Query psy11733
Match_columns 971
No_of_seqs 409 out of 920
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 3.3E-59 1.1E-63 535.1 20.2 372 56-468 41-417 (429)
2 3txn_A 26S proteasome regulato 100.0 6.9E-41 2.4E-45 379.4 23.8 283 185-474 103-392 (394)
3 4b4t_R RPN7, 26S proteasome re 100.0 6.3E-38 2.2E-42 359.0 5.4 274 614-923 26-423 (429)
4 4b4t_Q 26S proteasome regulato 99.9 1.8E-25 6.1E-30 246.9 26.1 300 171-475 125-433 (434)
5 4b4t_P 26S proteasome regulato 99.9 1.2E-22 4.3E-27 233.7 20.6 281 163-453 117-414 (445)
6 4b4t_O 26S proteasome regulato 99.7 6.9E-16 2.4E-20 175.1 19.3 256 189-454 84-363 (393)
7 3txn_A 26S proteasome regulato 99.5 7.8E-14 2.7E-18 158.3 15.4 166 756-921 104-390 (394)
8 3t5x_A PCI domain-containing p 99.2 7.9E-11 2.7E-15 122.5 15.6 168 261-445 13-194 (203)
9 1ufm_A COP9 complex subunit 4; 99.2 1.7E-11 6E-16 110.5 5.3 73 375-447 7-79 (84)
10 4b4t_S RPN3, 26S proteasome re 99.1 1E-09 3.5E-14 127.7 18.6 212 220-443 233-447 (523)
11 3t5v_B Nuclear mRNA export pro 98.8 5.4E-08 1.8E-12 112.4 18.5 242 196-444 141-429 (455)
12 4b4t_Q 26S proteasome regulato 98.8 4.3E-08 1.5E-12 107.9 15.0 174 750-923 134-432 (434)
13 4b4t_P 26S proteasome regulato 98.4 5.2E-07 1.8E-11 103.9 11.3 182 733-914 117-426 (445)
14 3chm_A COP9 signalosome comple 97.8 0.00011 3.6E-09 74.5 11.1 99 339-447 60-160 (169)
15 4b4t_O 26S proteasome regulato 97.4 0.00047 1.6E-08 78.1 11.5 75 836-910 248-370 (393)
16 1qqe_A Vesicular transport pro 97.2 0.039 1.3E-06 58.3 22.1 185 178-373 74-273 (292)
17 4gco_A Protein STI-1; structur 96.9 0.008 2.7E-07 56.0 12.1 100 176-288 8-107 (126)
18 4gcn_A Protein STI-1; structur 96.9 0.0089 3.1E-07 55.6 12.4 103 179-288 6-109 (127)
19 3ro3_A PINS homolog, G-protein 96.9 0.019 6.6E-07 52.2 14.2 124 161-288 29-155 (164)
20 3gw4_A Uncharacterized protein 96.8 0.019 6.4E-07 55.5 14.5 129 156-288 41-173 (203)
21 4b0z_A RPN12, 26S proteasome r 96.7 0.12 4.1E-06 54.3 20.1 74 343-421 140-214 (229)
22 1ufm_A COP9 complex subunit 4; 96.6 0.002 6.7E-08 58.0 5.4 36 862-897 45-80 (84)
23 2ifu_A Gamma-SNAP; membrane fu 96.5 0.5 1.7E-05 50.1 24.4 106 178-288 113-221 (307)
24 3ro2_A PINS homolog, G-protein 96.5 0.34 1.1E-05 49.4 22.0 123 162-288 164-289 (338)
25 3ro2_A PINS homolog, G-protein 96.5 0.29 1E-05 49.9 21.2 121 164-288 206-329 (338)
26 3ro3_A PINS homolog, G-protein 96.4 0.028 9.5E-07 51.1 11.6 106 179-288 7-115 (164)
27 3sf4_A G-protein-signaling mod 96.4 0.41 1.4E-05 50.8 22.4 124 161-288 167-293 (406)
28 3qky_A Outer membrane assembly 96.3 0.26 9E-06 50.3 19.9 101 181-288 15-123 (261)
29 3sf4_A G-protein-signaling mod 96.3 0.43 1.5E-05 50.7 22.0 123 162-288 208-333 (406)
30 2xev_A YBGF; tetratricopeptide 96.1 0.052 1.8E-06 48.6 11.9 99 183-288 4-102 (129)
31 3rkv_A Putative peptidylprolyl 96.1 0.027 9.2E-07 53.6 10.5 99 180-288 10-123 (162)
32 1elr_A TPR2A-domain of HOP; HO 96.1 0.072 2.5E-06 46.9 12.3 102 181-288 4-105 (131)
33 3vtx_A MAMA; tetratricopeptide 96.0 0.36 1.2E-05 46.1 18.1 93 183-288 7-99 (184)
34 4a1s_A PINS, partner of inscut 96.0 0.43 1.5E-05 51.4 20.3 120 165-288 207-329 (411)
35 3upv_A Heat shock protein STI1 95.9 0.068 2.3E-06 48.3 11.8 94 182-288 5-98 (126)
36 2dba_A Smooth muscle cell asso 95.9 0.041 1.4E-06 50.0 10.3 97 182-288 29-125 (148)
37 3nf1_A KLC 1, kinesin light ch 95.9 0.48 1.6E-05 48.2 19.4 109 178-288 108-221 (311)
38 2ifu_A Gamma-SNAP; membrane fu 95.8 0.13 4.6E-06 54.6 15.4 107 177-288 72-181 (307)
39 4ga2_A E3 SUMO-protein ligase 95.8 0.059 2E-06 51.3 11.3 98 178-288 28-125 (150)
40 3edt_B KLC 2, kinesin light ch 95.8 0.079 2.7E-06 53.1 12.6 109 178-288 40-153 (283)
41 3uq3_A Heat shock protein STI1 95.8 0.63 2.1E-05 46.0 19.1 101 180-288 4-105 (258)
42 1wi9_A Protein C20ORF116 homol 95.7 0.019 6.3E-07 50.1 6.5 58 387-444 10-67 (72)
43 3gyz_A Chaperone protein IPGC; 95.7 0.14 4.9E-06 49.7 13.7 100 176-288 31-130 (151)
44 3q49_B STIP1 homology and U bo 95.7 0.1 3.4E-06 47.2 11.9 95 181-288 9-103 (137)
45 3ulq_A Response regulator aspa 95.7 0.13 4.6E-06 55.6 14.9 124 161-288 123-250 (383)
46 1elw_A TPR1-domain of HOP; HOP 95.7 0.13 4.3E-06 44.4 12.0 94 182-288 5-98 (118)
47 4a1s_A PINS, partner of inscut 95.7 0.63 2.2E-05 50.1 20.1 121 164-288 246-369 (411)
48 3u4t_A TPR repeat-containing p 95.6 0.91 3.1E-05 45.6 20.0 160 183-366 5-171 (272)
49 3sz7_A HSC70 cochaperone (SGT) 95.6 0.088 3E-06 50.0 11.8 96 180-288 10-105 (164)
50 3ulq_A Response regulator aspa 95.6 0.44 1.5E-05 51.5 18.7 124 161-288 163-290 (383)
51 3q15_A PSP28, response regulat 95.6 0.13 4.4E-06 55.9 14.2 121 164-288 124-248 (378)
52 1qqe_A Vesicular transport pro 95.6 1.6 5.4E-05 45.8 22.3 108 178-288 114-225 (292)
53 1a17_A Serine/threonine protei 95.6 0.14 4.9E-06 47.3 12.7 96 180-288 12-107 (166)
54 2lni_A Stress-induced-phosphop 95.6 0.076 2.6E-06 47.1 10.4 96 180-288 15-110 (133)
55 2vyi_A SGTA protein; chaperone 95.5 0.19 6.3E-06 44.0 12.6 97 179-288 10-106 (131)
56 2qfc_A PLCR protein; TPR, HTH, 95.5 0.09 3.1E-06 55.2 12.3 124 161-288 135-263 (293)
57 3gw4_A Uncharacterized protein 95.5 0.072 2.5E-06 51.3 10.5 107 179-288 24-133 (203)
58 3edt_B KLC 2, kinesin light ch 95.4 0.18 6.3E-06 50.4 13.7 109 178-288 82-195 (283)
59 4i17_A Hypothetical protein; T 95.4 0.66 2.3E-05 46.0 17.6 101 182-288 43-143 (228)
60 3ieg_A DNAJ homolog subfamily 95.3 0.8 2.7E-05 47.4 18.7 94 182-288 4-97 (359)
61 2fbn_A 70 kDa peptidylprolyl i 95.3 0.15 5.2E-06 50.0 12.5 98 181-288 38-148 (198)
62 2ho1_A Type 4 fimbrial biogene 95.2 2 6.8E-05 42.6 20.6 97 181-288 71-167 (252)
63 2qfc_A PLCR protein; TPR, HTH, 95.2 0.21 7E-06 52.4 13.8 105 181-288 115-222 (293)
64 2vq2_A PILW, putative fimbrial 95.2 2.4 8.1E-05 40.7 21.4 95 181-288 8-103 (225)
65 3u3w_A Transcriptional activat 95.2 0.14 4.9E-06 53.6 12.5 124 161-288 135-263 (293)
66 3q15_A PSP28, response regulat 95.1 0.15 5.1E-06 55.4 13.0 126 158-288 158-287 (378)
67 2fo7_A Synthetic consensus TPR 95.1 0.22 7.4E-06 43.5 11.7 94 182-288 2-95 (136)
68 3nf1_A KLC 1, kinesin light ch 95.1 0.22 7.4E-06 50.9 13.2 110 177-288 65-179 (311)
69 2vgx_A Chaperone SYCD; alterna 95.0 0.26 8.9E-06 46.8 12.6 98 178-288 18-115 (148)
70 4g1t_A Interferon-induced prot 94.9 0.12 4.2E-06 57.0 11.7 109 178-288 48-164 (472)
71 2c2l_A CHIP, carboxy terminus 94.9 0.17 5.9E-06 53.3 12.4 94 182-288 5-98 (281)
72 2kck_A TPR repeat; tetratricop 94.9 0.15 5E-06 43.6 9.8 95 183-288 8-103 (112)
73 1na0_A Designed protein CTPR3; 94.9 0.29 9.9E-06 42.4 11.8 95 181-288 9-103 (125)
74 2xcb_A PCRH, regulatory protei 94.8 0.33 1.1E-05 45.1 12.6 98 178-288 15-112 (142)
75 2ho1_A Type 4 fimbrial biogene 94.7 2.4 8.1E-05 42.1 19.6 95 181-288 37-131 (252)
76 3qky_A Outer membrane assembly 94.7 0.25 8.4E-06 50.5 12.4 105 181-288 52-174 (261)
77 2l6j_A TPR repeat-containing p 94.6 0.088 3E-06 45.7 7.7 96 182-284 5-100 (111)
78 3u3w_A Transcriptional activat 94.6 0.32 1.1E-05 51.0 13.3 104 182-288 116-222 (293)
79 3uq3_A Heat shock protein STI1 94.5 0.57 1.9E-05 46.3 14.3 98 178-288 136-233 (258)
80 4i17_A Hypothetical protein; T 94.3 4.2 0.00014 40.1 20.3 95 182-288 8-102 (228)
81 1hh8_A P67PHOX, NCF-2, neutrop 94.2 0.41 1.4E-05 46.6 12.4 103 182-288 38-147 (213)
82 2fo7_A Synthetic consensus TPR 94.1 0.48 1.7E-05 41.2 11.4 94 182-288 36-129 (136)
83 3u4t_A TPR repeat-containing p 94.0 0.38 1.3E-05 48.5 11.9 63 181-246 74-136 (272)
84 3as5_A MAMA; tetratricopeptide 94.0 0.5 1.7E-05 43.9 11.9 94 182-288 43-136 (186)
85 1kt0_A FKBP51, 51 kDa FK506-bi 93.9 0.44 1.5E-05 54.1 13.5 100 179-288 266-377 (457)
86 2q7f_A YRRB protein; TPR, prot 93.8 2.3 7.8E-05 41.6 17.0 95 181-288 57-151 (243)
87 2e2e_A Formate-dependent nitri 93.7 0.48 1.6E-05 45.1 11.4 94 182-288 45-141 (177)
88 2vq2_A PILW, putative fimbrial 93.7 0.52 1.8E-05 45.5 11.8 96 182-288 77-173 (225)
89 2hr2_A Hypothetical protein; a 93.6 0.76 2.6E-05 45.8 13.0 105 181-288 11-128 (159)
90 2y4t_A DNAJ homolog subfamily 93.6 3 0.0001 45.2 19.1 95 181-288 26-120 (450)
91 1p5q_A FKBP52, FK506-binding p 93.6 0.45 1.5E-05 51.7 12.4 100 179-288 145-256 (336)
92 3t5x_A PCI domain-containing p 93.6 0.54 1.9E-05 48.5 12.3 145 750-894 13-194 (203)
93 1xnf_A Lipoprotein NLPI; TPR, 93.5 0.97 3.3E-05 45.3 14.0 98 178-288 40-137 (275)
94 4abn_A Tetratricopeptide repea 93.5 4.1 0.00014 46.2 20.6 94 181-288 102-205 (474)
95 1a17_A Serine/threonine protei 93.4 0.52 1.8E-05 43.4 10.9 97 181-288 47-143 (166)
96 1hz4_A MALT regulatory protein 93.2 1.6 5.4E-05 46.6 15.8 124 162-288 114-241 (373)
97 3hym_B Cell division cycle pro 93.2 5.6 0.00019 40.6 19.4 95 181-288 125-219 (330)
98 3ieg_A DNAJ homolog subfamily 93.2 4.3 0.00015 41.8 18.6 97 182-288 72-180 (359)
99 3as5_A MAMA; tetratricopeptide 93.1 0.78 2.7E-05 42.5 11.6 95 181-288 76-170 (186)
100 1ihg_A Cyclophilin 40; ppiase 92.9 0.5 1.7E-05 52.4 11.6 98 181-288 223-333 (370)
101 2q7f_A YRRB protein; TPR, prot 92.9 0.66 2.3E-05 45.6 11.3 95 181-288 91-185 (243)
102 3vtx_A MAMA; tetratricopeptide 92.6 0.89 3.1E-05 43.3 11.6 95 181-288 39-133 (184)
103 2gw1_A Mitochondrial precursor 92.6 0.77 2.6E-05 50.6 12.5 95 180-288 5-99 (514)
104 4gco_A Protein STI-1; structur 92.6 0.37 1.3E-05 44.5 8.5 65 749-816 11-75 (126)
105 3hym_B Cell division cycle pro 92.5 10 0.00034 38.7 20.1 94 182-288 91-185 (330)
106 3cv0_A Peroxisome targeting si 92.3 3.7 0.00013 41.9 16.5 93 183-288 23-115 (327)
107 2yhc_A BAMD, UPF0169 lipoprote 92.1 1.7 5.7E-05 43.6 13.3 104 181-288 41-173 (225)
108 1hz4_A MALT regulatory protein 92.0 2.9 9.8E-05 44.6 15.8 123 161-288 73-200 (373)
109 2xev_A YBGF; tetratricopeptide 92.0 0.59 2E-05 41.5 8.8 66 182-247 40-105 (129)
110 2if4_A ATFKBP42; FKBP-like, al 92.0 0.34 1.2E-05 52.7 8.6 97 182-288 180-290 (338)
111 2yhc_A BAMD, UPF0169 lipoprote 91.9 1.1 3.6E-05 45.1 11.6 66 182-247 5-70 (225)
112 1hxi_A PEX5, peroxisome target 91.8 0.89 3.1E-05 41.5 10.0 92 184-288 20-111 (121)
113 1hh8_A P67PHOX, NCF-2, neutrop 91.7 0.62 2.1E-05 45.3 9.3 90 183-288 8-97 (213)
114 2pl2_A Hypothetical conserved 91.6 0.71 2.4E-05 46.2 9.9 95 180-288 117-211 (217)
115 1fch_A Peroxisomal targeting s 91.6 15 0.0005 38.4 20.9 65 180-247 97-161 (368)
116 3urz_A Uncharacterized protein 91.3 3.3 0.00011 41.0 14.4 94 182-288 5-114 (208)
117 4eqf_A PEX5-related protein; a 91.2 0.98 3.3E-05 47.9 11.0 95 181-288 213-307 (365)
118 2pl2_A Hypothetical conserved 91.1 1.4 4.7E-05 44.2 11.4 95 181-288 39-144 (217)
119 1fch_A Peroxisomal targeting s 91.0 1.3 4.5E-05 46.6 11.7 95 181-288 217-311 (368)
120 3cv0_A Peroxisome targeting si 90.9 1.5 5.2E-05 44.9 11.8 95 181-288 172-266 (327)
121 2gw1_A Mitochondrial precursor 90.1 8.1 0.00028 42.3 17.4 64 181-247 270-333 (514)
122 2y4t_A DNAJ homolog subfamily 90.1 1.9 6.6E-05 46.7 12.3 101 182-288 212-321 (450)
123 3fp2_A TPR repeat-containing p 89.9 1.1 3.7E-05 49.9 10.3 95 178-285 22-116 (537)
124 4eqf_A PEX5-related protein; a 89.5 1.8 6.3E-05 45.7 11.3 93 183-288 67-159 (365)
125 4ga2_A E3 SUMO-protein ligase 89.3 0.48 1.6E-05 44.9 5.9 90 186-288 2-91 (150)
126 4f3v_A ESX-1 secretion system 88.9 3.7 0.00013 44.5 13.2 124 181-319 102-225 (282)
127 3n71_A Histone lysine methyltr 88.9 3.5 0.00012 47.8 13.9 123 164-288 332-461 (490)
128 2xpi_A Anaphase-promoting comp 88.8 2.2 7.7E-05 48.3 12.0 97 182-288 476-576 (597)
129 4gyw_A UDP-N-acetylglucosamine 88.7 1.9 6.5E-05 52.5 12.0 62 181-245 43-104 (723)
130 4gcn_A Protein STI-1; structur 88.7 1.4 4.9E-05 40.4 8.5 65 749-816 6-70 (127)
131 1na3_A Designed protein CTPR2; 88.6 1.9 6.6E-05 35.5 8.6 64 181-247 9-72 (91)
132 3k9i_A BH0479 protein; putativ 88.6 2.2 7.4E-05 38.1 9.5 68 177-247 23-90 (117)
133 3mkr_A Coatomer subunit epsilo 88.6 20 0.00068 37.7 18.5 57 183-247 103-159 (291)
134 1xnf_A Lipoprotein NLPI; TPR, 88.4 2.6 9.1E-05 42.0 11.0 93 182-288 78-170 (275)
135 3ma5_A Tetratricopeptide repea 88.2 1.9 6.4E-05 37.8 8.6 64 182-248 8-71 (100)
136 2vyi_A SGTA protein; chaperone 88.2 3 0.0001 36.1 9.9 64 181-247 46-109 (131)
137 3fp2_A TPR repeat-containing p 87.9 3.1 0.00011 46.2 12.2 92 184-288 313-404 (537)
138 1elr_A TPR2A-domain of HOP; HO 87.7 1.7 5.7E-05 37.9 8.0 66 182-247 39-108 (131)
139 4b4t_T 26S proteasome regulato 87.5 1.9 6.5E-05 46.5 9.8 157 266-428 63-226 (274)
140 1w3b_A UDP-N-acetylglucosamine 87.2 4.7 0.00016 43.0 12.7 95 181-288 237-331 (388)
141 4gyw_A UDP-N-acetylglucosamine 87.2 1.8 6.2E-05 52.6 10.4 62 182-246 10-71 (723)
142 2kck_A TPR repeat; tetratricop 87.1 1.4 4.8E-05 37.3 7.0 65 182-247 41-106 (112)
143 2v5f_A Prolyl 4-hydroxylase su 87.0 2.4 8.2E-05 37.9 8.7 64 184-247 8-75 (104)
144 1rz4_A Eukaryotic translation 87.0 1.6 5.4E-05 45.9 8.5 74 341-421 102-176 (226)
145 3urz_A Uncharacterized protein 86.9 5.7 0.0002 39.2 12.3 61 184-247 57-117 (208)
146 2dba_A Smooth muscle cell asso 86.7 2.1 7.3E-05 38.4 8.3 61 751-814 65-125 (148)
147 1w3b_A UDP-N-acetylglucosamine 86.6 3.1 0.00011 44.5 10.9 96 180-288 66-161 (388)
148 1xn7_A Hypothetical protein YH 86.5 0.67 2.3E-05 40.9 4.5 46 387-433 5-50 (78)
149 1ouv_A Conserved hypothetical 86.2 5.4 0.00019 40.4 12.0 90 182-288 7-104 (273)
150 3k9i_A BH0479 protein; putativ 86.1 0.93 3.2E-05 40.5 5.5 86 193-288 2-87 (117)
151 2vsy_A XCC0866; transferase, g 85.9 3.5 0.00012 47.4 11.5 93 183-288 25-117 (568)
152 2h6f_A Protein farnesyltransfe 85.9 12 0.0004 41.7 15.5 96 180-288 130-226 (382)
153 3mkr_A Coatomer subunit epsilo 85.8 37 0.0013 35.5 22.9 117 156-288 109-226 (291)
154 4abn_A Tetratricopeptide repea 85.7 1.8 6E-05 49.2 8.8 94 181-288 137-247 (474)
155 2kat_A Uncharacterized protein 85.2 3.4 0.00012 36.3 8.7 63 182-247 20-82 (115)
156 2lni_A Stress-induced-phosphop 85.0 5.9 0.0002 34.5 10.2 64 181-247 50-113 (133)
157 3rkv_A Putative peptidylprolyl 84.7 1.5 5.2E-05 41.2 6.5 67 750-816 10-91 (162)
158 2l6j_A TPR repeat-containing p 84.5 3 0.0001 35.7 7.8 62 752-816 5-66 (111)
159 1p5q_A FKBP52, FK506-binding p 84.5 8.3 0.00028 41.6 13.1 94 181-287 196-289 (336)
160 1na3_A Designed protein CTPR2; 84.3 3.3 0.00011 34.0 7.8 63 751-816 9-71 (91)
161 2k02_A Ferrous iron transport 84.1 0.85 2.9E-05 41.2 4.1 44 387-430 5-48 (87)
162 3upv_A Heat shock protein STI1 83.3 4.3 0.00015 36.1 8.6 63 182-247 39-101 (126)
163 1wao_1 Serine/threonine protei 83.3 1.1 3.9E-05 51.2 5.8 93 183-288 8-100 (477)
164 3sz7_A HSC70 cochaperone (SGT) 82.7 4.1 0.00014 38.2 8.6 64 181-247 45-108 (164)
165 1kt0_A FKBP51, 51 kDa FK506-bi 82.6 11 0.00036 42.7 13.5 98 180-290 316-413 (457)
166 1na0_A Designed protein CTPR3; 82.6 5.2 0.00018 34.1 8.6 63 182-247 44-106 (125)
167 1elw_A TPR1-domain of HOP; HOP 82.2 5.4 0.00019 33.7 8.5 64 181-247 38-101 (118)
168 2vsy_A XCC0866; transferase, g 82.0 7 0.00024 44.8 11.9 95 181-288 57-154 (568)
169 2xcb_A PCRH, regulatory protei 81.6 5 0.00017 36.9 8.6 64 181-247 52-115 (142)
170 1xi4_A Clathrin heavy chain; a 81.6 14 0.00049 48.4 15.2 108 144-287 1168-1275(1630)
171 2jt1_A PEFI protein; solution 81.5 1.6 5.3E-05 38.5 4.7 45 385-429 5-55 (77)
172 3mv2_B Coatomer subunit epsilo 81.1 4.8 0.00016 44.2 9.5 180 183-376 102-292 (310)
173 2xpi_A Anaphase-promoting comp 81.1 76 0.0026 35.6 40.4 92 182-288 85-176 (597)
174 3q49_B STIP1 homology and U bo 81.1 5.5 0.00019 35.5 8.5 64 181-247 43-106 (137)
175 4b4t_S RPN3, 26S proteasome re 81.1 9.1 0.00031 44.9 12.2 52 754-805 273-328 (523)
176 3gyz_A Chaperone protein IPGC; 80.8 5.2 0.00018 38.5 8.7 103 143-248 29-134 (151)
177 1ouv_A Conserved hypothetical 80.0 13 0.00045 37.5 11.9 90 182-288 39-140 (273)
178 2pzi_A Probable serine/threoni 80.0 6.9 0.00024 46.7 11.2 65 180-247 432-496 (681)
179 1hxi_A PEX5, peroxisome target 79.8 5.9 0.0002 35.9 8.3 63 181-246 51-113 (121)
180 2ond_A Cleavage stimulation fa 79.7 13 0.00043 39.0 12.0 93 181-288 99-195 (308)
181 2vgx_A Chaperone SYCD; alterna 79.3 6.4 0.00022 37.0 8.6 64 181-247 55-118 (148)
182 1ihg_A Cyclophilin 40; ppiase 78.8 11 0.00038 41.5 11.7 69 176-247 268-336 (370)
183 3ma5_A Tetratricopeptide repea 78.1 6.2 0.00021 34.3 7.6 62 752-816 8-69 (100)
184 3n71_A Histone lysine methyltr 77.8 11 0.00039 43.5 11.8 102 185-288 313-419 (490)
185 2kc7_A BFR218_protein; tetratr 77.8 4.6 0.00016 34.2 6.6 61 184-247 3-64 (99)
186 3qww_A SET and MYND domain-con 77.4 19 0.00066 40.9 13.4 89 163-251 320-415 (433)
187 3qou_A Protein YBBN; thioredox 77.4 8 0.00028 40.4 9.6 103 182-288 118-245 (287)
188 1wao_1 Serine/threonine protei 76.4 8.3 0.00028 44.0 10.0 95 181-286 40-134 (477)
189 1qgp_A Protein (double strande 76.3 8.9 0.0003 33.3 7.9 56 389-445 19-77 (77)
190 2kat_A Uncharacterized protein 75.9 7.8 0.00027 33.9 7.7 62 752-816 20-81 (115)
191 2fbn_A 70 kDa peptidylprolyl i 75.3 10 0.00035 36.6 9.1 66 751-816 38-116 (198)
192 3tqn_A Transcriptional regulat 74.4 7.4 0.00025 35.9 7.3 65 377-443 11-76 (113)
193 3t5v_B Nuclear mRNA export pro 74.3 8.3 0.00028 44.5 9.2 145 749-893 218-429 (455)
194 2v5f_A Prolyl 4-hydroxylase su 74.2 7.1 0.00024 34.7 7.0 73 754-826 8-85 (104)
195 3rjv_A Putative SEL1 repeat pr 73.7 13 0.00045 36.9 9.6 90 181-288 18-115 (212)
196 2b0l_A GTP-sensing transcripti 72.8 10 0.00035 34.7 7.7 62 380-442 23-87 (102)
197 2h6f_A Protein farnesyltransfe 72.6 12 0.00042 41.5 9.9 99 177-288 93-192 (382)
198 4ham_A LMO2241 protein; struct 72.1 27 0.00091 33.0 10.8 66 377-444 16-82 (134)
199 3by6_A Predicted transcription 71.4 8.3 0.00028 36.4 7.0 64 377-442 13-77 (126)
200 2ond_A Cleavage stimulation fa 70.6 8.1 0.00028 40.5 7.5 65 752-816 204-269 (308)
201 1qbj_A Protein (double-strande 68.2 12 0.00042 33.0 6.9 55 389-444 15-72 (81)
202 3neu_A LIN1836 protein; struct 66.9 11 0.00038 35.4 6.8 65 376-442 14-79 (125)
203 4g1t_A Interferon-induced prot 66.6 11 0.00037 41.2 7.8 84 733-816 33-122 (472)
204 3qww_A SET and MYND domain-con 66.5 29 0.001 39.4 11.5 95 192-288 309-408 (433)
205 3qwp_A SET and MYND domain-con 65.7 37 0.0013 38.4 12.2 84 168-251 314-404 (429)
206 2r5s_A Uncharacterized protein 65.5 28 0.00096 32.9 9.6 98 178-288 37-134 (176)
207 1xi4_A Clathrin heavy chain; a 65.1 15 0.00052 48.1 9.5 62 179-248 1103-1164(1630)
208 2kc7_A BFR218_protein; tetratr 64.9 12 0.00043 31.4 6.3 64 754-820 3-68 (99)
209 2e2e_A Formate-dependent nitri 64.4 45 0.0015 31.1 10.8 64 182-248 79-145 (177)
210 2ek5_A Predicted transcription 62.3 14 0.00048 35.0 6.6 64 377-442 6-70 (129)
211 2pzi_A Probable serine/threoni 62.3 19 0.00064 42.9 9.3 94 181-288 467-560 (681)
212 3chm_A COP9 signalosome comple 62.1 13 0.00046 37.2 6.7 77 819-896 41-160 (169)
213 2ooe_A Cleavage stimulation fa 62.1 43 0.0015 37.8 11.8 96 181-288 321-417 (530)
214 3qwp_A SET and MYND domain-con 61.2 35 0.0012 38.6 10.9 104 182-288 289-397 (429)
215 3c7j_A Transcriptional regulat 61.0 13 0.00046 38.5 6.8 66 374-441 25-90 (237)
216 3rjv_A Putative SEL1 repeat pr 60.8 37 0.0013 33.5 9.8 94 181-288 50-155 (212)
217 3mkq_A Coatomer beta'-subunit; 60.7 54 0.0019 38.5 12.8 104 156-289 660-763 (814)
218 1v4r_A Transcriptional repress 60.6 4.4 0.00015 36.5 2.6 65 377-443 13-78 (102)
219 4f3v_A ESX-1 secretion system 58.6 35 0.0012 36.8 9.7 98 183-288 137-234 (282)
220 2heo_A Z-DNA binding protein 1 57.9 13 0.00045 31.2 5.0 47 383-430 10-57 (67)
221 2r5s_A Uncharacterized protein 57.4 23 0.00078 33.6 7.3 63 181-244 108-170 (176)
222 2oo2_A Hypothetical protein AF 57.0 24 0.00081 31.8 6.6 56 720-777 4-61 (86)
223 2if4_A ATFKBP42; FKBP-like, al 54.4 22 0.00076 38.2 7.4 63 182-247 231-293 (338)
224 1sfx_A Conserved hypothetical 53.4 66 0.0022 27.8 9.2 39 396-434 32-70 (109)
225 2c2l_A CHIP, carboxy terminus 52.3 32 0.0011 35.8 8.0 62 182-246 39-100 (281)
226 2pmr_A Uncharacterized protein 51.8 35 0.0012 30.7 6.9 54 724-777 6-65 (87)
227 3t5v_A Nuclear mRNA export pro 51.7 14 0.00049 40.5 5.3 69 351-428 177-251 (316)
228 2ooe_A Cleavage stimulation fa 51.4 23 0.00079 40.0 7.2 65 752-816 426-491 (530)
229 3ihu_A Transcriptional regulat 50.8 26 0.0009 35.6 6.9 64 377-442 18-81 (222)
230 3sxy_A Transcriptional regulat 50.3 26 0.00088 35.5 6.7 64 377-442 14-77 (218)
231 2hr2_A Hypothetical protein; a 50.2 53 0.0018 32.4 8.7 66 750-815 10-84 (159)
232 2htj_A P fimbrial regulatory p 49.4 26 0.00087 30.0 5.6 40 391-430 7-46 (81)
233 2oo2_A Hypothetical protein AF 49.4 39 0.0013 30.4 6.8 56 150-207 4-61 (86)
234 2xm6_A Protein corresponding t 49.4 98 0.0033 34.4 11.9 91 181-288 75-177 (490)
235 2xm6_A Protein corresponding t 49.0 97 0.0033 34.4 11.8 90 182-288 40-141 (490)
236 3mv2_B Coatomer subunit epsilo 48.6 1.7E+02 0.0059 31.8 13.3 123 153-286 105-235 (310)
237 2hs5_A Putative transcriptiona 47.9 35 0.0012 35.3 7.3 64 377-442 30-93 (239)
238 3ic7_A Putative transcriptiona 45.3 11 0.00038 35.5 2.8 64 377-442 13-77 (126)
239 1b89_A Protein (clathrin heavy 45.2 34 0.0012 39.4 7.2 102 184-315 151-252 (449)
240 2d1h_A ST1889, 109AA long hypo 44.8 1.3E+02 0.0045 25.9 9.7 50 387-436 25-74 (109)
241 1hw1_A FADR, fatty acid metabo 44.4 37 0.0013 34.7 6.8 63 377-441 9-72 (239)
242 3ax2_A Mitochondrial import re 43.7 34 0.0011 29.9 5.3 45 178-222 14-58 (73)
243 1klx_A Cysteine rich protein B 42.9 72 0.0025 29.4 8.1 62 181-247 57-126 (138)
244 3edp_A LIN2111 protein; APC883 41.3 43 0.0015 34.7 6.8 65 377-443 11-76 (236)
245 1ub9_A Hypothetical protein PH 40.7 1E+02 0.0036 26.4 8.3 52 382-434 15-66 (100)
246 3cuo_A Uncharacterized HTH-typ 39.4 89 0.0031 26.8 7.7 52 383-435 24-75 (99)
247 3ax2_A Mitochondrial import re 38.5 71 0.0024 27.8 6.5 47 747-793 13-59 (73)
248 1q1h_A TFE, transcription fact 38.3 16 0.00053 33.0 2.5 60 372-431 7-66 (110)
249 3f8m_A GNTR-family protein tra 38.2 61 0.0021 33.8 7.4 63 376-443 15-78 (248)
250 1deq_A Fibrinogen (alpha chain 38.1 1E+02 0.0035 34.7 9.2 102 146-249 54-158 (390)
251 3mkq_A Coatomer beta'-subunit; 37.8 91 0.0031 36.6 9.7 82 726-822 660-741 (814)
252 1oyi_A Double-stranded RNA-bin 37.5 50 0.0017 29.4 5.5 46 383-430 17-62 (82)
253 3dkw_A DNR protein; CRP-FNR, H 37.0 1.5E+02 0.0053 28.9 9.9 44 397-444 177-220 (227)
254 3jth_A Transcription activator 37.0 2E+02 0.0067 24.9 9.6 58 380-439 20-77 (98)
255 2wv0_A YVOA, HTH-type transcri 36.9 54 0.0018 34.1 6.7 65 377-443 12-77 (243)
256 1b89_A Protein (clathrin heavy 36.4 41 0.0014 38.8 6.1 78 183-286 124-201 (449)
257 2pmr_A Uncharacterized protein 35.6 77 0.0026 28.5 6.5 56 154-209 6-67 (87)
258 2dbb_A Putative HTH-type trans 35.4 45 0.0015 31.6 5.4 48 388-435 13-63 (151)
259 2di3_A Bacterial regulatory pr 35.0 58 0.002 33.4 6.5 67 377-443 6-75 (239)
260 3bwg_A Uncharacterized HTH-typ 35.0 65 0.0022 33.3 7.0 64 378-443 8-72 (239)
261 3bee_A Putative YFRE protein; 34.9 66 0.0023 28.2 6.0 33 180-212 42-74 (93)
262 3eet_A Putative GNTR-family tr 34.9 59 0.002 34.5 6.7 66 377-444 31-97 (272)
263 2cfx_A HTH-type transcriptiona 34.4 54 0.0018 31.0 5.7 48 388-435 9-59 (144)
264 1xmk_A Double-stranded RNA-spe 34.3 57 0.002 28.7 5.4 48 382-430 10-58 (79)
265 2kko_A Possible transcriptiona 34.3 91 0.0031 28.0 7.0 52 382-435 24-75 (108)
266 2cru_A Programmed cell death p 34.2 16 0.00056 34.7 2.0 54 380-433 34-87 (118)
267 2p5v_A Transcriptional regulat 33.9 50 0.0017 31.8 5.5 48 388-435 14-64 (162)
268 4ev0_A Transcription regulator 33.6 1.4E+02 0.0049 28.9 9.0 46 395-444 160-205 (216)
269 1y0u_A Arsenical resistance op 33.6 71 0.0024 27.9 6.0 50 379-431 27-76 (96)
270 3dv8_A Transcriptional regulat 33.0 1.6E+02 0.0055 28.6 9.3 44 397-444 168-211 (220)
271 3lwf_A LIN1550 protein, putati 33.0 94 0.0032 30.5 7.3 77 366-445 15-91 (159)
272 4a0z_A Transcription factor FA 32.9 40 0.0014 34.2 4.8 42 381-422 9-50 (190)
273 4g26_A Pentatricopeptide repea 32.7 1.8E+02 0.006 33.4 10.8 165 184-366 29-204 (501)
