=34.07 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
.-+++.|+.+.|-++.|+ +.|+++.|++++.+ ..|+...+.+...++.+. .-|
T Consensus 617 rt~va~Fle~~g~~e~AL-------~~s~D~d~rFelal-------~lgrl~iA~~la~e~~s~----~Kw--------- 669 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQAL-------ELSTDPDQRFELAL-------KLGRLDIAFDLAVEANSE----VKW--------- 669 (794)
T ss_pred hhhHHhHhhhccchHhhh-------hcCCChhhhhhhhh-------hcCcHHHHHHHHHhhcch----HHH---------
Confidence 446788888888887775 57899999987654 445544444433333211 112
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHH
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRD 343 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~ 343 (971)
-.-|=+.|..+++..|.++|..+. + +.. +.|..-++.+++-|...- +..++ +...=..
T Consensus 670 --~~Lg~~al~~~~l~lA~EC~~~a~-d---~~~----------LlLl~t~~g~~~~l~~la---~~~~~---~g~~N~A 727 (794)
T KOG0276|consen 670 --RQLGDAALSAGELPLASECFLRAR-D---LGS----------LLLLYTSSGNAEGLAVLA---SLAKK---QGKNNLA 727 (794)
T ss_pred --HHHHHHHhhcccchhHHHHHHhhc-c---hhh----------hhhhhhhcCChhHHHHHH---HHHHh---hcccchH
Confidence 123445688999999999999873 2 111 112233344454443210 00000 1111234
Q ss_pred HHHHHHhCCHHHHHHHHHHH----HHhcccccchHHhHHHHHHHHHHHHH
Q psy11733 344 ILVQFYNSKYATCLNLLAQI----MDNLLLDMYIAPHVNTLYTQIRNRAL 389 (971)
Q Consensus 344 lI~aF~~~~Y~~~l~~L~~~----~~~LllD~yL~~Hv~~L~~~IR~kal 389 (971)
++..|..++|..|+++|.+- +..++.--|+-..|..++..-|....
T Consensus 728 F~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~ 777 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLS 777 (794)
T ss_pred HHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhh
Confidence 56779999999999999875 45566677777778888887777655
No 213
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=39.94 E-value=4.8e+02 Score=32.73 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
+..|.+.|.++|++++|.+.|.++.+.. +-.+-.+|......|++..+...+.+.+.
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~------~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKT------TVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCC------hhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566777777777777777777764421 12333455566666777777777766543
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=39.60 E-value=23 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALK 202 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk 202 (971)
--++++.||.+|+..||+++|.+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 34689999999999999999863
No 215
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=39.48 E-value=97 Score=35.79 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..|...|++++|+..+.++.+.... .....+.+-.+...+|+|..+...+.++..+
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999887543 2345566666777889999999999988764
No 216
>KOG2076|consensus
Probab=39.39 E-value=2.3e+02 Score=36.76 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 174 NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 174 NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
|..-++...-+.++++.|.++|.|.+|++.|..+..-- .-+...+.+.+-++...++.+.++.....|+-.+....-
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~- 483 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL- 483 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch-
Confidence 44456677779999999999999999999999875432 223367778888888899999999999999865432211
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhh
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQ 287 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLe 287 (971)
=+|++.++= +-.+|+..+|.+..-.
T Consensus 484 -------D~Ri~Lasl--~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 484 -------DARITLASL--YQQLGNHEKALETLEQ 508 (895)
T ss_pred -------hhhhhHHHH--HHhcCCHHHHHHHHhc
Confidence 134444332 4467888887776544
No 217
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=38.67 E-value=1.8e+02 Score=38.43 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..+.+.|++++|.++|.++........ +...++-.+-...|++..+.+.+.+|-..- ++ +
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---P~---~---- 676 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---NYQAALGYALWDSGDIAQSREMLERAHKGL---PD---D---- 676 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC---C----
Confidence 4567788888888888888888888766643322 344444445556678888877777775431 11 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+...-|..++..|++..|...|-.+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 234456677888999999998888766
No 218
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=38.33 E-value=83 Score=25.44 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCce
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQI 428 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL 428 (971)
.|.+++..... ...+...+|+.||++...+-.-|..|...|-+
T Consensus 3 ~R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV 45 (47)
T PF01022_consen 3 TRLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAGLV 45 (47)
T ss_dssp HHHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCcCe
Confidence 46666665555 78899999999999999999999999998865
No 219
>KOG3431|consensus
Probab=38.22 E-value=24 Score=34.89 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEc
Q psy11733 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARID 433 (971)
-+++|.-+|.|++.|=-.-.|+.+|=.=-=-...+|..|.+|+.-|.|..||+
T Consensus 38 q~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kis 90 (129)
T KOG3431|consen 38 QEEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKIS 90 (129)
T ss_pred HHHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999988888888874322224579999999999999998886
No 220
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=38.17 E-value=2.7e+02 Score=33.77 Aligned_cols=111 Identities=9% Similarity=0.029 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-H-------------hh
Q psy11733 146 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSI-KESIRRGHDDLGDHYLDCGDLSNALKCYSRA-R-------------DY 210 (971)
Q Consensus 146 D~~wie~~~~~n~~~le~Le~eLk~yk~Nli-KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~-R-------------dy 210 (971)
|-.|...+.-+-.-+..+....++-+++-+- ++.-+-....+|+-|.+.|++.+|.+.+.+. + .-
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 4578888877777777777666666665332 3444667788999999999999999987652 1 12
Q ss_pred hcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccC-CCCC
Q psy11733 211 CTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE-GKDN 256 (971)
Q Consensus 211 cts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~-d~~r 256 (971)
|...+.........-+...+.|+|..+...+.+|++....+. +|.|
T Consensus 418 y~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR 464 (484)
T COG4783 418 YAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWAR 464 (484)
T ss_pred HHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence 223345555566666677788999999999999988765432 5655
No 221
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.01 E-value=34 Score=28.03 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARD 209 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rd 209 (971)
.++||+-|.+.||++.|.+.+..+..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999999999998887653
No 222
>KOG4626|consensus
Probab=37.81 E-value=1.6e+02 Score=36.88 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccC-cccCCCCChhH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP-DFAEGKDNNQA 259 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~i-d~~~d~~r~~~ 259 (971)
-+++..+|.-+-+.|+..+|..||.+...+|.+ ..|..-++-.+.-+++.++.+.....+|-... +.+..
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa------ 390 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA------ 390 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh------
Confidence 356777777777777777888888777777753 33444555555556677777766666665432 21110
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+-| |..+=.+|++++|..++=++
T Consensus 391 -~nNL----a~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 391 -HNNL----ASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred -hhhH----HHHHHhcccHHHHHHHHHHH
Confidence 0111 22344688888888887664
No 223
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=37.73 E-value=94 Score=28.13 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
.+++..+|+.+|+|+..+++-+..|-..|-|..+=-...|..-+..|
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~ 71 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPP 71 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-C
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCH
Confidence 39999999999999999999999999999886654333444444444
No 224
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=37.54 E-value=1.6e+02 Score=29.61 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=42.9
Q ss_pred HHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 750 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 750 IR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
-...+.-+|..+...|+.++|+.+|.++......+........++-.+....+++.....+..+|-.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677777777788888888888887655433222333455555556666777776666666654
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=37.19 E-value=44 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYS 205 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~ 205 (971)
++..+|..+...||.++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999988764
No 226
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.12 E-value=58 Score=32.34 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=44.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHH
Q psy11733 739 KNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNV 794 (971)
Q Consensus 739 k~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~l 794 (971)
.+..+..-.|..=+-...+|+-+..-|+.++|..+|.++.--|..++..+.+.=..
T Consensus 51 ~~~~d~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~t 106 (121)
T PF02064_consen 51 PDPNDPEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQKT 106 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 33445556677777888999999999999999999999999999999887765443
No 227
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.87 E-value=66 Score=27.33 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchh
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVV 218 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~i 218 (971)
|+.++-+|-=+++.|||++|.++...+.+.-+...+..
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 67788899999999999999999988877655444433
No 228
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=36.70 E-value=35 Score=34.59 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=31.3
Q ss_pred Hhccccce--ecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 391 QYFSPYLS--ADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 391 QYl~PYss--V~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
+|++=+.. .++..++++.|||+. .|.+||.+|||.-.-++
T Consensus 37 ~yLr~~p~~~ati~eV~e~tgVs~~----~I~~~IreGRL~~~~~~ 78 (137)
T TIGR03826 37 KFLRKHENRQATVSEIVEETGVSEK----LILKFIREGRLQLKHFP 78 (137)
T ss_pred HHHHHCCCCCCCHHHHHHHHCcCHH----HHHHHHHcCCeeccCCC
Confidence 46664544 999999999999987 56677899999766544
No 229
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.57 E-value=3.3e+02 Score=34.74 Aligned_cols=95 Identities=5% Similarity=-0.097 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++.-||+...+.|.+++|...+.++.+.+.. ......+...+-...+.++.+...+.++-. ...+ +
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~--~---- 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSS--S---- 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCC--C----
Confidence 457889999999999999999999999988763 346667777777777887777766666543 2222 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..+...|.|.+|...|=.+
T Consensus 154 -~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 154 -AREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 233466778888999999999998776
No 230
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=36.57 E-value=2.9e+02 Score=29.63 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+..++.|+.+++..-+.|=..+ +-..||+.||+|-..+-+-|..|..+|-|..+ +..|+.+..
T Consensus 9 ~~~~~~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~~--~g~G~~V~~ 73 (239)
T PRK04984 9 AGFAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ--HGKPTKVNN 73 (239)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEeCC
Confidence 35788999999999999999999 79999999999999999999999999998743 456777764
No 231
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=36.49 E-value=55 Score=28.79 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHhccc-cceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 390 IQYFSP-YLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 390 iQYl~P-YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.+|+.- ...++=..+|+++|+|.-.+-..|..|-.+|++.
T Consensus 6 l~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 6 LEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp HHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344444 7779999999999999999999999999999884
No 232
>KOG2235|consensus
Probab=35.63 E-value=2.1e+02 Score=35.68 Aligned_cols=62 Identities=16% Similarity=0.327 Sum_probs=53.3
Q ss_pred HHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 374 APHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 374 ~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
..+++.+-++|+.+.-+| ..|++..+|+.|+++.+++...|+.-....-+.||+|. |++++.
T Consensus 114 e~Y~d~iaeEinekLqE~-----gqvtiaeLakq~dl~sellqs~l~ek~lg~iikgr~dg--gviyT~ 175 (776)
T KOG2235|consen 114 EEYVDRIAEEINEKLQEQ-----GQVTIAELAKQWDLPSELLQSLLIEKLLGSIIKGRVDG--GVIYTS 175 (776)
T ss_pred HHHHHHHHHHHHHHHHHh-----cchHHHHHHHhcCCcHHHHHHHHHHHhhccceeeeecC--CEEeeH
Confidence 467888888888886654 78999999999999999999999888777778999998 999874
No 233
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=35.42 E-value=1.3e+02 Score=32.97 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
++..|.-+++.|+++.|.+.|.++...-+.+.......+.+..+....+++..+.....+.-..
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6678889999999999999999998888877777778788888888899999999888877554
No 234
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=35.28 E-value=6.5e+02 Score=29.37 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk 265 (971)
-.+..-.+.||++.|.++|.++.+... +..+-..+...++.+..|+++.+...+.++...- ++ ++. -+
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~~~~--~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~---P~---~~~---al- 190 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAELAD--NDQLPVEITRVRIQLARNENHAARHGVDKLLEVA---PR---HPE---VL- 190 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CC---CHH---HH-
Confidence 346666999999999999999876543 3333333344778888999999999998876542 11 121 11
Q ss_pred HHHHHHHhhccCHHHHHHHHhhc
Q psy11733 266 VAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 266 ~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-..+-.++..|+|..|.+.+=..
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 22234567889999888665543
No 235
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=34.49 E-value=88 Score=33.93 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+++.||..++..-+.|=..+ +-..||+.||+|...+-.-|..|-..|-|.-+ +..|+.+..
T Consensus 12 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 12 SDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 46789999999999999999999 89999999999999999999999999988755 456776655
No 236
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=34.22 E-value=1.7e+02 Score=24.30 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=34.1
Q ss_pred ecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCC
Q psy11733 399 ADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN 436 (971)
Q Consensus 399 V~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvn 436 (971)
++.+.+++.||++...+-+.|..|...|-|...-+...
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~ 58 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRR 58 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccE
Confidence 89999999999999999999999999999988766533
No 237
>KOG1156|consensus
Probab=34.22 E-value=1.1e+03 Score=30.03 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
-+.-.++-++.||..+||++.|..++..+.+.|+| .++..+..-|+.-..|+...+...+..|+++- .+. |
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT---liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aD---R-- 439 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT---LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TAD---R-- 439 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch---HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chh---H--
Confidence 36677899999999999999999999999999875 78999999999999999999999999988752 211 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHH
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARF 284 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~ 284 (971)
.|.+-.+.+.+....-.+|.+.
T Consensus 440 ----~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 440 ----AINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ----HHHHHHHHHHHHccccHHHHHH
Confidence 2334445556665555555544
No 238
>PF13518 HTH_28: Helix-turn-helix domain
Probab=33.97 E-value=88 Score=25.13 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
|.+++..|.. ..++..+|..||+|...+..|+..+=..| +++-
T Consensus 2 r~~iv~~~~~---g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l 44 (52)
T PF13518_consen 2 RLQIVELYLE---GESVREIAREFGISRSTVYRWIKRYREGG-IEGL 44 (52)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHh
Confidence 4556666664 34999999999999999999999987766 4443
No 239
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=33.66 E-value=60 Score=30.41 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=39.3
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcC
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDS 434 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDs 434 (971)
+.+..++.....++...+|+.+|+|...+-+.+.+|..+|-|. +.+|.