274 2cg4_A Regulatory protein ASNC 32.6 53 0.0018 31.2 5.4 47 389-435 13-62 (152)
275 1om2_A Protein (mitochondrial 31.9 51 0.0017 30.2 4.7 40 183-222 22-61 (95)
276 1pc2_A Mitochondria fission pr 31.4 2E+02 0.007 28.1 9.4 64 182-246 33-99 (152)
277 2v79_A DNA replication protein 30.9 62 0.0021 31.0 5.5 57 397-456 50-108 (135)
278 3r0a_A Putative transcriptiona 30.5 2.5E+02 0.0085 25.8 9.5 67 399-465 43-111 (123)
279 2ia0_A Putative HTH-type trans 30.1 98 0.0034 30.4 7.0 47 389-435 22-71 (171)
280 3t8r_A Staphylococcus aureus C 29.3 76 0.0026 30.4 5.9 48 397-444 27-74 (143)
281 3u64_A Protein TP_0956; tetrat 29.1 56 0.0019 35.7 5.3 65 752-818 200-270 (301)
282 1klx_A Cysteine rich protein B 28.7 1.1E+02 0.0039 28.0 6.9 61 751-816 57-125 (138)
283 3i4p_A Transcriptional regulat 28.5 54 0.0018 31.8 4.7 49 387-435 6-57 (162)
284 3e97_A Transcriptional regulat 28.3 1.3E+02 0.0044 29.7 7.6 43 397-443 174-216 (231)
285 2l0k_A Stage III sporulation p 28.2 40 0.0014 30.5 3.4 35 384-419 7-41 (93)
286 2hzt_A Putative HTH-type trans 27.9 2.2E+02 0.0076 25.3 8.5 42 396-437 25-67 (107)
287 3ffl_A Anaphase-promoting comp 27.4 1.7E+02 0.0059 29.3 8.1 63 180-242 62-146 (167)
288 1sfu_A 34L protein; protein/Z- 27.3 1.3E+02 0.0043 26.4 6.2 41 390-430 21-61 (75)
289 1pc2_A Mitochondria fission pr 27.2 3E+02 0.01 26.9 9.8 89 714-816 8-99 (152)
290 1nzn_A CGI-135 protein, fissio 27.1 73 0.0025 30.4 5.2 40 178-217 71-110 (126)
291 1om2_A Protein (mitochondrial 26.6 62 0.0021 29.6 4.3 39 754-792 23-61 (95)
292 1r1u_A CZRA, repressor protein 26.6 1.4E+02 0.0048 26.5 6.8 51 382-434 25-75 (106)
293 3qou_A Protein YBBN; thioredox 26.6 97 0.0033 32.0 6.6 62 752-816 118-179 (287)
294 3mkq_B Coatomer subunit alpha; 26.6 3.4E+02 0.011 27.3 10.2 80 752-860 35-114 (177)
295 2fh0_A Hypothetical 16.0 kDa p 26.5 12 0.0004 33.4 -0.5 50 384-433 6-55 (81)
296 1deq_A Fibrinogen (alpha chain 25.8 2.5E+02 0.0086 31.6 9.8 96 718-815 56-154 (390)
297 3ghg_A Fibrinogen alpha chain; 25.8 61 0.0021 37.8 5.1 100 147-248 52-154 (562)
298 2gau_A Transcriptional regulat 25.8 2.4E+02 0.0082 27.7 9.2 105 327-444 112-222 (232)
299 2pjp_A Selenocysteine-specific 25.6 82 0.0028 29.2 5.2 69 382-461 6-74 (121)
300 1i1g_A Transcriptional regulat 25.4 58 0.002 30.3 4.2 41 389-429 9-49 (141)
301 2oqg_A Possible transcriptiona 24.9 3.5E+02 0.012 23.7 10.5 50 383-434 21-70 (114)
302 3mkq_B Coatomer subunit alpha; 24.8 3E+02 0.01 27.6 9.5 81 183-289 36-116 (177)
303 2nsz_A Programmed cell death p 24.7 4.2E+02 0.014 24.8 10.1 61 749-813 5-68 (129)
304 1ft9_A Carbon monoxide oxidati 24.7 1.9E+02 0.0065 28.4 8.1 32 398-429 163-194 (222)
305 2oz6_A Virulence factor regula 24.6 1.5E+02 0.0052 28.5 7.3 32 398-429 164-195 (207)
306 1tbx_A ORF F-93, hypothetical 24.2 3.4E+02 0.012 23.3 9.2 50 392-441 16-69 (99)
307 2gxg_A 146AA long hypothetical 24.1 3.2E+02 0.011 24.7 9.0 46 391-437 44-89 (146)
308 2fmy_A COOA, carbon monoxide o 24.0 1.6E+02 0.0056 28.7 7.5 43 397-443 166-209 (220)
309 1zu2_A Mitochondrial import re 23.7 1.6E+02 0.0056 28.9 7.2 65 180-247 35-120 (158)
310 2bv6_A MGRA, HTH-type transcri 23.7 2E+02 0.0068 26.1 7.5 46 392-437 45-90 (142)
311 3tgn_A ADC operon repressor AD 23.6 2.2E+02 0.0074 25.9 7.8 49 389-438 43-91 (146)
312 2fbh_A Transcriptional regulat 23.4 2.6E+02 0.0089 25.2 8.3 44 394-437 48-91 (146)
313 2fbi_A Probable transcriptiona 23.4 2.6E+02 0.009 25.1 8.3 44 396-439 48-91 (142)
314 2e1c_A Putative HTH-type trans 23.0 68 0.0023 31.6 4.3 48 388-435 31-81 (171)
315 1z7u_A Hypothetical protein EF 22.9 2.8E+02 0.0097 24.8 8.3 42 397-438 34-76 (112)
316 3k0l_A Repressor protein; heli 22.7 3.6E+02 0.012 25.1 9.4 42 396-437 58-99 (162)
317 3u64_A Protein TP_0956; tetrat 22.5 1.7E+02 0.0059 31.9 7.6 66 183-250 201-272 (301)
318 2y75_A HTH-type transcriptiona 22.1 2.2E+02 0.0076 26.1 7.5 48 397-444 25-72 (129)
319 1s3j_A YUSO protein; structura 22.0 2.7E+02 0.0092 25.6 8.2 44 394-437 47-90 (155)
320 2p5k_A Arginine repressor; DNA 22.0 1.5E+02 0.0052 23.4 5.6 50 384-438 5-59 (64)
321 3pqk_A Biofilm growth-associat 21.8 2.6E+02 0.0087 24.4 7.6 60 380-441 20-79 (102)
322 3bee_A Putative YFRE protein; 21.7 1.2E+02 0.004 26.6 5.2 32 752-783 44-75 (93)
323 2cyy_A Putative HTH-type trans 21.6 75 0.0026 30.2 4.2 47 389-435 12-61 (151)
324 3e4b_A ALGK; tetratricopeptide 21.5 4E+02 0.014 29.4 10.8 89 183-288 178-277 (452)
325 3ryp_A Catabolite gene activat 21.4 2.5E+02 0.0085 27.0 8.1 32 398-429 167-198 (210)
326 4e6h_A MRNA 3'-END-processing 21.3 1.6E+02 0.0055 35.4 7.8 61 755-815 508-568 (679)
327 3bpv_A Transcriptional regulat 21.2 2.3E+02 0.0078 25.5 7.3 46 395-440 40-85 (138)
328 3d0s_A Transcriptional regulat 21.1 3E+02 0.01 26.8 8.8 43 398-444 177-219 (227)
329 1ylf_A RRF2 family protein; st 20.9 2.2E+02 0.0074 27.1 7.3 49 395-444 27-75 (149)
330 1eij_A Hypothetical protein MT 20.9 14 0.00046 32.9 -1.2 47 384-433 8-57 (80)
331 2w25_A Probable transcriptiona 20.8 1.1E+02 0.0037 28.9 5.1 47 389-435 12-61 (150)
332 3o48_A Mitochondria fission 1 20.7 2.3E+02 0.0078 27.4 7.2 40 178-217 75-114 (134)
333 1uly_A Hypothetical protein PH 20.1 5.9E+02 0.02 25.3 10.7 53 377-431 14-66 (192)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-59 Score=535.06 Aligned_cols=372 Identities=19% Similarity=0.287 Sum_probs=310.9
Q ss_pred hchhHHHHHHHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccCCCcccccccccccccccCCCCCCccCCC
Q psy11733 56 IKHNICVKISIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSFYLNSTGALPDVASSG 135 (971)
Q Consensus 56 ~~~~~al~~Ai~~~k~~~nv~~Y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 135 (971)
.++.+|++..++.+|++.....|+.+++.+..... . ...+..++..
T Consensus 41 ~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~----------------~------------------~~~~~~~~~~ 86 (429)
T 4b4t_R 41 EQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNG----------------Q------------------SDLEHDEKSD 86 (429)
T ss_dssp -CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCS----------------C------------------CSSCSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc----------------c------------------hhhhhhhhhh
Confidence 78999999999999999999999999875521100 0 0000000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC
Q psy11733 136 NMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKS-NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG 214 (971)
Q Consensus 136 ~~g~~~~~~~D~~wie~~~~~n~~~le~Le~eLk~yk~-NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~ 214 (971)
. .....++|+.|++.+.++|+.++++|++.++.+++ |.++.++|+++.+||+||+++||+++|+++|.++|++|+++
T Consensus 87 ~--~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~ 164 (429)
T 4b4t_R 87 S--LNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST 164 (429)
T ss_dssp H--HHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC
T ss_pred h--hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh
Confidence 0 00135789999999999999999999999999977 66777799999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCC
Q psy11733 215 KHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCD 294 (971)
Q Consensus 215 ~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~ 294 (971)
+|+++++|++||++++.+||.+|..++.||+..++.+++|+ .++++++|.|++++..|+|++|+++|+++ +++|+
T Consensus 165 ~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~----~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~-~~t~~ 239 (429)
T 4b4t_R 165 GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE----RRNRYKTYYGIHCLAVRNFKEAAKLLVDS-LATFT 239 (429)
T ss_dssp CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH----HHHHHHHHHHHGGGGTSCHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH----HHHHHHHHHHHHHHHhChHHHHHHHHHHH-hccCC
Confidence 99999999999999999999999999999999998888764 48999999999999999999999999998 78899
Q ss_pred cccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHH---HHHHHHHhCCHHHHHHHH-HHHHHhcccc
Q psy11733 295 FPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLR---DILVQFYNSKYATCLNLL-AQIMDNLLLD 370 (971)
Q Consensus 295 ~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr---~lI~aF~~~~Y~~~l~~L-~~~~~~LllD 370 (971)
+.+++++.++++|++||++++++|.+++.+|+++++|+.+++.+|+++ +++.+|++++|..|++.+ ..+...+..|
T Consensus 240 ~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d 319 (429)
T 4b4t_R 240 SIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPC 319 (429)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTC
T ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999988754 568999999999998865 5566789999
Q ss_pred cchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchH
Q psy11733 371 MYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTT 450 (971)
Q Consensus 371 ~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~ 450 (971)
+||++|++.|+++||.+++.||++||++|+|++||++||+|++++|++|++||.+|+|+||||+++|+|++++||+|+++
T Consensus 320 ~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~ 399 (429)
T 4b4t_R 320 KYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQ 399 (429)
T ss_dssp TTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11733 451 FEKSLNVGKEYARKSNML 468 (971)
Q Consensus 451 yq~alk~gd~l~~~a~~l 468 (971)
|++++++||.++++.+.+
T Consensus 400 y~~~i~~gd~Ll~riqkl 417 (429)
T 4b4t_R 400 YHLLVKQGDGLLTKLQKY 417 (429)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887765
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=6.9e-41 Score=379.37 Aligned_cols=283 Identities=17% Similarity=0.230 Sum_probs=230.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcC---CCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRARDYCTN---GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~Rdycts---~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
-+||++|++.|+|++|++.+.+++.+|+. ..+.+++++..++++...+|+.++...+.+|+.+.+... .+|.++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~---~~p~i~ 179 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY---CPPKVQ 179 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---CCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC---CCHHHH
Confidence 37999999999999999999999999987 568899999999999999999999999999998876542 258899
Q ss_pred HHHHHHHHHHHh-hccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchH
Q psy11733 262 TKLKVAAGLAEL-ATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQ 340 (971)
Q Consensus 262 ~kLk~~~GL~~L-~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~ 340 (971)
+++++++|+++| .+|+|++|+++|+++ |.+|+..+.....++++|++||+|++++|.+++. ++.++.+..| ..|+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea-f~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~--~~pe 255 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA-FEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITY--SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTT--CSHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH-HhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH-Hhcccccccc--CCcc
Confidence 999999999999 999999999999998 6655533333346799999999999999999985 5566666666 3566
Q ss_pred ---HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHH
Q psy11733 341 ---LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALEN 417 (971)
Q Consensus 341 ---lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~ 417 (971)
+++++.+|.++++..|+.+|..+++.+..|+||++|++.|+++||.+++.|+++||++|+|+.||+.||+|++++|+
T Consensus 256 i~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~ 335 (394)
T 3txn_A 256 IDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEK 335 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11733 418 ELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAM 474 (971)
Q Consensus 418 eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l~~~a~~lllR~~~ 474 (971)
+|++||.+|+|+|+||+++|+|++.++|+|+++|+++++.+..+.+.+..++-++..
T Consensus 336 ~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~ 392 (394)
T 3txn_A 336 KLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKK 392 (394)
T ss_dssp HHHHHHHTTSSCEEEETTTTEEEECCC------------------------------
T ss_pred HHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998888777653
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=359.02 Aligned_cols=274 Identities=18% Similarity=0.251 Sum_probs=192.0
Q ss_pred HHHHHHH---HhhCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhhHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11733 614 LFRLIYV---ADHCPALRHEALRMAIQYVMQTYNVNLYIQLHRKLSESLSSLKELFLVMFYLELYYFPHPIMENQLNFSF 690 (971)
Q Consensus 614 i~RL~fI---a~~cp~L~~eAL~~Ai~~vk~t~dv~~Y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (971)
+.++.|+ ..++|+.+.+|++..++.+|++.....|+.+++.+... + +.
T Consensus 26 la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~--------------------~-~~-------- 76 (429)
T 4b4t_R 26 VSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVN--------------------N-GQ-------- 76 (429)
T ss_dssp ----------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCC--------------------C-SC--------
T ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc--------------------c-cc--------
Confidence 3455554 56678899999999999999999999998877654100 0 00
Q ss_pred ccccCCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhHHHhhCCHHH
Q psy11733 691 YLNSTGALPDVASSGNMGPQDIPTLDPLLIETKNKKAAMKLEKLDNDLKNYKS-NSIKESIRRGHDDLGDHYLDCGDLSN 769 (971)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~wve~~~~~n~~el~kLe~eLk~~k~-NlikesIR~g~~dlg~~y~~iGDl~~ 769 (971)
...+..++.. ......++|+.|++.+.++|+.++++|+++++++++ |.++.++|+++.+||+||+++||+++
T Consensus 77 -----~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~ 149 (429)
T 4b4t_R 77 -----SDLEHDEKSD--SLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDN 149 (429)
T ss_dssp -----CSSCSHHHHH--HHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTT
T ss_pred -----hhhhhhhhhh--hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 0000000000 001135789999999999999999999999999876 78889999999999999999999999
Q ss_pred HHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc------------------------CCChhh---
Q psy11733 770 ALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA------------------------TPDFAE--- 822 (971)
Q Consensus 770 Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~------------------------~rdf~~--- 822 (971)
|+++|.+++++||+++|++||+|.+||++++++||.+|+.++.||+. .++|++
T Consensus 150 A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 150 AEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 99999999999999999999999999999999999999999999976 234432
Q ss_pred ----------------------------------------hhcchhhhhhhccchhHHH---HHHHhhcCChhHHHHHHH
Q psy11733 823 ----------------------------------------VIFSSGFKLFLELEPQLRD---ILVQFYNSKYATCLNLLA 859 (971)
Q Consensus 823 ----------------------------------------vi~s~~f~~~Le~~P~lr~---li~sfy~~~Y~~~~~~L~ 859 (971)
++++++|+.+++..|+++. ++.+||+|+|..||..+.
T Consensus 230 ~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l 309 (429)
T 4b4t_R 230 LLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLL 309 (429)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2578889999999988665 688999999999998764
Q ss_pred H----------------------H-------------------H---------HHHHHHHhhhhcCccceeeccCCCeEE
Q psy11733 860 Q----------------------I-------------------M---------ALENELMTLILDGQIQARIDSHNKILY 889 (971)
Q Consensus 860 ~----------------------i-------------------m---------aie~EL~~fI~~G~L~arID~vngvl~ 889 (971)
. + | .+|++|++||.+|+|+||||+++|+|+
T Consensus 310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~ 389 (429)
T 4b4t_R 310 ETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVE 389 (429)
T ss_dssp HHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEE
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEE
Confidence 2 0 3 299999999999999999999999999
Q ss_pred ecCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11733 890 AKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAM 923 (971)
Q Consensus 890 t~r~D~R~~~y~~~ik~Gd~l~~~~~~lllR~~~ 923 (971)
+++||+|+++|+++||+||.|+|++|++=.-+.|
T Consensus 390 ~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~l 423 (429)
T 4b4t_R 390 TNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423 (429)
T ss_dssp ECC-------------------------------
T ss_pred ECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999997544444
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-25 Score=246.94 Aligned_cols=300 Identities=15% Similarity=0.182 Sum_probs=223.1
Q ss_pred HhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC---CchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 171 YKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG---KHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 171 yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~---~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
++++......-..+..||..|.+.|+|++|++++.++...|... ...++..+...++....+||..+...+.++...
T Consensus 125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 125 AKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33333333455678899999999999999999999988777543 335678889999999999999999999999876
Q ss_pred CcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccC----CChhHHHHHHHHHhhhcCChHHHHH
Q psy11733 248 PDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPEL----LSPNNIATYGGLCALATFDRSELEK 323 (971)
Q Consensus 248 id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~el----ls~~Dva~Y~~LcaLaS~dR~eLK~ 323 (971)
.....+ ++.+++++..+.|..++..|+|++|..+|.++ +.++...+. ........|+++|.+.+..+.+..
T Consensus 205 ~~~~~~---~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 279 (434)
T 4b4t_Q 205 ANSIYC---PTQTVAELDLMSGILHCEDKDYKTAFSYFFES-FESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVK- 279 (434)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH-HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHH-
T ss_pred hhcCCC---chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHH-
Confidence 443332 35678999999999999999999999999987 443322111 123356789999999887766554
Q ss_pred hccCChhhhhhhc--cchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecH
Q psy11733 324 QVIFSSGFKLFLE--LEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADL 401 (971)
Q Consensus 324 kVlds~efr~~Le--~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L 401 (971)
.++.+.+...+.. ..|.+..++.+|.++.+..+...+..+...+..|.++..|+..+.+.+|.+.+.+++.||++|+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l 359 (434)
T 4b4t_Q 280 NILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEI 359 (434)
T ss_dssp HHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEH
T ss_pred hHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4556666555443 23779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11733 402 NKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAMI 475 (971)
Q Consensus 402 ~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l~~~a~~lllR~~~l 475 (971)
+.||+.||++++++|++|++||.+|+|+|+||+++|+|+..+++.+...|+++++..+.+.+.+..++.|+..|
T Consensus 360 ~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~L~~ka~~l 433 (434)
T 4b4t_Q 360 SHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433 (434)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC---------------------------------
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998888887777654
No 5
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-22 Score=233.75 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=217.1
Q ss_pred HHHHHHHHHhhccchHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC---CchhhHHHHHHHHHHHhhcHHHH
Q psy11733 163 KLDNDLKNYKSNSIKESI--RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG---KHVVDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 163 ~Le~eLk~yk~NliKeSI--R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~---~h~idm~l~lIrv~I~~~dw~~V 237 (971)
.+-..|+..+++-|--++ -+....|++.|.+.|++.+|.+.+..+...|.+. ..++++++..+|+++..+||..+
T Consensus 117 ~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a 196 (445)
T 4b4t_P 117 SVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQA 196 (445)
T ss_dssp HHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344446666666663322 2335689999999999999999999987666443 34589999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChh---HHHHHHHHHhhh
Q psy11733 238 LSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPN---NIATYGGLCALA 314 (971)
Q Consensus 238 ~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~---Dva~Y~~LcaLa 314 (971)
...+.|+........ .+|.++.+++.+.|.++++.|+|.+|+++|+++ |.+++.. -++. .+..|+++|.+.
T Consensus 197 ~~~~~ki~~~~~~~~---~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~-~~~~~~~--~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 197 TVLSRKILKKTFKNP---KYESLKLEYYNLLVKISLHKREYLEVAQYLQEI-YQTDAIK--SDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp HHHHHHHHHHHHHSS---CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccC---CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-Hhccccc--CCHHHHHHHHHHHHHHHHh
Confidence 999999875332222 247789999999999999999999999999998 4443321 2232 356777777777
Q ss_pred cC---ChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccch------HHhHHHHHHHHH
Q psy11733 315 TF---DRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYI------APHVNTLYTQIR 385 (971)
Q Consensus 315 S~---dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL------~~Hv~~L~~~IR 385 (971)
+- .|+.+-.++ .....++..|.++.++.+|.++....|...+..+.+.+..|.++ ..|+..|++.++
T Consensus 271 a~~~~~~~~ll~~~----~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ 346 (445)
T 4b4t_P 271 SPYGNLQNDLIHKI----QNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVI 346 (445)
T ss_dssp SSCSSTTHHHHHSH----HHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHH----hhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHH
Confidence 53 244443332 22233445689999999999999999999999999988888776 789999999999
Q ss_pred HHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHH
Q psy11733 386 NRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEK 453 (971)
Q Consensus 386 ~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~ 453 (971)
...+..+.+||++|+++.||+.||+|++++|++|++||.+|+|+||||+++|+|+..++...+..+.+
T Consensus 347 ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~ 414 (445)
T 4b4t_P 347 EHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNE 414 (445)
T ss_dssp HHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------
T ss_pred HHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877655554443
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.9e-16 Score=175.11 Aligned_cols=256 Identities=13% Similarity=0.097 Sum_probs=193.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhhc---C-----------CCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCC
Q psy11733 189 DHYLDCGDLSNALKCYSRARDYCT---N-----------GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 189 ~~y~~iGDl~~Alk~y~r~Rdyct---s-----------~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
....++.|.++|++.+..+...+. + ....+-+...+.+..+..+|...+..++.+++..++..++|
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 345567899999999987654431 1 12245555667788889999999999999999999887777
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH---HHHHHHHHhhhc---CChHHHHHhccCC
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN---IATYGGLCALAT---FDRSELEKQVIFS 328 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D---va~Y~~LcaLaS---~dR~eLK~kVlds 328 (971)
+ +.+++++..+.|.++...++|..+...++.. +..++..+.+++.+ .+..+++|||.+ +.+.+| +..