T Consensus 6 ~~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 56 (108)
T smart00344 6 RKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINP 56 (108)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCH
Confidence 4455566666789999999999999999999999999999775 45553
No 240
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=33.50 E-value=1.1e+02 Score=25.39 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=33.8
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
.+++..+|+.++++...+-+-+.+|+..|=|.-+-|..++
T Consensus 21 ~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 21 ELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp GEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4899999999999999999999999999988777666553
No 241
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=33.39 E-value=47 Score=30.64 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHH
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENEL 419 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eL 419 (971)
|...|.+++.- ..++|..+|+.||+|..-+-+.|
T Consensus 7 R~~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L 40 (80)
T TIGR02844 7 RVLEIGKYIVE-TKATVRETAKVFGVSKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHh
Confidence 88888999999 99999999999999999877754
No 242
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=33.35 E-value=1.2e+02 Score=31.52 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccCCCcccccc--cccccccccCCCCCCccCCCCCCC
Q psy11733 62 VKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQ--LNFSFYLNSTGALPDVASSGNMGP 139 (971)
Q Consensus 62 l~~Ai~~~k~~~nv~~Y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~g~ 139 (971)
.+.||.++.+|-|...|+.+-++|......+|.++-++.++-..-..+...+++ +++
T Consensus 3 ~~~a~~~l~~g~n~~~~~~~A~~l~i~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L--------------------- 61 (166)
T cd04750 3 CKLAIEFLFKGINQKKYEGAARKLEVEVETVQHGVEALVYLLIESTKLKLSERDFQDSI--------------------- 61 (166)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH---------------------
Confidence 478999999999999999999999755555666665554443333222222221 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11733 140 QDIPTLDPLLIETKNKKAAMKLEKLDNDL 168 (971)
Q Consensus 140 ~~~~~~D~~wie~~~~~n~~~le~Le~eL 168 (971)
....++++..+.+.+.-..+...|+..+
T Consensus 62 -~~l~~~~e~~~~l~~~y~~~~~~l~~~l 89 (166)
T cd04750 62 -EFLGFSDDLNEILLQLYESNRKEIRNIL 89 (166)
T ss_pred -HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244556666666666666666666554
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=33.31 E-value=28 Score=26.41 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.8
Q ss_pred HHHHHhhhHHHhhCCHHHHHH
Q psy11733 752 RGHDDLGDHYLDCGDLSNALK 772 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alk 772 (971)
+++..||..|+..||.++|.+
T Consensus 14 ~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhcC
Confidence 588999999999999999864
No 244
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=33.26 E-value=54 Score=28.77 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=32.2
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHH
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMT 421 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~ 421 (971)
|.+|+.-|.+.=-.+++..+|+.+|+|...|-+|=.+
T Consensus 9 rdkA~e~y~~~~g~i~lkdIA~~Lgvs~~tIr~WK~~ 45 (60)
T PF10668_consen 9 RDKAFEIYKESNGKIKLKDIAEKLGVSESTIRKWKSR 45 (60)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHCCCHHHHHHHhhh
Confidence 6788888988878999999999999999988877543
No 245
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=33.24 E-value=1.8e+02 Score=35.13 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcc
Q psy11733 714 TLDPLLIETKNKKAAMKLEKLDNDLKNYKS----NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDY 780 (971)
Q Consensus 714 ~~D~~wve~~~~~n~~el~kLe~eLk~~k~----NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdy 780 (971)
..-..|++- ...-.++.+.+..+..++. |-...+.+.+|..+|..|...|++++|+++|.++.+.
T Consensus 73 ~~a~a~~NL--G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNL--GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444443 3344556667777766653 3333455677999999999999999999999999874
No 246
>KOG4414|consensus
Probab=33.10 E-value=65 Score=33.08 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHH
Q psy11733 342 RDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENEL 419 (971)
Q Consensus 342 r~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eL 419 (971)
..+-......+|....+.+..+.-. -=.++-+..|-+.-|.|++.-.++.|++|.++.+|.-+|+++++.-+-+
T Consensus 80 WgiGQkiWq~Df~GiYeaI~~~dWS----eeak~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddAtk~i 153 (197)
T KOG4414|consen 80 WGIGQKIWQHDFAGIYEAINAHDWS----EEAKDIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDATKGI 153 (197)
T ss_pred hhhhHHHHhcccchHHHHHhhhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3445566777777777766654211 0123456677788889999999999999999999999999988654443
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.07 E-value=1.8e+02 Score=31.45 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhccc--CCchhHHHHHHH
Q psy11733 724 NKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC--TNGKHVVDMCLN 793 (971)
Q Consensus 724 ~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdyc--ts~gh~IDm~l~ 793 (971)
-++.+..+.+.|.-|+-...--++.=.-+-.+-.||-+...||+++|.++|.++.+.- ...+..+.|=|+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqmKLn 203 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQMKLN 203 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHhHHH
Confidence 3444555555555555554422222244446778999999999999999999998763 334455555443
No 248
>PRK04841 transcriptional regulator MalT; Provisional
Probab=32.93 E-value=2.6e+02 Score=35.90 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
.+...+|..+...|+++.|...+.++.......+.. ......+-.+....|++..+...+.++....+..+.... +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-~ 570 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL-P 570 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc-c
Confidence 456778999999999999999999887665443332 223334455667789999999999988776543321111 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....+....|..+...|++..|...+-++
T Consensus 571 -~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 571 -MHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 12233445576778889999998887765
No 249
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.76 E-value=2.4e+02 Score=30.82 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhh-----cccCCchhHHHHHHHHHHHHHh
Q psy11733 726 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRAR-----DYCTNGKHVVDMCLNVIRVSVY 800 (971)
Q Consensus 726 ~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~r-----dycts~gh~IDm~l~lIRV~if 800 (971)
-...-++-|+.-+..++.-.-.-.++.-..++|+.|.+.||.++|++.|.++- |.... -.-+++..+.+.+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~--l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS--LLTEVLWRLLECAKR 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHH
Confidence 45566777788888777665555556667799999999999999999999971 22232 233556667777777
Q ss_pred ccCHHHHHHHH
Q psy11733 801 LQNWSHVLSYV 811 (971)
Q Consensus 801 ~~D~~~V~~~i 811 (971)
.+|...+.+..
T Consensus 231 ~~~~~~~l~~~ 241 (247)
T PF11817_consen 231 LGDVEDYLTTS 241 (247)
T ss_pred hCCHHHHHHHH
Confidence 78877665543
No 250
>KOG2072|consensus
Probab=32.29 E-value=5.5e+02 Score=33.28 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH---HhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRA---RDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~---Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
++.|+=+.+.|..+.|+..+..+ +-+-...+-.--+.|.-+.+++.+..-+.++.-+..=+.+....+ ..++-
T Consensus 12 LKRAdElI~VGkkq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qqvn----v~SlE 87 (988)
T KOG2072|consen 12 LKRADELIEVGKKQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQVN----VKSLE 87 (988)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhc----hHhHH
Confidence 46788899999999999987542 222222222335667888999988887777777665555443221 01111
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhh--cccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccch
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQ--AHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEP 339 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLe--a~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP 339 (971)
+ |..+...|...+-..|-+-=-+ ...+.-+.....+|+++. ..++|+=.+-||.+= ..+ .|
T Consensus 88 ~---VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~~~tPEsll-lSvVsGe~sqdR~DR-----------~ll--tP 150 (988)
T KOG2072|consen 88 N---VVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEAGVTPESLL-LSVVSGEDSQDRSDR-----------ELL--TP 150 (988)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCChHHHH-HHHhcccccccccch-----------HHH--HH
Confidence 1 2333333433333322221111 001112333445666653 334455555566431 111 25
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccce
Q psy11733 340 QLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLS 398 (971)
Q Consensus 340 ~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYss 398 (971)
+++ |.=-.|..|+++|... .|+..+|..|=.+++ |||--|++
T Consensus 151 Wlk-----FLWeSYR~vLdlLRNN-----------a~lE~lY~~ia~~aF-qFCLkYqR 192 (988)
T KOG2072|consen 151 WLK-----FLWESYRTVLDLLRNN-----------ARLEALYHDIARKAF-QFCLKYQR 192 (988)
T ss_pred HHH-----HHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHH-HHHHHHhh
Confidence 544 3334577888888753 356666666666655 56655554
No 251
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=32.26 E-value=94 Score=33.00 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
.+.+++.||.+++..-+.|=..+.-..+|+.||+|...+-+-|..|...|-+.-
T Consensus 13 ~e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~ 66 (221)
T PRK11414 13 TLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSV 66 (221)
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEe
Confidence 467999999999999999999999999999999999999999999999998764
No 252
>KOG2002|consensus
Probab=32.24 E-value=2.2e+02 Score=37.29 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
+++.-|+.|||--|||+.+.+.+..+..+.....-+-+-++.+-|..--+||+..+..|.-.+...-+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---------- 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---------- 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----------
Confidence 3567899999999999999999988877764443344678888888888999999999998887643221
Q ss_pred HHHHHHHHH--HHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGL--AELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL--~~L~~r~yk~AA~~FLea 288 (971)
.+-...|| ++|..|++..|.-+|-..