T Consensus 164 ~--~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~-l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eL----L~~ 236 (393)
T 4b4t_O 164 P--LRITNSFYSTNSQYFKFKNDFNSFYYTSLLY-LSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGEL----LHH 236 (393)
T ss_dssp S--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHH----HHS
T ss_pred c--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHH----hCC
Confidence 4 4678899999999999999999999999886 44444445666654 466777788765 345554 344
Q ss_pred hhhhhhhcc--chHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhc--cccceecHHhH
Q psy11733 329 SGFKLFLEL--EPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYF--SPYLSADLNKM 404 (971)
Q Consensus 329 ~efr~~Le~--eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl--~PYssV~L~~M 404 (971)
|.+....+. .+.+.+++..|..++|..|...+....+ ..++|..|...+.+.||..++.+.+ +||++|+++.|
T Consensus 237 p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~---~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~i 313 (393)
T 4b4t_O 237 PIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQIS---KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDI 313 (393)
T ss_dssp CCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHH
T ss_pred hHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHH
Confidence 444443222 2458899999999999999988776544 4589999999999999999999976 67899999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHH
Q psy11733 405 SVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKS 454 (971)
Q Consensus 405 A~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~a 454 (971)
|+.+|++++++|.+|+++|.+|.|+||||+++|+|+.....+|.-.-++.
T Consensus 314 a~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~ 363 (393)
T 4b4t_O 314 SKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQI 363 (393)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-------------
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHH
Confidence 99999999999999999999999999999999999998766554444443
No 7
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.52 E-value=7.8e-14 Score=158.30 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=115.0
Q ss_pred HhhhHHHhhCCHHHHHHHHHHhhcccCC---chhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc----------------
Q psy11733 756 DLGDHYLDCGDLSNALKCYSRARDYCTN---GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA---------------- 816 (971)
Q Consensus 756 dlg~~y~~iGDl~~Alkay~r~rdycts---~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~---------------- 816 (971)
.||.+|+..||+++|++.+.+.+++|+. ..+.+++++.-|+++...+|+..++.++.+|+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999999999988 789999999999999999999999999999865
Q ss_pred ----------CCChhhh-------------------------------h--cchhhhhhhc-------cchh---HHHHH
Q psy11733 817 ----------TPDFAEV-------------------------------I--FSSGFKLFLE-------LEPQ---LRDIL 843 (971)
Q Consensus 817 ----------~rdf~~v-------------------------------i--~s~~f~~~Le-------~~P~---lr~li 843 (971)
.+||++| + +-+++..++. ..|+ +++++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~ 263 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVA 263 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHH
Confidence 2344432 0 1112333221 3466 56688
Q ss_pred HHhhcCChhHHHHHHHH---------------------H-------------------H---------HHHHHHHhhhhc
Q psy11733 844 VQFYNSKYATCLNLLAQ---------------------I-------------------M---------ALENELMTLILD 874 (971)
Q Consensus 844 ~sfy~~~Y~~~~~~L~~---------------------i-------------------m---------aie~EL~~fI~~ 874 (971)
.+|++|+|..|+..|+. | | .+|.+|++||.+
T Consensus 264 ~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~d 343 (394)
T 3txn_A 264 EASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILD 343 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 89999999999999863 0 2 399999999999
Q ss_pred CccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11733 875 GQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRS 921 (971)
Q Consensus 875 G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~~~~lllR~ 921 (971)
|+|+|+||.++|+|+.++||+|+++|+++++.+..+-+-+..++=++
T Consensus 344 g~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~ 390 (394)
T 3txn_A 344 KKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKA 390 (394)
T ss_dssp TSSCEEEETTTTEEEECCC----------------------------
T ss_pred CCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777766444
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.24 E-value=7.9e-11 Score=122.46 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCCh--hHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSP--NNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELE 338 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~--~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~e 338 (971)
+.+..-|.|..+|.+++|.+|.+.|.++ |..+ ++-... ..+.+|++.|.|...+-+.. .+ ++++ +..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A-~~~~--~~~~~~~k~~IL~yLIp~~Ll~G~iP~~--~l-----l~~~-~~~ 81 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFA-FEHC--HRSSQKNKRMILIYLLPVKMLLGHMPTV--EL-----LKKY-HLM 81 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS--CTTCHHHHHHHHHHHHHHHHHTTCEECH--HH-----HHHT-TCG
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHH-HHHC--CHhHHHHHHHHHHHHHHHHHHcCCCCCH--HH-----hhhC-chh
Confidence 4567789999999999999999999998 5543 333322 35889999999997642111 01 1122 112
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhcc------ccceecHHhHHHHhC---
Q psy11733 339 PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFS------PYLSADLNKMSVAFN--- 409 (971)
Q Consensus 339 P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~------PYssV~L~~MA~aFg--- 409 (971)
| +.+++.++-.+++..|.+.|++.+ |.|+..++-.+++.+|..++...++ ||++|+++.++.+++
T Consensus 82 ~-y~~L~~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~ 155 (203)
T 3t5x_A 82 Q-FAEVTRAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQ 155 (203)
T ss_dssp G-GHHHHHHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC
Confidence 3 678999999999999999999876 5777788778889999999988887 899999999999995
Q ss_pred ---CChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCC
Q psy11733 410 ---TTIQALENELMTLILDGQIQARIDSHNKILYAKQQD 445 (971)
Q Consensus 410 ---vsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D 445 (971)
++.+++|..|++||.+|.|+|+||..+|+++..+.|
T Consensus 156 ~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 156 VEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp CTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 489999999999999999999999999998886654
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.17 E-value=1.7e-11 Score=110.50 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCc
Q psy11733 375 PHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQR 447 (971)
Q Consensus 375 ~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R 447 (971)
.|...|.+.+....+..|.+||++|+|+.||+.||+|++++|++|++||.+|+|+|+||+++|+|+..++++.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 3556677788888888899999999999999999999999999999999999999999999999999887654
No 10
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1e-09 Score=127.70 Aligned_cols=212 Identities=14% Similarity=0.105 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC
Q psy11733 220 MCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELL 299 (971)
Q Consensus 220 m~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell 299 (971)
+.-.++|..+..+.+..+...++|+. .++... .+ ..+.+..-|.|..++.+++|.+|.++|..+ +..+......
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~---sn-~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A-~rkap~~~~a 306 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE-YPHTDV---SS-SLEARYFFYLSKINAIQLDYSTANEYIIAA-IRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTS---CH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TSSCSCSSSC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc-CCcccC---CH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCcchhh
Confidence 34456899999999999999999996 443311 12 235788899999999999999999999987 4433222222
Q ss_pred C--hhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhH
Q psy11733 300 S--PNNIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHV 377 (971)
Q Consensus 300 s--~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv 377 (971)
. ...+.+|.++|.|...+=++ ..++..+.++..+ .| +.+++.+|-.++...|...|+.++..+..|-- ...+
T Consensus 307 ~gfr~~a~K~lI~V~LLlG~iP~--r~lf~q~~l~~~L--~p-Y~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgt-y~LI 380 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLMGDIPE--LSFFHQSNMQKSL--LP-YYHLTKAVKLGDLKKFTSTITKYKQLLLKDDT-YQLC 380 (523)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCC--HHHHTTTSCHHHH--HH-HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC-THHH
T ss_pred hhHHHHHHHHHHhHHhhcCCCCC--hHHhhchhHHHHH--HH-HHHHHHHHHcCCHHHHHHHHHHhcceeccCCh-hHHH
Confidence 2 23567899999988654221 1233334443322 23 55799999999999999999999999888833 2467
Q ss_pred HHHHHHHHHHHHHHhccccceecHHhHHHHhCCC-hHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 378 NTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT-IQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 378 ~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvs-vd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
..+...+....+.....+|++|+|..+|..++++ ++++|.-+++||.+|.|+|+||+.+|+|+..+
T Consensus 381 ~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske 447 (523)
T 4b4t_S 381 VRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTE 447 (523)
T ss_dssp HHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCc
Confidence 7777788888889999999999999999999984 77899999999999999999999999999865
No 11
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.84 E-value=5.4e-08 Score=112.41 Aligned_cols=242 Identities=12% Similarity=0.024 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhhhcCCC----------chh---hHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC-hhHHH
Q psy11733 196 DLSNALKCYSRARDYCTNGK----------HVV---DMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN-NQAVF 261 (971)
Q Consensus 196 Dl~~Alk~y~r~Rdycts~~----------h~i---dm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r-~~~l~ 261 (971)
-++.|...+.++...|.+.. .+. -+.-+++++.+-.++.....+-+...+.... .+..+. +..-+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~-~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSM-LAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCC-CSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCC-CcChhhCCccce
Confidence 46777777888877775421 122 2333567788778887777666554443211 011111 12235
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhcccCC-CCccc-----CCChhHHHHHHHHHhhhcCChHHHHHhccCChhhhhhh
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQAHFDY-CDFPE-----LLSPNNIATYGGLCALATFDRSELEKQVIFSSGFKLFL 335 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~-~~~~e-----lls~~Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~L 335 (971)
.+..-|.|..++.+++|.+|.+.|.++ |.. +.... .-....+.+|.+.|.|...+-.+. .++..+.. -
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A-~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~--~ll~k~~~---~ 293 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEA-FQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKW--GPLRPFLS---Q 293 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH--HHHGGGSC---H
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHH-HHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCH--HHHcccch---H
Confidence 677889999999999999999999998 554 22110 111235889999999998542221 11111100 1
Q ss_pred ccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccc---hHHhHH-HHHHHHHHHHHHHhcccc--ceecHHhHHHHhC
Q psy11733 336 ELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMY---IAPHVN-TLYTQIRNRALIQYFSPY--LSADLNKMSVAFN 409 (971)
Q Consensus 336 e~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~y---L~~Hv~-~L~~~IR~kaliQYl~PY--ssV~L~~MA~aFg 409 (971)
+..|.+.+++.+.-.+++..|.+.|++++..+..|-. |-..++ -.++.+..+++..|+.|| ++|+++.++.+++
T Consensus 294 ~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~ 373 (455)
T 3t5v_B 294 ETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQ 373 (455)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHh
Confidence 2234466799999999999999999998875544422 112222 224555556666788899 8999999999997
Q ss_pred ---------------------CChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 410 ---------------------TTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 410 ---------------------vsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
++.+++|-.|++||.+|.|+|.||..+++++..+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 374 LSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred hccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 57889999999999999999999999999888765
No 12
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.3e-08 Score=107.91 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=107.8
Q ss_pred HHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCC---chhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC---------
Q psy11733 750 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN---GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT--------- 817 (971)
Q Consensus 750 IR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts---~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~--------- 817 (971)
.-..+..+|..|...|++++|++.+.++...|.. ....++..+..+|+.+..+||.....+..+|..+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 4567788999999999999999999998766644 3457889999999999999999999988887541
Q ss_pred ----------------CChhhh-------h---------------------------------------cchhhhhh--h
Q psy11733 818 ----------------PDFAEV-------I---------------------------------------FSSGFKLF--L 833 (971)
Q Consensus 818 ----------------rdf~~v-------i---------------------------------------~s~~f~~~--L 833 (971)
.+|.++ + .+...... .
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQS 293 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcc
Confidence 122211 0 00001111 1
Q ss_pred ccchhHHHHHHHhhcCChhHHHHHHHHH----------------------------------------H---------HH
Q psy11733 834 ELEPQLRDILVQFYNSKYATCLNLLAQI----------------------------------------M---------AL 864 (971)
Q Consensus 834 e~~P~lr~li~sfy~~~Y~~~~~~L~~i----------------------------------------m---------ai 864 (971)
+..|.+..++..|+++.+..|...+... | .+
T Consensus 294 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~ 373 (434)
T 4b4t_Q 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQV 373 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHH
T ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHH
Confidence 2237788899999999999988887520 1 28
Q ss_pred HHHHHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11733 865 ENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKSNMLILRSAM 923 (971)
Q Consensus 865 e~EL~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~~~~lllR~~~ 923 (971)
|+.|+++|.+|+|+|+||.++|+|+..+++.+...|+.+++..+.+.+-+..+.-|+.+
T Consensus 374 E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~L~~ka~~ 432 (434)
T 4b4t_Q 374 EGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASV 432 (434)
T ss_dssp HHHHHHHHHHTSSCCEEETTTTEEECC--------------------------------
T ss_pred HHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777776666554
No 13
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.2e-07 Score=103.90 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhhhhHH--HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccC---CchhHHHHHHHHHHHHHhccCHHHH
Q psy11733 733 KLDNDLKNYKSNSIKE--SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT---NGKHVVDMCLNVIRVSVYLQNWSHV 807 (971)
Q Consensus 733 kLe~eLk~~k~Nlike--sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdyct---s~gh~IDm~l~lIRV~if~~D~~~V 807 (971)
++-.-|....++-+-. +--+-...|+..|.+.||+.+|.+......--|. ....++++.+-.+|+++..+||..+
T Consensus 117 ~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a 196 (445)
T 4b4t_P 117 SVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQA 196 (445)
T ss_dssp HHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3444455555555432 2234456899999999999999999998754443 3467899999999999999999999
Q ss_pred HHHHHHHhc----C---------------------CChhhh-------hc---------------------------chh
Q psy11733 808 LSYVNKAEA----T---------------------PDFAEV-------IF---------------------------SSG 828 (971)
Q Consensus 808 ~~~i~KA~~----~---------------------rdf~~v-------i~---------------------------s~~ 828 (971)
...+.||.. . ++|.+| .+ .+.
T Consensus 197 ~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~ 276 (445)
T 4b4t_P 197 TVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL 276 (445)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST
T ss_pred HHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch
Confidence 999999853 1 233322 10 011
Q ss_pred hh---------hhhccchhHHHHHHHhhcCChhHHHHHHHH---------------------------H-----------
Q psy11733 829 FK---------LFLELEPQLRDILVQFYNSKYATCLNLLAQ---------------------------I----------- 861 (971)
Q Consensus 829 f~---------~~Le~~P~lr~li~sfy~~~Y~~~~~~L~~---------------------------i----------- 861 (971)
+. ..++..|.++.++..|.+.....|-..++. +
T Consensus 277 ~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~ 356 (445)
T 4b4t_P 277 QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEY 356 (445)
T ss_dssp THHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112345888889999988766555444331 0
Q ss_pred -----------------HHHHHHHHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHHHHHH
Q psy11733 862 -----------------MALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEYARKS 914 (971)
Q Consensus 862 -----------------maie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l~~~~ 914 (971)
..+|..|++||.+|+|+|+||.++|+|+-.+|...+..++.-....+.+++.+
T Consensus 357 Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v 426 (445)
T 4b4t_P 357 YSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHI 426 (445)
T ss_dssp EEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------------------
T ss_pred hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 13999999999999999999999999999888777776666555555555443
No 14
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.78 E-value=0.00011 Score=74.48 Aligned_cols=99 Identities=11% Similarity=0.201 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCC-hHHHHH
Q psy11733 339 PQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT-IQALEN 417 (971)
Q Consensus 339 P~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvs-vd~lE~ 417 (971)
+.+.+++..|..++|..+...- +.+ +-|. +...+.||..++...+.-.+.++.+.++++++++ ++++|.
T Consensus 60 ~~~~~LL~iF~~G~~~~y~~~~----~~~---p~L~---~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~ 129 (169)
T 3chm_A 60 SVYLDLLRLFAHGTWGDYKCNA----TRL---PHLS---PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELED 129 (169)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHG----GGS---CCCC---HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHhH----HhC---cchH---HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHH
Confidence 4588999999999999987632 121 2233 7888999999999999889999999999999999 999999
Q ss_pred HHH-HHHHcCceeEEEcCCCCEEEEccCCCc
Q psy11733 418 ELM-TLILDGQIQARIDSHNKILYAKQQDQR 447 (971)
Q Consensus 418 eLv-~LI~dgrL~ARIDsvngiL~~~~~D~R 447 (971)
+++ +.|..|-|.||||+++++++.....+|
T Consensus 130 lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 130 FLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 999 999999999999999999998876555
No 15
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00047 Score=78.14 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=46.8
Q ss_pred chhHHHHHHHhhcCChhHHHHHHHH------------------H------------------------------HHHHHH
Q psy11733 836 EPQLRDILVQFYNSKYATCLNLLAQ------------------I------------------------------MALENE 867 (971)
Q Consensus 836 ~P~lr~li~sfy~~~Y~~~~~~L~~------------------i------------------------------maie~E 867 (971)
.+++.+++..|..++|..|...+.. + ..+|.-
T Consensus 248 ~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~l 327 (393)
T 4b4t_O 248 YDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHL 327 (393)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHH
Confidence 3568999999999999999765421 0 139999
Q ss_pred HHhhhhcCccceeeccCCCeEEecCCCchhHHHHHHHHHHHHH
Q psy11733 868 LMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEY 910 (971)
Q Consensus 868 L~~fI~~G~L~arID~vngvl~t~r~D~R~~~y~~~ik~Gd~l 910 (971)
++++|..|.|+||||.++|+|+-....+|.-.-++.-...+.|
T Consensus 328 li~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L 370 (393)
T 4b4t_O 328 VMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRL 370 (393)
T ss_dssp HHHHHHHSCSSSCEETTTTEECC--------------------
T ss_pred HHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988877765555544444333
No 16
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.18 E-value=0.039 Score=58.29 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHh-hcHHHHHHHHHHHhccCcccCC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYL-QNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~-~dw~~V~~~v~KAk~~id~~~d 253 (971)
...-.++..+|..|.+.|++++|+.+|.++.+.....+.. ...+.++-.+.... |++..+..++.+|-.+....++
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999988776554443 23444444455554 9999999999998775432221
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC--ChhHHHHHHHHHhhhcCChHHHHHhccCChhh
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELL--SPNNIATYGGLCALATFDRSELEKQVIFSSGF 331 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell--s~~Dva~Y~~LcaLaS~dR~eLK~kVlds~ef 331 (971)
+...+....--|..++..|+|.+|...|-.+. ......... +..+...-.++|-+...+-.+-. ..+
T Consensus 154 ----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~ 222 (292)
T 1qqe_A 154 ----VALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA------RTL 222 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH------HHH
T ss_pred ----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH------HHH
Confidence 11123333445778889999999999998763 211111111 11122233455555444322211 123
Q ss_pred hhhhccchH---------HHHHHHHHHhCCHHHHHHHHHHHHHhcccccch
Q psy11733 332 KLFLELEPQ---------LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYI 373 (971)
Q Consensus 332 r~~Le~eP~---------lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL 373 (971)
...++..|. +..++..+...+...+.+.+..+...+.+|+..
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 344444443 455667776677777788888877777777754
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.91 E-value=0.008 Score=56.03 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
|.++.-.++..+|..|++.|+|++|+++|.++.+..+. ..+...++-.+...+|+|..+...+.++-.+- ++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~-- 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SK-- 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hh--
Confidence 55667778889999999999999999999998876542 34666777778888999999999999987642 11
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. ......-|..++..|+|.+|...|-.+
T Consensus 80 ~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 80 F-----IKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp C-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 234566788899999999999999876
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.91 E-value=0.0089 Score=55.57 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccC-cccCCCCCh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP-DFAEGKDNN 257 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~i-d~~~d~~r~ 257 (971)
+.-.++..+|..|++.|+|++|+++|.++.+..+. ......++-.+.+.+|+|..+..+..++-.+- +...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---- 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD---- 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh----
Confidence 44567889999999999999999999999887643 24566677777888999999999999987652 22221
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....++...--|..+...|+|..|.+.|-.+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2234556666788899999999999998765
No 19
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.88 E-value=0.019 Score=52.17 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V 237 (971)
++.++.-++-+++..-...+..++..+|..|...|++++|.++|.++.+.+...+. ...+..++-.+....++|..+
T Consensus 29 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 108 (164)
T 3ro3_A 29 VIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444444444556678999999999999999999999998777644333 234555666677788999999
Q ss_pred HHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 238 LSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 238 ~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..++.++-......++ +.........-|..++..|+|..|...|-.+
T Consensus 109 ~~~~~~a~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 109 IDYHLKHLAIAQELKD----RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc----hHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998776543322 2234555566777888999999999988765
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.84 E-value=0.019 Score=55.51 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC----chhhHHHHHHHHHHHh
Q psy11733 156 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK----HVVDMCLNVIRVSVYL 231 (971)
Q Consensus 156 ~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~----h~idm~l~lIrv~I~~ 231 (971)
+...-++.++.-++-++........-.++..+|..|...|++++|.++|.+..+.+...+ .......++-.+....
T Consensus 41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 120 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 334445556666666666666677888999999999999999999999999888764433 2344556666777788
Q ss_pred hcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 232 QNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 232 ~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
|+|..+..++.++-......++ +.........-|..++..|+|.+|...|-.+
T Consensus 121 g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVYAQQADD----QVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999998766433332 2334455566777888999999999998876
No 21
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=96.66 E-value=0.12 Score=54.33 Aligned_cols=74 Identities=7% Similarity=0.026 Sum_probs=60.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCC-hHHHHHHHHH
Q psy11733 343 DILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTT-IQALENELMT 421 (971)
Q Consensus 343 ~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvs-vd~lE~eLv~ 421 (971)
++-.++.+++|..|++.+.... .+.....++.|+..+|..++.-..+.|.+|+++.+++.+|.+ +++++..+..
T Consensus 140 ~l~~al~~GnY~kff~l~~~~p-----~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 140 SLEQNVMEGAFDKVASMIRSCN-----FPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-----CGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4556788999999999887632 223455678999999999999999999999999999999995 6666666665
No 22
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.65 E-value=0.002 Score=57.98 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhcCccceeeccCCCeEEecCCCchh
Q psy11733 862 MALENELMTLILDGQIQARIDSHNKILYAKQQDQRS 897 (971)
Q Consensus 862 maie~EL~~fI~~G~L~arID~vngvl~t~r~D~R~ 897 (971)
..+|+.|++||.+|+|+|+||.++|+|+..+|++.+
T Consensus 45 ~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~~ 80 (84)
T 1ufm_A 45 AKAEKIASQMITEGRMNGFIDQIDGIVHFETREASG 80 (84)
T ss_dssp HHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCCC
T ss_pred HHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccCC
Confidence 359999999999999999999999999999988753
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.55 E-value=0.5 Score=50.09 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
...-.++..+|..|.. |++++|+++|.++.+.....+. ..+.+.++-.+....|+|..+..++.++-........
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~- 190 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN- 190 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-
Confidence 3456788999999999 9999999999998887755443 2456667777888899999999999998765332221
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..........|+.++..|+|..|...|-.+
T Consensus 191 ---~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 191 ---YPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123445566788888999999999999877
No 24
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.51 E-value=0.34 Score=49.43 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHHH
Q psy11733 162 EKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHVL 238 (971)
Q Consensus 162 e~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V~ 238 (971)
+.++.-++-.+...-....-..+..+|..|...|++++|.++|.++.+.+...+. ....+..+..+....|++..+.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344444444444444566778999999999999999999999998777644332 2335667777788889999999
Q ss_pred HHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 239 SYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 239 ~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.++.++.......++ +.........-|..++..|+|..|...|-.+
T Consensus 244 ~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 244 EYYKKTLLLARQLKD----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999998765433221 2234555566777888999999999998765
No 25
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.47 E-value=0.29 Score=49.87 Aligned_cols=121 Identities=19% Similarity=0.169 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHH
Q psy11733 164 LDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSY 240 (971)
Q Consensus 164 Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~ 240 (971)
++.-++-++.+.....+..++..+|..|...|++++|.++|.++.+.+...+.. ......+-.+....|+|..+..+
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444444444455667789999999999999999999999987776543322 34555667777888999999999
Q ss_pred HHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 241 VNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 241 v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+.++.......++ +.........-|..+...|+|..|...|-.+
T Consensus 286 ~~~a~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 286 HLKHLAIAQELKD----RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9998776443322 2223445556677888999999999998775
No 26
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.37 E-value=0.028 Score=51.11 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
....++..+|..|...|++++|.++|.++.+.+...+.. ......+-.+....|++..+..++.++.......++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 456678999999999999999999999988776543322 235556666777889999999999998776543332
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+.........-|..++..|+|.+|...|-.+
T Consensus 85 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 85 --RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2334555667788889999999999998876
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.37 E-value=0.41 Score=50.84 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V 237 (971)
++.++.-++-.+...-....-.++..+|..|...|++++|.++|.++.+.+...+. ....+.++-.+....|++..+
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 34444444444444445667778999999999999999999999998877654332 233566667777888999999
Q ss_pred HHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 238 LSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 238 ~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..++.++-......++ +.........-|..+...|+|..|...|-.+
T Consensus 247 ~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKD----RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcC----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 9999998765433221 2223455566677888999999999998775
No 28
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.33 E-value=0.26 Score=50.26 Aligned_cols=101 Identities=8% Similarity=0.061 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-..++.+|..+++.|++++|++.|.++....+......+..+.+-.+....|+|..+...+.++-..-.... .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~---- 87 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---R---- 87 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---T----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---h----
Confidence 457889999999999999999999999887766655678888888899999999999999999876521111 1
Q ss_pred HHHHHHHHHHHHhh--------ccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELA--------TRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~--------~r~yk~AA~~FLea 288 (971)
........|..++. .|+|..|...|-.+
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 12334556777777 99999999998775
No 29
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.28 E-value=0.43 Score=50.71 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHH
Q psy11733 162 EKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVL 238 (971)
Q Consensus 162 e~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~ 238 (971)
+.++.-++-++.+.....+-.++..+|..|...|++++|.++|.++.+.....+.. ...+..+-.+....|+|..+.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 33444444444444455667789999999999999999999999987766443322 345566677778889999999
Q ss_pred HHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 239 SYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 239 ~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.++.++.......++ +.........-|..+...|+|..|...|-.+
T Consensus 288 ~~~~~a~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 288 DYHLKHLAIAQELND----RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998776443332 2223455566777888999999999998876
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.15 E-value=0.052 Score=48.64 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+++.+|..+++.|++++|.+.|.++.....+.....+..+.+-.+....|+|..+...+.++-....... . ..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~----~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---K----AA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---T----HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---c----cH
Confidence 4678999999999999999999998876655444446777788888889999999999998865421110 0 12
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..++..|+|..|...|-.+
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455678888999999999998765
No 31
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.14 E-value=0.027 Score=53.56 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC---------------CCchhhHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN---------------GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 244 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts---------------~~h~idm~l~lIrv~I~~~dw~~V~~~v~KA 244 (971)
.-..+..+|..+++.|+|++|+++|.++...+.. ......++.++-.+.+..|+|..+..+..++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456889999999999999999999998777422 1233467777888888899999999999998
Q ss_pred hccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 245 EATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 245 k~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-.+- ++ ..+.....|.+++..|+|..|...|-.+
T Consensus 90 l~~~---p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 90 LKRE---ET-------NEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHS---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcC---Cc-------chHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 7652 11 1234456788899999999999998876
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.08 E-value=0.072 Score=46.90 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..++..|+++.|.++|.++...... ....+..+..+....++|..+..++.++-....... .....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR---EDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---TCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc---hhHHH
Confidence 456889999999999999999999998776532 246667777778889999999999998876532111 11122
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......-|..++..|+|..|...|-.+
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2455566788889999999999998776
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.03 E-value=0.36 Score=46.08 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..|.+.||+++|+++|.++.+..+ + ..+....+-.+....|+|..+...+.++....... .
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----------~ 73 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADP--N-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----------A 73 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----------H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh----------H
Confidence 588999999999999999999999887653 2 35677788888888999999999999886543211 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......|......++|..|...|-.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455677888899999999998876
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.96 E-value=0.43 Score=51.36 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=86.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHHHHHH
Q psy11733 165 DNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHVLSYV 241 (971)
Q Consensus 165 e~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V~~~v 241 (971)
+.-++-.+...-...+-.++..+|..|...|++++|.++|.++.+.+...+. ......++..+....|+|..+..++
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3333333333334556778999999999999999999999998777643222 2235667777788889999999999
Q ss_pred HHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 242 NKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 242 ~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.++.......++ +.........-|..++..|+|..|...|-.+
T Consensus 287 ~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 287 KRTLALAVELGE----REVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998776443221 2223555566777888999999999998775
No 35
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.068 Score=48.27 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..++..|++++|+++|.++...... ..+...++-.+....|+|..+...+.++-..- ++ .
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~--~----- 71 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PN--F----- 71 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--C-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC--c-----
Confidence 46788999999999999999999998877543 24667777778888999999999999987652 11 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 234456788899999999999998765
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.041 Score=50.05 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..++..|++++|.++|.++.............+.++-.+....++|..+...+.++-.... + .
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---~---- 98 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---G---D---- 98 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---C---C----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---c---C----
Confidence 45778999999999999999999998877654322356677777778888999999999998865421 1 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..++..|+|..|...|-.+
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233456677888999999999998876
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.90 E-value=0.48 Score=48.24 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh-----cCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC-----TNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc-----ts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~ 252 (971)
.....++..+|..|...|++++|.++|.++.+.+ ............+-.+....|+|..+..++.++........
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999988776 22334456667777788888999999999999877643221
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+... + ........-|..++..|+|..|...|-.+
T Consensus 188 ~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 188 GPDD-P-NVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp CTTC-H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCC-H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 1 12344556677888999999999999775
No 38
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.85 E-value=0.13 Score=54.55 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
......++..+|..|...|++++|+++|.++.+.....+.. ...+.++-.+... +++..+..++.+|-.+....++
T Consensus 72 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 44567789999999999999999999999987765544433 2333344444444 9999999999998776543221
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+........--|..+...|+|..|...|-.+
T Consensus 151 ----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 151 ----LRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222334444577788999999999999876
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.82 E-value=0.059 Score=51.33 Aligned_cols=98 Identities=6% Similarity=-0.052 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
++--.+++.+|..|++.|++++|.++|.++.+..+. ..+....+-.+....|+|..+...+.++-.+-. + .
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~---~ 98 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYELEENTDKAVECYRRSVELNP---T---Q 98 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---C---C
Confidence 344556889999999999999999999998776532 346667777778888999999999999876421 1 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+ .....-|..++..++|.+|+..|++-
T Consensus 99 ~----~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 99 K----DLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp H----HHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred H----HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 22344566678899999999999863
No 40
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.77 E-value=0.079 Score=53.07 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh-----cCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC-----TNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc-----ts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~ 252 (971)
+..-.++..+|..|...|++++|.++|.++.+.+ .........+.++-.+....|+|..+..++.++-.......
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4567789999999999999999999999987775 23344566777777888889999999999999977643321
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+.+. |. .......-|..+...|+|..|...|-.+
T Consensus 120 ~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 120 GKFH-PD-VAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp CTTC-HH-HHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC-hH-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 11 2344455677788999999999998876
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.63 Score=45.95 Aligned_cols=101 Identities=13% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCccc-CCCCChh
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFA-EGKDNNQ 258 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~-~d~~r~~ 258 (971)
--.++..+|..++..|++++|+++|.++.+.. ...+..+.+..+....|+|..+...+.++-...... ++ .
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD----Y 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----H
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc----h
Confidence 34678899999999999999999999988776 235677788888889999999999999987643211 11 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.........-|..+...|+|.+|...|-.+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 112455667778888999999999999876
No 42
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.73 E-value=0.019 Score=50.09 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=53.6
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..++.|++..+.|.|+.+|..||++.+.+-+.|..|..+|+|.+-||-.-+.|+..+.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 4568899999999999999999999999999999999999999999999998887654
No 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.72 E-value=0.14 Score=49.66 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
+.++--.+++.+|..+++.|++++|.++|.++....+. ..+...++-.+....|+|..+...+.++-.+-.. +
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~-- 103 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--D-- 103 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--C--
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--C--
Confidence 35667788999999999999999999999998776542 2456666667777889999999999999765311 1
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 104 ------~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 104 ------YTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp ------CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123456688899999999999998776
No 44
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.70 E-value=0.1 Score=47.24 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-..+..+|..++..|++++|+++|.++...... ..+...++-.+....++|..+...+.++-..-. + .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~--~---- 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDG---Q--S---- 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--C----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---h--h----
Confidence 356889999999999999999999998877543 346777777788889999999999998876421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 77 -~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 77 -VKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 234566788889999999999998875
No 45
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.69 E-value=0.13 Score=55.62 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc----hhhHHHHHHHHHHHhhcHHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH----VVDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h----~idm~l~lIrv~I~~~dw~~ 236 (971)
++.++.-++-++...-....-.++..+|..|+..|+++.|+++|.++.+.+...+. ...+..++-.+....|+|..
T Consensus 123 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 202 (383)
T 3ulq_A 123 IKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYED 202 (383)
T ss_dssp HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 33344444444433334456788999999999999999999999998887755443 23445555566677899999
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..++.+|-......++ +...+.....-|..+...|+|..|...|-.+
T Consensus 203 A~~~~~~al~~~~~~~~----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 203 AISHFQKAYSMAEAEKQ----PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999876543332 2234555566788889999999999999886
No 46
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.68 E-value=0.13 Score=44.36 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..+...|++++|.++|.++...... ..+..+.+..+....++|..+...+.++-.... + .
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~--~----- 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---D--W----- 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T--C-----
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---c--c-----
Confidence 46888999999999999999999998776542 246677777788889999999999998865421 1 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 234456677788999999999998876
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.67 E-value=0.63 Score=50.05 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhcHHHHHHH
Q psy11733 164 LDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQNWSHVLSY 240 (971)
Q Consensus 164 Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~dw~~V~~~ 240 (971)
++.-++-...+........++..+|..|...|++++|.++|.++.+.+...+. ....+..+-.+....|+|..+..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444445566778999999999999999999999998777653332 235566777777888999999999
Q ss_pred HHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 241 VNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 241 v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+.++.......++ +.........-|..+...|+|.+|...|-.+
T Consensus 326 ~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 326 HNRHLAIAQELGD----RIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9998776443321 2223445556677888999999999998876
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.65 E-value=0.91 Score=45.64 Aligned_cols=160 Identities=8% Similarity=0.001 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..++..|++++|++.|.++.+..+. ..+....+..+....|+|..+...+.++-...+ + +....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~----~~~~~ 74 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN---A----TKAKS 74 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC---T----TTCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC---c----hhHHH
Confidence 4678899999999999999999998776543 234566667788889999999999999877331 1 12234
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhH--HHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchH
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNN--IATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQ 340 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~D--va~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~ 340 (971)
.....-|..++..|+|..|...|-.+. . +.|.+ +....+.+-....+-.+-. ..+...++..|.
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~-~-------~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~al~~~~~ 140 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAV-D-------RDTTRLDMYGQIGSYFYNKGNFPLAI------QYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-H-------HSTTCTHHHHHHHHHHHHTTCHHHHH------HHHGGGCCSSCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-h-------cCcccHHHHHHHHHHHHHccCHHHHH------HHHHHHhhcCCC
Confidence 455677888899999999999998763 2 11111 2222222222222211110 123333433332
Q ss_pred ----HHHHH-HHHHhCCHHHHHHHHHHHHHh
Q psy11733 341 ----LRDIL-VQFYNSKYATCLNLLAQIMDN 366 (971)
Q Consensus 341 ----lr~lI-~aF~~~~Y~~~l~~L~~~~~~ 366 (971)
+..+. ..|...+|..+.+.+......
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455 778888999888888776544
No 49
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.65 E-value=0.088 Score=50.03 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
.-..+..+|..|+..|++++|+++|.++...... ..+.+.++-.+.+..++|..+...+.++-..-. + .
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~--~--- 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---K--Y--- 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--C---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C--C---
Confidence 3456889999999999999999999998887643 356777778888889999999999999876521 1 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 79 --~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 79 --SKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 234456788889999999999999876
No 50
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.64 E-value=0.44 Score=51.55 Aligned_cols=124 Identities=11% Similarity=0.140 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHH
Q psy11733 161 LEKLDNDLKNYKSNSI-KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 161 le~Le~eLk~yk~Nli-KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~ 236 (971)
++.++.-++-++++.. ...+-.++..+|..|...|++++|.++|.++.+.+...+.. .....++-.+....|++..
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344555555555544 56677889999999999999999999999988877544322 2345556666678899999
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..++.+|-.+.....+. |. .......-|..++..|+|..|...|-.+
T Consensus 243 A~~~~~~al~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNIL---PS-LPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHHHHTTCG---GG-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc---hh-HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999998764433221 11 2444556677888999999999999876
No 51
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.58 E-value=0.13 Score=55.90 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=86.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc----hhhHHHHHHHHHHHhhcHHHHHH
Q psy11733 164 LDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH----VVDMCLNVIRVSVYLQNWSHVLS 239 (971)
Q Consensus 164 Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h----~idm~l~lIrv~I~~~dw~~V~~ 239 (971)
++.-++-.+...-....-.++..+|..|+..|++..|++++.++.+.....+. ...+..++-.+....|+|..+..
T Consensus 124 ~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 203 (378)
T 3q15_A 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALP 203 (378)
T ss_dssp HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33334333333334567778999999999999999999999998877654332 34455555666677899999999
Q ss_pred HHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 240 YVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 240 ~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++.+|-......++ +...+....--|..+...|+|..|...|-.+
T Consensus 204 ~~~~al~~~~~~~~----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 204 HLEAALELAMDIQN----DRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998776543332 2234455556677888999999999999876
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.57 E-value=1.6 Score=45.81 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC
Q psy11733 178 ESIRRGHDDLGDHYLDC-GDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~i-GDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d 253 (971)
...-.++..+|..|... |++++|+++|.++.+.....++. .++..++-.+.+..|++..+..++.++-........
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 34566789999999996 99999999999988776544332 345667777888889999999999998765432211
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. .. .........|+.++..|+|..|...|-.+
T Consensus 194 ~--~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 194 S--QW-SLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp T--GG-GHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred c--cH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 00 01223445688899999999999998876
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.57 E-value=0.14 Score=47.34 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
.-..+..+|..++..|++++|.++|.++...... ..+...++..+....++|..+...+.++-..-.. .
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~-- 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------Y-- 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------c--
Confidence 4456889999999999999999999998776543 2566777777888899999999999998765211 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..+...|+|..|...|-.+
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 233456677888999999999999876
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.56 E-value=0.076 Score=47.13 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
.-.++..+|..++..|++++|.++|.++...... ..+....+..+....++|..+...+.++-.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------- 82 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--------- 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------
Confidence 3456888999999999999999999998765432 2566667777777889999999999988764211
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
........|..++..|+|..|...|-.+
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1234456677888999999999998876
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.52 E-value=0.19 Score=44.03 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
..-..+..+|..++..|+++.|.++|.++...... .......+..+....++|..+...+.++-.... + .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---~- 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---A---Y- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C-
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---c---C-
Confidence 34567889999999999999999999998776532 256677777788889999999999998876421 1 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 ---SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234456677888999999999998876
No 56
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.50 E-value=0.09 Score=55.18 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC-C--c-hhhHHHHHHHHHHHhhcHHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG-K--H-VVDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~-~--h-~idm~l~lIrv~I~~~dw~~ 236 (971)
++.++.-|+-+..+.-....-.++..+|..|...|++++|+++|.++.+.+... + . .+....++-.+....|+|..
T Consensus 135 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 135 ILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 334444444333333333356689999999999999999999999988654221 1 1 22577777888888999999
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHH-HHHhhc
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAA-RFFLQA 288 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA-~~FLea 288 (971)
+..++.++-......++. ...+.+...-|..+...|+|+.|. .+|-.+
T Consensus 215 Al~~~~kal~~~~~~~~~----~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTBC----SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999997764332221 124556667788889999999994 444443
No 57
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.46 E-value=0.072 Score=51.30 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCC
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~ 255 (971)
..-.++..+|..|...|++++|.++|.++.+.+...+.. .....++-.+....|++..+..++.++.......++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-- 101 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc--
Confidence 345678899999999999999999999998877654433 344555566677889999999999999877553332
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+.........-|..++..|+|.+|...|-.+
T Consensus 102 -~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 102 -DPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 12224455566788888999999999998876
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.40 E-value=0.18 Score=50.37 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc-----CCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccC
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT-----NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct-----s~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~ 252 (971)
+..-.++..+|..|...|++++|.++|.++.+.+. ..........++-.+....|+|..+..++.++-.......
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999999999999999999877652 1234466777777888888999999999999877633221
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+ .+ ........-|..++..|+|..|...|-.+
T Consensus 162 ~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 162 GPD-DP-NVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp CTT-CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCC-CH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 11 12344455677888999999999999775
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.36 E-value=0.66 Score=45.97 Aligned_cols=101 Identities=7% Similarity=-0.013 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..|...|++++|+++|.++..... ...+....+-.+....|+|..+...+.++-..-..... .....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNY---NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT---IEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc---chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---HHHHH
Confidence 3566799999999999999999999876543 24567777788888899999999999998764321110 01112
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..++..|+|..|...|-.+
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 344567788889999999999999887
No 60
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.32 E-value=0.8 Score=47.41 Aligned_cols=94 Identities=21% Similarity=0.164 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..++..|++++|+++|.++.+..+. ..+....+-.+....|+|..+...+.++-.... + .
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~--~----- 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM---D--F----- 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T--C-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C--c-----
Confidence 46889999999999999999999998876543 246777888888899999999999999876421 1 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 234466777888999999999999876
No 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.31 E-value=0.15 Score=49.95 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc-------------hhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH-------------VVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h-------------~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-..+..+|..++..|++++|+++|.++...+..... ...+..++-.+.+..++|..+..++.++-..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445788999999999999999999999887644321 1356667777778889999999999998765
Q ss_pred CcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 248 PDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 248 id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-. + . .+.....|..++..|+|..|...|-.+
T Consensus 118 ~p---~--~-----~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 118 DK---N--N-----VKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp ST---T--C-----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Cc---c--c-----HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 21 1 1 234456788889999999999998876
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.20 E-value=2 Score=42.64 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.++|.++.+.... .......+..+....|+|..+...+.++..... .. .
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~---~---- 139 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL-YP---E---- 139 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT-CT---T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc-Cc---c----
Confidence 457888999999999999999999998776432 245666777778888999999999998866111 11 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......-|..++..|+|.+|...|-.+
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234455677788899999999998876
No 63
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.19 E-value=0.21 Score=52.41 Aligned_cols=105 Identities=8% Similarity=-0.035 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC---chhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK---HVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~---h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
...++.+|.+|...|++++|+++|.++.+...... .......++-.+....|+|..+..++.+|-...+..++ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~---~ 191 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---N 191 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---C
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc---c
Confidence 34466799999999999999999999877654322 22445556666677789999999999999765433322 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+.+...+..--|..+...|+|.+|..+|-.+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 2222245556788889999999999999876
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.19 E-value=2.4 Score=40.75 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..++..|++++|.++|.++....+. ..+....+..+....|+|..+...+.++-..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~---- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-----S---- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----C----
Confidence 446777888888888888888888887766532 2445556666677778888888888877654211 0
Q ss_pred HHHHHHHHHHHHhhc-cCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELAT-RKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~-r~yk~AA~~FLea 288 (971)
......-|..++.. |+|..|...|-.+
T Consensus 76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp -HHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 12234456666777 8888888887766
No 65
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.16 E-value=0.14 Score=53.61 Aligned_cols=124 Identities=13% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC----CCchhhHHHHHHHHHHHhhcHHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN----GKHVVDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts----~~h~idm~l~lIrv~I~~~dw~~ 236 (971)
++.++.-|+-...+.-......++..+|..|...|+++.|+++|.++.+.... ......++.++-.+....+++..
T Consensus 135 i~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 135 ILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 44455545422222222334567899999999999999999999998765432 22344567788888889999999
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhcc-CHHHHHHHHhhc
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATR-KYKTAARFFLQA 288 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r-~yk~AA~~FLea 288 (971)
+..++.+|-......++. ...+.+...-|..+...| +|++|...|-.+
T Consensus 215 A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 215 SLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTBC----TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999997764333221 124667777888899999 579999888776
No 66
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.15 E-value=0.15 Score=55.40 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc---hhhHHHHHHHHHHHhhc
Q psy11733 158 AMKLEKLDNDLKNYKSNSI-KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH---VVDMCLNVIRVSVYLQN 233 (971)
Q Consensus 158 ~~~le~Le~eLk~yk~Nli-KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h---~idm~l~lIrv~I~~~d 233 (971)
..-++.++.-++-++.+.. ...+-.++..+|..|...|+++.|.++|.++.+.+...+. ......++-.+....|+
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555666666665544 5567888999999999999999999999998887653332 23445556666778899
Q ss_pred HHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 234 WSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 234 w~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..+..++.++-.......+ |.. ......-|..+...|+|..|...|-.+
T Consensus 238 ~~~A~~~~~~al~~~~~~~~----~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP----DLL-PKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCC----hhH-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999775443221 222 444556677888999999999998876
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.12 E-value=0.22 Score=43.50 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..|...|++++|.+.|.++...... ....+..+..+....++|..+...+.++...... .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~---- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------S---- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C----
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------c----
Confidence 35778999999999999999999998765432 2455666777777889999999999888654211 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..+...|+|..|...|-.+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKA 95 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 122344566778899999999888765
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.08 E-value=0.22 Score=50.88 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh-----cCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCccc
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYC-----TNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFA 251 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc-----ts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~ 251 (971)
......++..+|..|...|++++|.++|.++...+ ............+..+....|+|..+..++.++.......
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 35567789999999999999999999999987765 2234456677777888888999999999999987764322
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 252 EGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 252 ~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+... + ........-|..++..|+|..|...|-.+
T Consensus 145 ~~~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 145 LGKDH-P-DVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HCTTC-H-HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCC-h-HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10001 1 13444556677888999999999998876
No 69
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.95 E-value=0.26 Score=46.83 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+.--.+++.+|..++..|++++|.++|.++...... ..+..+++-.+....|+|..+...+.++-.+-. .+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~---- 88 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XE---- 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC----
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC----
Confidence 444567889999999999999999999998776542 245556666777888999999999999876521 11
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 89 ----~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 89 ----PRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123456688899999999999998765
No 70
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.94 E-value=0.12 Score=56.95 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC------CCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCccc
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN------GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFA 251 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts------~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~ 251 (971)
+..-..+..||..|+..|++++|+++|.++.+.... ....+....++-.+...+|++..+..++.|+..+....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 333445778999999999999999999997665421 11123333455556778899999999999997753321
Q ss_pred CCCCChhHHHHHHHHHHHHH--HhhccCHHHHHHHHhhc
Q psy11733 252 EGKDNNQAVFTKLKVAAGLA--ELATRKYKTAARFFLQA 288 (971)
Q Consensus 252 ~d~~r~~~l~~kLk~~~GL~--~L~~r~yk~AA~~FLea 288 (971)
.+..+ + ..+.+.+-.|.. .++.++|+.|..+|-.+
T Consensus 128 ~~~~~-~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 128 SSPYR-I-ESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp CCSSC-C-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred ccccc-h-hhHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 11100 0 012333444544 45567899999999876
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.93 E-value=0.17 Score=53.31 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..++..|++++|.++|.++...... ......++-.+....|+|..+...+.++-..- ++ .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~--~----- 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD---GQ--S----- 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TT--C-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC--C-----
Confidence 46788999999999999999999998776432 34666777778888999999999999987642 11 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234456688899999999999999765
No 72
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.92 E-value=0.15 Score=43.62 Aligned_cols=95 Identities=14% Similarity=-0.003 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
++..+|..+...|++++|.++|.++...... ..+..+++-.+....++|..+...+.++-...... .. .
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~----~ 76 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YN----K 76 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TC----H
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----ch----H
Confidence 4567899999999999999999998776532 24566777777888899999999999987653210 01 2
Q ss_pred HHHHHHHHHHhhc-cCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELAT-RKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~-r~yk~AA~~FLea 288 (971)
.....-|..++.. |+|++|...|-.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445667788899 9999999999876
No 73
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.88 E-value=0.29 Score=42.38 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..+...|+++.|.++|.++...... ..+.++.+..+....+++..+...+.++-.... + .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~---~--- 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---N---N--- 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---c---c---
Confidence 356888999999999999999999998776432 246677777888888999999999998865421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 123345566778899999999998775
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.76 E-value=0.33 Score=45.10 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+.--..++.+|..++..|++++|.+.|.++....+. ..+..+++-.+....|+|..+...+.++-..-. . +
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~ 85 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDI--N----E 85 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T----C
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--C----C
Confidence 334556888999999999999999999998765432 245666666777788999999999999876521 1 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 86 ----~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 86 ----PRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123456788899999999999998765
No 75
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.71 E-value=2.4 Score=42.11 Aligned_cols=95 Identities=20% Similarity=0.097 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..|...|++++|.++|.++.+.... .......+..+....|+|..+...+.++-..... .
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~--- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSR------N--- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------c---
Confidence 567889999999999999999999998876532 2466777777888899999999999988654211 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 105 -~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 105 -ARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233445567788899999999999887
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.69 E-value=0.25 Score=50.48 Aligned_cols=105 Identities=11% Similarity=-0.046 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH--------hhcHHHHHHHHHHHhccCcccC
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY--------LQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~--------~~dw~~V~~~v~KAk~~id~~~ 252 (971)
-.+++.+|..|+..|++++|++.|.++....+......+..+.+-.+... .|++..+...+.++-..-....
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 56789999999999999999999999988776655666777777777777 8999999999998865421111
Q ss_pred CCCChhHHHHHH----------HHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKL----------KVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kL----------k~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+....++ ....|..++..|+|..|...|-.+
T Consensus 132 ---~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 132 ---LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 111111111 145678889999999999998775
No 77
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.088 Score=45.66 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..++..|++++|+++|.++....+. ......++-.+....|+|..+...+.++-..-...+ .+...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~ 77 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE----HVAIR 77 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT----SHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 46788999999999999999999998876543 245667777788889999999999999876532211 12223
Q ss_pred HHHHHHHHHHHhhccCHHHHHHH
Q psy11733 262 TKLKVAAGLAELATRKYKTAARF 284 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~ 284 (971)
.......|..+...|++..|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhH
Confidence 44455566666666666555443
No 78
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.60 E-value=0.32 Score=50.95 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
..+..+|.+|...|++++|+++|.++.+........ +.+..++-.+....|+|..+..+..+|-...+.... .+
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~ 192 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NE 192 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---CH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ch
Confidence 345569999999999999999999988765433332 334455555667789999999999999765443211 12
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....+..--|..+...|+|.+|...|-.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 234555566778889999999999998876
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.57 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+..-.++..+|..|...|++++|.++|.++.+.... .......+..+.+..|+|..+...+.++-.... +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~---- 205 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---N---- 205 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---H----
Confidence 445667899999999999999999999998876543 246677777888889999999999999865421 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
........|..+...|+|..|...|-.+
T Consensus 206 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 206 ---FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1234456678888999999999988765
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.34 E-value=4.2 Score=40.06 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..+|..|+..|++++|+++|.++.+...... ....+++-.+....|+|..+..++.++-..-. + .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~-------~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD--SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY---N-------L 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---S-------H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc---c-------h
Confidence 5688899999999999999999999888764222 24555666777788999999999999875321 1 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344556778889999999999999876
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.25 E-value=0.41 Score=46.63 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCC--C-----
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEG--K----- 254 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d--~----- 254 (971)
.++..+|..|...|++++|+++|.++...... ....+.++-.+....|+|..+...+.++-........ +
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 47889999999999999999999998776532 3466777778888899999999999998765322110 0
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
...|. .......-|..+...|+|..|...|-.+
T Consensus 115 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 115 QFKLF-ACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp CCEEE-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCcc-chHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 00010 2345567788889999999999999876
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.08 E-value=0.48 Score=41.20 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..+...|++++|.+++.++...... .....+.+..+....++|..+...+.++...... .
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~---- 102 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------S---- 102 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------C----
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C----
Confidence 45778999999999999999999998776432 2455667777788889999999999887654211 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|++..|...|-.+
T Consensus 103 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 103 AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 122344566678899999999988765
No 83
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.98 E-value=0.38 Score=48.49 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
-.++..+|..|...|++++|+++|.++.+..+. ..+....+-.+....|+|..+...+.++-.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 444566666666666666666666665554322 224444555555556666666666655544
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.96 E-value=0.5 Score=43.85 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..|...|++++|.+++.++...... ..+....+..+....++|..+...+.++...... .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~---- 109 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------N---- 109 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------h----
Confidence 45778889999999999999999888776432 2456666777777888999888888887654211 1
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......|..+...|+|..|...|-.+
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 233445566777888999888888765
No 85
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.89 E-value=0.44 Score=54.12 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC------------chhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK------------HVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~------------h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
..-.++..+|..|++.|+|++|+++|.++........ .....+.++-.+.+..++|..+..++.+|-.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3445688899999999999999999999988765432 1256677777888889999999999999876
Q ss_pred cCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 247 TPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 247 ~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+-. + + .+.....|.+++..++|..|...|-.+
T Consensus 346 ~~p---~--~-----~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 346 LDS---A--N-----EKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HST---T--C-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCC---c--c-----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 521 1 1 233456688899999999999999887
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.80 E-value=2.3 Score=41.64 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.++|.++.+.... .......+..+....|+|..+...+.++...... .
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~--- 124 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------N--- 124 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------S---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------C---
Confidence 457888999999999999999999998776432 3466677777888889999999999988664321 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+....|..++..|+|..|...|-.+
T Consensus 125 -~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 125 -GDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123455677788899999999998776
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.69 E-value=0.48 Score=45.13 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHH-HHHhhcH--HHHHHHHHHHhccCcccCCCCChh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRV-SVYLQNW--SHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv-~I~~~dw--~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
.++..+|..|...|++++|.++|.++....... .+..+.+-.+ ....+++ ..+...+.++-.... + .
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~---~- 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS---N---E- 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---T---C-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---C---c-
Confidence 478899999999999999999999988776532 3455555555 5567898 999999988865421 1 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 115 ---~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 115 ---ITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 233455677888999999999999876
No 88
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.66 E-value=0.52 Score=45.48 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 182 RGHDDLGDHYLDC-GDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 182 ~~~~dLg~~y~~i-GDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
.++..+|..|... |++++|.++|.++.. .............+..+....|+|..+...+.++-.... + .
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--~---- 146 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---Q--F---- 146 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---T--C----
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--C----
Confidence 4678899999999 999999999999877 322333456777778888889999999999998865421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 147 -PPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123345566788899999999998765
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.65 E-value=0.76 Score=45.82 Aligned_cols=105 Identities=15% Similarity=0.015 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC------Cch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCccc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG------KHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFA 251 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~------~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~ 251 (971)
-..+..+|.-+++.|+|++|+++|.++..+..+. .+. ...+.+.-.+...+|+|..+.....+|-.+.+..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3457789999999999999999999999888652 111 1245555566667899999999999997751111
Q ss_pred CCCCChhHHHHHHH----HHHHHHHhhccCHHHHHHHHhhc
Q psy11733 252 EGKDNNQAVFTKLK----VAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 252 ~d~~r~~~l~~kLk----~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..-+.. ..+.+ .-.|.++...|+|.+|...|=.+
T Consensus 91 ~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 100000 23445 56788999999999999999876
No 90
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.63 E-value=3 Score=45.22 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-..+..+|..|+..|++++|+++|.++.+..+. .......+..+....|++..+...+.++-..-. + .
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~--~---- 93 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM---D--F---- 93 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--C----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---C--c----
Confidence 456888999999999999999999998876543 256777778888889999999999999865421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 94 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 94 -TAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233445677788999999999999876
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.61 E-value=0.45 Score=51.66 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCC------------chhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK------------HVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~------------h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
..-.++..+|..|+..|++++|+++|.++........ .....+.++-.+.+..++|..+..++.++-.
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999888765432 1146777778888889999999999999876
Q ss_pred cCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 247 TPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 247 ~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+-. + + .+.....|.+++..|+|..|...|-.+
T Consensus 225 ~~p---~--~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 225 LDS---N--N-----EKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HCT---T--C-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCC---C--c-----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 521 1 1 234456688899999999999999876
No 92
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=93.58 E-value=0.54 Score=48.46 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=89.1
Q ss_pred HHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccC--CchhHHHHHHHHHHHHHhccCHHHH---HHH-----HHHHhc--C
Q psy11733 750 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT--NGKHVVDMCLNVIRVSVYLQNWSHV---LSY-----VNKAEA--T 817 (971)
Q Consensus 750 IR~g~~dlg~~y~~iGDl~~Alkay~r~rdyct--s~gh~IDm~l~lIRV~if~~D~~~V---~~~-----i~KA~~--~ 817 (971)
+-.=+.-+|.+++.-+|+.+|.+++..+..+|. +.+++.-+...+|=+.+..|+.+.- .++ ..=+++ .
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~L~~Avr~ 92 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSE 92 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHHHHHHHHh
Confidence 334456789999999999999999999999996 5578888888888888888875432 221 111111 1
Q ss_pred ---CChhhhhcchh--hh-----hhhccchh--HHHHHHHh------hcCChhHHHHHHHH-------HHHHHHHHHhhh
Q psy11733 818 ---PDFAEVIFSSG--FK-----LFLELEPQ--LRDILVQF------YNSKYATCLNLLAQ-------IMALENELMTLI 872 (971)
Q Consensus 818 ---rdf~~vi~s~~--f~-----~~Le~~P~--lr~li~sf------y~~~Y~~~~~~L~~-------imaie~EL~~fI 872 (971)
..|.++++.-+ |. ..++..++ +|.++..- ..=.++.+-..|.- ...+|.=|+.+|
T Consensus 93 Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI 172 (203)
T 3t5x_A 93 GNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLI 172 (203)
T ss_dssp TCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 12334432211 11 12222211 33333321 11223444433321 134788899999
Q ss_pred hcCccceeeccCCCeEEecCCC
Q psy11733 873 LDGQIQARIDSHNKILYAKQQD 894 (971)
Q Consensus 873 ~~G~L~arID~vngvl~t~r~D 894 (971)
.+|.|.+.||..+|+++-.+.|
T Consensus 173 ~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 173 YMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHTSSCEEEETTTTEEEECSSC
T ss_pred HcCceEEEEcccccEEEECCCC
Confidence 9999999999999987766555
No 93
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.54 E-value=0.97 Score=45.27 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+..-.++..+|..|...|++++|.++|.++.+.... ..+....+..+....|+|..+...+.++-..-.. .
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~- 110 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----Y- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-----c-
Confidence 445678899999999999999999999998776432 3466677777888899999999999998765211 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 111 ----~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 111 ----NYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123345567788899999999998876
No 94
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.47 E-value=4.1 Score=46.21 Aligned_cols=94 Identities=12% Similarity=-0.071 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 181 RRGHDDLGDHYLDCGDL-SNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl-~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
-..++.+|..|...|++ ++|.++|.++...... ..+...++-.+....|+|..+...+.++-..- ++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~------ 169 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KN------ 169 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CC------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC------
Confidence 45788999999999999 9999999998776532 35677777778888999999999999987642 11
Q ss_pred HHHHHHHHHHHHHhhc---------cCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELAT---------RKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~---------r~yk~AA~~FLea 288 (971)
......-|..+... |+|.+|...|-.+
T Consensus 170 --~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 170 --KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp --HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 13345556677788 9999999999876
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.41 E-value=0.52 Score=43.42 Aligned_cols=97 Identities=11% Similarity=0.004 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..|...|++++|.++|.++...... ..+..+.+-.+....|++..+...+.++-..... ++.
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~~- 116 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH------DKD- 116 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHH-
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHH-
Confidence 346888999999999999999999998776532 2456677777788889999999999998765221 111
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.......+..++..|+|.+|...|-..