T Consensus 341 -~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 341 -FVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred -ccccccchhHHHHHhchHHHHHHHHHHH
Confidence 11233444 566788999988888654
No 253
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=32.24 E-value=86 Score=36.74 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
-..+++.|+..+....+.|=..+ +...||+.||+|...+.+-+..|..+|-|.++ ...|..+.
T Consensus 7 ~~~~~~~i~~~i~~g~l~~g~~lps~r~la~~~~vsr~tv~~a~~~L~~~g~i~~~--~~~G~~v~ 70 (431)
T PRK15481 7 ANEIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQ--GRNGTVIR 70 (431)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEc
Confidence 45788999999999999999998 89999999999999999999999999998764 34576664
No 254
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=32.01 E-value=88 Score=32.45 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=46.5
Q ss_pred HHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 385 RNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 385 R~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
|...++-+...-..|+++.+|+.+|+|..++++-|..|-..|-+...=....|..-+.+|
T Consensus 12 ~~l~~lA~~~~~~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p 71 (164)
T PRK10857 12 TAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDA 71 (164)
T ss_pred HHHHHHHhCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCH
Confidence 333333344445679999999999999999999999999999998866666676666655
No 255
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=31.92 E-value=1.1e+02 Score=33.27 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+++.||..++..-+.|=..+ +-..||+.||||-..|-.-|..|-..|-|..+ ...|+.+..
T Consensus 9 ~~~v~~~i~~~I~~g~l~pG~~LPsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~--~~~G~~V~~ 73 (251)
T PRK09990 9 ADVVAERIERLIVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETA--QGRGSFVAR 73 (251)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEec
Confidence 46789999999999999999999 89999999999999999999999999988654 345766654
No 256
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=31.83 E-value=74 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=29.4
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.++...||+.+|++...+-+.|..|...|-|.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999999999885
No 257
>KOG2796|consensus
Probab=31.77 E-value=8.3e+02 Score=27.97 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++-+..++.-.|.|.-...+|.+++++-...+ --..-.+-+++...||-..+..+..+.+..-..-. .+++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~--p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~------~~q~ 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE--PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD------GLQG 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh------ccch
Confidence 356678889999999999999999999754333 34555778888899999999998886653211111 1123
Q ss_pred HHHH--HHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKV--AAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~--~~GL~~L~~r~yk~AA~~FLea 288 (971)
++-+ ..++.++.+++|..|...|-++
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhc
Confidence 3333 4556788999999999998766
No 258
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.74 E-value=2.7e+02 Score=25.73 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT 212 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct 212 (971)
....+...+|..+..-|++++|.+.+.++....-
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999988766653
No 259
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=31.71 E-value=6.7e+02 Score=28.30 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.-.|..|...|++++|++.+.+. .-+++....|.+.+..+..+.+.+.+.+.++.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34566777778888777665431 23566666677777777777777777777654
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=31.55 E-value=2.9e+02 Score=33.26 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhcc
Q psy11733 723 KNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQ 802 (971)
Q Consensus 723 ~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~ 802 (971)
++=.-+-++-.|+..++-+++-.-+ .-|..||+...+.||++-|.+||.++.|+.. +.=+....|
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~-----------L~lLy~~~g 387 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKAKDFSG-----------LLLLYSSTG 387 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHH-----------HHHHHHHCT
T ss_pred HHhHHHHhcCCHHHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCccc-----------cHHHHHHhC
Confidence 4445566777888888877754322 2788999999999999999999999887542 112455668
Q ss_pred CHHHHHHHHHHHhcCCChhhhhcchhhhhhhccchhHHHHHHHhhcCChhHHHHHHHH
Q psy11733 803 NWSHVLSYVNKAEATPDFAEVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQ 860 (971)
Q Consensus 803 D~~~V~~~i~KA~~~rdf~~vi~s~~f~~~Le~~P~lr~li~sfy~~~Y~~~~~~L~~ 860 (971)
|-..+.+-.+.|+...++ ...+..+|+-+++..|.+.|.+
T Consensus 388 ~~~~L~kl~~~a~~~~~~------------------n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGDI------------------NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHHHTT-H------------------HHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCH------------------HHHHHHHHHcCCHHHHHHHHHH
Confidence 888887777777655443 3456778888888888888864
No 261
>KOG1464|consensus
Probab=31.18 E-value=6.7e+02 Score=28.72 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=26.7
Q ss_pred HHHHHHhhhhcCccceeeccCCCeEEecCC
Q psy11733 864 LENELMTLILDGQIQARIDSHNKILYAKQQ 893 (971)
Q Consensus 864 ie~EL~~fI~~G~L~arID~vngvl~t~r~ 893 (971)
++.=|+.+|-+.+|.+|||-+|+.|+-...
T Consensus 381 V~~LLV~~ILD~~i~g~Ide~n~~l~~~~~ 410 (440)
T KOG1464|consen 381 VESLLVSCILDDTIDGRIDEVNQYLELDKS 410 (440)
T ss_pred HHHHHHHHHhccccccchHHhhhHhccCcc
Confidence 778889999999999999999999986544
No 262
>PRK04239 hypothetical protein; Provisional
Probab=30.97 E-value=35 Score=33.36 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
.+..|.-++.|++.|=..=.|+.++=.=-=-...||..|++|...|+|.++||-
T Consensus 35 ~e~qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e 88 (110)
T PRK04239 35 AEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDD 88 (110)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 467788889999999887777777631111135799999999999999999873
No 263
>KOG4234|consensus
Probab=30.84 E-value=1.6e+02 Score=32.22 Aligned_cols=69 Identities=20% Similarity=0.368 Sum_probs=44.5
Q ss_pred HHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHH--HhccCHHHHHHHHHHHhc-CCChhhh
Q psy11733 755 DDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVS--VYLQNWSHVLSYVNKAEA-TPDFAEV 823 (971)
Q Consensus 755 ~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~--if~~D~~~V~~~i~KA~~-~rdf~~v 823 (971)
..=|+-+.+-||+++|..-|.++.+-|.++....--++..=|-+ |-.+-|.....-..||-. -|.+.++
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 35577888999999999999999999977766654333333322 223556665555555544 2444433
No 264
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.81 E-value=1e+03 Score=29.59 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=75.0
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch-hhHHHHHHHHHHH--hhcHHHHHHHHHHHhccCcc
Q psy11733 174 NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV-VDMCLNVIRVSVY--LQNWSHVLSYVNKAEATPDF 250 (971)
Q Consensus 174 NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~-idm~l~lIrv~I~--~~dw~~V~~~v~KAk~~id~ 250 (971)
++.+.-.++ ..=++++|.+.|-.. |.+...+..++|.+.++. .--+|..+++.+. .+|+..+.+.+.+.-.....
T Consensus 94 ~~~d~k~~~-~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 94 RLTDLKFRC-QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred chHHHHHHH-HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 333333444 445799999999988 999999988888764443 4556677776654 35899999999988776654
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 251 AEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 251 ~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
.++ |.+..-+....|+.++..+....+.+..=
T Consensus 172 ~~d----~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 172 RGD----PAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred cCC----HHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 443 45566667788888888887666555543
No 265
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=30.08 E-value=3.4e+02 Score=24.28 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHHhcccc-ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 385 RNRALIQYFSPY-LSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 385 R~kaliQYl~PY-ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
|...+.+++.-. ..+++..+|+.+|++...+-+-|..|...|-|.-
T Consensus 6 r~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~ 52 (91)
T smart00346 6 RGLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQ 52 (91)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeee
Confidence 445556666555 5799999999999999999999999999998854
No 266
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=30.05 E-value=1.4e+02 Score=24.12 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=34.1
Q ss_pred cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC
Q psy11733 396 YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH 435 (971)
Q Consensus 396 YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv 435 (971)
-..+++..+++.||++...+-+.|..|...|-+.-.-+..
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~ 47 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGK 47 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCC
Confidence 4668999999999999999999999999999887554433
No 267
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.84 E-value=1.3e+02 Score=27.50 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRA 207 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~ 207 (971)
+-..+..=|+||++.||+.+|+.+++-.
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445888899999999999999987643
No 268
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=29.33 E-value=64 Score=22.86 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.3
Q ss_pred HHHHhhhHHHhhCCHHHHHHHHH
Q psy11733 753 GHDDLGDHYLDCGDLSNALKCYS 775 (971)
Q Consensus 753 g~~dlg~~y~~iGDl~~Alkay~ 775 (971)
++..+|.-+...||.++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998775
No 269
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=29.14 E-value=1.1e+03 Score=28.73 Aligned_cols=171 Identities=14% Similarity=0.054 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHH--HHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLN--VIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~--lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
-.-+.+..+.-++..|++..|.+.+..+...-. + +..+. ...+.+..++.+.+.+...|+-...- +
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P---~---- 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP--D---NPYYLELAGDILLEANKAKEAIERLKKALALDP---N---- 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---C----
Confidence 345788899999999999999999988765433 3 23333 34455566888888888877765421 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhcc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLEL 337 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~ 337 (971)
..-|+.--|-++|..|++++|...+-...+.. |+|...|=.|+- ...++.+..
T Consensus 373 ---~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--------p~dp~~w~~LAq----ay~~~g~~~------------ 425 (484)
T COG4783 373 ---SPLLQLNLAQALLKGGKPQEAIRILNRYLFND--------PEDPNGWDLLAQ----AYAELGNRA------------ 425 (484)
T ss_pred ---ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CCCchHHHHHHH----HHHHhCchH------------
Confidence 12456777888999999999988877654331 122222222211 111111000
Q ss_pred chHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHH
Q psy11733 338 EPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRAL 389 (971)
Q Consensus 338 eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kal 389 (971)
+-+.-..-.-|+.++|......+..-...+..|+.-+.-++..+.++|....
T Consensus 426 ~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~~~~ 477 (484)
T COG4783 426 EALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQQNE 477 (484)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 0011122335899999999999999999999999999999999999987643
No 270
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.03 E-value=1.3e+02 Score=27.45 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=21.3
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHH
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSR 776 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r 776 (971)
-..+..=|.||.+.||..+|+.|++=
T Consensus 35 A~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 35 AESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34677889999999999999999874
No 271
>PRK14574 hmsH outer membrane protein; Provisional
Probab=28.94 E-value=1.4e+03 Score=29.81 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHH
Q psy11733 143 PTLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCL 222 (971)
Q Consensus 143 ~~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l 222 (971)
...+...+..-..+...-++.|++-++...++.- +..+++.++...|+.+.|++.+.++.+. .+.. ....+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~-~~~ll 106 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------QVDDWLQIAGWAGRDQEVIDVYERYQSS--MNIS-SRGLA 106 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------hHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCC-HHHHH
Confidence 3456666666666667778888888877777642 1118899999999999999999887621 1111 23334
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 223 NVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 223 ~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+.++....++|..+.+.+.++-..- ++ ++.+. ...++.++..+++.+|...+-..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d---P~---n~~~l----~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD---PT---NPDLI----SGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC---CC---CHHHH----HHHHHHHhhcCCHHHHHHHHHHh
Confidence 44567777799999988888875431 11 12222 12246677889999999998776
No 272
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=28.19 E-value=2.9e+02 Score=28.71 Aligned_cols=71 Identities=10% Similarity=-0.029 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id 249 (971)
++....++++.||-.+-..|+|++|+.+|.++-..-.+ --...++.=.+.+..||...+.+....|-....
T Consensus 64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 46777889999999999999999999999997655421 123456666677778999999888888776553
No 273
>KOG2911|consensus
Probab=28.14 E-value=7.7e+02 Score=29.71 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHH------HHHHhhcccCCchhHHH
Q psy11733 716 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALK------CYSRARDYCTNGKHVVD 789 (971)
Q Consensus 716 D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alk------ay~r~rdycts~gh~ID 789 (971)
+-.-+-...++-..+++.|++|++.+++-+- - +++-|++.-|+. .-++-++.|++.-+.++
T Consensus 234 ~V~~L~~~~~~L~kqie~L~qeie~~~~~~r-~------------~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~ 300 (439)
T KOG2911|consen 234 SVADLIQARAKLAKQIEFLEQEIEKSKEKLR-Q------------ALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLE 300 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445666777888999999999998876433 3 345556555554 33444566666666555
Q ss_pred HHHHHHHHH
Q psy11733 790 MCLNVIRVS 798 (971)
Q Consensus 790 m~l~lIRV~ 798 (971)
-+++-|--+
T Consensus 301 ~vl~~Id~s 309 (439)
T KOG2911|consen 301 TVLSQIDNS 309 (439)
T ss_pred HHHHHHHhh
Confidence 555544433
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=27.87 E-value=3.7e+02 Score=33.41 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCC-cccCCCh
Q psy11733 223 NVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCD-FPELLSP 301 (971)
Q Consensus 223 ~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~-~~ells~ 301 (971)
..+=..+..++|..+...+..+.+.....++. ..+.+...+....|+++.+.|+.+.|...|....|..++ ....-..
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSK-LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc-hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 33445567799999999999888765432210 112345778889999999999999999999955444322 1222334
Q ss_pred hHHHHHHHH
Q psy11733 302 NNIATYGGL 310 (971)
Q Consensus 302 ~Dva~Y~~L 310 (971)
+++.++..|
T Consensus 445 ~El~ila~L 453 (608)
T PF10345_consen 445 RELYILAAL 453 (608)
T ss_pred hHHHHHHHH
Confidence 567777765
No 275
>PRK11523 DNA-binding transcriptional repressor ExuR; Provisional
Probab=27.77 E-value=1.3e+02 Score=32.61 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+++.||..++..-+.|=..+ +-..+|+.||+|...+-.-|..|-..|-|.-+ +..|+.+..
T Consensus 10 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~L~~eGlV~~~--~~~G~~V~~ 74 (253)
T PRK11523 10 YQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVR--KGSGIHVVS 74 (253)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCeeEEec
Confidence 56789999999999999999999 58899999999999999999999999988644 445766654
No 276
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.56 E-value=1e+03 Score=27.70 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 187 LGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 187 Lg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id 249 (971)
.++++...|+++.|.+.+.+..+.-+ +| .++...+..+.+..|||..+.+.+.+++....
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P--~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAP--RH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--CC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 48999999999999999999987654 33 35666667788888999999998888876543
No 277
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=27.47 E-value=67 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.5
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcc
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDY 780 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdy 780 (971)
+..+=+-|++.|+.++|.+.|.++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 345667899999999999999999764
No 278
>KOG0276|consensus
Probab=27.29 E-value=2.3e+02 Score=35.34 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCChhhhhcchh
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSG 828 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~rdf~~vi~s~~ 828 (971)
+--+-+..||++..+.|++..|.+|+.+++|+.. ++-+.--.||-..+...-..|+..-.+ |
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~-----------LlLl~t~~g~~~~l~~la~~~~~~g~~-----N-- 725 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGS-----------LLLLYTSSGNAEGLAVLASLAKKQGKN-----N-- 725 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhh-----------hhhhhhhcCChhHHHHHHHHHHhhccc-----c--
Confidence 3345688999999999999999999999999753 222333456766666555555432211 1
Q ss_pred hhhhhccchhHHHHHHHhhcCChhHHHHHHHH
Q psy11733 829 FKLFLELEPQLRDILVQFYNSKYATCLNLLAQ 860 (971)
Q Consensus 829 f~~~Le~~P~lr~li~sfy~~~Y~~~~~~L~~ 860 (971)
--++..|-.++|..|++.|..