T Consensus 117 -~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 117 -AKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 122233344466789999998887654
No 96
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=93.22 E-value=1.6 Score=46.61 Aligned_cols=124 Identities=9% Similarity=-0.018 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhccch--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHhhcHHHH
Q psy11733 162 EKLDNDLKNYKSNSIK--ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH--VVDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 162 e~Le~eLk~yk~NliK--eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h--~idm~l~lIrv~I~~~dw~~V 237 (971)
+.++.-++-++..... .....++..+|..|+..|++++|.+++.+..+.+...+. .......+-++....|++..+
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3444444444443332 346677888999999999999999999998888765432 345566777888899999999
Q ss_pred HHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 238 LSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 238 ~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
...+.++.......+. .......+....+..++..|++..|...+-.+
T Consensus 194 ~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKY---HSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHHHHHTTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCc---chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999998766332221 11111111123334467899999999988766
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.20 E-value=5.6 Score=40.58 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|+++|.++....... ....+.+..+....|++..+...+.++...... .
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~--- 192 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------D--- 192 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------C---
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------C---
Confidence 4568899999999999999999999988776432 344556677778889999999999988764311 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 193 -~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 193 -PFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 234455677788999999999998775
No 98
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.16 E-value=4.3 Score=41.81 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHH------------HHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNV------------IRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~l------------Irv~I~~~dw~~V~~~v~KAk~~id 249 (971)
.++..+|..|...|++++|.++|.++....++.+...+....+ ..+....|+|..+...+.++-....
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999877654111222333222 4667778999999999998865421
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 250 FAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 250 ~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
. . ......-|..++..|+|..|...|-.+
T Consensus 152 ~------~----~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 152 W------D----AELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp T------C----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C------c----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1 234456677788999999999998876
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.09 E-value=0.78 Score=42.47 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.++|.++...... .......+..+....|+|..+...+.++-.... + .
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~---~--- 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---N---E--- 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---c---c---
Confidence 456888999999999999999999998776543 245667777788889999999999998865421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 144 -GKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233455667788899999999988765
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.92 E-value=0.5 Score=52.40 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC-------------CCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN-------------GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts-------------~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-..+..+|..+++.|++++|+++|.++..++.. .......+.++-.+.+..++|..+..++.+|-..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345788999999999999999999998775422 1223456667777788889999999999998764
Q ss_pred CcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 248 PDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 248 id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
- ++ . .+.....|.+++..++|.+|...|-.+
T Consensus 303 ~---p~--~-----~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 303 D---PS--N-----TKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp C---TT--C-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---ch--h-----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 11 1 244456678889999999999998876
No 101
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.87 E-value=0.66 Score=45.56 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.++|.++.+.... ..+....+..+.+..|+|..+...+.++...... .
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~--- 158 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------D--- 158 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------C---
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------c---
Confidence 456888999999999999999999998877643 2456677777888899999999999988654221 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 159 -~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 159 -TEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234456677788999999999998876
No 102
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.65 E-value=0.89 Score=43.29 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|.+.|++++|++.+.++...... ........-.+....++|..+...+.++...... +
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~------- 106 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--Y------- 106 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c-------
Confidence 457888999999999999999999888776543 2345555556677788999999988888654221 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|.+|...|-.+
T Consensus 107 -~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 107 -ADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 233455688888999999999988765
No 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.77 Score=50.57 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
--.++..+|..+++.|++++|+++|.++....+ . ......+..+.+..|+|..+...+.++-..- ++ .
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~--~--- 72 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE--D--PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PD--Y--- 72 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SC--C---
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--c--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hH--H---
Confidence 346789999999999999999999999987763 2 5677788888889999999999999987542 11 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 73 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 73 --SKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233455677788999999999999875
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.57 E-value=0.37 Score=44.51 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
+.-.++.++|.-|.+.||+++|+++|.++.+..... .+..+++-.+-+..++|........+|-.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 344567788889999999999999999987765433 45666777777778888888888887755
No 105
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.51 E-value=10 Score=38.68 Aligned_cols=94 Identities=19% Similarity=0.063 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 182 RGHDDLGDHYLDCG-DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 182 ~~~~dLg~~y~~iG-Dl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
.++..+|..+...| ++++|.++|.++...... ..+....+..+....|+|..+...+.++.......
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------- 158 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC--------- 158 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---------
Confidence 46888999999999 999999999998776432 34567777788888999999999999987653221
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|..|...|-.+
T Consensus 159 -~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 159 -HLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp -SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122344677888999999999999886
No 106
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.32 E-value=3.7 Score=41.93 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..++..|++++|.++|.++.+.... .......+..+....|+|..+...+.++..... + . .
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~---~----~ 89 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDP---K---D----I 89 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---C---C----H
Confidence 4678899999999999999999998776542 345666777778888999999999998876521 1 1 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..+...|+|..|...|-.+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455677788999999999998775
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.07 E-value=1.7 Score=43.62 Aligned_cols=104 Identities=12% Similarity=-0.029 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH------------------hhcHHHHHHHHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY------------------LQNWSHVLSYVN 242 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~------------------~~dw~~V~~~v~ 242 (971)
..+++.+|..|+..|++++|++.|.++....+.....-+..+.+-.+... .+++..+...+.
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 46788999999999999999999999887765544433333333222221 468888888888
Q ss_pred HHhcc-CcccCCCCChhHHHHHH----------HHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 243 KAEAT-PDFAEGKDNNQAVFTKL----------KVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 243 KAk~~-id~~~d~~r~~~l~~kL----------k~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++-.. ++... .+....++ ....|..++..|+|..|...|-.+
T Consensus 121 ~~l~~~P~~~~----a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 121 KLVRGYPNSQY----TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp HHHTTCTTCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 77553 22211 11111111 235577888999999999998775
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.02 E-value=2.9 Score=44.59 Aligned_cols=123 Identities=7% Similarity=-0.088 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc-----hhhHHHHHHHHHHHhhcHH
Q psy11733 161 LEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH-----VVDMCLNVIRVSVYLQNWS 235 (971)
Q Consensus 161 le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h-----~idm~l~lIrv~I~~~dw~ 235 (971)
.+.++.-++-+...........++..+|..+...|++++|.++|.+....+...+. ......++-.+....|++.
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 34445445444444444455667889999999999999999999998776643221 2233444556677889999
Q ss_pred HHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 236 HVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 236 ~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.+..++.++-......++ +. .......-|..++..|+|..|...|-.+
T Consensus 153 ~A~~~~~~al~~~~~~~~----~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQP----QQ-QLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHTTTSCG----GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCc----HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998776543221 11 1233345566788899999999988765
No 109
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.00 E-value=0.59 Score=41.54 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.+++.+|..|+..|++++|.++|.++....+......+..+.+-.+....|++..+...+.++-..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578889999999999999999999988876655555677778888888899999999999988654
No 110
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.97 E-value=0.34 Score=52.68 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCc--------------hhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKH--------------VVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h--------------~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..+..+|..+++.|++.+|+++|.++...+..... ...+++++-.+....++|..+..++.++-..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34778999999999999999999998776532110 0135566666777889999999999998654
Q ss_pred CcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 248 PDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 248 id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-. + + .+.....|.+++..|+|..|...|-.+
T Consensus 260 ~p---~--~-----~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 260 EE---K--N-----PKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp CT---T--C-----HHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CC---C--C-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 21 1 1 244566788899999999999999887
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.91 E-value=1.1 Score=45.05 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++.+|..+++.|++++|++.|.++....+.+....+..+.+..+....|+|..+...+.++-..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999988766555555577788888888899999999999987653
No 112
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.84 E-value=0.89 Score=41.52 Aligned_cols=92 Identities=9% Similarity=-0.016 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
++.+|..+.+.|++++|.++|.++...... ..+..+.+-.+....|+|..+...+.++-..-- + . ..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~--~-----~~ 86 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDP---K--D-----IA 86 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--C-----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C--C-----HH
Confidence 577899999999999999999988765432 245666666677788999999999998865421 1 1 12
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
....-|..+...|+|.+|...|-.+
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456677788899999999888765
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.65 E-value=0.62 Score=45.31 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..++..|++++|+++|.++.+. ......++-.+....|+|..+..++.++-..-. + . .
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~---~----~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---H---L----A 71 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---c---c----h
Confidence 4788999999999999999999887321 245677777778889999999999999876421 1 1 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..++..|+|..|...|-.+
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33456678888999999999998876
No 114
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.58 E-value=0.71 Score=46.25 Aligned_cols=95 Identities=18% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
--.++..+|..|...|++++|+++|.++.... ...+..+++-.+....|+|..+...+.++-..- ++ +
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~---~-- 184 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PK---D-- 184 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TT---C--
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---C--
Confidence 34678899999999999999999999987765 235677788888888999999999999886542 11 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+...-|..++..|+|.+|...|-.+
T Consensus 185 --~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 --LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --HHHHHHHHHHHTC--------------
T ss_pred --hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 123345577788999999998887654
No 115
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.56 E-value=15 Score=38.36 Aligned_cols=65 Identities=6% Similarity=-0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.-.++..+|..|...|++++|.++|.++.+.... ..+....+..+....|++..+...+.++-..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556777888888888888888888887766432 3456666667777778888888888777654
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.28 E-value=3.3 Score=40.97 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHH----------------HHHHHHHhhcHHHHHHHHHHHh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLN----------------VIRVSVYLQNWSHVLSYVNKAE 245 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~----------------lIrv~I~~~dw~~V~~~v~KAk 245 (971)
..+...|..+++.|++++|+++|.++....+. ..+..+. +-.+....|++..+...+.++-
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34677899999999999999999997665432 1233334 5566677899999999999886
Q ss_pred ccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 246 ATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 246 ~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..- ++ . ......-|..++..|+|.+|...|-.+
T Consensus 82 ~~~---p~--~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 82 QKA---PN--N-----VDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHC---TT--C-----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHC---CC--C-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11 1 123455677889999999999999876
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.21 E-value=0.98 Score=47.90 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
...+..+|..|...|++++|.++|.++...... ......++..+....|+|..+...+.++-..-. + .
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~---~--- 280 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP---G---F--- 280 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C---c---
Confidence 346888999999999999999999998877543 245667777788889999999999999866421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|.+|...|-.+
T Consensus 281 -~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 281 -IRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233455677888999999999999875
No 118
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.14 E-value=1.4 Score=44.15 Aligned_cols=95 Identities=18% Similarity=0.067 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh-----------hcHHHHHHHHHHHhccCc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-----------QNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~-----------~dw~~V~~~v~KAk~~id 249 (971)
-.++..+|..+.+.|++++|+++|.++....+. ..+...++-.+.... |++..+...+.++-..-
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 114 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN- 114 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-
Confidence 457889999999999999999999998776542 245666666667777 99999999999886642
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 250 FAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 250 ~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++ . ......-|..+...|+|.+|...|-.+
T Consensus 115 --P~--~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 115 --PR--Y-----APLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp --TT--C-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --cc--c-----HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 1 233456788889999999999999876
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.03 E-value=1.3 Score=46.55 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
...+..+|..|...|++++|.++|.++...... .......+..+....|+|..+...+.++-..-. + .
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~---~--- 284 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQP---G---Y--- 284 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---c---
Confidence 456888999999999999999999998776432 245667777888889999999999999866421 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 285 -~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 285 -IRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233456677888999999999998765
No 120
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.92 E-value=1.5 Score=44.85 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|.++|.++.+.... ..+....+..+....|+|..+...+.++-..... .
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~--- 239 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALDINPG------Y--- 239 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------C---
Confidence 357889999999999999999999998876543 2456677777888899999999999988654211 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|..|...|-.+
T Consensus 240 -~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 240 -VRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123345577788999999999998765
No 121
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.08 E-value=8.1 Score=42.34 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++..+|..|...|++++|.+.|.++....... .+....+..+....|+|..+...+.++-..
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5667777888888888888888777776654322 345555666666677777777777776543
No 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.05 E-value=1.9 Score=46.73 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHH---------HHHHHHHHHhhcHHHHHHHHHHHhccCcccC
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMC---------LNVIRVSVYLQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~---------l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~ 252 (971)
.++..+|..|...|++++|+++|.++.............. +.+..+....|+|..+...+.++-.....
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--
Confidence 4566777777777777777777777765543322221111 22255566667777777777776553211
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
++.....+...-|..+...|+|.+|...|-.+
T Consensus 290 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 290 ----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp ----SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12333445566677778888888888887665
No 123
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.89 E-value=1.1 Score=49.94 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
++.-..+..+|..+++.|++++|+++|.++....+. ..+...++..+.+..|+|..+...+.++-..- ++ .
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~--~- 92 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK---PD--H- 92 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT--C-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc--h-
Confidence 345667899999999999999999999998876542 24677788888889999999999999986542 11 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHH
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFF 285 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~F 285 (971)
......-|..++..|+|..|...|
T Consensus 93 ----~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 93 ----SKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455677788999999999998
No 124
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.45 E-value=1.8 Score=45.74 Aligned_cols=93 Identities=14% Similarity=-0.003 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
.++.+|..++..|++++|.++|.++....+. ..+....+..+....|++..+...+.++-..-. + . .
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---~----~ 133 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQP---N---N----L 133 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---C---C----H
Confidence 4788999999999999999999998876543 356777888888889999999999999876421 1 1 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..+...|+|..|...|-.+
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHH
Confidence 33455677788999999999998775
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=89.27 E-value=0.48 Score=44.89 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHH
Q psy11733 186 DLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLK 265 (971)
Q Consensus 186 dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk 265 (971)
.||..+.+.||++.|++.|.+....- ...-...+.+-++....|+|..+.+++.++-..-. + + ....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p---~---~----~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE---R---D----PKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---C----HHHH
Confidence 37899999999999999998764422 22234556777888889999999999999876521 1 1 2344
Q ss_pred HHHHHHHhhccCHHHHHHHHhhc
Q psy11733 266 VAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 266 ~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..-|..+...|+|..|...|-.+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHH
Confidence 56788889999999999999876
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.92 E-value=3.7 Score=44.47 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
.+....+|..+.+.|+|++|.+.|..+.. ..+++. ..+..-.+.+..++|..+...+.++.... .+..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--------d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP--------DKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------CHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------Cccc
Confidence 44466789999999999999999977644 234444 56666668888999999999987543322 1233
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChH
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRS 319 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~ 319 (971)
.+....+-|.++-..|+|.+|...|-.+. ....-|.. +.+...|.++|-.......
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~--~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEAC--ARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTT--HHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccc--cHHHHHHHHHHHHHcCCHH
Confidence 45677888999999999999999998873 11100111 4567788888776655443
No 127
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.89 E-value=3.5 Score=47.84 Aligned_cols=123 Identities=9% Similarity=-0.061 Sum_probs=87.1
Q ss_pred HHHHHHHHhhccch--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhhcCCCch--hhHHHHHHHHHHHhhcHHH
Q psy11733 164 LDNDLKNYKSNSIK--ESIRRGHDDLGDHYLDCGDLSNALKCYSRA---RDYCTNGKHV--VDMCLNVIRVSVYLQNWSH 236 (971)
Q Consensus 164 Le~eLk~yk~NliK--eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~---Rdycts~~h~--idm~l~lIrv~I~~~dw~~ 236 (971)
++.-|+..+.-++. .++-..+..||..|.+.|+|++|..+|.++ ++..-++.|- ...+.++-.+....|+|..
T Consensus 332 ~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~e 411 (490)
T 3n71_A 332 CRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEV 411 (490)
T ss_dssp HHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence 34555666666664 457888999999999999999999999984 4445556653 3444555556667799999
Q ss_pred HHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 237 VLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 237 V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+...+.+|-.+.+..-+.+ +|.+ ..+...-+-.++.+|.|+.|-..|..+
T Consensus 412 A~~~~~~Al~i~~~~lG~~-Hp~~-~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 412 GHGMICKAYAILLVTHGPS-HPIT-KDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTCTT-SHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-ChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988765533222 3443 334455566777888898888777654
No 128
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.81 E-value=2.2 Score=48.28 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc----CCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCT----NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct----s~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
..+..+|..|.+.|++++|.+.|.++.+... .+.........+..+....|++..+...+.++...- ++ +
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~---~ 549 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---TN---D 549 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SC---C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC---C
Confidence 4577888888888888888888888776642 333335677777888888889888888888876542 11 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|++|...|-.+
T Consensus 550 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 550 ----ANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 123344556677889999999988765
No 129
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.72 E-value=1.9 Score=52.46 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHh
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 245 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk 245 (971)
-.++..||..|.+.|++++|+++|.++.+... ...+...++-.+....|++..+.+.+.||-
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P---~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISP---TFADAYSNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555444321 122344444444444455555555555443
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.66 E-value=1.4 Score=40.41 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
+.-.++..||.-|++.|++++|+++|.++.+..... .+...++-.+.+..++|.....+..+|-.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445678899999999999999999999998876543 45567777778888999988888887754
No 131
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.63 E-value=1.9 Score=35.53 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-.++..+|..|...|++++|.++|.++...... .....+.+-.+....+++..+...+.++-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456888999999999999999999998876543 2456667777788889999999999988664
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=88.61 E-value=2.2 Score=38.06 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.+.--.++..+|..|...|++++|+++|.++....+.. .+..+.+-.+....|++..+...+.++-..
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566789999999999999999999999988775432 566777777788899999999999988654
No 133
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.55 E-value=20 Score=37.69 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.+.-+|..|...|++++|+++|.+ ....+....+..+....|++..+.+.+.++...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 466677777777777777776665 123456666666666667777777777666543
No 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.44 E-value=2.6 Score=42.02 Aligned_cols=93 Identities=13% Similarity=-0.061 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
.++..+|..|...|++++|.++|.++....... .+....+..+....|++..+...+.++...... .+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~-- 146 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DPF-- 146 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------ChH--
Confidence 467889999999999999999999988765432 466777778888899999999999998764221 111
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....++. +..|++..|...|-.+
T Consensus 147 --~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 147 --RSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp --HHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred --HHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 11122332 5569999999988665
No 135
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.25 E-value=1.9 Score=37.76 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
.+++.+|..|+..|++++|+++|.++.+.... ..+..+.+-.+....|+|..+...+.++-.+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46889999999999999999999998876543 34566777777788899999999999887653
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=88.18 E-value=3 Score=36.08 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++..+|..|...|++++|.++|.++...... .....+.+-.+....++|..+...+.++...
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 356888999999999999999999998776432 2456677777888899999999999988765
No 137
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=87.94 E-value=3.1 Score=46.20 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
+..+|..|...|++++|.++|.++....... .+....+..+....|+|..+...+.++...... . ..
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~----~~ 379 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT------L----PE 379 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C----TH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C----hH
Confidence 4444444444444444444444443332211 123333334444444444444444444332100 0 12
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+...-|..+...|+|..|...|-.+
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345577788899999999988765
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.69 E-value=1.7 Score=37.87 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC-Cch---hhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG-KHV---VDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~-~h~---idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..+..+|..|...|++++|.++|.++....... ... ....+.+-.+....++|..+...+.++...
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467889999999999999999999987765432 111 556677777788889999999999988764
No 139
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.52 E-value=1.9 Score=46.50 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=96.2
Q ss_pred HHHHHHHhhccCHHHHHHHHhhcccCCCCcccCC--Chh--HHHHHHHHHhhhcCChHHHHHhccCChhhhhhhccchHH
Q psy11733 266 VAAGLAELATRKYKTAARFFLQAHFDYCDFPELL--SPN--NIATYGGLCALATFDRSELEKQVIFSSGFKLFLELEPQL 341 (971)
Q Consensus 266 ~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ell--s~~--Dva~Y~~LcaLaS~dR~eLK~kVlds~efr~~Le~eP~l 341 (971)
...++..+..+|+..--.++-+--.=.+++.+.+ |++ .+.-|-.|.-|.+.+..++...+-.=+....-++..|.+
T Consensus 63 E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~I 142 (274)
T 4b4t_T 63 EVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLL 142 (274)
T ss_dssp HHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHH
Confidence 3556666777777655555444311012222222 333 466666677777766666654321001111112235665
Q ss_pred HH---HHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHH
Q psy11733 342 RD---ILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENE 418 (971)
Q Consensus 342 r~---lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~e 418 (971)
+- +-.++.+++|..|++.+..-.. . -...+-.++.|+..+|..++.-..+.|.+++++.+++.++.+- +++
T Consensus 143 k~al~le~al~eGnY~kff~l~~~~~~-p--~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s---~~e 216 (274)
T 4b4t_T 143 SYPIKLDRWLMEGSYQKAWDLLQSGSQ-N--ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNN---EKE 216 (274)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHTCTT-C--CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCS---HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCC-C--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCC---HHH
Confidence 54 4467889999999987765211 0 0112345678999999999999999999999999999999964 346
Q ss_pred HHHHHHcCce
Q psy11733 419 LMTLILDGQI 428 (971)
Q Consensus 419 Lv~LI~dgrL 428 (971)
+..++..-..
T Consensus 217 ~~~F~~~~gW 226 (274)
T 4b4t_T 217 TEKFALERNW 226 (274)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 7777776543
No 140
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.18 E-value=4.7 Score=43.05 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..|+..|++++|.++|.++.+... ...+...++..+....|++..+...+.++-.... . ++
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----~~-- 305 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--T----HA-- 305 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--T----CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--c----cH--
Confidence 34677788888888888888888888765432 2245666666777777888888888887765421 1 11
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..+...|+|.+|...|-.+
T Consensus 306 --~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 306 --DSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp --HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12233455566778888887777665
No 141
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.16 E-value=1.8 Score=52.64 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
.++..||..|.+.|++++|+++|.++.+... + ..+...++-.+....|++..+...+.+|-.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP--E-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666555432 1 234444444455555666666666665544
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.12 E-value=1.4 Score=37.28 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh-hcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-QNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~-~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..|...|++++|.++|.++...... ....+....+..+.... +++..+..++.++-..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 46788999999999999999999998876543 11356777778888889 9999999999988654
No 143
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.04 E-value=2.4 Score=37.87 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcC----CCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTN----GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts----~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.+.+|.++++.|+|..|..+|..+...-.. .-...++...+..+....|++..+..+..+|-..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 568999999999999999999997665422 2245677777777888889999999999988654
No 144
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=86.96 E-value=1.6 Score=45.95 Aligned_cols=74 Identities=8% Similarity=0.003 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhC-CChHHHHHHH
Q psy11733 341 LRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFN-TTIQALENEL 419 (971)
Q Consensus 341 lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFg-vsvd~lE~eL 419 (971)
+..+-....+|+|..|.+.+.. ++=+.+.+..|.+.||..+..-.-..|++|+++.+++.+| ++.+++++++
T Consensus 102 i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi 174 (226)
T 1rz4_A 102 ILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWM 174 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHH
Confidence 4455667899999999988764 2334556677889999999999999999999999999995 8888888777
Q ss_pred HH
Q psy11733 420 MT 421 (971)
Q Consensus 420 v~ 421 (971)
..
T Consensus 175 ~~ 176 (226)
T 1rz4_A 175 SK 176 (226)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 145
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.86 E-value=5.7 Score=39.23 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
...+|..|...|++++|+++|.++....+. ..+..+++-.+....|+|..+...+.++-.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 456888899999999999988887766432 2466677777777888888888888887654
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.70 E-value=2.1 Score=38.38 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=28.5
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
...+..+|..|...|+.++|+++|.++.+..... .+..+.+-.+....+++.....+..++
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555555554432221 333444444444445554444444444
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.58 E-value=3.1 Score=44.53 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
.-.++..+|..|...|++++|.++|.++....+ + ..+...++..+....|++..+...+.++-..- ++ .
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~--~--- 134 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--D-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PD--L--- 134 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--T-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TT--C---
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc--c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC--c---
Confidence 345799999999999999999999999876542 2 35667788888888999999999998876541 11 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..+...|+|.+|...|-.+
T Consensus 135 --~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 135 --YCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp --THHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 122344566778899999999998876
No 148
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.53 E-value=0.67 Score=40.88 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEc
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARID 433 (971)
..|.+++.-...|+++.+|+.||+|++.|.+.|..|...|.| -|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l-~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA-VRIQ 50 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE-EEEC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE-EEec
Confidence 456778888999999999999999999999999999999987 3443
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.21 E-value=5.4 Score=40.43 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
.++..+|..|...|++++|.++|.+..+ +++ .+.++.+-.+... .+++..+..++.++-..- +
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~---- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD----LKE-NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----Y---- 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC-HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----C----
Confidence 4677888888888888888888888766 222 3455555566666 788888888888875431 1
Q ss_pred hHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
......-|..+.. .+++.+|...|-.+
T Consensus 74 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 104 (273)
T 1ouv_A 74 ----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104 (273)
T ss_dssp ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence 1222344556666 88888888888766
No 150
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.14 E-value=0.93 Score=40.52 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=61.3
Q ss_pred hcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHH
Q psy11733 193 DCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAE 272 (971)
Q Consensus 193 ~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~ 272 (971)
..|++++|+++|.++.+...+........+++-.+....|+|..+...+.++-..-. + + ..+...-|..+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~---~----~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---N---H----QALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---c----hHHHHHHHHHH
Confidence 468999999999998775322233456777777888889999999999999866421 1 1 23445668889
Q ss_pred hhccCHHHHHHHHhhc
Q psy11733 273 LATRKYKTAARFFLQA 288 (971)
Q Consensus 273 L~~r~yk~AA~~FLea 288 (971)
+..|+|.+|...|-.+
T Consensus 72 ~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999998876
No 151
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=85.92 E-value=3.5 Score=47.43 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
++..+|..|...|++++|.++|.++.+.... ..+...++-.+....|+|..+...+.++-..-. + + .
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~---~----~ 91 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---E---H----P 91 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---C----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---C---C----H
Confidence 4555666666666666666666665544321 134444455555555666666666665544311 0 0 1
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..++..|+|.+|...|-.+
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12233344555566666666655544
No 152
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=85.91 E-value=12 Score=41.68 Aligned_cols=96 Identities=6% Similarity=-0.070 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChh
Q psy11733 180 IRRGHDDLGDHYLDCGD-LSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQ 258 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGD-l~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~ 258 (971)
--.++..+|..+...|+ +++|+++|.++...... ..+...++-.+....|+|..+...+.+|-.+-- + +
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP---~--~-- 199 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA---K--N-- 199 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT---T--C--
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---c--C--
Confidence 34578888999999995 99999999888776432 234555555566677888888888888765421 1 1
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 259 AVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 259 ~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
...+...|..+...|+|..|...|-.+
T Consensus 200 ---~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 200 ---YHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp ---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 233456677778889999988888775
No 153
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=85.76 E-value=37 Score=35.52 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch-hhHHHHHHHHHHHhhcH
Q psy11733 156 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV-VDMCLNVIRVSVYLQNW 234 (971)
Q Consensus 156 ~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~-idm~l~lIrv~I~~~dw 234 (971)
..-....+.+.-++.++. ..--.++..+|..|.+.|++++|.+.|.++.... +++. ..+...++.+....+++
T Consensus 109 ~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence 334444555666655555 1223478889999999999999999999987764 3332 22333344444445889
Q ss_pred HHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 235 SHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 235 ~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
..+...+.++-..- ++ + ..+....|..++..|+|.+|...|-.+
T Consensus 183 ~eA~~~~~~~l~~~---p~---~----~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 183 QDAYYIFQEMADKC---SP---T----LLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHHHS---CC---C----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CC---c----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988888876541 11 1 244556788899999999999999886
No 154
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=85.72 E-value=1.8 Score=49.25 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh---------hcHHHHHHHHHHHhccCccc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL---------QNWSHVLSYVNKAEATPDFA 251 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~---------~dw~~V~~~v~KAk~~id~~ 251 (971)
-.++..+|..|+..|++++|.++|.++.+.... .....++-.+.... ++|..+...+.+|-..-..
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~- 211 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL- 211 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-
Confidence 457999999999999999999999999887543 35666666666677 9999999999988664211
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhc--------cCHHHHHHHHhhc
Q psy11733 252 EGKDNNQAVFTKLKVAAGLAELAT--------RKYKTAARFFLQA 288 (971)
Q Consensus 252 ~d~~r~~~l~~kLk~~~GL~~L~~--------r~yk~AA~~FLea 288 (971)
. ......-|..++.. |+|.+|...|-.+
T Consensus 212 ----~-----~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 212 ----D-----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247 (474)
T ss_dssp ----C-----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----C-----HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 1 12334556666666 8899999998876
No 155
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=85.22 E-value=3.4 Score=36.31 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..|...|++++|.++|.++...... ..+....+-.+....|++..+...+.++-..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999998776432 2456667777778889999999999988664
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=84.96 E-value=5.9 Score=34.54 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++..+|..|...|++++|.++|.++...... .....+.+-.+....++|..+...+.++...
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467889999999999999999999998776432 3456677777788889999999999988654
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=84.68 E-value=1.5 Score=41.22 Aligned_cols=67 Identities=9% Similarity=0.104 Sum_probs=55.4
Q ss_pred HHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCC---------------chhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy11733 750 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN---------------GKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 814 (971)
Q Consensus 750 IR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts---------------~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA 814 (971)
.-..+..+|..|.+.|+++.|+++|.++.+.+.. ......+.+++-.+.+..++|.....+..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456889999999999999999999999887432 3455678888888888999999998888887
Q ss_pred hc
Q psy11733 815 EA 816 (971)
Q Consensus 815 ~~ 816 (971)
-.
T Consensus 90 l~ 91 (162)
T 3rkv_A 90 LK 91 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=84.51 E-value=3 Score=35.67 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=50.6
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
.++..+|..|.+.|+.++|+++|.++.+..... .+..+++-.+.+..+++.....+..+|-.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 467789999999999999999999998765443 45567777788888999988888888765
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=84.50 E-value=8.3 Score=41.56 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..++..+|..|...|++++|+++|.++...... ....++++-.+....++|..+...+.++-.+-.. ++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~-- 264 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------NK-- 264 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CH--
Confidence 578999999999999999999999998887543 3466777777888899999999999998765211 11
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhh
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQ 287 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLe 287 (971)
.....-|..+...|++..|....+.