T Consensus 726 -----------~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----------LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----------hHHHHHHHcCCHHHHHHHHHh
Confidence 235667888999999999864
No 279
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.28 E-value=84 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccC
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCT 782 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdyct 782 (971)
+.-+=.-|++.|+.++|.+.|.+++....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 34556679999999999999999976543
No 280
>PF12854 PPR_1: PPR repeat
Probab=27.19 E-value=74 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=21.6
Q ss_pred HHHHhhhHHHhhCCHHHHHHHHHHhh
Q psy11733 753 GHDDLGDHYLDCGDLSNALKCYSRAR 778 (971)
Q Consensus 753 g~~dlg~~y~~iGDl~~Alkay~r~r 778 (971)
.+.-+-+=||+.|++++|.+.+.+|.
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 35556678999999999999999873
No 281
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=27.09 E-value=1.4e+02 Score=32.34 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
.+.+++.||..++..-+.|=..+ +-..||+.||||...+-.-|..|-..|-|..+ ...|+.+...
T Consensus 4 ~~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~--~~~G~~V~~~ 69 (253)
T PRK10421 4 SDEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSR--RGGGTFIRWR 69 (253)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--CCCeEEEecC
Confidence 46789999999999999999999 79999999999999999999999999988754 4567777653
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=27.00 E-value=9.4e+02 Score=27.05 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHH------HhhcHHHHHHHHHHHhccCc
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSV------YLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I------~~~dw~~V~~~v~KAk~~id 249 (971)
..+-.+.++.+++--+++.|+|+.|+....++...-+++.. +|-.+-+.-++- -.+|-..+...+...+.++.
T Consensus 66 ~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ 144 (254)
T COG4105 66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ 144 (254)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH
Confidence 34555999999999999999999999999997655544333 444443333332 23566677777777776655
Q ss_pred ccCCCCChhH-------H---HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 250 FAEGKDNNQA-------V---FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 250 ~~~d~~r~~~-------l---~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.=++..=.+. + .+.....-|-+++..|.|-.|+.-|=..
T Consensus 145 ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 145 RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3332110111 1 2333446677888999999999998776
No 283
>KOG1156|consensus
Probab=26.99 E-value=3.6e+02 Score=33.94 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 817 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~ 817 (971)
-+-..+.-++.||-..||.+.|.+....+.|.|+| .++..+..-||.-..|+.+....-+..|.+.
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT---liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT---LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch---HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 34556778999999999999999999999999987 5999999999999999999999999988873
No 284
>KOG4555|consensus
Probab=26.80 E-value=5.2e+02 Score=26.69 Aligned_cols=96 Identities=18% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
++-.|--..+.|+++.|++.|.+....|+. ..+.+=+--...-..++-..++..++||-++- ++..+. .-.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~trt---acq 116 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQTRT---ACQ 116 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhc---CccchH---HHH
Confidence 334466678899999999999999888853 33444455555556788999999999987763 221111 112
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-.|..|+.+=-.|+-..|...|-.+
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHH
Confidence 2456787777788877777777654
No 285
>PF13041 PPR_2: PPR repeat family
Probab=26.77 E-value=81 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHHhhhHHHhhCCHHHHHHHHHHhhcccCCch
Q psy11733 753 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK 785 (971)
Q Consensus 753 g~~dlg~~y~~iGDl~~Alkay~r~rdycts~g 785 (971)
.+.-+=+.|++.|+.++|++.|.+|.+.-..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 455667889999999999999999987654443
No 286
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.50 E-value=91 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARD 209 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rd 209 (971)
+..+-+.|.+.|+.++|.+.|.++++
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44567889999999999999999875
No 287
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=26.38 E-value=2.4e+02 Score=23.83 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHhcc-ccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 389 LIQYFS-PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 389 liQYl~-PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
+..++. ....+++..+|+.++++...+-+.|-+|+..|=|.=.-|..++
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~ 57 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDK 57 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCT
T ss_pred HHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcC
Confidence 344444 7889999999999999999999999999999988655555444
No 288
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=26.13 E-value=1.6e+02 Score=31.01 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHHHH-HHhcCC--HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 182 RGHDDLGDH-YLDCGD--LSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 182 ~~~~dLg~~-y~~iGD--l~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id 249 (971)
..+..+|.. |+..|+ +++|.+++.++...-. + -.+..+.+--.....|+|..+..+..++-....
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP--~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDA--N-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345566764 456666 4777777776654422 1 224445555555666777777777777655543
No 289
>PHA02130 hypothetical protein
Probab=26.10 E-value=48 Score=29.45 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHhccCCCCCCCCCCCCcccccccccccccccccccccc
Q psy11733 556 AARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ 599 (971)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (971)
.-|++|+++||.||=.-+--|=--..|=|||-.+.-+...-+.|
T Consensus 18 sl~~wl~~~~dswdddil~ipfkstv~w~lcp~~qdi~ngke~f 61 (81)
T PHA02130 18 SLREWLDERFDSWDDDILSIPFKSTVYWDLCPYAQDIHNGKENF 61 (81)
T ss_pred HHHHHHHhcccccccchhcccccceeeeccCcchhhhhcCccee
Confidence 46899999999999655555666678999998776555444433
No 290
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=25.82 E-value=1.8e+02 Score=28.89 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=39.8
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..++.+.+|+.+++|..++++-|..|-..|-+..+=....|..-+..|
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCH
Confidence 469999999999999999999999999999988755555565555544
No 291
>KOG0624|consensus
Probab=25.76 E-value=1.2e+03 Score=27.76 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH---------HHH---HHHHHHhhcHHHHHHHHHHHh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC---------LNV---IRVSVYLQNWSHVLSYVNKAE 245 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~---------l~l---Irv~I~~~dw~~V~~~v~KAk 245 (971)
+.---+....|..+++.|.++.|..=|..+.+..++.+...+.. |.+ +.-++--||...|..+++++-
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 34444556678899999999999999998888777665554432 222 333344467777777776654
Q ss_pred ccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 246 ATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 246 ~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+ ..|+- -|..+.+-.+...++-+.|...+=.+
T Consensus 183 Ei----~~Wda------~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 183 EI----QPWDA------SLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred hc----Ccchh------HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33 24753 33344444466777777777666554
No 292
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.55 E-value=1.3e+02 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYC 211 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdyc 211 (971)
+.-+-.-|.+.|++++|.+.|.+++..-
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4456678899999999999999998653
No 293
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=25.45 E-value=3.3e+02 Score=27.87 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++.-|.-.++.|+|.+|.+.+..++..-..+...-..-+.++-+....++|..+...+.+--.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46777888899999999999999998888777777788899999999999999999888876554
No 294
>PF12854 PPR_1: PPR repeat
Probab=25.40 E-value=87 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRAR 208 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~R 208 (971)
.+.-+-+-|++.|++++|.+.+.+|+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 46778899999999999999998763
No 295
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=25.29 E-value=2.1e+02 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=49.1
Q ss_pred hHHhHHHHHHHHHHHHHHHhc---cccc-----------------eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 373 IAPHVNTLYTQIRNRALIQYF---SPYL-----------------SADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 373 L~~Hv~~L~~~IR~kaliQYl---~PYs-----------------sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
|+...+.+=++.|.++.+|.- -+|| +++-..||+.+|+|...+-+-+.+|-..|-|..|
T Consensus 153 lr~~~~~iEee~Rkka~Vq~Ai~tLSySEleAv~~IL~~L~~~egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 153 LRAQAEEIEEEARKKAAVQMAINTLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHhccccccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 444567778889999888872 3476 7889999999999999999999999999988765
No 296
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=25.11 E-value=1.1e+02 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.8
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
..++...+|+.+|++...+.+.|..|...|-|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999998754
No 297
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=24.41 E-value=2.5e+02 Score=28.74 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=42.8
Q ss_pred ccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 395 PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 395 PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
|-..++.+.+|+..|+|..++++-+..|...|-|...=-..-|..-+..|
T Consensus 21 ~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p 70 (153)
T PRK11920 21 DGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPA 70 (153)
T ss_pred CCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCH
Confidence 34568999999999999999999999999999998877776776766665
No 298
>COG2118 DNA-binding protein [General function prediction only]
Probab=24.03 E-value=62 Score=31.86 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
.+.-+.-++.|++.|=..=.|..+.=+=-==.+.+|..|..|+..|+|..+||-
T Consensus 38 ~eaqkqaiLrqiLtpeAreRL~~irLvRPe~AeavE~qLi~LaqtGri~~~I~e 91 (116)
T COG2118 38 EEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQLIQLAQTGRITHKIDE 91 (116)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 456677788899999776666665421111145799999999999999999984
No 299
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=23.91 E-value=2.9e+02 Score=26.91 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=42.3
Q ss_pred cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHH
Q psy11733 396 YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLN 456 (971)
Q Consensus 396 YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk 456 (971)
=..++...||+.+|+|...+.+-|..|...|-|...-....|......+ ...+..++++
T Consensus 23 ~~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy~l~~~~--~~it~~~v~~ 81 (130)
T TIGR02944 23 SQPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGYTLARAP--RDITVADIVK 81 (130)
T ss_pred CCCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCChhhcCCc--cccCHHHHHH
Confidence 3568999999999999999999999999999997754444443333333 2223444444
No 300
>KOG1127|consensus
Probab=23.60 E-value=3.6e+02 Score=35.65 Aligned_cols=129 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHH
Q psy11733 160 KLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLS 239 (971)
Q Consensus 160 ~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~ 239 (971)
...-||.++..-+.|. +--++|+.++..|++++|-++....-.- +.+...+.=-..+|.+++....+
T Consensus 993 liglLe~k~d~sqynv-------ak~~~gRL~lslgefe~A~~a~~~~~~e------vdEdi~gt~l~lFfkndf~~sl~ 1059 (1238)
T KOG1127|consen 993 LIGLLELKLDESQYNV-------AKPDAGRLELSLGEFESAKKASWKEWME------VDEDIRGTDLTLFFKNDFFSSLE 1059 (1238)
T ss_pred HHHHHHHHHhhhhhhh-------hhhhhhhhhhhhcchhhHhhhhcccchh------HHHHHhhhhHHHHHHhHHHHHHH
Confidence 4455666665555554 3457899999999999998876542111 11111111111278899999999
Q ss_pred HHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHH-HHhhcccCCCCcccCCChhHHHHHHHHHhhhcCC
Q psy11733 240 YVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAAR-FFLQAHFDYCDFPELLSPNNIATYGGLCALATFD 317 (971)
Q Consensus 240 ~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~-~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~d 317 (971)
...+|-++.++..| .- +-++.++..|+.-+-+.+|. ..+++. .+|+.++..-..||+|...+
T Consensus 1060 ~fe~aLsis~se~d---~v-----vLl~kva~~~g~~~~k~~A~~lLfe~~--------~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1060 FFEQALSISNSESD---KV-----VLLCKVAVCMGLARQKNDAQFLLFEVK--------SLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHHhhhcccccc---hh-----hhhHHHHHHHhhcccchHHHHHHHHHH--------HhCccchhhHHHHHHHHHHh
Confidence 99999888775443 11 22455555665555454544 444432 34566666778888887765
No 301
>KOG3785|consensus
Probab=23.60 E-value=1.7e+02 Score=34.39 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=56.3
Q ss_pred hhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCC
Q psy11733 742 KSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP 818 (971)
Q Consensus 742 k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~r 818 (971)
|.|.++||--.-..-+|.-|+..||+++|+..|+-..++-+.+ ..+++ ++.=.-||.+-+...++-.+||-.+|
T Consensus 48 k~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-~el~v--nLAcc~FyLg~Y~eA~~~~~ka~k~p 121 (557)
T KOG3785|consen 48 KLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP-AELGV--NLACCKFYLGQYIEAKSIAEKAPKTP 121 (557)
T ss_pred hhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC-cccch--hHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 4578887777777788999999999999999999987755554 34444 44445577788888888888887654
No 302
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.36 E-value=1.2e+02 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccC
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCT 782 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdyct 782 (971)
+..+-.-|.+.|+.+.|.+.|..|+++-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 55667788999999999999999987543
No 303
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.23 E-value=1.6e+02 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHH
Q psy11733 728 AMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVI 795 (971)
Q Consensus 728 ~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lI 795 (971)
++++++||..|...++--+-. ---.|-.||-.|.++|+.+.|++-|+.-..--.-++--||.+++-.
T Consensus 50 e~Q~~~le~~~ek~~ak~~~v-pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk~~ 116 (121)
T COG4259 50 EAQTAALEKYLEKIGAKNGAV-PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMKNG 116 (121)
T ss_pred HHHHHHHHHHHHHHhhcCCCC-CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHHcc
Confidence 445556666555444321110 0124678999999999999999999865544566678888877644
No 304
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.96 E-value=1.8e+02 Score=20.78 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDY 210 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdy 210 (971)
.+..+.+.+.+.|+.+.|.+.|..|++.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3566788899999999999999999875
No 305
>KOG1129|consensus
Probab=22.54 E-value=1.4e+02 Score=34.63 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHh
Q psy11733 194 CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAEL 273 (971)
Q Consensus 194 iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L 273 (971)
-|+-+-|+.+|.|+...-..+. +...++=-++++-+.++.++..+.+|.++.+..+. .+-+|---|....
T Consensus 337 ~~~PE~AlryYRRiLqmG~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~-------aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ-------AADVWYNLGFVAV 406 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch-------hhhhhhccceeEE
Confidence 4555666666666544432222 33445555677889999999999999988764331 2233333455567
Q ss_pred hccCHHHHHHHHhhc
Q psy11733 274 ATRKYKTAARFFLQA 288 (971)
Q Consensus 274 ~~r~yk~AA~~FLea 288 (971)
..|+|..|..+|=-+
T Consensus 407 ~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLA 421 (478)
T ss_pred eccchHHHHHHHHHH
Confidence 899999999999765
No 306
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=22.50 E-value=6.3e+02 Score=26.16 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhHHHhhC-CHHHHHHHHHHhhcccCCchhHHHHHHHHH
Q psy11733 747 KESIRRGHDDLGDHYLDCG-DLSNALKCYSRARDYCTNGKHVVDMCLNVI 795 (971)
Q Consensus 747 kesIR~g~~dlg~~y~~iG-Dl~~Alkay~r~rdycts~gh~IDm~l~lI 795 (971)
+|.-=+....+|+-+...| +..+|..+|.++.--|..++..|.++=..+
T Consensus 86 ~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~tl 135 (148)
T TIGR00985 86 KEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQTL 135 (148)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHhhC
Confidence 4455567788999999999 999999999999999999998877654443
No 307
>PF13041 PPR_2: PPR repeat family
Probab=22.27 E-value=1.5e+02 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNG 214 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~ 214 (971)
.+.-+-+.|.+.|++++|.+.|.+|.+.-..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P 36 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKP 36 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 46677889999999999999999998764433
No 308
>KOG3060|consensus
Probab=22.16 E-value=5.6e+02 Score=29.08 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q psy11733 148 LLIETKNKKAAMKLEKLDNDLKNYKSNS-IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIR 226 (971)
Q Consensus 148 ~wie~~~~~n~~~le~Le~eLk~yk~Nl-iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIr 226 (971)
.|-+.+.+ |-+++-+|..++..|.... .+.++..-++...---.++|...-|.+|+.++++.-..+..+.-+ .-++
T Consensus 19 ~wr~~~~r-nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~l--kam~ 95 (289)
T KOG3060|consen 19 KWREETVR-NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKL--KAML 95 (289)
T ss_pred HHHhcccc-CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHH--HHHH
Confidence 67555444 4445555555555554444 678899999999999999999999999999999887555444322 2222
Q ss_pred HHHHhhcHHHHHHHHHHH
Q psy11733 227 VSVYLQNWSHVLSYVNKA 244 (971)
Q Consensus 227 v~I~~~dw~~V~~~v~KA 244 (971)
.. -.++|..+.++++..