T Consensus 265 --~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 265 --AAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445556677888877665544
No 160
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=84.34 E-value=3.3 Score=34.03 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=49.2
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
-.++..+|..|.+.|+.++|+++|.++.+..... .+..+.+-.+.+..+++.....+..+|-.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567789999999999999999999998765443 35567777777788888888888777754
No 161
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.06 E-value=0.85 Score=41.16 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
..|.+|+.-...|+++.+|+.||+|++.|.+.|..|...|.|.=
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34677888889999999999999999999999999999998753
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.31 E-value=4.3 Score=36.08 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..|...|++++|+++|.++...... .....+.+-.+....|++..+...+.++-..
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 56889999999999999999999998776432 2466777777888899999999999988765
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.30 E-value=1.1 Score=51.21 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
++..+|..+++.|++++|.++|.++.+.... ..+...++-.+....++|..+...+.+|-..-. + . .
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~--~-----~ 74 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDK---K--Y-----I 74 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---T--C-----H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---C--C-----H
Confidence 4556778888888899998888888776432 245666667777778888888888888866421 1 1 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..++..|+|++|...|-.+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23345567778888888888888765
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.68 E-value=4.1 Score=38.22 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-.++..+|..|+..|++++|+++|.++...... .....+++-.+....++|..+..++.++-..
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 457889999999999999999999998776533 3567777777888899999999999998765
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=82.62 E-value=11 Score=42.70 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
...++..+|..|++.|++++|+++|.++...... ....++++-.+...+++|..+..++.+|-.+-... +
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~- 385 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------K- 385 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H-
Confidence 3578999999999999999999999998876532 35677788888888999999999999997652111 1
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhccc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQAHF 290 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f 290 (971)
.....-|..+...+++..|...++...|
T Consensus 386 ---~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 ---AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344556667788888877766544
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=82.62 E-value=5.2 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..+...|++++|.++|.++...... .......+..+....+++..+...+.++...
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46788999999999999999999998776432 2456667777888889999999999988654
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=82.18 E-value=5.4 Score=33.74 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++..+|..|...|++++|.+++.++...... .......+..+....|++..+...+.++...
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 346888999999999999999999998776543 2456667777788889999999999988654
No 168
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=81.99 E-value=7 Score=44.84 Aligned_cols=95 Identities=9% Similarity=-0.094 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..|...|++++|.++|.++...... ..+...++-.+....|++..+.+.+.++-..-.. .
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~---- 124 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-----E---- 124 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C----
Confidence 457889999999999999999999998776532 2466677777888899999999999998765211 1
Q ss_pred HHHHHHHHHHHHhhc---cCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELAT---RKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~---r~yk~AA~~FLea 288 (971)
......-|..+... |++.+|...|-.+
T Consensus 125 -~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 125 -PYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp -HHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 12233445566777 9999999988765
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.62 E-value=5 Score=36.91 Aligned_cols=64 Identities=20% Similarity=0.081 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-..+..+|..|...|++++|+++|.++...... ..+..+++-.+....|++..+...+.++...
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456889999999999999999999998876543 2356677777888899999999999998765
No 170
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.62 E-value=14 Score=48.38 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHH
Q psy11733 144 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLN 223 (971)
Q Consensus 144 ~~D~~wie~~~~~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~ 223 (971)
..|++......+. ++++ +++++.++.- -..+..+|+++++.|+|++|.++|.++ +....
T Consensus 1168 ~Idt~LafaYAKl-----~rle-ele~fI~~~n----~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~r 1226 (1630)
T 1xi4_A 1168 YVETELIFALAKT-----NRLA-ELEEFINGPN----NAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGR 1226 (1630)
T ss_pred cccHHHHHHHHhh-----cCHH-HHHHHHhCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHH
Confidence 4556544444333 4455 3656654332 235678999999999999999999986 34456
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhh
Q psy11733 224 VIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQ 287 (971)
Q Consensus 224 lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLe 287 (971)
+.++.+.+|++..+.+...||.+. ..| ---+.+++..|+|+.|..+.+.
T Consensus 1227 LA~tLvkLge~q~AIEaarKA~n~----~aW-----------kev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKANST----RTW-----------KEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCH----HHH-----------HHHHHHHhhhhHHHHHHHHHHh
Confidence 666777789999998888888432 122 2335667788889888887765
No 171
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=81.51 E-value=1.6 Score=38.47 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=38.6
Q ss_pred HHHHHHHhcccc------ceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 385 RNRALIQYFSPY------LSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 385 R~kaliQYl~PY------ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
|.+.|.+|+..+ -.++...||++||+|...+.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 455566677666 679999999999999999999999999999884
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=81.12 E-value=4.8 Score=44.20 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
++.-+|..|...||+++|++++.+..+.-.+ ...+++....+++.+..|+.+.+.+.+.+.+...+.. .|... ..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-~~~~d---~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-VSGDN---EM 176 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-HHHHH---HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-cccch---HH
Confidence 3568999999999999999999887553221 3578899999999999999999999999887653300 02221 23
Q ss_pred HHHHHHHHHHhhcc--CHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhcCChHHHHHh---ccC-Chhh--hhh
Q psy11733 263 KLKVAAGLAELATR--KYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALATFDRSELEKQ---VIF-SSGF--KLF 334 (971)
Q Consensus 263 kLk~~~GL~~L~~r--~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS~dR~eLK~k---Vld-s~ef--r~~ 334 (971)
.+..+.|...+..| +|..|...|=+. .+.+ |+ .......|. |.+...+-.+-.+- ++. -|+| +.+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~--p~--~~~~~lLln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~ 249 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEEL-SQTF--PT--WKTQLGLLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKEN 249 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTS--CS--HHHHHHHHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhC--CC--cccHHHHHH--HHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 45567776677666 999998888775 2322 21 011123344 55554443332221 111 0110 000
Q ss_pred h-ccchH-HHHHHHHH-HhCCHHHHHHHHHHHHHhcccccchHHh
Q psy11733 335 L-ELEPQ-LRDILVQF-YNSKYATCLNLLAQIMDNLLLDMYIAPH 376 (971)
Q Consensus 335 L-e~eP~-lr~lI~aF-~~~~Y~~~l~~L~~~~~~LllD~yL~~H 376 (971)
. ...|+ +..+|... ..++ ...+.+.+....-..++|+..+
T Consensus 250 ~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 250 AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 0 11344 44665554 3444 6677777777777888888765
No 173
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=81.10 E-value=76 Score=35.56 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHH
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVF 261 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~ 261 (971)
..+..++..|.+.|++++|++.|.++.....+ . .....+..+....|++..+...+.++.... . ++
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~--- 150 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGN--P--NDAFWLAQVYCCTGDYARAKCLLTKEDLYN---R----SS--- 150 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC--H--HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---T----CH---
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCC--c--hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---c----ch---
Confidence 45778999999999999999999998864432 1 345677888888999999999988775431 1 11
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 262 TKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 262 ~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
.....-|..+...|+|.+|...|-+.
T Consensus 151 -~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 151 -ACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred -hHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 23344566778899999999998754
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=81.08 E-value=5.5 Score=35.45 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
..++..+|..|...|++++|.++|.++...... .....+.+-.+....|+|..+...+.++-..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457889999999999999999999998776532 3456677777888899999999999988764
No 175
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.06 E-value=9.1 Score=44.94 Aligned_cols=52 Identities=10% Similarity=-0.155 Sum_probs=40.9
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHhccCHH
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCT----NGKHVVDMCLNVIRVSVYLQNWS 805 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdyct----s~gh~IDm~l~lIRV~if~~D~~ 805 (971)
+.-+|..+.--+++.+|.+++..+..+|. +.|-++.+.-.+|=|.+..|+.+
T Consensus 273 ~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 273 FFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 44567777888899999999999998884 34567777777888888888754
No 176
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.84 E-value=5.2 Score=38.48 Aligned_cols=103 Identities=7% Similarity=-0.072 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhh
Q psy11733 143 PTLDPLLIETKNKK--AAMKLEKLDNDLKNYKSNS-IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD 219 (971)
Q Consensus 143 ~~~D~~wie~~~~~--n~~~le~Le~eLk~yk~Nl-iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~id 219 (971)
..+||...+..-.. .-.+..+.+.-++.++.=. +.+.--.++..+|..|...|++++|+++|.++....+. ..+
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~ 105 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYT 105 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcH
Confidence 45566666654322 2223334444444443211 12334568899999999999999999999998877543 235
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 220 MCLNVIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 220 m~l~lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
..+++-.+....|++..+...+.++-..-
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66777778888999999999999987653
No 177
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.02 E-value=13 Score=37.52 Aligned_cols=90 Identities=26% Similarity=0.253 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhccCcccCC
Q psy11733 182 RGHDDLGDHYLD----CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 182 ~~~~dLg~~y~~----iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~id~~~d 253 (971)
.++..+|..|.. .||+++|+++|.+..+.. ..+.+.++-.+... .+++..+..++.++-..- +
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~ 109 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----Y 109 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----C
Confidence 578889999999 999999999999986652 34566666667777 899999999999886541 1
Q ss_pred CCChhHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
+ .....-|..+.. .+++.+|...|-.+
T Consensus 110 ----~----~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 110 ----A----EGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp ----H----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ----c----cHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 1 222344666667 89999999999876
No 178
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=80.01 E-value=6.9 Score=46.69 Aligned_cols=65 Identities=9% Similarity=-0.048 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-..++..+|..|.+.|++++|++.|.++...... -.+..+++-.+....|+|..+...+.+|-..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888888888888888888887665432 2355566666666778888888888877553
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=79.78 E-value=5.9 Score=35.90 Aligned_cols=63 Identities=11% Similarity=-0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
-.++..+|..+...|++++|+++|.++...... ..+..+++-.+....|++..+...+.++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999998776543 245667777778888999999999988754
No 180
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=79.68 E-value=13 Score=38.97 Aligned_cols=93 Identities=10% Similarity=-0.017 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhh-HHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD-MCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~id-m~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
...+..+|.++...|++++|.++|.++..... ++ .+ +..+...+....|++..+...+.+|-.... ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~------ 167 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIED--ID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TR------ 167 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--SC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC------
Confidence 34688899999999999999999999877432 22 22 555666666678999999999998876421 11
Q ss_pred HHHHHHHHHHHHHhh---ccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELA---TRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~---~r~yk~AA~~FLea 288 (971)
..+.. +.+.+. .|+++.|...|-.+
T Consensus 168 --~~~~~--~~a~~~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 168 --HHVYV--TAALMEYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp --THHHH--HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred --HHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Confidence 11222 333343 69999999888765
No 181
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.34 E-value=6.4 Score=37.03 Aligned_cols=64 Identities=14% Similarity=0.013 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
-.++..+|..|...|++++|+++|.++...... ..+..+++-.+....|++..+...+.++-..
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999998776432 2356677777888899999999999998765
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=78.83 E-value=11 Score=41.45 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 176 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 176 iKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.....-.++..+|..|+..|++++|+++|.++.+... .....++.+-.+....++|..+..++.+|..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP---SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445567899999999999999999999999987643 23566677777788899999999999998765
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=78.15 E-value=6.2 Score=34.30 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=49.1
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
.++..+|.-|.+.|+.++|+++|.++.+..... .+..+.+-.+....+++.....+..+|-.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467889999999999999999999997765443 23667777777888999888888877754
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=77.79 E-value=11 Score=43.54 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---hcCCCc--hhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhH
Q psy11733 185 DDLGDHYLDCGDLSNALKCYSRARDY---CTNGKH--VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQA 259 (971)
Q Consensus 185 ~dLg~~y~~iGDl~~Alk~y~r~Rdy---cts~~h--~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~ 259 (971)
.+.+.-+.+.|+|++|...|.++.+. .-++.| ++.+.-++..+....|+|..+..+..++-...+..-+. .+|.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~ 391 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQ 391 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHH
Confidence 34556677899999999999886544 344555 35666677778888999999999999987765433222 2354
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 260 VFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 260 l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+...+ .--|..+..+|+|++|..+|-.+
T Consensus 392 ~a~~l-~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 392 LGMAV-MRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33222 23355677899999999998876
No 185
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=77.77 E-value=4.6 Score=34.19 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhh-HHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD-MCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~id-m~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.+.+|..++..|++++|.++|.++.+.... . .. ..+.+-.+....|+|..+...+.++-..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPV--G-KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSS--T-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--c-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 457899999999999999999998776432 2 34 5566666777889999999999988654
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=77.45 E-value=19 Score=40.91 Aligned_cols=89 Identities=17% Similarity=-0.030 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhccch--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhhcCCCch--hhHHHHHHHHHHHhhcHH
Q psy11733 163 KLDNDLKNYKSNSIK--ESIRRGHDDLGDHYLDCGDLSNALKCYSRA---RDYCTNGKHV--VDMCLNVIRVSVYLQNWS 235 (971)
Q Consensus 163 ~Le~eLk~yk~NliK--eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~---Rdycts~~h~--idm~l~lIrv~I~~~dw~ 235 (971)
-++.-|+..+.-++. .++-..+..||..|.+.|+|++|..+|.++ ++..-++.|. ...+.++-.+....|+|.
T Consensus 320 ~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~ 399 (433)
T 3qww_A 320 ICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA 399 (433)
T ss_dssp HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHH
Confidence 344555566666664 457788999999999999999999999984 4445555554 334445555666779999
Q ss_pred HHHHHHHHHhccCccc
Q psy11733 236 HVLSYVNKAEATPDFA 251 (971)
Q Consensus 236 ~V~~~v~KAk~~id~~ 251 (971)
.+...+.||-.+.+..
T Consensus 400 eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 400 AGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 187
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.43 E-value=8 Score=40.45 Aligned_cols=103 Identities=9% Similarity=0.033 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCccc----------
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFA---------- 251 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~---------- 251 (971)
..+..+|..+.+.|++++|...|.++...... ..+..+++-++.+..|++..+...+.++-..-...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 46778888888999999999888887765432 24677777788888888888888777664321000
Q ss_pred ----CCCCC-----------hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 252 ----EGKDN-----------NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 252 ----~d~~r-----------~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+..+. .|. -......-|..++..|+|.+|...|..+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 000 0123445567778888999888888876
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=76.38 E-value=8.3 Score=43.98 Aligned_cols=95 Identities=12% Similarity=-0.006 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-.++..+|..|.+.|++++|+++|.++.+.... ......++-.+....|+|..+.+.+.++-..-.. + +.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~----~~- 109 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--D----KD- 109 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--C----TT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH-
Confidence 567899999999999999999999998776432 3456667777778889999999999998765211 1 11
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
..........++..|+|++|.+.+-
T Consensus 110 -~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 110 -AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HHHHHHHHHHHHHHHHHCCC-----
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111222223667899998888876
No 189
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=76.31 E-value=8.9 Score=33.32 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=44.2
Q ss_pred HHHhccccc---eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCC
Q psy11733 389 LIQYFSPYL---SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQD 445 (971)
Q Consensus 389 liQYl~PYs---sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D 445 (971)
|..++.--. .++...||+.+|+|...+.+.|-+|..+|.|... +...+.=....+|
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~-g~~~~~W~i~~~~ 77 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVSD 77 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE-CSSSCEEEECCCC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCceEecCCC
Confidence 446666666 8999999999999999999999999999999654 3444665555543
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=75.94 E-value=7.8 Score=33.92 Aligned_cols=62 Identities=13% Similarity=-0.046 Sum_probs=48.0
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
.++..+|..|.+.|+.++|+++|.++.+..... .+..+.+-.+....+++.....+..+|-.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478889999999999999999999987655433 34566677777778888888887777654
No 191
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=75.30 E-value=10 Score=36.63 Aligned_cols=66 Identities=12% Similarity=0.216 Sum_probs=53.4
Q ss_pred HHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCch-------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 751 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGK-------------HVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 751 R~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~g-------------h~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
-..+..+|..|.+.|+.++|++.|.++.+.+.... -.+++..++-.+.+..++|.....+..+|-.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34577899999999999999999999987664432 1247778888888889999999988888865
No 192
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=74.44 E-value=7.4 Score=35.92 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ ...|+.+...
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~~ 76 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKAG 76 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeCC
Confidence 46789999999999999999999 99999999999999999999999999987544 5667776643
No 193
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.25 E-value=8.3 Score=44.53 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcc-cCC-------chhHHHHHHHHHHHHHhccCHH---HHHH--------
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDY-CTN-------GKHVVDMCLNVIRVSVYLQNWS---HVLS-------- 809 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdy-cts-------~gh~IDm~l~lIRV~if~~D~~---~V~~-------- 809 (971)
..-.=+.-+|.+++--+|+.+|.+++..+..+ |.. .+++.-+..-+|=+.+..|+.+ ...+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~ 297 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETID 297 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHH
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHH
Confidence 44455678999999999999999999999999 863 5777777778887888887543 2222
Q ss_pred -HHHHHhc--CC---Chhhhhcchh--h------hhhhccchh--HHHHHHHh---hcC-------ChhHHHHHHHH---
Q psy11733 810 -YVNKAEA--TP---DFAEVIFSSG--F------KLFLELEPQ--LRDILVQF---YNS-------KYATCLNLLAQ--- 860 (971)
Q Consensus 810 -~i~KA~~--~r---df~~vi~s~~--f------~~~Le~~P~--lr~li~sf---y~~-------~Y~~~~~~L~~--- 860 (971)
|..=.++ .. .|.+++..-+ | -..++..++ +|.++..- +.- .++.+-..|.-
T Consensus 298 ~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~ 377 (455)
T 3t5v_B 298 NWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIG 377 (455)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccC
Confidence 2221122 12 2444443211 1 222333333 24444433 222 24455555541
Q ss_pred -----------------H--HHHHHHHHhhhhcCccceeeccCCCeEEecCC
Q psy11733 861 -----------------I--MALENELMTLILDGQIQARIDSHNKILYAKQQ 893 (971)
Q Consensus 861 -----------------i--maie~EL~~fI~~G~L~arID~vngvl~t~r~ 893 (971)
+ ..+|-=|+.+|..|.|.+.||..+|+++-.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 378 PTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 1 13888899999999999999999997766655
No 194
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=74.17 E-value=7.1 Score=34.71 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=58.2
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc-CCChhhhhcc
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCT----NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA-TPDFAEVIFS 826 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdyct----s~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~-~rdf~~vi~s 826 (971)
..++|.++++.||.+.|++.|..+.+.-. ..-...++...+...-+..||+.....+..+|-. .|+...+..|
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 35899999999999999999999865431 2235778889999999999999999999988854 5666555444
No 195
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=73.74 E-value=13 Score=36.87 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh----cHHHHHHHHHHHhccCcccCCCCC
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQ----NWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~----dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
-.+++.||..|...||+++|+++|.+.-+. ++ .+.+.++=.+... + |+..+..++.+|-.. +
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~-~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g---- 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD-GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----G---- 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----T----
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----C----
Confidence 357889999999999999999999998653 22 3444444333333 5 888888888888321 1
Q ss_pred hhHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
++. -...-|..++. .+++.+|..+|-.+
T Consensus 84 ~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 115 (212)
T 3rjv_A 84 SKS----GEIVLARVLVNRQAGATDVAHAITLLQDA 115 (212)
T ss_dssp CHH----HHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 111 12233555555 78999999999987
No 196
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=72.80 E-value=10 Score=34.67 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=50.8
Q ss_pred HHHHH--HHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 380 LYTQI--RNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 380 L~~~I--R~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.|+.+ |.+++ ..+.|-..+ +...||+.||+|...+-+-|..|..+|-|..+-....|+.+..
T Consensus 23 ~y~~l~i~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 23 SYSELEAIEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp CHHHHHHHHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHHHHHHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 34555 88887 888998888 9999999999999999999999999999866543356776664
No 197
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=72.59 E-value=12 Score=41.50 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc-HHHHHHHHHHHhccCcccCCCC
Q psy11733 177 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQN-WSHVLSYVNKAEATPDFAEGKD 255 (971)
Q Consensus 177 KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~d-w~~V~~~v~KAk~~id~~~d~~ 255 (971)
.+.-..++..+|..+...|++++|+++|.++...... ..+...++-.+....|+ |..+...+.++-..--.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----- 164 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----- 164 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----
Confidence 4556788999999999999999999999998876542 23455555555666785 99999999988654211
Q ss_pred ChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 256 NNQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 256 r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-...+...|..+...|+|..|...|-.+
T Consensus 165 -----~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 165 -----NYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp -----CHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1244566777888899999999988776
No 198
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=72.09 E-value=27 Score=33.01 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
...+++.||..++..-+.|=..+ +...||+.||+|...+-+-|..|-.+|-|..+ ...|+.++...
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~~ 82 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQT 82 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCCc
Confidence 46789999999999999999999 89999999999999999999999999998765 56688877544
No 199
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=71.38 E-value=8.3 Score=36.43 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
...+++.||..++..-+.|=..+ +...||+.||+|...+-+-|..|..+|-|.. -...|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 56789999999999999999999 9999999999999999999999999998854 3556777764
No 200
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=70.65 E-value=8.1 Score=40.51 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=57.2
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccC-CchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCT-NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyct-s~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
..+..+|+++.+.|+.++|..+|.++...|. .+....+++..++++-...||+..+.....+|-+
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999998863 5566788899999999999999999999888866
No 201
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=68.15 E-value=12 Score=32.97 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHhccccc---eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 389 LIQYFSPYL---SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 389 liQYl~PYs---sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
|..++.-.. .++...||+.||+|...+.+.|-+|..+|.|. +++...+.-....+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~-~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ-KEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EESSSSCEEEEC--
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-ecCCCCCeeEEeCc
Confidence 345666556 89999999999999999999999999999994 44566666666554
No 202
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=66.93 E-value=11 Score=35.41 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 376 HVNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 376 Hv~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
-...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ ...|+.+..
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 346789999999999999999999 59999999999999999999999999988654 556777765
No 203
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=66.58 E-value=11 Score=41.24 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCC------chhHHHHHHHHHHHHHhccCHHH
Q psy11733 733 KLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN------GKHVVDMCLNVIRVSVYLQNWSH 806 (971)
Q Consensus 733 kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts------~gh~IDm~l~lIRV~if~~D~~~ 806 (971)
.++..+....+.+.....-..+..||.-|..-|+.++|+++|.++.+-... -...+....++-.+....|++..
T Consensus 33 ~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~ 112 (472)
T 4g1t_A 33 DFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD 112 (472)
T ss_dssp HHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHH
Confidence 344444444444444444456788999999999999999999998654311 11123334455566677899999
Q ss_pred HHHHHHHHhc
Q psy11733 807 VLSYVNKAEA 816 (971)
Q Consensus 807 V~~~i~KA~~ 816 (971)
...+..||..
T Consensus 113 A~~~~~ka~~ 122 (472)
T 4g1t_A 113 VQIYVDKVKH 122 (472)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=66.46 E-value=29 Score=39.44 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=67.5
Q ss_pred HhcCCHHHHHHHHHHHHh---hhcCCCch--hhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHHHHH
Q psy11733 192 LDCGDLSNALKCYSRARD---YCTNGKHV--VDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKV 266 (971)
Q Consensus 192 ~~iGDl~~Alk~y~r~Rd---ycts~~h~--idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~ 266 (971)
...|+|++|.+.|.++.+ ..-++.|. +...-++-.+....|+|..+..+..++-...+..-+. .+|.+-..+ -
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l-~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMW-L 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHH-H
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHH-H
Confidence 357899999999998644 44455553 4556677778888999999999999998765543222 234433323 2
Q ss_pred HHHHHHhhccCHHHHHHHHhhc
Q psy11733 267 AAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 267 ~~GL~~L~~r~yk~AA~~FLea 288 (971)
--|..+..+|+|++|..+|-.+
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH
Confidence 3456678899999999998876
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=65.73 E-value=37 Score=38.35 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=62.2
Q ss_pred HHHHhhccch--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhhcCCCch--hhHHHHHHHHHHHhhcHHHHHHH
Q psy11733 168 LKNYKSNSIK--ESIRRGHDDLGDHYLDCGDLSNALKCYSRA---RDYCTNGKHV--VDMCLNVIRVSVYLQNWSHVLSY 240 (971)
Q Consensus 168 Lk~yk~NliK--eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~---Rdycts~~h~--idm~l~lIrv~I~~~dw~~V~~~ 240 (971)
|+..++-++. .++-..+..||..|...|+|++|.++|.++ ++..-++.|- ...+.++-.+....|+|..+...
T Consensus 314 L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~ 393 (429)
T 3qwp_A 314 ISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKN 393 (429)
T ss_dssp HTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333444443 456777999999999999999999999984 4445555554 34455666667788999999999
Q ss_pred HHHHhccCccc
Q psy11733 241 VNKAEATPDFA 251 (971)
Q Consensus 241 v~KAk~~id~~ 251 (971)
+.||-.+.+..
T Consensus 394 ~~~Al~i~~~~ 404 (429)
T 3qwp_A 394 LRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 206
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=65.50 E-value=28 Score=32.93 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCCh
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNN 257 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~ 257 (971)
+.--.++..+|..|...|++++|.++|.++..... ..........+... ..++.......+.++-.. .++ +
T Consensus 37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~---~P~---~ 107 (176)
T 2r5s_A 37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH-QQAAESPELKRLEQELAA---NPD---N 107 (176)
T ss_dssp HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHH---STT---C
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH-hhcccchHHHHHHHHHHh---CCC---C
Confidence 33456789999999999999999999988755433 11111111111111 111111234444444332 111 1
Q ss_pred hHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 258 QAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 258 ~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 108 ----~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 108 ----FELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 234456678889999999999999876
No 207
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=65.14 E-value=15 Score=48.10 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 179 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 179 SIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
.-...+..+|+.+.+.|++.+|+++|.+..+ .+.+..++......|+|..+..++.+|+...
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD--------~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADD--------PSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 3467899999999999999999999987633 4667788999999999999999999988654
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=64.89 E-value=12 Score=31.42 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=43.4
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHH-HHHHHHHHHHhccCHHHHHHHHHHHhc-CCCh
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVD-MCLNVIRVSVYLQNWSHVLSYVNKAEA-TPDF 820 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~ID-m~l~lIRV~if~~D~~~V~~~i~KA~~-~rdf 820 (971)
...+|.-|.+.|+.++|++.|.++.+..... .+ ..+.+-.+....+++.....+..+|-. .|+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3567788888888888888888886654332 23 555666666677888877777777654 3443
No 209
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=64.44 E-value=45 Score=31.07 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 182 RGHDDLGDH-YLDCGDL--SNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 182 ~~~~dLg~~-y~~iGDl--~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
.++..+|.. |...|++ ++|.++|.++...... .....+.+-.+....|+|..+...+.++-...
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 467889999 8899999 9999999998776432 24566777788888999999999999987653
No 210
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=62.32 E-value=14 Score=35.03 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
...+++.|+..++..-+.|=..+ +...||+.||+|...+-+-|..|...|-|.. -...|+.+..
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 46788999999999999999999 9999999999999999999999999998854 3556777764
No 211
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=62.31 E-value=19 Score=42.92 Aligned_cols=94 Identities=17% Similarity=0.038 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
..+++.+|..|+..|++++|.++|.++....... .+..+++-.+....|+|.. ...+.+|-..-- + .
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P---~--~---- 533 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTND---G--V---- 533 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT---T--C----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC---c--h----
Confidence 4678899999999999999999999987765432 4566677777778899998 888888765321 1 1
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
......-|..++..|+|.+|...|-.+
T Consensus 534 -~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 534 -ISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 123455677888999999999998776
No 212
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=62.08 E-value=13 Score=37.21 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=54.7
Q ss_pred Chhhhhcchhhhhhhcc--chhHHHHHHHhhcCChhHHHHHHH-----------H--------------------HH---
Q psy11733 819 DFAEVIFSSGFKLFLEL--EPQLRDILVQFYNSKYATCLNLLA-----------Q--------------------IM--- 862 (971)
Q Consensus 819 df~~vi~s~~f~~~Le~--~P~lr~li~sfy~~~Y~~~~~~L~-----------~--------------------im--- 862 (971)
.|.+.+..|.+.+ |+. .+++.+++..|..++|..+-..-+ . |+
T Consensus 41 ~F~eLL~~p~v~~-L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l 119 (169)
T 3chm_A 41 AFSEILALPNVAQ-LEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVEL 119 (169)
T ss_dssp CCHHHHTCHHHHT-TTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHH
T ss_pred ehHHHhCChHHHH-hcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHh
Confidence 3566667777654 443 356999999999999987764311 0 11
Q ss_pred ------HHHHHHH-hhhhcCccceeeccCCCeEEecCCCch
Q psy11733 863 ------ALENELM-TLILDGQIQARIDSHNKILYAKQQDQR 896 (971)
Q Consensus 863 ------aie~EL~-~fI~~G~L~arID~vngvl~t~r~D~R 896 (971)
.+|.=+. +.|..|-|.||||-++++++-.+.-+|
T Consensus 120 ~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 120 DVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp TCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 2555566 777799999999999999987766555
No 213
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=62.07 E-value=43 Score=37.81 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAV 260 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l 260 (971)
-..+..+|.++.+.|++++|.++|.++.... +.+......+..++..-.|++..+...+.+|...... .+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~------ 390 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RH------ 390 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CT------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--ch------
Confidence 4567889999999999999999999988742 2222234445555566678999999999998765321 11
Q ss_pred HHHHHHHHHHH-HhhccCHHHHHHHHhhc
Q psy11733 261 FTKLKVAAGLA-ELATRKYKTAARFFLQA 288 (971)
Q Consensus 261 ~~kLk~~~GL~-~L~~r~yk~AA~~FLea 288 (971)
.+....|+. +...|++..|...|-.+
T Consensus 391 --~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 391 --HVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 111222222 23589999999988765
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=61.21 E-value=35 Score=38.55 Aligned_cols=104 Identities=8% Similarity=-0.006 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhh---cCCCc--hhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCC
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYC---TNGKH--VVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDN 256 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyc---ts~~h--~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r 256 (971)
.....+.+ +.+.|++++|.+.|.++.+.. -++.| ++.+.-++..+....|+|..+..+..|+-...+..-+. .
T Consensus 289 ~ll~~ie~-~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~ 366 (429)
T 3qwp_A 289 ESLKKIEE-LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-S 366 (429)
T ss_dssp HHHHHHHH-HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-S
T ss_pred HHHHHHHH-HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-C
Confidence 33444444 457799999999999976543 33444 35666777888889999999999999987765443222 2
Q ss_pred hhHHHHHHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 257 NQAVFTKLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 257 ~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
+|.+-..+ .--|..+..+|+|++|..+|-.+
T Consensus 367 Hp~~a~~l-~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 367 HPVRGVQV-MKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp CHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 35432222 23455678899999999988776
No 215
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=61.03 E-value=13 Score=38.53 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=57.3
Q ss_pred HHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 374 APHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 374 ~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
....+.+|+.||..++...+.|=..++...+|+.||+|...+-+-|..|-..|-+.-+ +..|+.+.
T Consensus 25 ~s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~--~~~G~~V~ 90 (237)
T 3c7j_A 25 HLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE--THKGAVVA 90 (237)
T ss_dssp GGHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEe
Confidence 3456779999999999999999999999999999999999999999999999987543 45666654
No 216
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=60.79 E-value=37 Score=33.51 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhccCcccC
Q psy11733 181 RRGHDDLGDHYLDCG----DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 181 R~~~~dLg~~y~~iG----Dl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~id~~~ 252 (971)
-.++..||..|.. | |+++|+++|.+.-+. + ..+.+.++-.+... .+|+..+..++.+|-..-..
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-- 121 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----G-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-- 121 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS--
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC--
Confidence 3678899999999 7 999999999998542 2 23444444444433 56888888888887643210
Q ss_pred CCCChhHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
+..+ .-...-|..+.. .+++.+|..+|-.+
T Consensus 122 --~~~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 122 --DAAV----DAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp --HHHH----HHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred --cchH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 0001 112334555666 78999999999887
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.71 E-value=54 Score=38.54 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHH
Q psy11733 156 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWS 235 (971)
Q Consensus 156 ~n~~~le~Le~eLk~yk~NliKeSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~ 235 (971)
.-..++..++.-++-++.-.- ...+..+|+.+.+.|+++.|.+||.++.++- .+..+....++.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDESA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLE-----------SLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-----------HHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChh-----------hhHHHHHHcCCHH
Confidence 344566677777766664322 2457789999999999999999999998863 2333444477887
Q ss_pred HHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcc
Q psy11733 236 HVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAH 289 (971)
Q Consensus 236 ~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~ 289 (971)
.+......++.. + .... ...+++..|++++|.+.+.+..
T Consensus 725 ~~~~~~~~a~~~----~----------~~~~-A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 725 GLVTLAKDAETT----G----------KFNL-AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHT----T----------CHHH-HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----C----------chHH-HHHHHHHcCCHHHHHHHHHHcC
Confidence 766544444321 1 1112 2233667899999999988863
No 218
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=60.64 E-value=4.4 Score=36.47 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
...+++.||.+++...+.|=..+ +...||+.||+|...+-+-|..|...|-|..+ ...|+.+...
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~~ 78 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEKN 78 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCSC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEccC
Confidence 46788999999888888998898 99999999999999999999999999988643 3346555543
No 219
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=58.60 E-value=35 Score=36.78 Aligned_cols=98 Identities=8% Similarity=-0.035 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
+++.+|..+++.|++++|+++|.+...+. .+....++.+.+=.+...+|++..+...+.++..... .|....
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~-------~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA-------GEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT-------TTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-------CccccH
Confidence 88999999999999999999997543322 1111123555555556678999999999999863211 022133
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQA 288 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea 288 (971)
-...+.|+.+...|+..+|...|=..
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45578899999999999999998654
No 220
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=57.86 E-value=13 Score=31.18 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcccc-ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 383 QIRNRALIQYFSPY-LSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 383 ~IR~kaliQYl~PY-ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
.+|.+++. +|... ..++...+|+.||+|...+.+.|..|..+|-|..
T Consensus 10 ~~~~~IL~-~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQ-VLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHH-HHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-HHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 34544443 44333 4599999999999999999999999999998754
No 221
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=57.44 E-value=23 Score=33.55 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy11733 181 RRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKA 244 (971)
Q Consensus 181 R~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KA 244 (971)
..+++.+|..+...|++++|.++|.++....++.. ......++..+....|++..+.....++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 46789999999999999999999999876644322 1235566667777788887776666654
No 222
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=57.01 E-value=24 Score=31.79 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHhhhHHHhhCCHHHHHHHHHHh
Q psy11733 720 IETKNKKAAMKLEKLDNDLKNYKSNSIKES--IRRGHDDLGDHYLDCGDLSNALKCYSRA 777 (971)
Q Consensus 720 ve~~~~~n~~el~kLe~eLk~~k~Nlikes--IR~g~~dlg~~y~~iGDl~~Alkay~r~ 777 (971)
.+.+..+.+.-+..|+..|+..+. .++- .-..+.+=|.||.+.||..+|+.|++=+
T Consensus 4 ~~~L~Eki~kYi~~l~eaL~~i~~--a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 4 EEELRRETLKWLERIEERVKEIEG--DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEE--CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666777778888888887764 2332 3345666699999999999999998744
No 223
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=54.42 E-value=22 Score=38.21 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~ 247 (971)
.++..+|..|+..|++++|+++|.++..... .....++++-.+....++|..+...+.++-.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEE---KNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999887653 23466777777888899999999999998654
No 224
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=53.44 E-value=66 Score=27.81 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=35.1
Q ss_pred cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 396 YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 396 YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
...++...+|+.+|++...+-+-|..|...|-|...-|.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 456899999999999999999999999999999876654
No 225
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=52.33 E-value=32 Score=35.78 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 182 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 182 ~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
.++..+|..|...|++++|.+.|.++..... + .......+-.+....|+|..+...+.++-.
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDG--Q-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677777777777777777776655422 1 234444555555566777777776666644
No 226
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=51.78 E-value=35 Score=30.71 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hhhHHHHH--HHHHHhhhHHHhhCCHHHHHHHHHHh
Q psy11733 724 NKKAAMKLEKLDNDLKNYKS----NSIKESIR--RGHDDLGDHYLDCGDLSNALKCYSRA 777 (971)
Q Consensus 724 ~~~n~~el~kLe~eLk~~k~----NlikesIR--~g~~dlg~~y~~iGDl~~Alkay~r~ 777 (971)
..+.+.-+..|+..|+..+. ...++-+. ..+.+=|.||.+.||..+|+.|++=+
T Consensus 6 ~Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666777777777763 12233333 35666699999999999999988744
No 227
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.69 E-value=14 Score=40.53 Aligned_cols=69 Identities=14% Similarity=0.032 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhcccccchHHh-HHHHHHHHHHHHHHHhcccc----ceecHHhHHHHhCCC-hHHHHHHHHHHHH
Q psy11733 351 SKYATCLNLLAQIMDNLLLDMYIAPH-VNTLYTQIRNRALIQYFSPY----LSADLNKMSVAFNTT-IQALENELMTLIL 424 (971)
Q Consensus 351 ~~Y~~~l~~L~~~~~~LllD~yL~~H-v~~L~~~IR~kaliQYl~PY----ssV~L~~MA~aFgvs-vd~lE~eLv~LI~ 424 (971)
+.|..||+.+.. ..-+||..+ ++.++..+|.+++......| ..+.++.+++.++.+ .++ +..++.
T Consensus 177 gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee----~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQE----IIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHH----HHHHHH
T ss_pred chHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHH----HHHHHH
Confidence 689999997663 124666655 45667899999999999999 489999999999996 554 455554
Q ss_pred cCce
Q psy11733 425 DGQI 428 (971)
Q Consensus 425 dgrL 428 (971)
.=.|
T Consensus 248 ~~gl 251 (316)
T 3t5v_A 248 YYSI 251 (316)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 4333
No 228
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=51.39 E-value=23 Score=40.04 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=57.1
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccC-CchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCT-NGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdyct-s~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
..+..+|+++.+.|+.++|...|.++...|. .+....+++...++.-..+||...+.+...+|.+
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999988764 4556788999999999999999999999988865
No 229
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=50.85 E-value=26 Score=35.55 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+|+.||..++..-+.|=..+.-..||+.||+|...|-.-|..|-.+|-|..+ ...|+.+..
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~~ 81 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEec
Confidence 5678999999999999999999999999999999999999999999999988654 566777754
No 230
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=50.31 E-value=26 Score=35.54 Aligned_cols=64 Identities=9% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+..|+.||..++..-+.|=..++-..+|+.||+|...|-.-|..|-.+|-+..+ +..|+.+..
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 4678999999999999999999999999999999999999999999999998655 566777654
No 231
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=50.17 E-value=53 Score=32.42 Aligned_cols=66 Identities=15% Similarity=0.029 Sum_probs=46.4
Q ss_pred HHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCc------hh---HHHHHHHHHHHHHhccCHHHHHHHHHHHh
Q psy11733 750 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG------KH---VVDMCLNVIRVSVYLQNWSHVLSYVNKAE 815 (971)
Q Consensus 750 IR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~------gh---~IDm~l~lIRV~if~~D~~~V~~~i~KA~ 815 (971)
--..+..+|.-+.+.|++++|+++|.++.++..+. .+ ....+.+.-.+-...++|.-.....++|=
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556789999999999999999999998888762 11 12355555555556677776666655553
No 232
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=49.44 E-value=26 Score=30.01 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.3
Q ss_pred HhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 391 QYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 391 QYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
+++.....++...+|+.||+|...+-+.|..|...|-|..
T Consensus 7 ~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 7 EFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3444345699999999999999999999999999999864
No 233
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=49.44 E-value=39 Score=30.35 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy11733 150 IETKNKKAAMKLEKLDNDLKNYKSNSIKES--IRRGHDDLGDHYLDCGDLSNALKCYSRA 207 (971)
Q Consensus 150 ie~~~~~n~~~le~Le~eLk~yk~NliKeS--IR~~~~dLg~~y~~iGDl~~Alk~y~r~ 207 (971)
.+.+..+...-...|+..|+..+. -++- +-..+.+=|++|++.||+.+|+-+++-.
T Consensus 4 ~~~L~Eki~kYi~~l~eaL~~i~~--a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 4 EEELRRETLKWLERIEERVKEIEG--DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEE--CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566667777778888876663 2233 3344777799999999999999987643
No 234
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=49.44 E-value=98 Score=34.41 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhccCcccC
Q psy11733 181 RRGHDDLGDHYLD----CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEATPDFAE 252 (971)
Q Consensus 181 R~~~~dLg~~y~~----iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~id~~~ 252 (971)
..+++.||.+|.. .+|++.|+++|.+.-+. + ..+....+-.+... .+|+..+...+.++-.. +
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 145 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----G 145 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C
Confidence 3578899999999 99999999999998653 2 23444444444444 56999999999887543 1
Q ss_pred CCCChhHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 253 GKDNNQAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 253 d~~r~~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
+ +. -...-|..+.. .+++.+|...|-.+
T Consensus 146 ~----~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 146 R----DS----GQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp C----HH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C----HH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 1 11 11223444454 78999999999876
No 235
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=49.01 E-value=97 Score=34.44 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhccCcccCC
Q psy11733 182 RGHDDLGDHYLD----CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEATPDFAEG 253 (971)
Q Consensus 182 ~~~~dLg~~y~~----iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~id~~~d 253 (971)
.+++.+|.+|+. .||++.|+++|.+.-+. + ..+.+..+-.+... .+|+..+...+.++-.. +
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~- 109 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----G-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G- 109 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T-
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C-
Confidence 578899999999 89999999999998654 2 24555555555666 78999999999988542 1
Q ss_pred CCChhHHHHHHHHHHHHHHhh----ccCHHHHHHHHhhc
Q psy11733 254 KDNNQAVFTKLKVAAGLAELA----TRKYKTAARFFLQA 288 (971)
Q Consensus 254 ~~r~~~l~~kLk~~~GL~~L~----~r~yk~AA~~FLea 288 (971)
++..+ ..-|..+.. .+++.+|...|-.+
T Consensus 110 ---~~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 110 ---LPQAQ----QNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp ---CHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ---CHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 11111 233555555 78999999999876
No 236
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=48.62 E-value=1.7e+02 Score=31.79 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCC-CchhhHHHHHHHH-
Q psy11733 153 KNKKAAMKLEKLDNDLKNYKSNSIK---ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNG-KHVVDMCLNVIRV- 227 (971)
Q Consensus 153 ~~~~n~~~le~Le~eLk~yk~NliK---eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~-~h~idm~l~lIrv- 227 (971)
+-..........+.-|+-+...+.. ..--.++.-.+..|+..|+.+.|.+.+.++...-... ..--++...+...
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence 5555555667777777776655221 1344566778999999999999999999887653200 0011233333333
Q ss_pred -HHHhh--cHHHHHHHHHHHhccCcccCCCCChhHHHHHHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 228 -SVYLQ--NWSHVLSYVNKAEATPDFAEGKDNNQAVFTKLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 228 -~I~~~--dw~~V~~~v~KAk~~id~~~d~~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
.+..| ++..+...+.++.+ ..++|...+.+.+ .++..|+|.+|-..+-
T Consensus 185 v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln--------~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 185 IKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLN--------LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHH--------HHHHHTCHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHH--------HHHHcCCHHHHHHHHH
Confidence 45555 67767666666533 2333433222222 6899999999888873
No 237
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=47.92 E-value=35 Score=35.34 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
.+.+++.||..++..-+.|=..++-..||+.||+|...|-+-|..|-.+|-|..+ +..|+.+..
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 93 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEeC
Confidence 5678999999999999999999999999999999999999999999999988644 556777654
No 238
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=45.35 E-value=11 Score=35.45 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAK 442 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~ 442 (971)
...+++.|+..++..-+.|=..+ +...||+.||+|...+-+-+..|..+|-|..+ ...|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 45789999999999999999999 99999999999999999999999999988654 566777754
No 239
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=45.18 E-value=34 Score=39.44 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHHH
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFTK 263 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~k 263 (971)
+..+|.-+...|+|++|.++|.++- .+.....++.+++..|+|..+....-+ +. . .|. -
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~-~------~ad---~ 209 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH---IV-V------HAD---E 209 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT-T------CHH---H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH---HH-h------CHh---h
Confidence 4455555555555555555555551 133444555666666666666332221 11 1 111 0
Q ss_pred HHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHHHhhhc
Q psy11733 264 LKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGLCALAT 315 (971)
Q Consensus 264 Lk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~LcaLaS 315 (971)
+.. -.-.+...|.|.+|+++|=.+ .. +.+.-..+|+.|.-+-+
T Consensus 210 l~~-lv~~Yek~G~~eEai~lLe~a-L~-------le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 210 LEE-LINYYQDRGYFEELITMLEAA-LG-------LERAHMGMFTELAILYS 252 (449)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHH-TT-------STTCCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHH-hC-------CcHHHHHHHHHHHHHHH
Confidence 111 111345778999999987765 21 11223456666655544
No 240
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=44.81 E-value=1.3e+02 Score=25.88 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCC
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHN 436 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvn 436 (971)
.++..++.....++...+|+.+|++...+-+-|..|...|-|.-.-+..+
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 34444444456799999999999999999999999999999987666544
No 241
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=44.45 E-value=37 Score=34.65 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
.+.+++.||.+++..-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|.-+ +..|+.+.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~--~g~G~~V~ 72 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ--HGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--cCCCcEee
Confidence 56789999999999999999999 89999999999999999999999999988643 44566665
No 242
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.72 E-value=34 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHH
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCL 222 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l 222 (971)
|.--+....+|+-+...|++++|..+++++..-|..+...+.++-
T Consensus 14 e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 14 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455668899999999999999999999999999887776643
No 243
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=42.87 E-value=72 Score=29.39 Aligned_cols=62 Identities=27% Similarity=0.269 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH----hhcHHHHHHHHHHHhcc
Q psy11733 181 RRGHDDLGDHYLD----CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEAT 247 (971)
Q Consensus 181 R~~~~dLg~~y~~----iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~----~~dw~~V~~~v~KAk~~ 247 (971)
-.+++.||..|.. .+|+++|+++|.+.-+. + ..+.+.++-.+... .+|+..+..++.+|-..
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----N-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----C-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4688999999999 89999999999998654 2 24566666555555 67888888888887543
No 244
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=41.29 E-value=43 Score=34.74 Aligned_cols=65 Identities=5% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
...+++.||.++...-+.|-..+ +-..||+.||+|...+-+-|..|..+|-|..+ +..|+.+...
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 45788889999988889999999 99999999999999999999999999998655 5567777654
No 245
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=40.75 E-value=1e+02 Score=26.36 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
...|.+++.- +.-...++...+|+.+|++...+-+-|..|...|-+..+-+.
T Consensus 15 ~~~~~~iL~~-L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 15 NPVRLGIMIF-LLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp SHHHHHHHHH-HHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred ChHHHHHHHH-HHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3344454433 333457899999999999999999999999999999877644
No 246
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=39.38 E-value=89 Score=26.80 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH 435 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv 435 (971)
..|.+++ .++.....++...+|+.+|+|...+-+.|..|...|-+...-|..
T Consensus 24 ~~~~~il-~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 24 PKRLLIL-CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHHH-HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hHHHHHH-HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4455554 344445579999999999999999999999999999998766644
No 247
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.52 E-value=71 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHH
Q psy11733 747 KESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLN 793 (971)
Q Consensus 747 kesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~ 793 (971)
+|.-=+....+|+-+...|+.++|+.+|.++.--|..++..+.++=.
T Consensus 13 ~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 13 VQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444555688999999999999999999999999999988776543
No 248
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=38.29 E-value=16 Score=33.03 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=45.7
Q ss_pred chHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 372 YIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 372 yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
.+..-+..++...|.+++...+.|=..++...+|+.||+|...+-+-|..|...|-+..+
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333444444555556666655566556899999999999999999999999999998764
No 249
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=38.22 E-value=61 Score=33.84 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 376 HVNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 376 Hv~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
-...+++.|+.++. . +.|=..+ +-..||+.||+|...+-+-|..|..+|-|.- +-.|+.+...
T Consensus 15 ~y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 15 KHQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 34678888998888 7 9999999 9999999999999999999999999999865 6678877654
No 250
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.05 E-value=1e+02 Score=34.67 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhhcCCCchhhHHH
Q psy11733 146 DPLLIETKNKKAAMKLEKLDNDLKNYKSNSI--KESIRRGHDDLGDHYLDCGDLSNALKCYSR-ARDYCTNGKHVVDMCL 222 (971)
Q Consensus 146 D~~wie~~~~~n~~~le~Le~eLk~yk~Nli--KeSIR~~~~dLg~~y~~iGDl~~Alk~y~r-~Rdycts~~h~idm~l 222 (971)
=+..++...+.....+++|..+|..++.+.- -.-++....-+.+-+.+..|.++.+..|.. ++..-.-.+.+|+.-+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788889999999999999999987654 344888888899999999999999888765 4444333344444443
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhccCc
Q psy11733 223 NVIRVSVYLQNWSHVLSYVNKAEATPD 249 (971)
Q Consensus 223 ~lIrv~I~~~dw~~V~~~v~KAk~~id 249 (971)
- ++-++..+.......|.|++..|+
T Consensus 134 ~--~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 134 Q--RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 555666777777777777766553
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=37.81 E-value=91 Score=36.61 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHH
Q psy11733 726 KAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWS 805 (971)
Q Consensus 726 ~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~ 805 (971)
....++.+++.-++-++.--- +..+..+|+++.+.|+++.|.+||.++.|+- .+.++....+|..
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDESA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLE-----------SLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-----------HHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChh-----------hhHHHHHHcCCHH
Confidence 344566677777777765321 3578899999999999999999999998864 2344444577887
Q ss_pred HHHHHHHHHhcCCChhh
Q psy11733 806 HVLSYVNKAEATPDFAE 822 (971)
Q Consensus 806 ~V~~~i~KA~~~rdf~~ 822 (971)
.+.+....|+...+|..
T Consensus 725 ~~~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 725 GLVTLAKDAETTGKFNL 741 (814)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCchHH
Confidence 77777666666555533
No 252
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.51 E-value=50 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
.++.+++ +++.... ++...+|+.+|+|...+-+-|-+|-.+|.|..
T Consensus 17 ~~~~~IL-~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAI-KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHH-HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHH-HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444444 6677655 99999999999999999999999999998855
No 253
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=36.99 E-value=1.5e+02 Score=28.89 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=35.3
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..++...+|..+|++.+.+-+.|.+|-.+|-|.- ..|.|+..++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 220 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL----DGREISILDR 220 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE----SSSCEEESCS
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe----cCCEEEEeCH
Confidence 4578899999999999999999999999998842 3455555444
No 254
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=36.98 E-value=2e+02 Score=24.92 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEE
Q psy11733 380 LYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKIL 439 (971)
Q Consensus 380 L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL 439 (971)
+-+..|.+++.. +.- ..++...+|+.+|+|...+-+-|..|...|-+..+-+......
T Consensus 20 l~~~~r~~Il~~-L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 20 MANERRLQILCM-LHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HCSHHHHHHHHH-TTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred cCCHHHHHHHHH-Hhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 334455565544 443 6899999999999999999999999999999988765544333
No 255
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=36.94 E-value=54 Score=34.11 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
...+++.||.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ ...|+.+...
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 77 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeCC
Confidence 45788899999998889999999 89999999999999999999999999998644 4557777643
No 256
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=36.40 E-value=41 Score=38.78 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
++..+|+.+++.|.+++|..+|.++ +-...+..+-+.+|+|..+.+...||.. ...|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----~~~W-------- 180 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANS----TRTW-------- 180 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHHTC----HHHH--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHcCC----chhH--------
Confidence 8999999999999999999999866 4555667777888999999888888821 1112
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHh
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFL 286 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FL 286 (971)
-.-+-++...|+|+.|-.+.+
T Consensus 181 ---k~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 181 ---KEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp ---HHHHHHHHHTTCHHHHHHTTT
T ss_pred ---HHHHHHHHHcCcHHHHHHHHH
Confidence 222345778999999955544
No 257
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=35.56 E-value=77 Score=28.49 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---cc-hHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy11733 154 NKKAAMKLEKLDNDLKNYKSN---SI-KES--IRRGHDDLGDHYLDCGDLSNALKCYSRARD 209 (971)
Q Consensus 154 ~~~n~~~le~Le~eLk~yk~N---li-KeS--IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rd 209 (971)
..+...-...|+..|+..+.- .. ++- +-..+.+=|++|++.||+.+|+-|++-..-
T Consensus 6 ~Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G 67 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHG 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455566677777666631 11 222 334477779999999999999999875543
No 258
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.36 E-value=45 Score=31.64 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=40.5
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
.+...+....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 344566667889999999999999999999999999999875 557765
No 259
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=35.00 E-value=58 Score=33.39 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC--CCEEEEcc
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH--NKILYAKQ 443 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv--ngiL~~~~ 443 (971)
.+.+++.||..++..-+.|=..+ +-..+|+.||+|...+-+-|..|-..|-+..+--+. .|+.+...
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~ 75 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAA 75 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCC
Confidence 56789999999999999999999 588999999999999999999999999886421344 67777654
No 260
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=34.99 E-value=65 Score=33.32 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 378 NTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 378 ~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
..+++.|+.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ ...|+.+...
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~--~g~G~~V~~~ 72 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV--RGSGIFVRKH 72 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCceEEEecC
Confidence 4678889999888889999999 99999999999999999999999999998643 5567776543
No 261
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.91 E-value=66 Score=28.22 Aligned_cols=33 Identities=6% Similarity=-0.044 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCT 212 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdyct 212 (971)
-.++..-+|..+++.|+|..|+++|.++.+.-.
T Consensus 42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 42 NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345667778888888888888888887766543
No 262
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=34.88 E-value=59 Score=34.52 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcccccee-cHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSA-DLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV-~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
...+++.|+.++...-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|..+ ...|+.+...+
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~ 97 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR--SGSGTYVRERP 97 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CC--EEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCceEEEecCC
Confidence 56788889999988899999999 99999999999999999999999999987543 44567666543
No 263
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=34.35 E-value=54 Score=30.98 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=40.2
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
.+...+.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344555556789999999999999999999999999999885 567765
No 264
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=34.34 E-value=57 Score=28.66 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChH-HHHHHHHHHHHcCceeE
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQ-ALENELMTLILDGQIQA 430 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd-~lE~eLv~LI~dgrL~A 430 (971)
...+.+++ +|+.-...++...+|+.+|++.. .+-+-|..|=.+|-+..
T Consensus 10 ~~~~~~IL-~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 10 AEIKEKIC-DYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHH-HHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHH-HHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 35566665 88888899999999999999999 99999999999999873
No 265
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=34.26 E-value=91 Score=28.03 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH 435 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv 435 (971)
...|.+++..+.. ..++...+|+.+|++...+-+.|..|...|-|..+-|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4445555544433 568999999999999999999999999999998776543
No 266
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=34.24 E-value=16 Score=34.67 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEc
Q psy11733 380 LYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433 (971)
Q Consensus 380 L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARID 433 (971)
=.+..|.-++.|++.|=-.-.|+.++=.=-=-...||+.|+.|...|+|.++||
T Consensus 34 ~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 34 REAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345778999999999988888888874211114579999999999999998886
No 267
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=33.86 E-value=50 Score=31.84 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
.+..++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 344455556678999999999999999999999999999885 567755
No 268
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=33.61 E-value=1.4e+02 Score=28.89 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=37.5
Q ss_pred ccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 395 PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 395 PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
....++...+|..+|++.+.+-+.|.+|..+|-|. ...|.|...++
T Consensus 160 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 205 (216)
T 4ev0_A 160 PLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREA 205 (216)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 35678999999999999999999999999999885 23566666543
No 269
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=33.56 E-value=71 Score=27.92 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 379 TLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 379 ~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
.+.+..|.+++... ...++...+|+.+|+|...+-+-|..|...|-|..+
T Consensus 27 ~l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 27 AVTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34445565555544 355899999999999999999999999999998754
No 270
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.02 E-value=1.6e+02 Score=28.59 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=36.1
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
-.++...+|..+|++.+.+-+.|.+|..+|-|.- ..|.|...++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~ 211 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDS 211 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH
Confidence 3578899999999999999999999999998842 3566666543
No 271
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=32.97 E-value=94 Score=30.52 Aligned_cols=77 Identities=14% Similarity=0.004 Sum_probs=53.9
Q ss_pred hcccccchHHhHHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCC
Q psy11733 366 NLLLDMYIAPHVNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQD 445 (971)
Q Consensus 366 ~LllD~yL~~Hv~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D 445 (971)
.+...+-|+...++=++-+..-+. -.+=..++.+.+|+.+|+|+..+++-|..|-..|-|..+=....|..-++.|+
T Consensus 15 ~~~~~M~lS~~~~yAlr~L~~LA~---~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 91 (159)
T 3lwf_A 15 LYFQGMKITTKGRYGLTITLELAK---RIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPE 91 (159)
T ss_dssp -CCCSSCCCHHHHHHHHHHHHHHH---TTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTT
T ss_pred ceeeeeeCchHHHHHHHHHHHHHh---cCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHH
Confidence 344445556655555555444433 22334699999999999999999999999999999987755555666666553
No 272
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=32.91 E-value=40 Score=34.19 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHH
Q psy11733 381 YTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTL 422 (971)
Q Consensus 381 ~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~L 422 (971)
..+=|.+.|.+++.-...|+.+.+|+.||+|++.|-+.|..|
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL 50 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYL 50 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHh
Confidence 356689999999999999999999999999999999998886
No 273
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=32.67 E-value=1.8e+02 Score=33.42 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh---------hcHHHHHHHHHHHhccCcccCCC
Q psy11733 184 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL---------QNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 184 ~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~---------~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
+..+-+.+.+.|++++|++.|.+|++.-..++.. .+-.+|.+.... ++...+.+.+.+... .+ .
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~--tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~G--~ 101 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY--HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---DK--V 101 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH--HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---TT--C
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---hC--C
Confidence 3445578899999999999999998864433322 111223332211 122333333332221 11 1
Q ss_pred CChhHHHHHHHHHHHHHHhhccCHHHHHHHHhhcccCCCCcccCCChhHHHHHHHH-HhhhcCChHHHHHhccCChhhhh
Q psy11733 255 DNNQAVFTKLKVAAGLAELATRKYKTAARFFLQAHFDYCDFPELLSPNNIATYGGL-CALATFDRSELEKQVIFSSGFKL 333 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~~L~~r~yk~AA~~FLea~f~~~~~~ells~~Dva~Y~~L-caLaS~dR~eLK~kVlds~efr~ 333 (971)
. |.....-.+..| +...|++..|.+.|-+.. ... +.| |+..|..| .+.+...+-+--..+++.-.-..