T Consensus 96 lE-a~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 96 LE-ATGNYKEAIEYYESL 112 (289)
T ss_pred HH-HhhchhhHHHHHHHH
Confidence 22 258899888888764
No 309
>PLN03077 Protein ECB2; Provisional
Probab=21.71 E-value=9.2e+02 Score=31.05 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHh
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 245 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk 245 (971)
.+..+..-|.+.|++++|++.|.+|+.....++.. .+-.+|......+++....+....+.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~--ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLM--TITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 46667777888888888888888887765444422 23345555556667666665555443
No 310
>KOG3250|consensus
Probab=21.59 E-value=4.2e+02 Score=29.21 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCC-hHHHHHH
Q psy11733 340 QLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT-IQALENE 418 (971)
Q Consensus 340 ~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvs-vd~lE~e 418 (971)
.+-++++-|..+.|..+..--.. -+.|..+-.+ .++.+-+......-+|+--..+-..+.++ +-++|+.
T Consensus 61 a~lrlL~lFa~Gt~~Dy~aea~r-lp~Ls~~q~~---------kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~ 130 (258)
T KOG3250|consen 61 AYLRLLELFAYGTYRDYSAEALR-LPKLSLAQLN---------KLKHLTVVSLASFEKCLPYLVLLRLLPSRNVRELEDL 130 (258)
T ss_pred HHHHHHHHHhcCchhhhhhhhhc-CCCCCHHHHH---------hhhcceehhhhhhchhhhHHHHHhhccCCchhHHHHH
Confidence 36678888999999876542211 1223322222 12222222222222333334455566664 6789999
Q ss_pred HHHHHHcCceeEEEcCCCCEEEEc---cCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11733 419 LMTLILDGQIQARIDSHNKILYAK---QQDQRSTTFEKSLNVGKEYARKSNMLIL 470 (971)
Q Consensus 419 Lv~LI~dgrL~ARIDsvngiL~~~---~~D~R~~~yq~alk~gd~l~~~a~~lll 470 (971)
|+...-.+-|.||||+.|..++.. ..|-|......+..+-+++.++...+++
T Consensus 131 iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cenvL~ 185 (258)
T KOG3250|consen 131 IIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCENVLF 185 (258)
T ss_pred HHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 3466667777777777777777666654
No 311
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=20.97 E-value=2.1e+02 Score=23.58 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHhccccce-ecHHhHHHHhCCChHHHHHHHHHHHHcCce
Q psy11733 385 RNRALIQYFSPYLS-ADLNKMSVAFNTTIQALENELMTLILDGQI 428 (971)
Q Consensus 385 R~kaliQYl~PYss-V~L~~MA~aFgvsvd~lE~eLv~LI~dgrL 428 (971)
|.-.+..+|..... +++..+|+.+|++...+-+-|..|...|-+
T Consensus 4 ral~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v 48 (52)
T PF09339_consen 4 RALRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYV 48 (52)
T ss_dssp HHHHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence 33445555555555 899999999999999999999999988865
No 312
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=20.73 E-value=2.1e+02 Score=30.25 Aligned_cols=79 Identities=16% Similarity=0.362 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHH
Q psy11733 340 QLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENEL 419 (971)
Q Consensus 340 ~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eL 419 (971)
.+.+++.++.+++|..+-..+.++.. +-...+.+.++++......++.|+.+-++-.++..+.--.+.++.-.
T Consensus 26 ~~~e~l~~~~~~~~~~~~~~~~~i~~-------lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a 98 (214)
T PF01865_consen 26 LLAELLEAYLEGDYEDVEELLEEIKE-------LEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAA 98 (214)
T ss_dssp CHHHHHHHHCTT-CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888777766666543 24568999999999999999999999999999999877777777777
Q ss_pred HHHHHc
Q psy11733 420 MTLILD 425 (971)
Q Consensus 420 v~LI~d 425 (971)
..+..-
T Consensus 99 ~~l~~~ 104 (214)
T PF01865_consen 99 KRLSLY 104 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 313
>PLN03218 maturation of RBCL 1; Provisional
Probab=20.39 E-value=2.2e+03 Score=29.01 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+...|.+.|++++|.+.|.+|...-..++ ...+-.+|......+++..+...+.+....--. . +..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-p----d~~-- 685 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-L----GTV-- 685 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHH--
Confidence 4577888889999999999999999887654444 224446677777788888888888877643110 1 111
Q ss_pred HHHHHHHHH--HHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHh-hhcCChHHHHHhccCChhhhhhhccc
Q psy11733 262 TKLKVAAGL--AELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCA-LATFDRSELEKQVIFSSGFKLFLELE 338 (971)
Q Consensus 262 ~kLk~~~GL--~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~Lca-LaS~dR~eLK~kVlds~efr~~Le~e 338 (971)
.+..| ++...|+++.|.+.|-+.. ... +.| |+..|..|.. .....+-+--..+++.-.-..+....
T Consensus 686 ----tynsLI~ay~k~G~~eeA~~lf~eM~-~~g-----~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 686 ----SYSSLMGACSNAKNWKKALELYEDIK-SIK-----LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHH-HcC-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 12222 3456788888888887652 111 112 2333333322 22222221111222210000111111
Q ss_pred hHHHHHHHHHH-hCCHHHHHHHHHHHHH-hcccccchHHhHHHHH
Q psy11733 339 PQLRDILVQFY-NSKYATCLNLLAQIMD-NLLLDMYIAPHVNTLY 381 (971)
Q Consensus 339 P~lr~lI~aF~-~~~Y~~~l~~L~~~~~-~LllD~yL~~Hv~~L~ 381 (971)
.-+.-++..+. .+++..+.+++..... -+..|.+....+-.++
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 22555666654 5678888888887754 4666766555444443
No 314
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=20.39 E-value=5e+02 Score=23.08 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=36.7
Q ss_pred hccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCC
Q psy11733 392 YFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN 436 (971)
Q Consensus 392 Yl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvn 436 (971)
.+.....++.+.+|+.++++...+-+-|..|...|-+...-|..+
T Consensus 18 ~l~~~~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~ 62 (101)
T smart00347 18 ILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPED 62 (101)
T ss_pred HHHHcCCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCC
Confidence 333344689999999999999999999999999999987666443
No 315
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=20.36 E-value=86 Score=25.25 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=22.9
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcC
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDG 426 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dg 426 (971)
.|..++..+.. -.+...+|+.||+|...+-+|+.++=..|
T Consensus 6 ~R~~ii~l~~~---G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 6 RRAQIIRLLRE---GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp ----HHHHHHH---T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 45555555554 67889999999999999999998876655
No 316
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=20.15 E-value=1.8e+02 Score=35.67 Aligned_cols=59 Identities=24% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
-++|.-+|.++...|+.++|...|.++..-.++.- ...++.=++|+.|.+.|.-|+.++
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p-----t~~~~~~~~f~~~~~~~~~~~~~~ 511 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN-----TLYWIENLVFQTSVETVVPYLYRF 511 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHhccccccHHHHHHHHHhc
Confidence 47999999999999999999999999876554432 477888899999999998887765
Done!