T Consensus 102 ~--Pd~~tyn~lI~~--~~~~g~~~~A~~l~~~M~-~~g-----~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 102 V--PNEATFTNGARL--AVAKDDPEMAFDMVKQMK-AFG-----IQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp C--CCHHHHHHHHHH--HHHHTCHHHHHHHHHHHH-HTT-----CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred C--CCHHHHHHHHHH--HHhcCCHHHHHHHHHHHH-HcC-----CCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 111111112222 446789999999987652 111 112 23344433 33333222222222322111111
Q ss_pred hhccchHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Q psy11733 334 FLELEPQLRDILVQFY-NSKYATCLNLLAQIMDN 366 (971)
Q Consensus 334 ~Le~eP~lr~lI~aF~-~~~Y~~~l~~L~~~~~~ 366 (971)
+......+.-+|..|. .+++..++++|+++++.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 1111233677788775 56788888888877543
No 274
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=32.63 E-value=53 Score=31.20 Aligned_cols=47 Identities=6% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
+...+.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 44455556789999999999999999999999999999885 578876
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.94 E-value=51 Score=30.17 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCL 222 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l 222 (971)
-...+|+-+...|+++.|+.+++++...|..+...+.++-
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457899999999999999999998888988776665543
No 276
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=31.38 E-value=2e+02 Score=28.12 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy11733 182 RGHDDLGDHYLDCG---DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 246 (971)
Q Consensus 182 ~~~~dLg~~y~~iG---Dl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~ 246 (971)
.+.+.+|--+.+.. |..++++.+..+.+.. ++...-|.+.++--.....+|+..+..++.++-+
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556666666655 5556666666554431 1223345544444444455666666666666544
No 277
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.91 E-value=62 Score=30.97 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE--EEcCCCCEEEEccCCCcchHHHHHHH
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQA--RIDSHNKILYAKQQDQRSTTFEKSLN 456 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A--RIDsvngiL~~~~~D~R~~~yq~alk 456 (971)
.-.+.+.+|+.+|+++..+.+.|.+||..|-|.= +.|..++......- ...|++..+
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL---~pL~ekL~~ 108 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL---QPLWGKLYE 108 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEEC---HHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeH---HHHHHHHHH
Confidence 4468899999999999999999999999998865 77877666655543 235555544
No 278
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=30.54 E-value=2.5e+02 Score=25.78 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=47.5
Q ss_pred ecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC--CCEEEEccCCCcchHHHHHHHHHHHHHHHH
Q psy11733 399 ADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH--NKILYAKQQDQRSTTFEKSLNVGKEYARKS 465 (971)
Q Consensus 399 V~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv--ngiL~~~~~D~R~~~yq~alk~gd~l~~~a 465 (971)
++...+|+.+|++...+-+-|..|...|-|.-.-+.. .|..+...+.+....++.+.+..+.+....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~ 111 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRL 111 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999997654443 233333334445566666655555554443
No 279
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=30.12 E-value=98 Score=30.37 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
+...+..-..++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34445555679999999999999999999999999999884 577765
No 280
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=29.25 E-value=76 Score=30.35 Aligned_cols=48 Identities=15% Similarity=0.008 Sum_probs=38.8
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..++.+.+|+.+|+|...+++-|..|-..|-+..+=....|..-+..|
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 469999999999999999999999999999887654444455555544
No 281
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=29.14 E-value=56 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=51.7
Q ss_pred HHHHHhhhHHHhh-----CCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHhcCC
Q psy11733 752 RGHDDLGDHYLDC-----GDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY-LQNWSHVLSYVNKAEATP 818 (971)
Q Consensus 752 ~g~~dlg~~y~~i-----GDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if-~~D~~~V~~~i~KA~~~r 818 (971)
.+|.-+|-+|.+. ||.++|.++|.|+.+.+. ++.+|.....-+.-.. .+|......++++|-+.+
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 4899999999995 999999999999998765 3445555555555444 489999999999997743
No 282
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=28.66 E-value=1.1e+02 Score=27.99 Aligned_cols=61 Identities=28% Similarity=0.298 Sum_probs=45.7
Q ss_pred HHHHHHhhhHHHh----hCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHhc
Q psy11733 751 RRGHDDLGDHYLD----CGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY----LQNWSHVLSYVNKAEA 816 (971)
Q Consensus 751 R~g~~dlg~~y~~----iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if----~~D~~~V~~~i~KA~~ 816 (971)
-.++..||..|.. .+|.++|++.|.++-+. |+ .+-++++-.+... .+|+.....+..+|-.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4688899999998 89999999999999764 22 3445555555555 5788887777777754
No 283
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.47 E-value=54 Score=31.78 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 387 RALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 387 kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
+.|.+.++--.+++...+|+.+|+|...+-+-|.+|...|-|. |.+|..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 3456677777889999999999999999999999999999874 778865
No 284
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=28.28 E-value=1.3e+02 Score=29.74 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=35.0
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEcc
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQ 443 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~ 443 (971)
..++...+|..+|++.+.+-+.|.+|..+|-|.- ..|.|+..+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV----SPRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----cCCEEEEeC
Confidence 4578999999999999999999999999998852 345555544
No 285
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=28.15 E-value=40 Score=30.53 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHH
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENEL 419 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eL 419 (971)
-|...+.+|+.+.. +++..+|+.||+|..-+-+.|
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 36677778888766 999999999999999888776
No 286
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=27.95 E-value=2.2e+02 Score=25.29 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=38.5
Q ss_pred cceecHHhHHHHh-CCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 396 YLSADLNKMSVAF-NTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 396 YssV~L~~MA~aF-gvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
....+...+|+.+ |++...+-+-|..|...|-|.-+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 99999999999999999999998887766
No 287
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=27.44 E-value=1.7e+02 Score=29.25 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcC-CCch---------------------hhHHHHHHHHHHHhhcHHHH
Q psy11733 180 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTN-GKHV---------------------VDMCLNVIRVSVYLQNWSHV 237 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts-~~h~---------------------idm~l~lIrv~I~~~dw~~V 237 (971)
.-..+.-+|+-++..|+|..|.+.|.++...+.. +++. .++-+.+-++.+..++|..+
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 3445778999999999999999999996555531 1111 26777888888899999988
Q ss_pred HHHHH
Q psy11733 238 LSYVN 242 (971)
Q Consensus 238 ~~~v~ 242 (971)
...+.
T Consensus 142 i~~Le 146 (167)
T 3ffl_A 142 IAILD 146 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 288
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.26 E-value=1.3e+02 Score=26.43 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeE
Q psy11733 390 IQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQA 430 (971)
Q Consensus 390 iQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~A 430 (971)
+..+.+=...+...+|+.||++...+-+.|-.|=..|.+..
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 34888888899999999999999999999999999998864
No 289
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=27.22 E-value=3e+02 Score=26.86 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHHHhhC---CHHHHHHHHHHhhcccCCchhHHHH
Q psy11733 714 TLDPLLIETKNKKAAMKLEKLDNDLKNYKSNSIKESIRRGHDDLGDHYLDCG---DLSNALKCYSRARDYCTNGKHVVDM 790 (971)
Q Consensus 714 ~~D~~wve~~~~~n~~el~kLe~eLk~~k~NlikesIR~g~~dlg~~y~~iG---Dl~~Alkay~r~rdycts~gh~IDm 790 (971)
+++++.+...+++...+++ ++. .-..+...+|-=+.+.. |.++|++.++...+.. .+...-|.
T Consensus 8 ~l~~~~l~~~~~~y~~e~~----------~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~ 73 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKA----------AGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDY 73 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHH----------TTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHc----------cCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHH
Confidence 4455566666555555443 111 12234445555555555 5556666666665532 23455566
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 791 CLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 791 ~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
++++--..+..+|+....+|++++=.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 66666666666677777777666644
No 290
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=27.14 E-value=73 Score=30.42 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV 217 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~ 217 (971)
+.-|+.++-||--+++.|||++|.++...+.+.-+...+.
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 4689999999999999999999999998877765544433
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=26.60 E-value=62 Score=29.58 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=33.0
Q ss_pred HHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHH
Q psy11733 754 HDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCL 792 (971)
Q Consensus 754 ~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l 792 (971)
...+|+-+...|+.+.|+++|.++.--|..++..+.++=
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 347888999999999999999999999999888776643
No 292
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=26.59 E-value=1.4e+02 Score=26.51 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
...|.+++.... ...++...+|+.+|+|...+-+-|..|...|-+..+-+.
T Consensus 25 ~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 25 DYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp SHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 344555444333 345799999999999999999999999999999876554
No 293
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.58 E-value=97 Score=32.04 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEA 816 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~ 816 (971)
..+..+|.-+.+.||.++|.+.|.++....... .+..+.+-++.+..+++......+.++-.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 467889999999999999999999997665543 46788888999999999999999888754
No 294
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.57 E-value=3.4e+02 Score=27.28 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCChhhhhcchhhhh
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEVIFSSGFKL 831 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~~~rdf~~vi~s~~f~~ 831 (971)
.-|..||+-..+.|+++-|.+||.++.|+..- .=+....||...+.+-...|+...++
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L-----------~~Ly~~tg~~e~L~kla~iA~~~g~~----------- 92 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFDKL-----------SFLYLVTGDVNKLSKMQNIAQTREDF----------- 92 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHH-----------HHHHHHHTCHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHH-----------HHHHHHhCCHHHHHHHHHHHHHCccH-----------
Confidence 36778999999999999999999998885321 11233356776666655555544433
Q ss_pred hhccchhHHHHHHHhhcCChhHHHHHHHH
Q psy11733 832 FLELEPQLRDILVQFYNSKYATCLNLLAQ 860 (971)
Q Consensus 832 ~Le~~P~lr~li~sfy~~~Y~~~~~~L~~ 860 (971)
...+...||.+++..|.+.|.+
T Consensus 93 -------n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 93 -------GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp -------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHH
Confidence 3446778999999999998865
No 295
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=26.47 E-value=12 Score=33.42 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=38.2
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEc
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARID 433 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARID 433 (971)
.|.-++.|++.|=..-.|+.++=.=-=-...+|+.|++|...|+|.++||
T Consensus 6 ~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 6 PVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp CSSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 35567888888888878887774211114579999999999999999886
No 296
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.84 E-value=2.5e+02 Score=31.56 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhhhHHHhhCCHHHHHHHHHHh-hcccCCchhHHHHHHHH
Q psy11733 718 LLIETKNKKAAMKLEKLDNDLKNYKS--NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRA-RDYCTNGKHVVDMCLNV 794 (971)
Q Consensus 718 ~wve~~~~~n~~el~kLe~eLk~~k~--NlikesIR~g~~dlg~~y~~iGDl~~Alkay~r~-rdycts~gh~IDm~l~l 794 (971)
..+++.++..+..+++|..+|.+++. +.+-.-++.-+.-+..=+..+.|.++.+-.|+.- +.+-.-.+.+||.-+.
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~- 134 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ- 134 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 34888899999999999999999874 4455778889999999999999999999999885 4555666667766665
Q ss_pred HHHHHhccCHHHHHHHHHHHh
Q psy11733 795 IRVSVYLQNWSHVLSYVNKAE 815 (971)
Q Consensus 795 IRV~if~~D~~~V~~~i~KA~ 815 (971)
+|-+...+......-|.|.+
T Consensus 135 -~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 135 -RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 297
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.83 E-value=61 Score=37.82 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhhcCCCchhhHHHH
Q psy11733 147 PLLIETKNKKAAMKLEKLDNDLKNYKSNSIKES--IRRGHDDLGDHYLDCGDLSNALKCYS-RARDYCTNGKHVVDMCLN 223 (971)
Q Consensus 147 ~~wie~~~~~n~~~le~Le~eLk~yk~NliKeS--IR~~~~dLg~~y~~iGDl~~Alk~y~-r~Rdycts~~h~idm~l~ 223 (971)
+..+++..++....+++|..++.+++.|.-+.+ ++.-+..|-.-+-+.+|.++...-|+ .+|..-...+..|+..+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl- 130 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV- 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455899999999999999999999977654322 44445555555556667777776666 45554443444455544
Q ss_pred HHHHHHHhhcHHHHHHHHHHHhccC
Q psy11733 224 VIRVSVYLQNWSHVLSYVNKAEATP 248 (971)
Q Consensus 224 lIrv~I~~~dw~~V~~~v~KAk~~i 248 (971)
-++.++.++.......|.|++.-|
T Consensus 131 -snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 -QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666677766443
No 298
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=25.82 E-value=2.4e+02 Score=27.70 Aligned_cols=105 Identities=8% Similarity=0.035 Sum_probs=59.9
Q ss_pred CChhhhhhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccchHHhHHHHHHHHHHHHHHHh------ccccceec
Q psy11733 327 FSSGFKLFLELEPQLRDILVQFYNSKYATCLNLLAQIMDNLLLDMYIAPHVNTLYTQIRNRALIQY------FSPYLSAD 400 (971)
Q Consensus 327 ds~efr~~Le~eP~lr~lI~aF~~~~Y~~~l~~L~~~~~~LllD~yL~~Hv~~L~~~IR~kaliQY------l~PYssV~ 400 (971)
+...|..+++..|.+...+......++....+.+.... ..+. -.+-...|++... ++ ...-..++
T Consensus 112 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~---~~~~-~~Rl~~~L~~l~~-----~~~~~~~~~~~~~~~t 182 (232)
T 2gau_A 112 PVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLT---QKHV-RGRLAETLLILKE-----NFGFENDGATLSIYLS 182 (232)
T ss_dssp EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCH-HHHHHHHHHHHHH-----HHCBCTTSSBBSCCCC
T ss_pred EHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCH-HHHHHHHHHHHHH-----HcCCCCCCcEEEcccC
Confidence 33445556666777776666555555554444333221 1111 1111111112111 12 11124578
Q ss_pred HHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 401 LNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 401 L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
...+|..+|++.+.+-+.|.+|..+|-|.- ..|.|...++
T Consensus 183 ~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 222 (232)
T 2gau_A 183 REELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDC 222 (232)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCH
Confidence 999999999999999999999999998742 3456666543
No 299
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=25.61 E-value=82 Score=29.17 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccCCCcchHHHHHHHHHHHH
Q psy11733 382 TQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQDQRSTTFEKSLNVGKEY 461 (971)
Q Consensus 382 ~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~D~R~~~yq~alk~gd~l 461 (971)
..++.+++..|-. .-.+...+|+.||++...+.++|..+...|.|-..- .+.... ...++++.+....+
T Consensus 6 ~~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~---~~~~~~------~~~~~~~~~~l~~~ 74 (121)
T 2pjp_A 6 QAIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV---KDRYYR------NDRIVEFANMIRDL 74 (121)
T ss_dssp HHHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE---TTEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec---CCceEC------HHHHHHHHHHHHHH
Confidence 3456666555532 234777999999999999999999999999886532 233332 24556665554333
No 300
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=25.43 E-value=58 Score=30.32 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
+..++.....++...+|+.+|+|...+-+.|.+|...|-|.
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 44456666778999999999999999999999999999885
No 301
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=24.92 E-value=3.5e+02 Score=23.66 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcC
Q psy11733 383 QIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDS 434 (971)
Q Consensus 383 ~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDs 434 (971)
..|.+++.- + ....++...+|+.+|++...+-+.|..|...|-|..+-+.
T Consensus 21 ~~r~~IL~~-L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 21 ETRWEILTE-L-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHHHH-H-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHH-H-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 345454443 3 2456899999999999999999999999999999876663
No 302
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.83 E-value=3e+02 Score=27.65 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcHHHHHHHHHHHhccCcccCCCCChhHHHH
Q psy11733 183 GHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAEATPDFAEGKDNNQAVFT 262 (971)
Q Consensus 183 ~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~~dw~~V~~~v~KAk~~id~~~d~~r~~~l~~ 262 (971)
-+..||+.-...|+++-|.+||.++.++. . +.. +....||-..+.+-...|+. .+
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~-L~~--Ly~~tg~~e~L~kla~iA~~----~g---------- 90 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSFD--------K-LSF--LYLVTGDVNKLSKMQNIAQT----RE---------- 90 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------H-HHH--HHHHHTCHHHHHHHHHHHHH----TT----------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCHH--------H-HHH--HHHHhCCHHHHHHHHHHHHH----Cc----------
Confidence 47789999999999999999999988863 1 111 23335666555433222221 11
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHhhcc
Q psy11733 263 KLKVAAGLAELATRKYKTAARFFLQAH 289 (971)
Q Consensus 263 kLk~~~GL~~L~~r~yk~AA~~FLea~ 289 (971)
+..+ .....+..|+++++.+.|.++.
T Consensus 91 ~~n~-af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 91 DFGS-MLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp CHHH-HHHHHHHHTCHHHHHHHHHHTT
T ss_pred cHHH-HHHHHHHcCCHHHHHHHHHHCC
Confidence 1112 2334677888998888888763
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.73 E-value=4.2e+02 Score=24.80 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccC---HHHHHHHHHH
Q psy11733 749 SIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQN---WSHVLSYVNK 813 (971)
Q Consensus 749 sIR~g~~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D---~~~V~~~i~K 813 (971)
+++.-...+-+-|...||.++|.+|....- .+...-.++-..|-.++..++ ..++.+-+..
T Consensus 5 el~kki~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~ 68 (129)
T 2nsz_A 5 HLVKEIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKS 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 334444455556778899999999998764 235556778888899999764 3455554443
No 304
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=24.70 E-value=1.9e+02 Score=28.37 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.5
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.++...||..+|++.+.+-+.|.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47899999999999999999999999999874
No 305
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.57 E-value=1.5e+02 Score=28.48 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=29.7
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.++...+|..+|++.+.+-+.|.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999999999874
No 306
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=24.19 E-value=3.4e+02 Score=23.29 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=39.8
Q ss_pred hccccceecHHhH----HHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 392 YFSPYLSADLNKM----SVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 392 Yl~PYssV~L~~M----A~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
++.-...++...+ |+.+|++...+-+-|.+|...|-+.-..|.....+..
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 3333566888888 9999999999999999999999998888874444443
No 307
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=24.05 E-value=3.2e+02 Score=24.72 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=39.5
Q ss_pred HhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 391 QYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 391 QYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
.++. ...++...+|+.+|++...+-+-|.+|...|-|.-.-|..++
T Consensus 44 ~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 44 RATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3444 678999999999999999999999999999999877776554
No 308
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=23.99 E-value=1.6e+02 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.6
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCC-CCEEEEcc
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSH-NKILYAKQ 443 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsv-ngiL~~~~ 443 (971)
-.++...+|..+|++.+.+-+.|.+|..+|-|. .. .|.|...+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcC
Confidence 357889999999999999999999999999763 33 45666544
No 309
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=23.73 E-value=1.6e+02 Score=28.86 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh-----------hcHHHHH
Q psy11733 180 IRRGHDDLGDHYLDCGDL----------SNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-----------QNWSHVL 238 (971)
Q Consensus 180 IR~~~~dLg~~y~~iGDl----------~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~-----------~dw~~V~ 238 (971)
--.++..+|..+.+.|++ ++|+.+|.++...... ..+..+++=.+...+ ++|..+.
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 345778888888888765 5999999998776543 345555444343333 4777777
Q ss_pred HHHHHHhcc
Q psy11733 239 SYVNKAEAT 247 (971)
Q Consensus 239 ~~v~KAk~~ 247 (971)
.++.||-++
T Consensus 112 ~~~~kAl~l 120 (158)
T 1zu2_A 112 QFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
No 310
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.70 E-value=2e+02 Score=26.13 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=38.9
Q ss_pred hccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 392 YFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 392 Yl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
++.....++...+|+.+|++...+-+-|.+|...|-|.-+-|..++
T Consensus 45 ~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 3334557999999999999999999999999999999887776554
No 311
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=23.63 E-value=2.2e+02 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=36.0
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCE
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKI 438 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngi 438 (971)
+..++.... ++...+|+.+|++...+-+-|.+|...|-|.-+-|..++.
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 334555566 9999999999999999999999999999998888666664
No 312
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.40 E-value=2.6e+02 Score=25.25 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=38.1
Q ss_pred cccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 394 SPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 394 ~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
.....++...+|+.+|++...+-+-|.+|...|-|.-..|..++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 35677999999999999999999999999999999877665444
No 313
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.38 E-value=2.6e+02 Score=25.07 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=38.5
Q ss_pred cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEE
Q psy11733 396 YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKIL 439 (971)
Q Consensus 396 YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL 439 (971)
...++...+|+.+|++...+-+-|.+|...|-|.-..|..++..
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 44699999999999999999999999999999988877766643
No 314
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.97 E-value=68 Score=31.57 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 388 ALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 388 aliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
.+.+.+.-..+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 344455556789999999999999999999999999999884 567764
No 315
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=22.92 E-value=2.8e+02 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred ceecHHhHHHHh-CCChHHHHHHHHHHHHcCceeEEEcCCCCE
Q psy11733 397 LSADLNKMSVAF-NTTIQALENELMTLILDGQIQARIDSHNKI 438 (971)
Q Consensus 397 ssV~L~~MA~aF-gvsvd~lE~eLv~LI~dgrL~ARIDsvngi 438 (971)
..++...+|+.+ |++...+-+-|..|...|-|.-+.|..++.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 458999999999 999999999999999999999888877663
No 316
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=22.65 E-value=3.6e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=38.3
Q ss_pred cceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 396 YLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 396 YssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
+..++...+|+.+|++...+-+-|.+|...|-|.-+-|..++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 457999999999999999999999999999999988887776
No 317
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.53 E-value=1.7e+02 Score=31.89 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHH-hhcHHHHHHHHHHHhccCcc
Q psy11733 183 GHDDLGDHYLDC-----GDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVY-LQNWSHVLSYVNKAEATPDF 250 (971)
Q Consensus 183 ~~~dLg~~y~~i-----GDl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~-~~dw~~V~~~v~KAk~~id~ 250 (971)
+|.-||.+|+.. ||.++|.++|.|...... ++.++...-.-+.-.. .++......++.+|-...-.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 788999999996 999999999999999864 3435555444444434 58999999999999887544
No 318
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=22.14 E-value=2.2e+02 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=36.7
Q ss_pred ceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 397 LSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 397 ssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
..++...+|+.+|+|...+.+-|..|-..|-|..+=....|..-..++
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 568999999999999999999999999999887643333455555544
No 319
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=22.01 E-value=2.7e+02 Score=25.58 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=38.2
Q ss_pred cccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCC
Q psy11733 394 SPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNK 437 (971)
Q Consensus 394 ~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvng 437 (971)
..+..+++..+|+.+|++...+-+-|.+|...|-|.-.-|..++
T Consensus 47 ~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 47 KKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 33567999999999999999999999999999999877776555
No 320
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=21.96 E-value=1.5e+02 Score=23.45 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHHHhccccceecHHhHHHHh-----CCChHHHHHHHHHHHHcCceeEEEcCCCCE
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAF-----NTTIQALENELMTLILDGQIQARIDSHNKI 438 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aF-----gvsvd~lE~eLv~LI~dgrL~ARIDsvngi 438 (971)
-|...+..++.....++.+.+++.| ++|...|-+.|..+ |.+ ++...+|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~ 59 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGS 59 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCc
Confidence 4666677777777789999999999 99999999999843 555 55555553
No 321
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=21.85 E-value=2.6e+02 Score=24.39 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEE
Q psy11733 380 LYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYA 441 (971)
Q Consensus 380 L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~ 441 (971)
+-+..|.+++..... ..++...+|+.+|+|...+-+-|..|...|-+..+-+........
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 334455555544433 458999999999999999999999999999998877665433333
No 322
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.70 E-value=1.2e+02 Score=26.60 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=27.5
Q ss_pred HHHHHhhhHHHhhCCHHHHHHHHHHhhcccCC
Q psy11733 752 RGHDDLGDHYLDCGDLSNALKCYSRARDYCTN 783 (971)
Q Consensus 752 ~g~~dlg~~y~~iGDl~~Alkay~r~rdycts 783 (971)
++..-+|..+.+.||++.|++.|.++.+.-..
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56778899999999999999999999765444
No 323
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.57 E-value=75 Score=30.16 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
+..++.-...++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34455556789999999999999999999999999999874 566653
No 324
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=21.45 E-value=4e+02 Score=29.44 Aligned_cols=89 Identities=13% Similarity=0.024 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh-----hcHHHHHHHHHHHhccCcccCCC
Q psy11733 183 GHDDLGDHYLDCG---DLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYL-----QNWSHVLSYVNKAEATPDFAEGK 254 (971)
Q Consensus 183 ~~~dLg~~y~~iG---Dl~~Alk~y~r~Rdycts~~h~idm~l~lIrv~I~~-----~dw~~V~~~v~KAk~~id~~~d~ 254 (971)
+++.||..|...| |+.+|+++|.+.-+.-.... ..++++-.+. .. +|+..+..++.++- + ++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a---~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa--~---g~- 247 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA---QRVDSVARVL-GDATLGTPDEKTAQALLEKIA--P---GY- 247 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---HHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG--G---GS-
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---HHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc--C---CC-
Confidence 8899999999999 99999999998766432211 1112222222 22 58888888888875 2 11
Q ss_pred CChhHHHHHHHHHHHHH-H--hhccCHHHHHHHHhhc
Q psy11733 255 DNNQAVFTKLKVAAGLA-E--LATRKYKTAARFFLQA 288 (971)
Q Consensus 255 ~r~~~l~~kLk~~~GL~-~--L~~r~yk~AA~~FLea 288 (971)
+..+ ..-|.. + ...+++.+|..+|-.+
T Consensus 248 ---~~a~----~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 248 ---PASW----VSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp ---THHH----HHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred ---HHHH----HHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1112 222332 3 4689999999999886
No 325
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.45 E-value=2.5e+02 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=29.8
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCcee
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQ 429 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ 429 (971)
.++...+|..+|++.+.+-+.|.+|..+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 57899999999999999999999999999875
No 326
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=21.25 E-value=1.6e+02 Score=35.43 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=47.6
Q ss_pred HHhhhHHHhhCCHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHhccCHHHHHHHHHHHh
Q psy11733 755 DDLGDHYLDCGDLSNALKCYSRARDYCTNGKHVVDMCLNVIRVSVYLQNWSHVLSYVNKAE 815 (971)
Q Consensus 755 ~dlg~~y~~iGDl~~Alkay~r~rdycts~gh~IDm~l~lIRV~if~~D~~~V~~~i~KA~ 815 (971)
...++|..+.||.++|-..|+++...|.......+++..+++.=..+||...+.+-..++.
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666777888888888888888888887666777888888888888888887777776664
No 327
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=21.20 E-value=2.3e+02 Score=25.45 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=39.8
Q ss_pred ccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEE
Q psy11733 395 PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILY 440 (971)
Q Consensus 395 PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~ 440 (971)
....++...+|+.+|++...+-+-|.+|...|-|.-.-|..++...
T Consensus 40 ~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~ 85 (138)
T 3bpv_A 40 REPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRY 85 (138)
T ss_dssp HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeE
Confidence 3467899999999999999999999999999999888887766433
No 328
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.07 E-value=3e+02 Score=26.83 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=35.3
Q ss_pred eecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 398 SADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 398 sV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
.++...+|..+|++.+.+-+.|.+|..+|-|.- ..|.|...++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCH
Confidence 478899999999999999999999999998743 3466666543
No 329
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=20.92 E-value=2.2e+02 Score=27.14 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=38.1
Q ss_pred ccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEEEcCCCCEEEEccC
Q psy11733 395 PYLSADLNKMSVAFNTTIQALENELMTLILDGQIQARIDSHNKILYAKQQ 444 (971)
Q Consensus 395 PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~ARIDsvngiL~~~~~ 444 (971)
+=..++...+|+.+|+|+..+++-+..|-..|-|..+=. ..|..-+..|
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 335689999999999999999999999999999876555 4455555554
No 330
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=20.88 E-value=14 Score=32.94 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=36.5
Q ss_pred HHHHHHHHhccccceecHHhHHHHhCCC---hHHHHHHHHHHHHcCceeEEEc
Q psy11733 384 IRNRALIQYFSPYLSADLNKMSVAFNTT---IQALENELMTLILDGQIQARID 433 (971)
Q Consensus 384 IR~kaliQYl~PYssV~L~~MA~aFgvs---vd~lE~eLv~LI~dgrL~ARID 433 (971)
.|.-++.|++.|=..-.|+.++= +- ...+|+.|++|...|+|.++||
T Consensus 8 ~r~~iL~qiL~~eAreRL~rI~l---vKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 8 QKKQIMMQILTPEARSRLANLRL---TRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SSHHHHTTTCCHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHHcCHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 45667888888877777766652 22 3469999999999999999987
No 331
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=20.79 E-value=1.1e+02 Score=28.94 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=39.0
Q ss_pred HHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCcee---EEEcCC
Q psy11733 389 LIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQ---ARIDSH 435 (971)
Q Consensus 389 liQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~---ARIDsv 435 (971)
+..++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 34455555779999999999999999999999999999884 567765
No 332
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=20.67 E-value=2.3e+02 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.047 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCch
Q psy11733 178 ESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTNGKHV 217 (971)
Q Consensus 178 eSIR~~~~dLg~~y~~iGDl~~Alk~y~r~Rdycts~~h~ 217 (971)
+..|+.++-||-=+++.|||++|.++...+.+.-+...+.
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3466677777777777777777777666665554444333
No 333
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=20.05 E-value=5.9e+02 Score=25.32 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhccccceecHHhHHHHhCCChHHHHHHHHHHHHcCceeEE
Q psy11733 377 VNTLYTQIRNRALIQYFSPYLSADLNKMSVAFNTTIQALENELMTLILDGQIQAR 431 (971)
Q Consensus 377 v~~L~~~IR~kaliQYl~PYssV~L~~MA~aFgvsvd~lE~eLv~LI~dgrL~AR 431 (971)
...+.+..|.+++. ++. -..++...+|+.+|+|...+-+-|..|...|-|...
T Consensus 14 ~k~l~d~~~~~IL~-~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 14 IKVMLEDTRRKILK-LLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHSHHHHHHHH-HHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHH-HHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44455556665554 444 368999999999999999999999999999999765
Done!